>input_sequence_79309
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-------------------------------ATGAGCCCGGGGAGCGGCAAGCTGCGGTGGCTGTGGAGGGCGCCGGCGC
GGGCGTTCGGGCGCGCGCGGGACTTCTACGTGCGGAGCATCACGGGGTGCGCGCGCTACGTCCCCGCCGACGCGGCCTTC
GGCGCCTACCCGGTGCTCGTGCCCGCGCCGCTGCCAAGGAGCCAGAGCTGCGGCTCTGGCGCCGACTATGGCGGCGAGGA
GGACCTCCGGGAGCTCATCCGCGCGGCCTCGCAGAGGCGCGACGGCGAGCAGCAGCGGCAGGCCGACCGTCTCCATGCCG
TGCCCAGGAGCCAGAGCGTGGCGGGGGCGGCGTCCATGGCGCCGATCGACGAGGACGCGCCGTGCGAGTTCGCCGCCGGC
GCGGGCGCCACGCTCTACTCCCGCAGCCAGAGCTACGCCGGCGGCGCCATGGGGGCCAGGAAGTCTCACTGCCACAGCAA
GGCGTCGGTCTTGGGCTGA-------------------------------------------------------------
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>chr5D_1_TraesCS5D01G415000
TGCTTTTTTAGGGGTCCTTCAATTTGAAAGGAAGTTTCTTCCCCACAAAAACAAAATGACACTGTAAGCAGGTGAAATGT
ACTCCAAGCAATGTACGAGTC-----CATCTAAAATAGGACGAGCACGAATCATGACTGGGGCTGCG----TTACCGTCC
GTCGTTATCTTTTTCATTATAGTTTGTCTAATTCACATCTAGATATTTTTTAAGAATATCACATCTAAGCTCCCACAAAT
ACATAATACCGCAATAAAAAATGAAAAAAATTAGGACAAAAAAATAAACCACAAACAAAGTGAACATCAGTTTAGATGTG
ACATAACTATGTCACATATCACAGACCCCGTTATACAGAAGGCGATGCCACAATGGCCACCAGACGCCAAACAGTCACGA
GAATACACCCGGCAACGGAACCATCCAAGCAGTCACGTCAAGCTCCACCAGAAAAAGGCCAGCGTTTCTTTT-CCATTCT
CAAATCCGGAAAGGCACAGTCGCTCACAAGATCA-TCACACGGTCTCACCGGTGCACCAGACCTTAC----GGCTGAGTC
ACACCGCCAACTCACGCTCCTAATCCGGTGCCGTGTTGACCCGCTCCGTCTAGAAGACCGGAGCAAAACAACGTGCACCA
ACGCGAAACGCCGAGTCGGCAACGTCGCCGCC------------------------GTGGTGACCGCGCGCAGTTTCGCC
CACTCCGCACTGGCGCGGAGGTCGTCCCCGTCACCTACCATCCATCCATACCCGCGC-----------GCCATGGGCCCC
GGCTC-------CCACCGGTACAAGAAGGCGGCCACCCCACCACCACCAG---AGACGCTCGAAACGCCAACCCAACCAA
ATCCATCATCGCCATCATCCCCACCTTATTAAACCAAAAACCCGCGAACCTGATCCTCCAGTGCTGTCCGCCATCACAGC
GTCCGTGATAGTGTTGTGATCCGCTGATCATTCGC-TGTTAGCTCGCGGAGCAAGC-TAGCGTTCGTTTCTTGCAGGGAG
AGTG---------ATCGGTCGGGCGGGTGGCATGAGCCCGGGGAGCGGCAAGCTGCGGTGGCTGTGGAGGGCGCCGGCGC
GGGCGTTCGGGCGCGCGCGGGACTTCTACGTGCGGAGCATCACGGGGTGCGCGCGCTACGTCCCCGCCGACGCGGCCTTC
GGCGCCTACCCGGTGCTCGTGCCCGCGCCGCTGCCAAGGAGCCAGAGCTGCGGCTCTGGCGCCGACTATGGCGGCGAGGA
GGACCTCCGGGAGCTCATCCGCGCGGCCTCGCAGAGGCGCGACGGCGAGCAGCAGCGGCAGGCCGACCGTCTCCATGCCG
TGCCCAGGAGCCAGAGCGTGGCGGGGGCGGCGTCCATGGCGCCGATCGACGAGGACGCGCCGTGCGAGTTCGCCGCCGGC
GCGGGCGCCACGCTCTACTCCCGCAGCCAGAGCTACGCCGGCGGCGCCATGGGGGCCAGGAAGTCTCACTGCCACAGCAA
GGCGTCGGTCTTGGGCTGAGCTAGCT-----GCCGGCTGCTCCTGGACTGCTCGTGTGTGATCAGGT-------CATGCT
TGCCAAAAATTGTTCATGCCGCTCCGATCCATCTGAAATTGGGATTTTGAGCTTGTAAAT---ACGATACAGGGAGGAAT
TCATGCATGTGTAATTTGCTTGCTTCGTTTTAGTCTCGATTATGCTTCAAAAATCGTGGGCTCCATGGTCATTCTCTTGT
CTCTTGCTTGCATTGAAATGCCGGAATGATCATACAGTATAGATATTTGCAACTTGCCACCTACCGCTGGGTCACCGGTC
ACACAAGAGATTGAAAGCGCGGGCGGTGCCGTTCTGTAGCGGGCGCACGATGAATGGCGACATGATTTTTCCAGTACGTG
GACCATGCCACATGC-GCAGACATCAGTGGTCTT-ACATTCGTATTGCCACCCCGAAGGCATTTGATACTCTCGGGCT--
------CGGGACTATATTGATATTCCAGTCGAGTTTACACTACTCCATCCGTCCCATAATATAAGAGCGTTTTTGACACT
ACAAGTGTAAAAAACGCTCTTATATTATGGGACGGAGGGAGTAGTTTACAAAACGCTGCTACAGTGGCGGCTCCAGGAAT
TTGCAACCGGGTATTCATATGTATTCATTTTGTCAAAATCATTGTTGTTTTTTTGAAAATTATCACTTTTATCAAAATCA
ACACTGTTTTGTAAAAATCATGGGTATTCACATGAAGACCCAAGAATACCCCTAGCGCCGCCCCTGCGCTGCTACCACCA
AAGTTCGCAAGTCATCTTTTTT-AGCTTAGATCAAGTCCATA-ATAAGTCTATGAACGTGTCAAACTTGTCAATTTTTCT
CGTCTTTGACTCCGTACCTGCTTATAATTGCATCATACCAAACAACATCTCAAGCATAACGCCAACGCCAACAATGTATT
CTACTGAGTTCAGATACGTTCATTGAAAGGGAATACCACCACAGCGGCTTAGATTGCATTAATTAGACAGCTTAACTCCA
CAGTTT
>chr5A_23
----------------------TTTGGAAGGAAGTTTCTTCCCCACAAAAACAAAAAGATACTGTAAGCAGGTGAAACGT
ACTCAAAGTTATGTATAGTACGAATTCATGTAAAATAGTAGGAGCACGAATCATGATTGGCGCTGCCTCCATTACCGTCC
GTCGTTATCTTTTTGGCATTCCGCGAGCACCGAC----------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------GGCGATGCCACGATGGCCACCAAACGCCAAACAGTCACGC
GAATGCGCTCGGCAGCGGAACCATCCAAGCAGTCACGTCAAACTCCACCAGAAAAAGGCCAGCGTTTCTTTTTCCCTTCT
CAAATCCGGAAAGGCGCAGTCGCTCACAGGATCA-TCACACCGTCTCACCGGTGCACCAGACCTCGTGGCTGTCTGAGTC
ACACCGCCAACTCACGCCCCTA-TCCGGTGATGT-------------GTCTAGAAGACCGGAGCAAACCAACGTGCACCT
ACGCGGGACGCCGTCTCGGCCACGTCGCCGCCGGAAGGAATACAGGGGATGCCACTGTGGTGACCGCGCGCAGTTTCGCC
CACTCCGCACTGCCGCGGAGGTCGTCCCCGTCACCTACCATCCAC----ACCCACGC-----------GCCAC-GGGCCC
GGCTC-------CCACCGGTACAAGAAGGCGGCCACCCCACCACCACCAC---AGACGCTCGAAACCCCAACCCAACCAA
ATCCATCATCGCCATCATCCCCACCTTATTAAACCAAAG-CCCGCGCACCTGATCCTCCAGTGCTGTCCGCCATCACAGC
GTCCGTGATAGTGCTGTGATCCGCTGATCCTTCGCCTGGTAGCTCGGGGAGCAGGCGTAGCGTTCGTTTCTTGCAGGGAG
AGTGGGTCGAGTGATCGGGCGGGCGGGTGGCATGAGCCCGGGGAGCGGCAAGCTGCGGTGGCTGTGGAGGGCGCCGGCGC
GGGCGTTCGGCCGCGCGCGGGACTTCTACGTGCGGAGCATCACGGGGTGCGCGCGCTACGTCCCCGCCGACGCGGCCTTC
GGCGCCTACCCGGTGCTCGTGCCCGCGCCGCTGCCCAGGAGCCAGAGCTGCGGCTCCGGCGCCGACTACGGCGGCGAGGA
GGACCTCCGGGAGCTCATCCGCGCGGCCTCGCAGAGGCGCGATGTCGAGCAGCGGCGGCAGGCCGACCATCTCCATGCCG
TGCCCAGGAGCCAGGGCGTGGCGGGGGCGGCGTCCATGGCGCCGATCGACGAGGACGCGCCGTGCGAGTTCGCCGCTGGT
GCGGGCGCCACGCTCTACTCCCGCAGTCAGAGCTACGCCGGCGGGGCCATGGGGGCCAGGAAGTCTCACTGCCACAGCAA
GGTGTCGGCCTTGGGCTGAGCTAGCC-----GCCGGCTGCTCCTCAACTGCTCGTGTGTGATCAGGTTTCAGGTCATGCT
TGCCAAAAATTGTTCATGTTGCTCCGATCCATCTGAAATTGGGATTTTCAGCTTGTAAATAT---GATACAGGGAGGAAT
TCATGCATGCGTAATTTGGTTGTTTCCTTGTAGGCTCGATTATGCTTCAAAAATCATGGGCTCCATGGTCATTCTCTAGT
ACCTTGCTTGCAATGAAATGCCGGAATGATCATACAGTGTAGATATTTGCAACTCGCCACCCACCGCTGGGTCACCGGTC
GCCCAAGAGATTGAAAGCGCGGGCGGTGCCGTTCCGTAGCGGGCACACGATGAATGGCGACATGATTTT-CCAGTACATG
GACCATGTCACATGCGGCAGACATCACTTGTCTTGACATTCGTATTGCCA---------CATTTGATACTCTCGGGT---
-----------CTATATTGATATTCCAGTCGAGTTTGCGTTAGTTTAC--------------------------------
---------------------------------------------------AA---------------------------
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------------------------------------------------------------------CGCTGCTACCGCCA
AAGTTCACAAGTCAT-TTTTTTTAGCTTAGATCAGGTTCATAAATAGGTCTATGAACGTGTCAAACTTGTCAATTTTTCT
CGTCTTTGACTCCGTAC---CTTATAATTGCATCATAGCAAACAACATC----------------CGCCAACAATCTATT
CTACTGAGTTCAGATACGCTCATTGAAAGAGAATGCCACCACAACGGCTTAGATTGCATTG----GACAACTTAACTCCA
CAGTTT
>chr5B_346
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----------------------------ACCGAC----------------------------------------------
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----------------------------------------GGCGATGCCACGATGGCCACCAGACGCCAAACAGTCACGC
GAATGCACCCGGCAGCGGAACCATCCAAGCAGTCACGTCAAACTCCACCAGAAAAAGGCCAGCGTTTCTTTT-CCATTCT
CAAATCCGGAAAGGCGCAGTCGCTCACAGGATCAATCACACGCTCTTACCGGTGCACCAGACCTCATGGCTGGCTGAGTC
ACACCGCCAACTCACGCCCCTA-TCCGGTGCTGTGTTGACCCGCTCCGTCTAGAAGACCGGAACAAAACAACGTGCACCA
ACGCGAGACGCCGAGTCGGCAACGTCGCCGCC------------------------GTGGTGACCGCGCGCAGTTTCGCC
CACTCCGCACTGGCGCGGAGGTCGTCCCCGTCACCTACCATCCAC----ACCCGCGCCCCCCCCCCCGGCCCC-GGCCCC
GGCTCCCACCGGCCACCGGTACAAGAAGGCGGCCACCCCACCACCACCACCAAAGACGCTCGAAACTCCAACCCAACCTA
ATCCATCATCACCATCATCCTCACCTTATTAAACCAAAAACCCGCGCACCTGATCCTCCAGTGCTGTTCGCCATCACAGC
GTCCGTGATAGAGAGTG-------TGATCCTGCGCCTGGTAGCCCGGGGAGCAGGCGCAGCGTTCG-TTCTTGCAGGGAG
AGTGGGTCGAGCGATCGGTCGGGAGGGTGGCATGAGCCCGGGGAGCGGGAAGCTGCGGTGGCTGTGGAGGGCGCCGGCGC
GGGCGTTCGGCCGCGCGCGGGACTTCTACGTGCGGAGCATCACGGGGTGCGCGCGCTACGTCCCGGCCGACGCGGCCTTC
GGCGCCTATCCGGTGCTCGTGCCCGCGCCGCTGTCCAGGAGCCAGAGCTGCGGCTCCGGCGCCGACTATGGCGGCGAGGA
GGACCTCCGGGAGCTCATCCGAGCGGCCTCGCAGAGGCGCGAAGGCGAGCAGCAGCGGCAGGCCGTCCATCTCCATGCCG
TGCCCAGGAGCCAGAGCGTGGCGGGGGCGGCGTCCATGGCGCCGATCGACGAGGACGCGCCGTGCGAGTTCGCCGGCGGC
GCGGGCGCCACGCTCTACTCCCGCAGCCAGAGCTACGCCGGCGGGGCCATGGGGCCCAGGAAGTCTCACTGCCACACTAA
GATGTCGGCCTTGGGCTGAGCTAGCTGCCGTGCCGGCTGCTCCTGGACTGCTCGTGTGTGATCAGGT-------CATGCT
TGCCAAAATTTGTTCATGCTGCTCCGATCCATCTAAAATTGGGATCTTGAGCTTGTAAATAGCACGATACAGGGAGGAAT
TCATGCATGTGTAATTTGCTTGTTTCGTTTTACTCTCGGTTATGCTTCAAAAATCATGGGCTCCATGGTCATTCTCTTGT
CTCTTGCTTGCATTGAAATGCCGGAATGATCATACAGTATAGATATTTGCAACTTGCCACCCACCGCCGGGTCACCGGTC
ACACGAGAGATTGAAAGCGCGGGCGATGCCGTTCTTGAGCGGGCACACGATGAATGGC----------------------
----ATGTCACAAGC-GCAGACATCAGTTGTCTTGACATTCCTGTTGCCACCCCGAGGGCATTTGATACTCTCGGGCTCG
GGACGACGGGACTATATTGATATTCCAGTCGAGTTTTTTTTTCCGAAACGGAATTCCAGTCGAGTTTACAC---------
-----------------------------------------TAGTTTACAAAA---------------------------
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------------------------------------------------------------------CGCTGCTACCACCA
AAGTTCGCAAGTCAT-TTTTTT-AGCCTAGATCAAGTCCATC-ATAAGTCTATGAACGTGTCAAACTAGTCAATTTTT-T
CGTCTTTGACTCCGTAC---CTTATAATTGCATCATAC------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSS----S-----------------------------S--S-----------------S--
----S---SS-----SSSSS---------S--------S-S---------------S---S-----S-------------
--------------SSSSS-SSSSSSS-SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S---------------------------S
----S---------S--------------------------S--------------------------------------
---------------S------------S-----------------------------------S-S-------------
-----------------S----S--------S------------------------------------------------
------S-------------------------------------------------------------------------
--------------------------------------------SSSSS-----------------------SS------
-------------------------------------------------S----------------S-------------
----------------------------------------------S---------------------------------
-------------S---------------S--------S-------S------S--------------------------
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----------S---------------------------------------------------------------------
-----------------------------------S--------------------S-----------------------
------------------------------------------S-------------------------S-----------
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--------------------------------------------S-----------------------------------
--S-----S-----------------------------------------------------------------------
-------------------S------------------------------------------------------------
----------------------S--------------------------------S------------------------
-------------------------------------------------------------S------------------
--------------------------------------------S------------------------S-------S--
-------S--------------------S---------------------------S-----------------------
------------------------------------S-SS----SS-S-S-SSSSSS-S-SS-SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------
---------------S----------------------------------------------------------------
-----------------SSS-----------------------------SSSSSSSSSSSSSSSS----------S----
------------------S----------S----S--------S----------------SSSSS----S----------
------
>forward_999
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-------------------ATCCGCTGATCATTCGCTGT-----------------------------------------
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>reverse_2455
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------------------------------------------------------CATAACGCCAACGCCAACAA------
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