Multiple sequence alignment - TraesCS5D01G415000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G415000 chr5D 100.000 2468 0 0 1 2468 477320259 477322726 0.000000e+00 4558
1 TraesCS5D01G415000 chr5D 91.667 192 10 5 2040 2227 36212301 36212490 6.770000e-66 261
2 TraesCS5D01G415000 chr5D 88.889 171 16 2 169 338 495292185 495292353 8.950000e-50 207
3 TraesCS5D01G415000 chr5D 92.000 100 6 1 1944 2041 294640234 294640333 3.310000e-29 139
4 TraesCS5D01G415000 chr5B 90.085 1644 79 32 346 1940 584898770 584900378 0.000000e+00 2056
5 TraesCS5D01G415000 chr5B 94.152 171 7 2 2043 2211 259848586 259848755 8.760000e-65 257
6 TraesCS5D01G415000 chr5B 89.941 169 11 5 162 328 616690133 616689969 1.920000e-51 213
7 TraesCS5D01G415000 chr5B 90.625 160 11 3 171 326 586357498 586357657 2.490000e-50 209
8 TraesCS5D01G415000 chr5B 87.719 171 19 2 159 328 589459143 589458974 5.380000e-47 198
9 TraesCS5D01G415000 chr5B 93.846 130 3 3 2211 2340 584900426 584900550 9.010000e-45 191
10 TraesCS5D01G415000 chr5A 89.842 1644 82 38 346 1940 596552164 596553771 0.000000e+00 2032
11 TraesCS5D01G415000 chr5A 85.328 259 14 4 2211 2468 596553786 596554021 1.900000e-61 246
12 TraesCS5D01G415000 chr5A 84.868 152 14 4 23 165 596551998 596552149 7.110000e-31 145
13 TraesCS5D01G415000 chr7B 95.238 168 5 2 2046 2211 649864470 649864636 1.880000e-66 263
14 TraesCS5D01G415000 chr7D 93.567 171 8 2 2043 2211 456622421 456622590 4.070000e-63 252
15 TraesCS5D01G415000 chr7D 89.937 159 15 1 172 330 521900711 521900868 1.160000e-48 204
16 TraesCS5D01G415000 chr3B 93.567 171 8 2 2043 2211 268742892 268743061 4.070000e-63 252
17 TraesCS5D01G415000 chr3B 92.135 178 10 4 2046 2222 690013568 690013742 5.270000e-62 248
18 TraesCS5D01G415000 chr1B 93.567 171 8 2 2043 2211 225584943 225584774 4.070000e-63 252
19 TraesCS5D01G415000 chr2B 93.023 172 8 3 2046 2215 69689338 69689507 5.270000e-62 248
20 TraesCS5D01G415000 chr6B 92.529 174 9 3 2047 2218 152213160 152212989 1.900000e-61 246
21 TraesCS5D01G415000 chr7A 90.000 170 14 3 161 328 32060509 32060341 1.490000e-52 217
22 TraesCS5D01G415000 chr6D 89.506 162 17 0 167 328 24266883 24267044 3.220000e-49 206
23 TraesCS5D01G415000 chr6D 96.629 89 1 1 1943 2029 78083165 78083077 1.980000e-31 147
24 TraesCS5D01G415000 chr6D 91.509 106 6 2 1944 2047 460573353 460573457 2.560000e-30 143
25 TraesCS5D01G415000 chr2D 89.571 163 14 3 168 330 423348522 423348363 1.160000e-48 204
26 TraesCS5D01G415000 chr4A 89.024 164 17 1 165 328 100636547 100636385 4.160000e-48 202
27 TraesCS5D01G415000 chr4A 95.604 91 2 1 1943 2031 556768041 556767951 7.110000e-31 145
28 TraesCS5D01G415000 chr1D 95.789 95 2 1 1945 2037 440050358 440050452 4.250000e-33 152
29 TraesCS5D01G415000 chr1D 94.737 95 2 2 1944 2036 355081130 355081223 7.110000e-31 145
30 TraesCS5D01G415000 chr1D 87.931 116 10 3 1925 2039 220878773 220878661 1.540000e-27 134
31 TraesCS5D01G415000 chr3D 96.552 87 3 0 1944 2030 112712675 112712761 7.110000e-31 145
32 TraesCS5D01G415000 chr4B 93.814 97 2 3 1938 2030 106975849 106975945 2.560000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G415000 chr5D 477320259 477322726 2467 False 4558.000000 4558 100.000000 1 2468 1 chr5D.!!$F3 2467
1 TraesCS5D01G415000 chr5B 584898770 584900550 1780 False 1123.500000 2056 91.965500 346 2340 2 chr5B.!!$F3 1994
2 TraesCS5D01G415000 chr5A 596551998 596554021 2023 False 807.666667 2032 86.679333 23 2468 3 chr5A.!!$F1 2445

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
937 999 0.105593 ATCCGCTGATCATTCGCTGT 59.894 50.0 10.84 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2356 2455 0.039978 TTGTTGGCGTTGGCGTTATG 60.04 50.0 0.0 0.0 41.24 1.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 6.480763 AGTTTCTTCCCCACAAAAACAAAAT 58.519 32.000 0.00 0.00 33.37 1.82
59 60 5.423886 TCTTCCCCACAAAAACAAAATGAC 58.576 37.500 0.00 0.00 0.00 3.06
77 78 4.085357 TGACACTGTAAGCAGGTGAAAT 57.915 40.909 0.00 0.00 46.62 2.17
84 85 4.575885 TGTAAGCAGGTGAAATGTACTCC 58.424 43.478 0.00 0.00 0.00 3.85
88 89 2.162408 GCAGGTGAAATGTACTCCAAGC 59.838 50.000 0.00 0.00 0.00 4.01
89 90 3.411446 CAGGTGAAATGTACTCCAAGCA 58.589 45.455 0.00 0.00 0.00 3.91
95 96 6.314784 GTGAAATGTACTCCAAGCAATGTAC 58.685 40.000 0.00 0.00 36.69 2.90
96 97 5.121611 TGAAATGTACTCCAAGCAATGTACG 59.878 40.000 0.00 0.00 38.35 3.67
97 98 3.945981 TGTACTCCAAGCAATGTACGA 57.054 42.857 0.00 0.00 38.35 3.43
98 99 3.845178 TGTACTCCAAGCAATGTACGAG 58.155 45.455 0.00 0.00 38.35 4.18
99 100 3.257375 TGTACTCCAAGCAATGTACGAGT 59.743 43.478 0.00 0.00 38.35 4.18
104 110 2.609459 CCAAGCAATGTACGAGTCCATC 59.391 50.000 0.00 0.00 0.00 3.51
113 119 7.095607 GCAATGTACGAGTCCATCTAAAATAGG 60.096 40.741 0.00 0.00 0.00 2.57
131 137 0.924090 GGACGAGCACGAATCATGAC 59.076 55.000 11.40 0.00 42.66 3.06
135 141 1.293924 GAGCACGAATCATGACTGGG 58.706 55.000 0.00 0.00 0.00 4.45
141 147 1.442526 GAATCATGACTGGGGCTGCG 61.443 60.000 0.00 0.00 0.00 5.18
165 175 2.989166 ACCGTCCGTCGTTATCTTTTTC 59.011 45.455 0.00 0.00 37.94 2.29
166 176 2.988493 CCGTCCGTCGTTATCTTTTTCA 59.012 45.455 0.00 0.00 37.94 2.69
167 177 3.615496 CCGTCCGTCGTTATCTTTTTCAT 59.385 43.478 0.00 0.00 37.94 2.57
168 178 4.092383 CCGTCCGTCGTTATCTTTTTCATT 59.908 41.667 0.00 0.00 37.94 2.57
169 179 5.289193 CCGTCCGTCGTTATCTTTTTCATTA 59.711 40.000 0.00 0.00 37.94 1.90
171 181 7.167968 CCGTCCGTCGTTATCTTTTTCATTATA 59.832 37.037 0.00 0.00 37.94 0.98
172 182 8.205948 CGTCCGTCGTTATCTTTTTCATTATAG 58.794 37.037 0.00 0.00 34.52 1.31
173 183 9.028185 GTCCGTCGTTATCTTTTTCATTATAGT 57.972 33.333 0.00 0.00 0.00 2.12
174 184 9.590451 TCCGTCGTTATCTTTTTCATTATAGTT 57.410 29.630 0.00 0.00 0.00 2.24
224 234 9.561069 TTTTAAGAATATCACATCTAAGCTCCC 57.439 33.333 0.00 0.00 0.00 4.30
225 235 6.753913 AAGAATATCACATCTAAGCTCCCA 57.246 37.500 0.00 0.00 0.00 4.37
226 236 6.107901 AGAATATCACATCTAAGCTCCCAC 57.892 41.667 0.00 0.00 0.00 4.61
227 237 5.604231 AGAATATCACATCTAAGCTCCCACA 59.396 40.000 0.00 0.00 0.00 4.17
228 238 5.894298 ATATCACATCTAAGCTCCCACAA 57.106 39.130 0.00 0.00 0.00 3.33
229 239 4.574674 ATCACATCTAAGCTCCCACAAA 57.425 40.909 0.00 0.00 0.00 2.83
230 240 4.574674 TCACATCTAAGCTCCCACAAAT 57.425 40.909 0.00 0.00 0.00 2.32
231 241 5.692115 TCACATCTAAGCTCCCACAAATA 57.308 39.130 0.00 0.00 0.00 1.40
232 242 5.428253 TCACATCTAAGCTCCCACAAATAC 58.572 41.667 0.00 0.00 0.00 1.89
233 243 5.045942 TCACATCTAAGCTCCCACAAATACA 60.046 40.000 0.00 0.00 0.00 2.29
234 244 5.824624 CACATCTAAGCTCCCACAAATACAT 59.175 40.000 0.00 0.00 0.00 2.29
235 245 6.992123 CACATCTAAGCTCCCACAAATACATA 59.008 38.462 0.00 0.00 0.00 2.29
236 246 7.498900 CACATCTAAGCTCCCACAAATACATAA 59.501 37.037 0.00 0.00 0.00 1.90
237 247 8.220559 ACATCTAAGCTCCCACAAATACATAAT 58.779 33.333 0.00 0.00 0.00 1.28
238 248 9.725019 CATCTAAGCTCCCACAAATACATAATA 57.275 33.333 0.00 0.00 0.00 0.98
239 249 9.726438 ATCTAAGCTCCCACAAATACATAATAC 57.274 33.333 0.00 0.00 0.00 1.89
240 250 8.154856 TCTAAGCTCCCACAAATACATAATACC 58.845 37.037 0.00 0.00 0.00 2.73
241 251 5.305585 AGCTCCCACAAATACATAATACCG 58.694 41.667 0.00 0.00 0.00 4.02
242 252 4.083484 GCTCCCACAAATACATAATACCGC 60.083 45.833 0.00 0.00 0.00 5.68
243 253 5.037383 TCCCACAAATACATAATACCGCA 57.963 39.130 0.00 0.00 0.00 5.69
244 254 5.437946 TCCCACAAATACATAATACCGCAA 58.562 37.500 0.00 0.00 0.00 4.85
245 255 6.065374 TCCCACAAATACATAATACCGCAAT 58.935 36.000 0.00 0.00 0.00 3.56
246 256 7.225011 TCCCACAAATACATAATACCGCAATA 58.775 34.615 0.00 0.00 0.00 1.90
247 257 7.720074 TCCCACAAATACATAATACCGCAATAA 59.280 33.333 0.00 0.00 0.00 1.40
248 258 8.353684 CCCACAAATACATAATACCGCAATAAA 58.646 33.333 0.00 0.00 0.00 1.40
249 259 9.737427 CCACAAATACATAATACCGCAATAAAA 57.263 29.630 0.00 0.00 0.00 1.52
296 306 8.608844 AAAATAAACCACAAACAAAGTGAACA 57.391 26.923 0.00 0.00 39.30 3.18
297 307 8.785329 AAATAAACCACAAACAAAGTGAACAT 57.215 26.923 0.00 0.00 39.30 2.71
298 308 8.419076 AATAAACCACAAACAAAGTGAACATC 57.581 30.769 0.00 0.00 39.30 3.06
299 309 5.398603 AACCACAAACAAAGTGAACATCA 57.601 34.783 0.00 0.00 39.30 3.07
300 310 4.997565 ACCACAAACAAAGTGAACATCAG 58.002 39.130 0.00 0.00 39.30 2.90
301 311 4.462483 ACCACAAACAAAGTGAACATCAGT 59.538 37.500 0.00 0.00 39.30 3.41
302 312 5.047377 ACCACAAACAAAGTGAACATCAGTT 60.047 36.000 0.00 0.00 41.46 3.16
304 314 7.032580 CCACAAACAAAGTGAACATCAGTTTA 58.967 34.615 11.63 0.00 45.35 2.01
305 315 7.220683 CCACAAACAAAGTGAACATCAGTTTAG 59.779 37.037 11.63 9.39 45.35 1.85
306 316 7.967854 CACAAACAAAGTGAACATCAGTTTAGA 59.032 33.333 11.63 0.00 45.35 2.10
307 317 8.686334 ACAAACAAAGTGAACATCAGTTTAGAT 58.314 29.630 11.63 0.95 45.35 1.98
308 318 8.961092 CAAACAAAGTGAACATCAGTTTAGATG 58.039 33.333 11.63 2.62 45.35 2.90
337 347 8.144478 ACATAACTATGTCACATATCACAGACC 58.856 37.037 0.00 0.00 42.96 3.85
338 348 5.537300 ACTATGTCACATATCACAGACCC 57.463 43.478 0.00 0.00 0.00 4.46
339 349 3.845781 ATGTCACATATCACAGACCCC 57.154 47.619 0.00 0.00 0.00 4.95
340 350 1.480545 TGTCACATATCACAGACCCCG 59.519 52.381 0.00 0.00 0.00 5.73
341 351 1.480954 GTCACATATCACAGACCCCGT 59.519 52.381 0.00 0.00 0.00 5.28
342 352 2.093658 GTCACATATCACAGACCCCGTT 60.094 50.000 0.00 0.00 0.00 4.44
343 353 3.131577 GTCACATATCACAGACCCCGTTA 59.868 47.826 0.00 0.00 0.00 3.18
344 354 3.964688 TCACATATCACAGACCCCGTTAT 59.035 43.478 0.00 0.00 0.00 1.89
345 355 5.010314 GTCACATATCACAGACCCCGTTATA 59.990 44.000 0.00 0.00 0.00 0.98
346 356 5.010314 TCACATATCACAGACCCCGTTATAC 59.990 44.000 0.00 0.00 0.00 1.47
347 357 4.897076 ACATATCACAGACCCCGTTATACA 59.103 41.667 0.00 0.00 0.00 2.29
348 358 5.010719 ACATATCACAGACCCCGTTATACAG 59.989 44.000 0.00 0.00 0.00 2.74
349 359 3.090210 TCACAGACCCCGTTATACAGA 57.910 47.619 0.00 0.00 0.00 3.41
350 360 3.433343 TCACAGACCCCGTTATACAGAA 58.567 45.455 0.00 0.00 0.00 3.02
390 400 0.874175 CAGACGCCAAACAGTCACGA 60.874 55.000 0.00 0.00 39.67 4.35
395 405 2.288579 ACGCCAAACAGTCACGAGAATA 60.289 45.455 0.00 0.00 0.00 1.75
405 415 0.390603 CACGAGAATACACCCGGCAA 60.391 55.000 0.00 0.00 0.00 4.52
432 442 1.462283 CATCCAAGCAGTCACGTCAAG 59.538 52.381 0.00 0.00 0.00 3.02
485 496 2.577606 TTCTCAAATCCGGAAAGGCA 57.422 45.000 9.01 0.00 40.77 4.75
498 509 0.463654 AAAGGCACAGTCGCTCACAA 60.464 50.000 0.00 0.00 0.00 3.33
533 545 3.168528 ACCGGTGCACCAGACCTT 61.169 61.111 34.16 5.34 35.14 3.50
535 547 1.375523 CCGGTGCACCAGACCTTAC 60.376 63.158 34.16 5.28 35.14 2.34
562 578 4.235762 ACACCGCCAACTCACGCT 62.236 61.111 0.00 0.00 0.00 5.07
567 583 1.080093 CGCCAACTCACGCTCCTAA 60.080 57.895 0.00 0.00 0.00 2.69
576 592 2.280186 CGCTCCTAATCCGGTGCC 60.280 66.667 0.00 0.00 39.71 5.01
725 765 1.054406 CCCCGTCACCTACCATCCAT 61.054 60.000 0.00 0.00 0.00 3.41
726 766 0.393077 CCCGTCACCTACCATCCATC 59.607 60.000 0.00 0.00 0.00 3.51
727 767 0.393077 CCGTCACCTACCATCCATCC 59.607 60.000 0.00 0.00 0.00 3.51
728 768 1.119684 CGTCACCTACCATCCATCCA 58.880 55.000 0.00 0.00 0.00 3.41
729 769 1.694150 CGTCACCTACCATCCATCCAT 59.306 52.381 0.00 0.00 0.00 3.41
792 850 4.284550 CCACCCCACCACCACCAG 62.285 72.222 0.00 0.00 0.00 4.00
806 867 1.081376 ACCAGAGACGCTCGAAACG 60.081 57.895 6.00 6.00 35.36 3.60
866 927 4.321082 CCTTATTAAACCAAAAACCCGCGA 60.321 41.667 8.23 0.00 0.00 5.87
913 974 0.109272 CACAGCGTCCGTGATAGTGT 60.109 55.000 0.00 0.00 36.43 3.55
937 999 0.105593 ATCCGCTGATCATTCGCTGT 59.894 50.000 10.84 0.00 0.00 4.40
945 1007 1.191204 GATCATTCGCTGTTAGCTCGC 59.809 52.381 0.00 0.00 39.60 5.03
1457 1529 4.988598 CCACAGCAAGGCGTCGGT 62.989 66.667 0.00 0.00 0.00 4.69
1536 1620 3.609879 GCTTGCCAAAAATTGTTCATGCC 60.610 43.478 0.00 0.00 32.02 4.40
1616 1703 3.927758 TCATGCATGTGTAATTTGCTTGC 59.072 39.130 25.43 8.09 39.81 4.01
1735 1822 3.434309 AGATATTTGCAACTTGCCACCT 58.566 40.909 11.29 0.00 44.23 4.00
1831 1918 3.485216 GGCGACATGATTTTTCCAGTACG 60.485 47.826 0.00 0.00 0.00 3.67
1861 1949 0.096454 CACATGCGCAGACATCAGTG 59.904 55.000 18.32 9.20 0.00 3.66
1888 1977 0.253610 ATTCGTATTGCCACCCCGAA 59.746 50.000 0.00 0.00 41.16 4.30
1943 2040 7.772332 ATTGATATTCCAGTCGAGTTTACAC 57.228 36.000 0.00 0.00 0.00 2.90
1948 2045 5.368256 TTCCAGTCGAGTTTACACTACTC 57.632 43.478 0.00 0.00 38.88 2.59
1949 2046 3.755378 TCCAGTCGAGTTTACACTACTCC 59.245 47.826 0.00 0.00 39.03 3.85
1951 2048 4.158025 CCAGTCGAGTTTACACTACTCCAT 59.842 45.833 0.00 0.00 39.03 3.41
1953 2050 4.398673 AGTCGAGTTTACACTACTCCATCC 59.601 45.833 0.00 0.00 39.03 3.51
1955 2052 3.128242 CGAGTTTACACTACTCCATCCGT 59.872 47.826 0.00 0.00 39.03 4.69
1956 2053 4.670347 GAGTTTACACTACTCCATCCGTC 58.330 47.826 0.00 0.00 36.79 4.79
1957 2054 3.446516 AGTTTACACTACTCCATCCGTCC 59.553 47.826 0.00 0.00 0.00 4.79
1958 2055 2.062971 TACACTACTCCATCCGTCCC 57.937 55.000 0.00 0.00 0.00 4.46
1959 2056 0.040646 ACACTACTCCATCCGTCCCA 59.959 55.000 0.00 0.00 0.00 4.37
1960 2057 1.343075 ACACTACTCCATCCGTCCCAT 60.343 52.381 0.00 0.00 0.00 4.00
1962 2059 2.963101 CACTACTCCATCCGTCCCATAA 59.037 50.000 0.00 0.00 0.00 1.90
1964 2061 4.770531 CACTACTCCATCCGTCCCATAATA 59.229 45.833 0.00 0.00 0.00 0.98
1965 2062 5.422331 CACTACTCCATCCGTCCCATAATAT 59.578 44.000 0.00 0.00 0.00 1.28
1967 2064 7.123697 CACTACTCCATCCGTCCCATAATATAA 59.876 40.741 0.00 0.00 0.00 0.98
1968 2065 6.546428 ACTCCATCCGTCCCATAATATAAG 57.454 41.667 0.00 0.00 0.00 1.73
1969 2066 6.261435 ACTCCATCCGTCCCATAATATAAGA 58.739 40.000 0.00 0.00 0.00 2.10
1970 2067 6.381420 ACTCCATCCGTCCCATAATATAAGAG 59.619 42.308 0.00 0.00 0.00 2.85
1971 2068 5.128827 TCCATCCGTCCCATAATATAAGAGC 59.871 44.000 0.00 0.00 0.00 4.09
1972 2069 4.713824 TCCGTCCCATAATATAAGAGCG 57.286 45.455 0.00 0.00 0.00 5.03
1973 2070 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
1974 2071 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
1975 2072 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
1976 2073 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
1977 2074 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
1978 2075 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
1979 2076 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
1980 2077 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
1981 2078 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
1982 2079 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
1983 2080 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
1986 2083 8.542497 AATATAAGAGCGTTTTTGACACTACA 57.458 30.769 0.00 0.00 0.00 2.74
1987 2084 6.854496 ATAAGAGCGTTTTTGACACTACAA 57.146 33.333 0.00 0.00 0.00 2.41
1988 2085 4.795970 AGAGCGTTTTTGACACTACAAG 57.204 40.909 0.00 0.00 0.00 3.16
1989 2086 4.189231 AGAGCGTTTTTGACACTACAAGT 58.811 39.130 0.00 0.00 0.00 3.16
2017 2114 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
2018 2115 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
2019 2116 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
2020 2117 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
2021 2118 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
2022 2119 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
2023 2120 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
2024 2121 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2037 2134 4.635223 ACGGAGGGAGTAGTTTACAAAAC 58.365 43.478 0.00 0.00 0.00 2.43
2038 2135 3.676646 CGGAGGGAGTAGTTTACAAAACG 59.323 47.826 0.00 0.00 0.00 3.60
2039 2136 3.434641 GGAGGGAGTAGTTTACAAAACGC 59.565 47.826 0.00 0.00 0.00 4.84
2040 2137 4.313282 GAGGGAGTAGTTTACAAAACGCT 58.687 43.478 0.00 0.00 0.00 5.07
2041 2138 4.062991 AGGGAGTAGTTTACAAAACGCTG 58.937 43.478 7.16 0.00 0.00 5.18
2042 2139 3.364664 GGGAGTAGTTTACAAAACGCTGC 60.365 47.826 10.60 10.60 0.00 5.25
2043 2140 3.497262 GGAGTAGTTTACAAAACGCTGCT 59.503 43.478 0.00 0.00 0.00 4.24
2044 2141 4.687483 GGAGTAGTTTACAAAACGCTGCTA 59.313 41.667 0.00 0.00 0.00 3.49
2045 2142 5.389202 GGAGTAGTTTACAAAACGCTGCTAC 60.389 44.000 0.00 0.00 0.00 3.58
2046 2143 5.051816 AGTAGTTTACAAAACGCTGCTACA 58.948 37.500 0.00 0.00 32.48 2.74
2047 2144 4.468095 AGTTTACAAAACGCTGCTACAG 57.532 40.909 0.00 0.00 34.12 2.74
2048 2145 3.875134 AGTTTACAAAACGCTGCTACAGT 59.125 39.130 0.00 0.00 33.43 3.55
2049 2146 3.870723 TTACAAAACGCTGCTACAGTG 57.129 42.857 6.60 6.60 46.11 3.66
2050 2147 0.944386 ACAAAACGCTGCTACAGTGG 59.056 50.000 12.35 0.51 45.11 4.00
2051 2148 0.385974 CAAAACGCTGCTACAGTGGC 60.386 55.000 12.35 0.99 45.11 5.01
2056 2153 2.510238 CTGCTACAGTGGCGGCTC 60.510 66.667 11.43 6.75 0.00 4.70
2057 2154 4.082523 TGCTACAGTGGCGGCTCC 62.083 66.667 11.43 0.09 0.00 4.70
2058 2155 4.082523 GCTACAGTGGCGGCTCCA 62.083 66.667 11.43 0.00 44.18 3.86
2065 2162 2.763215 TGGCGGCTCCAGGAATTT 59.237 55.556 11.43 0.00 40.72 1.82
2066 2163 1.678635 TGGCGGCTCCAGGAATTTG 60.679 57.895 11.43 0.00 40.72 2.32
2067 2164 2.491621 GCGGCTCCAGGAATTTGC 59.508 61.111 0.00 0.00 0.00 3.68
2068 2165 2.342650 GCGGCTCCAGGAATTTGCA 61.343 57.895 1.09 0.00 0.00 4.08
2069 2166 1.876497 GCGGCTCCAGGAATTTGCAA 61.876 55.000 0.00 0.00 0.00 4.08
2070 2167 0.109132 CGGCTCCAGGAATTTGCAAC 60.109 55.000 0.00 0.00 0.00 4.17
2071 2168 0.247460 GGCTCCAGGAATTTGCAACC 59.753 55.000 0.00 0.00 0.00 3.77
2072 2169 0.109132 GCTCCAGGAATTTGCAACCG 60.109 55.000 0.00 0.00 0.00 4.44
2073 2170 0.527565 CTCCAGGAATTTGCAACCGG 59.472 55.000 0.00 0.00 0.00 5.28
2074 2171 0.897863 TCCAGGAATTTGCAACCGGG 60.898 55.000 15.02 15.02 39.67 5.73
2075 2172 1.184970 CCAGGAATTTGCAACCGGGT 61.185 55.000 6.32 0.00 35.05 5.28
2076 2173 1.540267 CAGGAATTTGCAACCGGGTA 58.460 50.000 6.32 0.00 0.00 3.69
2077 2174 2.099405 CAGGAATTTGCAACCGGGTAT 58.901 47.619 6.32 0.00 0.00 2.73
2078 2175 2.495669 CAGGAATTTGCAACCGGGTATT 59.504 45.455 6.32 0.00 0.00 1.89
2079 2176 2.758423 AGGAATTTGCAACCGGGTATTC 59.242 45.455 6.32 5.15 0.00 1.75
2080 2177 2.494073 GGAATTTGCAACCGGGTATTCA 59.506 45.455 17.14 6.83 0.00 2.57
2081 2178 3.132111 GGAATTTGCAACCGGGTATTCAT 59.868 43.478 17.14 0.00 0.00 2.57
2082 2179 4.339814 GGAATTTGCAACCGGGTATTCATA 59.660 41.667 17.14 5.72 0.00 2.15
2083 2180 5.010617 GGAATTTGCAACCGGGTATTCATAT 59.989 40.000 17.14 7.34 0.00 1.78
2084 2181 4.909696 TTTGCAACCGGGTATTCATATG 57.090 40.909 6.32 0.00 0.00 1.78
2085 2182 3.569194 TGCAACCGGGTATTCATATGT 57.431 42.857 6.32 0.00 0.00 2.29
2086 2183 4.691326 TGCAACCGGGTATTCATATGTA 57.309 40.909 6.32 0.00 0.00 2.29
2087 2184 5.235850 TGCAACCGGGTATTCATATGTAT 57.764 39.130 6.32 0.99 0.00 2.29
2088 2185 5.626142 TGCAACCGGGTATTCATATGTATT 58.374 37.500 6.32 0.00 0.00 1.89
2089 2186 5.703592 TGCAACCGGGTATTCATATGTATTC 59.296 40.000 6.32 0.00 0.00 1.75
2090 2187 5.703592 GCAACCGGGTATTCATATGTATTCA 59.296 40.000 6.32 0.00 0.00 2.57
2091 2188 6.374333 GCAACCGGGTATTCATATGTATTCAT 59.626 38.462 6.32 0.00 38.00 2.57
2092 2189 7.094377 GCAACCGGGTATTCATATGTATTCATT 60.094 37.037 6.32 0.00 35.70 2.57
2093 2190 8.792633 CAACCGGGTATTCATATGTATTCATTT 58.207 33.333 6.32 0.00 35.70 2.32
2094 2191 8.934023 ACCGGGTATTCATATGTATTCATTTT 57.066 30.769 6.32 0.00 35.70 1.82
2095 2192 8.792633 ACCGGGTATTCATATGTATTCATTTTG 58.207 33.333 6.32 0.00 35.70 2.44
2096 2193 8.792633 CCGGGTATTCATATGTATTCATTTTGT 58.207 33.333 1.90 0.00 35.70 2.83
2097 2194 9.825972 CGGGTATTCATATGTATTCATTTTGTC 57.174 33.333 1.90 0.00 35.70 3.18
2152 2249 9.868277 TCACTTTTATCAAAATCAACACTGTTT 57.132 25.926 0.00 0.00 0.00 2.83
2166 2263 8.417780 TCAACACTGTTTTGTAAAAATCATGG 57.582 30.769 6.58 0.00 0.00 3.66
2167 2264 7.493971 TCAACACTGTTTTGTAAAAATCATGGG 59.506 33.333 6.58 0.00 0.00 4.00
2168 2265 6.883744 ACACTGTTTTGTAAAAATCATGGGT 58.116 32.000 0.00 0.00 0.00 4.51
2169 2266 8.012957 ACACTGTTTTGTAAAAATCATGGGTA 57.987 30.769 0.00 0.00 0.00 3.69
2170 2267 8.646900 ACACTGTTTTGTAAAAATCATGGGTAT 58.353 29.630 0.00 0.00 0.00 2.73
2171 2268 9.487790 CACTGTTTTGTAAAAATCATGGGTATT 57.512 29.630 0.00 0.00 0.00 1.89
2172 2269 9.705290 ACTGTTTTGTAAAAATCATGGGTATTC 57.295 29.630 0.00 0.00 0.00 1.75
2173 2270 9.703892 CTGTTTTGTAAAAATCATGGGTATTCA 57.296 29.630 0.00 0.00 0.00 2.57
2174 2271 9.482627 TGTTTTGTAAAAATCATGGGTATTCAC 57.517 29.630 0.00 0.00 0.00 3.18
2175 2272 9.482627 GTTTTGTAAAAATCATGGGTATTCACA 57.517 29.630 0.00 0.00 0.00 3.58
2192 2289 7.920738 GTATTCACATGAAGACCCAAGAATAC 58.079 38.462 7.95 0.00 39.58 1.89
2193 2290 4.843728 TCACATGAAGACCCAAGAATACC 58.156 43.478 0.00 0.00 0.00 2.73
2194 2291 3.947834 CACATGAAGACCCAAGAATACCC 59.052 47.826 0.00 0.00 0.00 3.69
2195 2292 3.053619 ACATGAAGACCCAAGAATACCCC 60.054 47.826 0.00 0.00 0.00 4.95
2196 2293 2.929301 TGAAGACCCAAGAATACCCCT 58.071 47.619 0.00 0.00 0.00 4.79
2197 2294 4.083080 TGAAGACCCAAGAATACCCCTA 57.917 45.455 0.00 0.00 0.00 3.53
2198 2295 4.037927 TGAAGACCCAAGAATACCCCTAG 58.962 47.826 0.00 0.00 0.00 3.02
2199 2296 2.409570 AGACCCAAGAATACCCCTAGC 58.590 52.381 0.00 0.00 0.00 3.42
2200 2297 1.070289 GACCCAAGAATACCCCTAGCG 59.930 57.143 0.00 0.00 0.00 4.26
2201 2298 0.250338 CCCAAGAATACCCCTAGCGC 60.250 60.000 0.00 0.00 0.00 5.92
2202 2299 0.250338 CCAAGAATACCCCTAGCGCC 60.250 60.000 2.29 0.00 0.00 6.53
2203 2300 0.600255 CAAGAATACCCCTAGCGCCG 60.600 60.000 2.29 0.00 0.00 6.46
2204 2301 2.357154 GAATACCCCTAGCGCCGC 60.357 66.667 2.29 0.00 0.00 6.53
2205 2302 3.878374 GAATACCCCTAGCGCCGCC 62.878 68.421 4.98 0.00 0.00 6.13
2239 2336 2.350772 CCACCAAAGTTCGCAAGTCATC 60.351 50.000 0.00 0.00 39.48 2.92
2319 2418 1.808945 TCTCGTCTTTGACTCCGTACC 59.191 52.381 0.00 0.00 0.00 3.34
2320 2419 1.811359 CTCGTCTTTGACTCCGTACCT 59.189 52.381 0.00 0.00 0.00 3.08
2321 2420 1.538512 TCGTCTTTGACTCCGTACCTG 59.461 52.381 0.00 0.00 0.00 4.00
2351 2450 5.981088 TTGCATCATACCAAACAACATCT 57.019 34.783 0.00 0.00 0.00 2.90
2352 2451 5.565592 TGCATCATACCAAACAACATCTC 57.434 39.130 0.00 0.00 0.00 2.75
2353 2452 5.008980 TGCATCATACCAAACAACATCTCA 58.991 37.500 0.00 0.00 0.00 3.27
2354 2453 5.476254 TGCATCATACCAAACAACATCTCAA 59.524 36.000 0.00 0.00 0.00 3.02
2355 2454 6.032094 GCATCATACCAAACAACATCTCAAG 58.968 40.000 0.00 0.00 0.00 3.02
2356 2455 5.627499 TCATACCAAACAACATCTCAAGC 57.373 39.130 0.00 0.00 0.00 4.01
2357 2456 5.069318 TCATACCAAACAACATCTCAAGCA 58.931 37.500 0.00 0.00 0.00 3.91
2358 2457 5.711506 TCATACCAAACAACATCTCAAGCAT 59.288 36.000 0.00 0.00 0.00 3.79
2359 2458 6.883756 TCATACCAAACAACATCTCAAGCATA 59.116 34.615 0.00 0.00 0.00 3.14
2360 2459 7.392953 TCATACCAAACAACATCTCAAGCATAA 59.607 33.333 0.00 0.00 0.00 1.90
2361 2460 5.772521 ACCAAACAACATCTCAAGCATAAC 58.227 37.500 0.00 0.00 0.00 1.89
2362 2461 4.853196 CCAAACAACATCTCAAGCATAACG 59.147 41.667 0.00 0.00 0.00 3.18
2363 2462 3.747099 ACAACATCTCAAGCATAACGC 57.253 42.857 0.00 0.00 42.91 4.84
2364 2463 2.420022 ACAACATCTCAAGCATAACGCC 59.580 45.455 0.00 0.00 44.04 5.68
2365 2464 2.401583 ACATCTCAAGCATAACGCCA 57.598 45.000 0.00 0.00 44.04 5.69
2366 2465 2.710377 ACATCTCAAGCATAACGCCAA 58.290 42.857 0.00 0.00 44.04 4.52
2377 2476 0.039978 TAACGCCAACGCCAACAATG 60.040 50.000 0.00 0.00 45.53 2.82
2400 2499 7.860918 TGTATTCTACTGAGTTCAGATACGT 57.139 36.000 15.63 0.00 46.59 3.57
2411 2510 6.368791 TGAGTTCAGATACGTTCATTGAAAGG 59.631 38.462 15.26 7.11 30.43 3.11
2416 2515 7.561251 TCAGATACGTTCATTGAAAGGGAATA 58.439 34.615 15.26 1.28 0.00 1.75
2425 2524 3.433306 TGAAAGGGAATACCACCACAG 57.567 47.619 0.00 0.00 43.89 3.66
2442 2541 2.613595 CACAGCGGCTTAGATTGCATTA 59.386 45.455 0.00 0.00 0.00 1.90
2443 2542 3.065233 CACAGCGGCTTAGATTGCATTAA 59.935 43.478 0.00 0.00 0.00 1.40
2444 2543 3.885297 ACAGCGGCTTAGATTGCATTAAT 59.115 39.130 0.00 0.00 0.00 1.40
2445 2544 4.339247 ACAGCGGCTTAGATTGCATTAATT 59.661 37.500 0.00 0.00 0.00 1.40
2446 2545 5.530915 ACAGCGGCTTAGATTGCATTAATTA 59.469 36.000 0.00 0.00 0.00 1.40
2451 2550 7.293745 CGGCTTAGATTGCATTAATTAGACAG 58.706 38.462 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 7.419634 CCTTTCAAATTGAAGGACCCCTAAAAA 60.420 37.037 17.74 0.00 37.70 1.94
5 6 6.042666 CCTTTCAAATTGAAGGACCCCTAAAA 59.957 38.462 17.74 0.00 37.70 1.52
6 7 5.542251 CCTTTCAAATTGAAGGACCCCTAAA 59.458 40.000 17.74 0.00 37.70 1.85
7 8 5.083821 CCTTTCAAATTGAAGGACCCCTAA 58.916 41.667 17.74 0.00 37.70 2.69
8 9 4.355588 TCCTTTCAAATTGAAGGACCCCTA 59.644 41.667 17.74 0.00 37.70 3.53
9 10 3.142028 TCCTTTCAAATTGAAGGACCCCT 59.858 43.478 17.74 0.00 37.70 4.79
10 11 3.506398 TCCTTTCAAATTGAAGGACCCC 58.494 45.455 17.74 0.00 37.70 4.95
11 12 4.588951 ACTTCCTTTCAAATTGAAGGACCC 59.411 41.667 17.74 0.00 37.70 4.46
12 13 5.791336 ACTTCCTTTCAAATTGAAGGACC 57.209 39.130 17.74 0.00 37.70 4.46
13 14 7.492524 AGAAACTTCCTTTCAAATTGAAGGAC 58.507 34.615 17.74 10.03 40.88 3.85
14 15 7.660030 AGAAACTTCCTTTCAAATTGAAGGA 57.340 32.000 17.74 17.36 40.88 3.36
15 16 7.439356 GGAAGAAACTTCCTTTCAAATTGAAGG 59.561 37.037 19.41 10.41 40.88 3.46
16 17 7.439356 GGGAAGAAACTTCCTTTCAAATTGAAG 59.561 37.037 23.72 7.63 40.88 3.02
17 18 7.272244 GGGAAGAAACTTCCTTTCAAATTGAA 58.728 34.615 23.72 4.03 40.88 2.69
18 19 6.183360 GGGGAAGAAACTTCCTTTCAAATTGA 60.183 38.462 23.72 0.00 40.88 2.57
19 20 5.991606 GGGGAAGAAACTTCCTTTCAAATTG 59.008 40.000 23.72 0.00 40.88 2.32
20 21 5.665360 TGGGGAAGAAACTTCCTTTCAAATT 59.335 36.000 23.72 0.00 40.88 1.82
21 22 5.070446 GTGGGGAAGAAACTTCCTTTCAAAT 59.930 40.000 23.72 0.00 40.88 2.32
26 27 3.680777 TGTGGGGAAGAAACTTCCTTT 57.319 42.857 23.72 0.00 38.61 3.11
56 57 3.552132 TTTCACCTGCTTACAGTGTCA 57.448 42.857 0.00 0.00 42.81 3.58
59 60 4.997395 AGTACATTTCACCTGCTTACAGTG 59.003 41.667 0.00 0.00 42.81 3.66
77 78 3.257375 ACTCGTACATTGCTTGGAGTACA 59.743 43.478 0.00 0.00 37.32 2.90
84 85 3.525537 AGATGGACTCGTACATTGCTTG 58.474 45.455 0.00 0.00 33.44 4.01
88 89 8.141909 TCCTATTTTAGATGGACTCGTACATTG 58.858 37.037 0.00 0.00 33.44 2.82
89 90 8.142551 GTCCTATTTTAGATGGACTCGTACATT 58.857 37.037 0.00 0.00 43.91 2.71
95 96 5.434352 TCGTCCTATTTTAGATGGACTCG 57.566 43.478 8.98 0.00 44.79 4.18
96 97 5.221263 TGCTCGTCCTATTTTAGATGGACTC 60.221 44.000 8.98 0.49 44.79 3.36
97 98 4.649674 TGCTCGTCCTATTTTAGATGGACT 59.350 41.667 8.98 0.00 44.79 3.85
98 99 4.745620 GTGCTCGTCCTATTTTAGATGGAC 59.254 45.833 0.00 0.00 43.86 4.02
99 100 4.499188 CGTGCTCGTCCTATTTTAGATGGA 60.499 45.833 0.00 0.00 0.00 3.41
104 110 5.041287 TGATTCGTGCTCGTCCTATTTTAG 58.959 41.667 8.17 0.00 38.33 1.85
113 119 1.585668 CAGTCATGATTCGTGCTCGTC 59.414 52.381 8.17 0.00 38.33 4.20
115 121 0.926155 CCAGTCATGATTCGTGCTCG 59.074 55.000 0.00 0.81 38.55 5.03
198 208 9.561069 GGGAGCTTAGATGTGATATTCTTAAAA 57.439 33.333 0.00 0.00 0.00 1.52
199 209 8.713971 TGGGAGCTTAGATGTGATATTCTTAAA 58.286 33.333 0.00 0.00 0.00 1.52
200 210 8.150945 GTGGGAGCTTAGATGTGATATTCTTAA 58.849 37.037 0.00 0.00 0.00 1.85
201 211 7.290014 TGTGGGAGCTTAGATGTGATATTCTTA 59.710 37.037 0.00 0.00 0.00 2.10
202 212 6.100279 TGTGGGAGCTTAGATGTGATATTCTT 59.900 38.462 0.00 0.00 0.00 2.52
203 213 5.604231 TGTGGGAGCTTAGATGTGATATTCT 59.396 40.000 0.00 0.00 0.00 2.40
204 214 5.858381 TGTGGGAGCTTAGATGTGATATTC 58.142 41.667 0.00 0.00 0.00 1.75
205 215 5.894298 TGTGGGAGCTTAGATGTGATATT 57.106 39.130 0.00 0.00 0.00 1.28
206 216 5.894298 TTGTGGGAGCTTAGATGTGATAT 57.106 39.130 0.00 0.00 0.00 1.63
207 217 5.692115 TTTGTGGGAGCTTAGATGTGATA 57.308 39.130 0.00 0.00 0.00 2.15
208 218 4.574674 TTTGTGGGAGCTTAGATGTGAT 57.425 40.909 0.00 0.00 0.00 3.06
209 219 4.574674 ATTTGTGGGAGCTTAGATGTGA 57.425 40.909 0.00 0.00 0.00 3.58
210 220 5.185454 TGTATTTGTGGGAGCTTAGATGTG 58.815 41.667 0.00 0.00 0.00 3.21
211 221 5.435686 TGTATTTGTGGGAGCTTAGATGT 57.564 39.130 0.00 0.00 0.00 3.06
212 222 8.627208 ATTATGTATTTGTGGGAGCTTAGATG 57.373 34.615 0.00 0.00 0.00 2.90
213 223 9.726438 GTATTATGTATTTGTGGGAGCTTAGAT 57.274 33.333 0.00 0.00 0.00 1.98
214 224 8.154856 GGTATTATGTATTTGTGGGAGCTTAGA 58.845 37.037 0.00 0.00 0.00 2.10
215 225 7.117812 CGGTATTATGTATTTGTGGGAGCTTAG 59.882 40.741 0.00 0.00 0.00 2.18
216 226 6.932400 CGGTATTATGTATTTGTGGGAGCTTA 59.068 38.462 0.00 0.00 0.00 3.09
217 227 5.763204 CGGTATTATGTATTTGTGGGAGCTT 59.237 40.000 0.00 0.00 0.00 3.74
218 228 5.305585 CGGTATTATGTATTTGTGGGAGCT 58.694 41.667 0.00 0.00 0.00 4.09
219 229 4.083484 GCGGTATTATGTATTTGTGGGAGC 60.083 45.833 0.00 0.00 0.00 4.70
220 230 5.060506 TGCGGTATTATGTATTTGTGGGAG 58.939 41.667 0.00 0.00 0.00 4.30
221 231 5.037383 TGCGGTATTATGTATTTGTGGGA 57.963 39.130 0.00 0.00 0.00 4.37
222 232 5.759506 TTGCGGTATTATGTATTTGTGGG 57.240 39.130 0.00 0.00 0.00 4.61
223 233 9.737427 TTTTATTGCGGTATTATGTATTTGTGG 57.263 29.630 0.00 0.00 0.00 4.17
270 280 9.057089 TGTTCACTTTGTTTGTGGTTTATTTTT 57.943 25.926 0.00 0.00 36.21 1.94
271 281 8.608844 TGTTCACTTTGTTTGTGGTTTATTTT 57.391 26.923 0.00 0.00 36.21 1.82
272 282 8.785329 ATGTTCACTTTGTTTGTGGTTTATTT 57.215 26.923 0.00 0.00 36.21 1.40
273 283 8.037758 TGATGTTCACTTTGTTTGTGGTTTATT 58.962 29.630 0.00 0.00 36.21 1.40
274 284 7.551585 TGATGTTCACTTTGTTTGTGGTTTAT 58.448 30.769 0.00 0.00 36.21 1.40
275 285 6.925211 TGATGTTCACTTTGTTTGTGGTTTA 58.075 32.000 0.00 0.00 36.21 2.01
276 286 5.788450 TGATGTTCACTTTGTTTGTGGTTT 58.212 33.333 0.00 0.00 36.21 3.27
277 287 5.047377 ACTGATGTTCACTTTGTTTGTGGTT 60.047 36.000 0.00 0.00 36.21 3.67
278 288 4.462483 ACTGATGTTCACTTTGTTTGTGGT 59.538 37.500 0.00 0.00 36.21 4.16
279 289 4.997565 ACTGATGTTCACTTTGTTTGTGG 58.002 39.130 0.00 0.00 36.21 4.17
280 290 6.949578 AAACTGATGTTCACTTTGTTTGTG 57.050 33.333 0.00 0.00 34.96 3.33
281 291 8.050778 TCTAAACTGATGTTCACTTTGTTTGT 57.949 30.769 0.00 0.00 34.96 2.83
282 292 8.961092 CATCTAAACTGATGTTCACTTTGTTTG 58.039 33.333 0.00 0.00 39.05 2.93
312 322 7.600375 GGGTCTGTGATATGTGACATAGTTATG 59.400 40.741 11.32 2.18 39.55 1.90
313 323 7.256332 GGGGTCTGTGATATGTGACATAGTTAT 60.256 40.741 11.32 0.00 0.00 1.89
314 324 6.041637 GGGGTCTGTGATATGTGACATAGTTA 59.958 42.308 11.32 0.00 0.00 2.24
315 325 5.163301 GGGGTCTGTGATATGTGACATAGTT 60.163 44.000 11.32 0.00 0.00 2.24
316 326 4.345257 GGGGTCTGTGATATGTGACATAGT 59.655 45.833 11.32 0.00 0.00 2.12
317 327 4.559502 CGGGGTCTGTGATATGTGACATAG 60.560 50.000 11.32 0.00 0.00 2.23
318 328 3.320826 CGGGGTCTGTGATATGTGACATA 59.679 47.826 7.86 7.86 0.00 2.29
319 329 2.103094 CGGGGTCTGTGATATGTGACAT 59.897 50.000 2.65 2.65 0.00 3.06
320 330 1.480545 CGGGGTCTGTGATATGTGACA 59.519 52.381 0.00 0.00 0.00 3.58
321 331 1.480954 ACGGGGTCTGTGATATGTGAC 59.519 52.381 0.00 0.00 0.00 3.67
322 332 1.860641 ACGGGGTCTGTGATATGTGA 58.139 50.000 0.00 0.00 0.00 3.58
323 333 2.691409 AACGGGGTCTGTGATATGTG 57.309 50.000 0.00 0.00 0.00 3.21
324 334 4.897076 TGTATAACGGGGTCTGTGATATGT 59.103 41.667 0.00 0.00 0.00 2.29
325 335 5.243060 TCTGTATAACGGGGTCTGTGATATG 59.757 44.000 0.00 0.00 0.00 1.78
326 336 5.391256 TCTGTATAACGGGGTCTGTGATAT 58.609 41.667 0.00 0.00 0.00 1.63
327 337 4.795469 TCTGTATAACGGGGTCTGTGATA 58.205 43.478 0.00 0.00 0.00 2.15
328 338 3.638860 TCTGTATAACGGGGTCTGTGAT 58.361 45.455 0.00 0.00 0.00 3.06
329 339 3.090210 TCTGTATAACGGGGTCTGTGA 57.910 47.619 0.00 0.00 0.00 3.58
330 340 3.430374 CCTTCTGTATAACGGGGTCTGTG 60.430 52.174 0.00 0.00 0.00 3.66
331 341 2.764572 CCTTCTGTATAACGGGGTCTGT 59.235 50.000 0.00 0.00 0.00 3.41
332 342 2.483188 GCCTTCTGTATAACGGGGTCTG 60.483 54.545 0.00 0.00 0.00 3.51
333 343 1.761198 GCCTTCTGTATAACGGGGTCT 59.239 52.381 0.00 0.00 0.00 3.85
334 344 1.537562 CGCCTTCTGTATAACGGGGTC 60.538 57.143 0.00 0.00 0.00 4.46
335 345 0.462789 CGCCTTCTGTATAACGGGGT 59.537 55.000 0.00 0.00 0.00 4.95
336 346 0.748450 TCGCCTTCTGTATAACGGGG 59.252 55.000 0.00 0.00 0.00 5.73
337 347 2.404215 CATCGCCTTCTGTATAACGGG 58.596 52.381 0.00 0.00 0.00 5.28
338 348 1.792949 GCATCGCCTTCTGTATAACGG 59.207 52.381 0.00 0.00 0.00 4.44
339 349 1.792949 GGCATCGCCTTCTGTATAACG 59.207 52.381 0.00 0.00 46.69 3.18
390 400 4.609995 CGTTGCCGGGTGTATTCT 57.390 55.556 2.18 0.00 0.00 2.40
405 415 0.321653 GACTGCTTGGATGGTTCCGT 60.322 55.000 0.00 0.00 45.89 4.69
432 442 0.827507 TGGCCTTTTTCTGGTGGAGC 60.828 55.000 3.32 0.00 0.00 4.70
485 496 2.232208 TGATGATCTTGTGAGCGACTGT 59.768 45.455 0.00 0.00 0.00 3.55
498 509 1.478510 GGTGAGACCGTGTGATGATCT 59.521 52.381 0.00 0.00 0.00 2.75
533 545 2.959372 CGGTGTGACTCAGCCGTA 59.041 61.111 11.81 0.00 40.98 4.02
562 578 1.546589 AACACGGCACCGGATTAGGA 61.547 55.000 9.46 0.00 44.69 2.94
567 583 2.358247 GTCAACACGGCACCGGAT 60.358 61.111 9.46 0.00 44.69 4.18
792 850 2.019951 TTGGCGTTTCGAGCGTCTC 61.020 57.895 15.07 6.28 34.76 3.36
806 867 0.983467 ATGGATTTGGTTGGGTTGGC 59.017 50.000 0.00 0.00 0.00 4.52
866 927 0.617413 CAGCACTGGAGGATCAGGTT 59.383 55.000 0.00 0.00 38.98 3.50
945 1007 2.508891 CGAACGCTAGCTTGCTCCG 61.509 63.158 17.91 13.39 0.00 4.63
952 1014 0.790814 GCAAGAAACGAACGCTAGCT 59.209 50.000 13.93 0.00 0.00 3.32
1277 1349 4.408821 TGGGCACGGCATGGAGAC 62.409 66.667 0.00 0.00 0.00 3.36
1451 1523 2.125912 CTCAGCCCAAGACCGACG 60.126 66.667 0.00 0.00 0.00 5.12
1536 1620 2.160822 ATTTCAGATGGATCGGAGCG 57.839 50.000 0.00 0.00 32.80 5.03
1616 1703 6.814076 AGCATAATCGAGACTAAAACGAAG 57.186 37.500 0.00 0.00 39.38 3.79
1649 1736 0.257039 AGAATGACCATGGAGCCCAC 59.743 55.000 21.47 5.17 35.80 4.61
1798 1885 0.316442 CATGTCGCCATTCATCGTGC 60.316 55.000 0.00 0.00 0.00 5.34
1841 1928 1.022982 ACTGATGTCTGCGCATGTGG 61.023 55.000 12.24 0.00 0.00 4.17
1861 1949 3.311596 GGTGGCAATACGAATGTAAGACC 59.688 47.826 0.00 0.00 33.44 3.85
1888 1977 1.202698 GCCCGAGAGTATCAAATGCCT 60.203 52.381 0.00 0.00 37.82 4.75
1940 2037 0.040646 TGGGACGGATGGAGTAGTGT 59.959 55.000 0.00 0.00 0.00 3.55
1942 2039 3.323774 TTATGGGACGGATGGAGTAGT 57.676 47.619 0.00 0.00 0.00 2.73
1943 2040 7.560262 TCTTATATTATGGGACGGATGGAGTAG 59.440 40.741 0.00 0.00 0.00 2.57
1948 2045 5.360591 GCTCTTATATTATGGGACGGATGG 58.639 45.833 0.00 0.00 0.00 3.51
1949 2046 5.043903 CGCTCTTATATTATGGGACGGATG 58.956 45.833 0.00 0.00 0.00 3.51
1951 2048 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
1953 2050 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
1955 2052 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
1956 2053 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
1957 2054 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
1960 2057 9.642327 TGTAGTGTCAAAAACGCTCTTATATTA 57.358 29.630 0.00 0.00 45.69 0.98
1962 2059 8.542497 TTGTAGTGTCAAAAACGCTCTTATAT 57.458 30.769 0.00 0.00 45.69 0.86
1964 2061 6.482308 ACTTGTAGTGTCAAAAACGCTCTTAT 59.518 34.615 0.00 0.00 45.69 1.73
1965 2062 5.813672 ACTTGTAGTGTCAAAAACGCTCTTA 59.186 36.000 0.00 0.00 45.69 2.10
1967 2064 4.034048 CACTTGTAGTGTCAAAAACGCTCT 59.966 41.667 0.00 0.00 45.69 4.09
1968 2065 4.271687 CACTTGTAGTGTCAAAAACGCTC 58.728 43.478 0.00 0.00 45.69 5.03
1993 2090 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
1994 2091 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
1995 2092 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
1996 2093 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
1997 2094 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
1998 2095 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
1999 2096 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
2000 2097 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
2001 2098 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2002 2099 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2003 2100 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2004 2101 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2005 2102 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2006 2103 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
2007 2104 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
2008 2105 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
2009 2106 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
2010 2107 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
2011 2108 0.115745 AAACTACTCCCTCCGTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
2012 2109 1.753649 GTAAACTACTCCCTCCGTCCC 59.246 57.143 0.00 0.00 0.00 4.46
2013 2110 2.450476 TGTAAACTACTCCCTCCGTCC 58.550 52.381 0.00 0.00 0.00 4.79
2014 2111 4.525912 TTTGTAAACTACTCCCTCCGTC 57.474 45.455 0.00 0.00 0.00 4.79
2015 2112 4.635223 GTTTTGTAAACTACTCCCTCCGT 58.365 43.478 0.00 0.00 0.00 4.69
2016 2113 3.676646 CGTTTTGTAAACTACTCCCTCCG 59.323 47.826 0.00 0.00 0.00 4.63
2017 2114 3.434641 GCGTTTTGTAAACTACTCCCTCC 59.565 47.826 0.00 0.00 0.00 4.30
2018 2115 4.151867 CAGCGTTTTGTAAACTACTCCCTC 59.848 45.833 0.00 0.00 0.00 4.30
2019 2116 4.062991 CAGCGTTTTGTAAACTACTCCCT 58.937 43.478 0.00 0.00 0.00 4.20
2020 2117 3.364664 GCAGCGTTTTGTAAACTACTCCC 60.365 47.826 0.00 0.00 0.00 4.30
2021 2118 3.497262 AGCAGCGTTTTGTAAACTACTCC 59.503 43.478 0.00 0.00 0.00 3.85
2022 2119 4.727235 AGCAGCGTTTTGTAAACTACTC 57.273 40.909 0.00 0.00 0.00 2.59
2023 2120 5.051816 TGTAGCAGCGTTTTGTAAACTACT 58.948 37.500 0.00 0.00 32.07 2.57
2024 2121 5.050567 ACTGTAGCAGCGTTTTGTAAACTAC 60.051 40.000 0.00 0.00 34.37 2.73
2038 2135 4.767255 AGCCGCCACTGTAGCAGC 62.767 66.667 0.00 0.00 34.37 5.25
2039 2136 2.510238 GAGCCGCCACTGTAGCAG 60.510 66.667 0.00 0.00 37.52 4.24
2040 2137 4.082523 GGAGCCGCCACTGTAGCA 62.083 66.667 0.00 0.00 36.34 3.49
2041 2138 4.082523 TGGAGCCGCCACTGTAGC 62.083 66.667 0.00 0.00 43.33 3.58
2042 2139 2.185350 CTGGAGCCGCCACTGTAG 59.815 66.667 0.00 0.00 43.33 2.74
2043 2140 3.390521 CCTGGAGCCGCCACTGTA 61.391 66.667 0.00 0.00 43.33 2.74
2045 2142 2.826777 AATTCCTGGAGCCGCCACTG 62.827 60.000 0.00 0.00 43.33 3.66
2046 2143 2.142292 AAATTCCTGGAGCCGCCACT 62.142 55.000 0.00 0.00 43.33 4.00
2047 2144 1.678970 AAATTCCTGGAGCCGCCAC 60.679 57.895 0.00 0.00 43.33 5.01
2048 2145 1.678635 CAAATTCCTGGAGCCGCCA 60.679 57.895 0.00 0.00 46.96 5.69
2049 2146 3.068729 GCAAATTCCTGGAGCCGCC 62.069 63.158 0.00 0.00 37.10 6.13
2050 2147 1.876497 TTGCAAATTCCTGGAGCCGC 61.876 55.000 0.00 0.00 0.00 6.53
2051 2148 0.109132 GTTGCAAATTCCTGGAGCCG 60.109 55.000 0.00 0.00 0.00 5.52
2052 2149 0.247460 GGTTGCAAATTCCTGGAGCC 59.753 55.000 0.00 0.00 31.24 4.70
2053 2150 0.109132 CGGTTGCAAATTCCTGGAGC 60.109 55.000 0.00 0.00 0.00 4.70
2054 2151 0.527565 CCGGTTGCAAATTCCTGGAG 59.472 55.000 0.00 0.00 0.00 3.86
2055 2152 0.897863 CCCGGTTGCAAATTCCTGGA 60.898 55.000 12.96 0.00 0.00 3.86
2056 2153 1.184970 ACCCGGTTGCAAATTCCTGG 61.185 55.000 11.91 11.91 0.00 4.45
2057 2154 1.540267 TACCCGGTTGCAAATTCCTG 58.460 50.000 0.00 0.00 0.00 3.86
2058 2155 2.525105 ATACCCGGTTGCAAATTCCT 57.475 45.000 0.00 0.00 0.00 3.36
2059 2156 2.494073 TGAATACCCGGTTGCAAATTCC 59.506 45.455 13.88 5.82 0.00 3.01
2060 2157 3.859411 TGAATACCCGGTTGCAAATTC 57.141 42.857 0.00 6.52 0.00 2.17
2061 2158 5.362430 ACATATGAATACCCGGTTGCAAATT 59.638 36.000 10.38 0.00 0.00 1.82
2062 2159 4.892934 ACATATGAATACCCGGTTGCAAAT 59.107 37.500 10.38 0.00 0.00 2.32
2063 2160 4.274147 ACATATGAATACCCGGTTGCAAA 58.726 39.130 10.38 0.00 0.00 3.68
2064 2161 3.892284 ACATATGAATACCCGGTTGCAA 58.108 40.909 10.38 0.00 0.00 4.08
2065 2162 3.569194 ACATATGAATACCCGGTTGCA 57.431 42.857 10.38 0.00 0.00 4.08
2066 2163 5.703592 TGAATACATATGAATACCCGGTTGC 59.296 40.000 10.38 0.00 0.00 4.17
2067 2164 7.921786 ATGAATACATATGAATACCCGGTTG 57.078 36.000 10.38 0.00 34.71 3.77
2068 2165 8.934023 AAATGAATACATATGAATACCCGGTT 57.066 30.769 10.38 0.00 35.50 4.44
2069 2166 8.792633 CAAAATGAATACATATGAATACCCGGT 58.207 33.333 10.38 0.00 35.50 5.28
2070 2167 8.792633 ACAAAATGAATACATATGAATACCCGG 58.207 33.333 10.38 0.00 35.50 5.73
2071 2168 9.825972 GACAAAATGAATACATATGAATACCCG 57.174 33.333 10.38 0.00 35.50 5.28
2126 2223 9.868277 AAACAGTGTTGATTTTGATAAAAGTGA 57.132 25.926 9.79 0.00 33.22 3.41
2140 2237 9.044150 CCATGATTTTTACAAAACAGTGTTGAT 57.956 29.630 9.79 0.00 29.06 2.57
2141 2238 7.493971 CCCATGATTTTTACAAAACAGTGTTGA 59.506 33.333 9.79 0.00 29.06 3.18
2142 2239 7.279758 ACCCATGATTTTTACAAAACAGTGTTG 59.720 33.333 9.79 1.46 29.06 3.33
2143 2240 7.334858 ACCCATGATTTTTACAAAACAGTGTT 58.665 30.769 1.64 1.64 29.06 3.32
2144 2241 6.883744 ACCCATGATTTTTACAAAACAGTGT 58.116 32.000 0.00 0.00 29.06 3.55
2145 2242 9.487790 AATACCCATGATTTTTACAAAACAGTG 57.512 29.630 0.00 0.00 29.06 3.66
2146 2243 9.705290 GAATACCCATGATTTTTACAAAACAGT 57.295 29.630 0.00 0.00 29.06 3.55
2147 2244 9.703892 TGAATACCCATGATTTTTACAAAACAG 57.296 29.630 0.00 0.00 29.06 3.16
2148 2245 9.482627 GTGAATACCCATGATTTTTACAAAACA 57.517 29.630 0.00 0.00 0.00 2.83
2149 2246 9.482627 TGTGAATACCCATGATTTTTACAAAAC 57.517 29.630 0.00 0.00 0.00 2.43
2151 2248 9.650539 CATGTGAATACCCATGATTTTTACAAA 57.349 29.630 0.00 0.00 40.70 2.83
2152 2249 9.029368 TCATGTGAATACCCATGATTTTTACAA 57.971 29.630 0.00 0.00 41.77 2.41
2153 2250 8.586879 TCATGTGAATACCCATGATTTTTACA 57.413 30.769 0.00 0.00 41.77 2.41
2154 2251 9.520204 CTTCATGTGAATACCCATGATTTTTAC 57.480 33.333 0.00 0.00 44.93 2.01
2155 2252 9.473007 TCTTCATGTGAATACCCATGATTTTTA 57.527 29.630 0.00 0.00 44.93 1.52
2156 2253 8.253113 GTCTTCATGTGAATACCCATGATTTTT 58.747 33.333 0.00 0.00 44.93 1.94
2157 2254 7.147846 GGTCTTCATGTGAATACCCATGATTTT 60.148 37.037 15.62 0.00 44.93 1.82
2158 2255 6.322201 GGTCTTCATGTGAATACCCATGATTT 59.678 38.462 15.62 0.00 44.93 2.17
2159 2256 5.829924 GGTCTTCATGTGAATACCCATGATT 59.170 40.000 15.62 0.00 44.93 2.57
2160 2257 5.380043 GGTCTTCATGTGAATACCCATGAT 58.620 41.667 15.62 0.00 44.93 2.45
2161 2258 4.780815 GGTCTTCATGTGAATACCCATGA 58.219 43.478 15.62 1.95 42.26 3.07
2166 2263 4.843728 TCTTGGGTCTTCATGTGAATACC 58.156 43.478 17.36 17.36 45.31 2.73
2167 2264 7.012421 GGTATTCTTGGGTCTTCATGTGAATAC 59.988 40.741 0.00 0.00 41.52 1.89
2168 2265 7.054124 GGTATTCTTGGGTCTTCATGTGAATA 58.946 38.462 0.00 0.00 33.01 1.75
2169 2266 5.888161 GGTATTCTTGGGTCTTCATGTGAAT 59.112 40.000 0.00 0.00 33.01 2.57
2170 2267 5.253330 GGTATTCTTGGGTCTTCATGTGAA 58.747 41.667 0.00 0.00 0.00 3.18
2171 2268 4.324254 GGGTATTCTTGGGTCTTCATGTGA 60.324 45.833 0.00 0.00 0.00 3.58
2172 2269 3.947834 GGGTATTCTTGGGTCTTCATGTG 59.052 47.826 0.00 0.00 0.00 3.21
2173 2270 3.053619 GGGGTATTCTTGGGTCTTCATGT 60.054 47.826 0.00 0.00 0.00 3.21
2174 2271 3.203040 AGGGGTATTCTTGGGTCTTCATG 59.797 47.826 0.00 0.00 0.00 3.07
2175 2272 3.474920 AGGGGTATTCTTGGGTCTTCAT 58.525 45.455 0.00 0.00 0.00 2.57
2176 2273 2.929301 AGGGGTATTCTTGGGTCTTCA 58.071 47.619 0.00 0.00 0.00 3.02
2177 2274 3.181453 GCTAGGGGTATTCTTGGGTCTTC 60.181 52.174 0.00 0.00 0.00 2.87
2178 2275 2.778270 GCTAGGGGTATTCTTGGGTCTT 59.222 50.000 0.00 0.00 0.00 3.01
2179 2276 2.409570 GCTAGGGGTATTCTTGGGTCT 58.590 52.381 0.00 0.00 0.00 3.85
2180 2277 1.070289 CGCTAGGGGTATTCTTGGGTC 59.930 57.143 0.00 0.00 0.00 4.46
2181 2278 1.129058 CGCTAGGGGTATTCTTGGGT 58.871 55.000 0.00 0.00 0.00 4.51
2182 2279 0.250338 GCGCTAGGGGTATTCTTGGG 60.250 60.000 9.09 0.00 0.00 4.12
2183 2280 0.250338 GGCGCTAGGGGTATTCTTGG 60.250 60.000 7.64 0.00 0.00 3.61
2184 2281 0.600255 CGGCGCTAGGGGTATTCTTG 60.600 60.000 7.64 0.00 0.00 3.02
2185 2282 1.746517 CGGCGCTAGGGGTATTCTT 59.253 57.895 7.64 0.00 0.00 2.52
2186 2283 2.868986 GCGGCGCTAGGGGTATTCT 61.869 63.158 26.86 0.00 0.00 2.40
2187 2284 2.357154 GCGGCGCTAGGGGTATTC 60.357 66.667 26.86 0.00 0.00 1.75
2188 2285 3.937447 GGCGGCGCTAGGGGTATT 61.937 66.667 32.30 0.00 0.00 1.89
2206 2303 3.899981 TTGGTGGTAGCAGCGCAGG 62.900 63.158 18.30 1.51 0.00 4.85
2207 2304 1.915614 CTTTGGTGGTAGCAGCGCAG 61.916 60.000 18.30 12.61 0.00 5.18
2208 2305 1.965930 CTTTGGTGGTAGCAGCGCA 60.966 57.895 18.30 5.74 0.00 6.09
2209 2306 1.515521 AACTTTGGTGGTAGCAGCGC 61.516 55.000 18.30 0.00 0.00 5.92
2319 2418 8.136800 TGTTTGGTATGATGCAATTATAAGCAG 58.863 33.333 5.72 0.00 44.94 4.24
2320 2419 8.005192 TGTTTGGTATGATGCAATTATAAGCA 57.995 30.769 2.25 2.25 45.92 3.91
2321 2420 8.755018 GTTGTTTGGTATGATGCAATTATAAGC 58.245 33.333 0.00 0.00 0.00 3.09
2351 2450 1.499949 GCGTTGGCGTTATGCTTGA 59.500 52.632 0.00 0.00 45.43 3.02
2352 2451 1.514014 GGCGTTGGCGTTATGCTTG 60.514 57.895 0.00 0.00 45.43 4.01
2353 2452 1.519751 TTGGCGTTGGCGTTATGCTT 61.520 50.000 0.00 0.00 45.43 3.91
2354 2453 1.969064 TTGGCGTTGGCGTTATGCT 60.969 52.632 0.00 0.00 45.43 3.79
2355 2454 1.799916 GTTGGCGTTGGCGTTATGC 60.800 57.895 0.00 0.00 45.38 3.14
2356 2455 0.039978 TTGTTGGCGTTGGCGTTATG 60.040 50.000 0.00 0.00 41.24 1.90
2357 2456 0.885196 ATTGTTGGCGTTGGCGTTAT 59.115 45.000 0.00 0.00 41.24 1.89
2358 2457 0.039978 CATTGTTGGCGTTGGCGTTA 60.040 50.000 0.00 0.00 41.24 3.18
2359 2458 1.299773 CATTGTTGGCGTTGGCGTT 60.300 52.632 0.00 0.00 41.24 4.84
2360 2459 1.167155 TACATTGTTGGCGTTGGCGT 61.167 50.000 0.00 0.00 41.24 5.68
2361 2460 0.170116 ATACATTGTTGGCGTTGGCG 59.830 50.000 0.00 0.00 41.24 5.69
2362 2461 2.094752 AGAATACATTGTTGGCGTTGGC 60.095 45.455 0.00 0.00 38.90 4.52
2363 2462 3.848272 AGAATACATTGTTGGCGTTGG 57.152 42.857 0.00 0.00 0.00 3.77
2364 2463 5.121611 TCAGTAGAATACATTGTTGGCGTTG 59.878 40.000 0.00 0.00 46.26 4.10
2365 2464 5.242434 TCAGTAGAATACATTGTTGGCGTT 58.758 37.500 0.00 0.00 46.26 4.84
2366 2465 4.827692 TCAGTAGAATACATTGTTGGCGT 58.172 39.130 0.00 0.00 46.26 5.68
2377 2476 8.396390 TGAACGTATCTGAACTCAGTAGAATAC 58.604 37.037 6.61 6.46 44.12 1.89
2400 2499 4.770010 GTGGTGGTATTCCCTTTCAATGAA 59.230 41.667 0.00 0.00 0.00 2.57
2411 2510 2.112815 GCCGCTGTGGTGGTATTCC 61.113 63.158 9.31 0.00 44.44 3.01
2416 2515 1.553690 ATCTAAGCCGCTGTGGTGGT 61.554 55.000 9.31 0.00 44.44 4.16
2425 2524 6.080406 GTCTAATTAATGCAATCTAAGCCGC 58.920 40.000 0.00 0.00 0.00 6.53
2442 2541 6.115448 ACTGTGGAGTTAAGCTGTCTAATT 57.885 37.500 0.00 0.00 0.00 1.40
2443 2542 5.746990 ACTGTGGAGTTAAGCTGTCTAAT 57.253 39.130 0.00 0.00 0.00 1.73
2444 2543 5.546621 AACTGTGGAGTTAAGCTGTCTAA 57.453 39.130 0.00 0.00 40.85 2.10
2445 2544 5.546621 AAACTGTGGAGTTAAGCTGTCTA 57.453 39.130 0.00 0.00 41.87 2.59
2446 2545 4.423625 AAACTGTGGAGTTAAGCTGTCT 57.576 40.909 0.00 0.00 41.87 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.