Multiple sequence alignment - TraesCS5D01G405300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G405300 chr5D 100.000 2768 0 0 1 2768 470376073 470378840 0.000000e+00 5112.0
1 TraesCS5D01G405300 chr5D 87.423 485 42 10 3 477 491944009 491944484 8.720000e-150 540.0
2 TraesCS5D01G405300 chr5D 84.137 498 61 13 3 491 450043616 450044104 1.500000e-127 466.0
3 TraesCS5D01G405300 chr5D 84.848 66 5 5 413 476 422935823 422935761 8.280000e-06 62.1
4 TraesCS5D01G405300 chr5A 91.959 2052 81 38 700 2690 591081550 591083578 0.000000e+00 2798.0
5 TraesCS5D01G405300 chr5A 96.644 149 3 1 565 713 590999834 590999980 2.130000e-61 246.0
6 TraesCS5D01G405300 chr5A 91.228 57 5 0 500 556 590999501 590999557 8.220000e-11 78.7
7 TraesCS5D01G405300 chr5B 90.823 1689 75 43 658 2305 577659405 577661054 0.000000e+00 2187.0
8 TraesCS5D01G405300 chr5B 82.301 113 11 7 389 499 353938716 353938611 3.800000e-14 89.8
9 TraesCS5D01G405300 chr6D 91.892 296 17 4 190 481 385563571 385563279 9.230000e-110 407.0
10 TraesCS5D01G405300 chr2D 76.256 577 95 30 1001 1541 118245369 118245939 4.540000e-68 268.0
11 TraesCS5D01G405300 chr2B 80.758 343 49 9 1212 1541 169864592 169864930 4.580000e-63 252.0
12 TraesCS5D01G405300 chr2B 86.508 126 15 2 1385 1510 5490800 5490923 1.340000e-28 137.0
13 TraesCS5D01G405300 chr2A 75.904 581 90 31 1001 1541 120098727 120099297 4.580000e-63 252.0
14 TraesCS5D01G405300 chr2A 89.815 108 10 1 2504 2610 738348309 738348416 1.340000e-28 137.0
15 TraesCS5D01G405300 chr2A 80.272 147 17 7 333 476 440914644 440914507 1.750000e-17 100.0
16 TraesCS5D01G405300 chr3B 82.967 182 23 7 310 488 783113584 783113408 1.030000e-34 158.0
17 TraesCS5D01G405300 chrUn 82.682 179 21 8 311 484 103948362 103948189 1.720000e-32 150.0
18 TraesCS5D01G405300 chr1A 78.723 188 34 6 3 187 350197832 350198016 1.350000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G405300 chr5D 470376073 470378840 2767 False 5112 5112 100.000 1 2768 1 chr5D.!!$F2 2767
1 TraesCS5D01G405300 chr5A 591081550 591083578 2028 False 2798 2798 91.959 700 2690 1 chr5A.!!$F1 1990
2 TraesCS5D01G405300 chr5B 577659405 577661054 1649 False 2187 2187 90.823 658 2305 1 chr5B.!!$F1 1647
3 TraesCS5D01G405300 chr2D 118245369 118245939 570 False 268 268 76.256 1001 1541 1 chr2D.!!$F1 540
4 TraesCS5D01G405300 chr2A 120098727 120099297 570 False 252 252 75.904 1001 1541 1 chr2A.!!$F1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
608 609 0.241749 ACGCCATGTTACGTCGAGAA 59.758 50.0 0.0 0.0 38.28 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2086 2190 0.171455 CCTCCACAGTACACTCGAGC 59.829 60.0 13.61 0.0 0.0 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.203394 AACACCAGTGGCAGGCAG 60.203 61.111 9.78 0.00 34.19 4.85
18 19 3.797507 AACACCAGTGGCAGGCAGG 62.798 63.158 9.78 0.00 34.19 4.85
45 46 4.040198 GGGAGGGAGGGGAGGGTT 62.040 72.222 0.00 0.00 0.00 4.11
46 47 2.692741 GGAGGGAGGGGAGGGTTG 60.693 72.222 0.00 0.00 0.00 3.77
47 48 3.412408 GAGGGAGGGGAGGGTTGC 61.412 72.222 0.00 0.00 0.00 4.17
50 51 4.410400 GGAGGGGAGGGTTGCGTG 62.410 72.222 0.00 0.00 0.00 5.34
51 52 4.410400 GAGGGGAGGGTTGCGTGG 62.410 72.222 0.00 0.00 0.00 4.94
52 53 4.974438 AGGGGAGGGTTGCGTGGA 62.974 66.667 0.00 0.00 0.00 4.02
53 54 3.728373 GGGGAGGGTTGCGTGGAT 61.728 66.667 0.00 0.00 0.00 3.41
54 55 2.438434 GGGAGGGTTGCGTGGATG 60.438 66.667 0.00 0.00 0.00 3.51
55 56 2.438434 GGAGGGTTGCGTGGATGG 60.438 66.667 0.00 0.00 0.00 3.51
56 57 2.438434 GAGGGTTGCGTGGATGGG 60.438 66.667 0.00 0.00 0.00 4.00
57 58 4.740822 AGGGTTGCGTGGATGGGC 62.741 66.667 0.00 0.00 0.00 5.36
76 77 4.569180 CCCATGGCCGCTACCAGG 62.569 72.222 6.09 0.40 44.71 4.45
86 87 4.838152 CTACCAGGCACGCCGCAT 62.838 66.667 1.61 0.00 45.17 4.73
87 88 4.830765 TACCAGGCACGCCGCATC 62.831 66.667 1.61 0.00 45.17 3.91
110 111 2.997315 CCGGACTGGCAGGAGTGA 60.997 66.667 20.34 0.00 33.08 3.41
111 112 2.362369 CCGGACTGGCAGGAGTGAT 61.362 63.158 20.34 0.00 33.08 3.06
112 113 1.153489 CGGACTGGCAGGAGTGATG 60.153 63.158 20.34 0.00 0.00 3.07
113 114 1.222936 GGACTGGCAGGAGTGATGG 59.777 63.158 20.34 0.00 0.00 3.51
114 115 1.451028 GACTGGCAGGAGTGATGGC 60.451 63.158 20.34 0.00 43.16 4.40
116 117 2.672908 TGGCAGGAGTGATGGCAG 59.327 61.111 0.00 0.00 46.94 4.85
117 118 2.827642 GGCAGGAGTGATGGCAGC 60.828 66.667 0.00 0.00 42.45 5.25
118 119 2.827642 GCAGGAGTGATGGCAGCC 60.828 66.667 3.66 3.66 0.00 4.85
119 120 2.513204 CAGGAGTGATGGCAGCCG 60.513 66.667 7.03 0.00 0.00 5.52
120 121 4.479993 AGGAGTGATGGCAGCCGC 62.480 66.667 7.03 1.55 37.44 6.53
121 122 4.479993 GGAGTGATGGCAGCCGCT 62.480 66.667 7.03 2.57 38.60 5.52
122 123 3.200593 GAGTGATGGCAGCCGCTG 61.201 66.667 16.47 16.47 38.60 5.18
123 124 4.790962 AGTGATGGCAGCCGCTGG 62.791 66.667 21.77 4.12 38.60 4.85
147 148 2.943653 GGCACCCGAAACGAACAG 59.056 61.111 0.00 0.00 0.00 3.16
148 149 2.613506 GGCACCCGAAACGAACAGG 61.614 63.158 0.00 0.00 0.00 4.00
150 151 1.070105 CACCCGAAACGAACAGGGA 59.930 57.895 15.34 0.00 46.64 4.20
151 152 0.533308 CACCCGAAACGAACAGGGAA 60.533 55.000 15.34 0.00 46.64 3.97
152 153 0.399075 ACCCGAAACGAACAGGGAAT 59.601 50.000 15.34 0.00 46.64 3.01
153 154 0.802494 CCCGAAACGAACAGGGAATG 59.198 55.000 5.14 0.00 46.64 2.67
154 155 1.609580 CCCGAAACGAACAGGGAATGA 60.610 52.381 5.14 0.00 46.64 2.57
155 156 1.463444 CCGAAACGAACAGGGAATGAC 59.537 52.381 0.00 0.00 0.00 3.06
156 157 1.463444 CGAAACGAACAGGGAATGACC 59.537 52.381 0.00 0.00 38.08 4.02
157 158 2.500229 GAAACGAACAGGGAATGACCA 58.500 47.619 0.00 0.00 41.20 4.02
158 159 1.892209 AACGAACAGGGAATGACCAC 58.108 50.000 0.00 0.00 41.20 4.16
159 160 0.762418 ACGAACAGGGAATGACCACA 59.238 50.000 0.00 0.00 41.20 4.17
160 161 1.270839 ACGAACAGGGAATGACCACAG 60.271 52.381 0.00 0.00 41.20 3.66
161 162 1.826385 GAACAGGGAATGACCACAGG 58.174 55.000 0.00 0.00 41.20 4.00
162 163 0.405585 AACAGGGAATGACCACAGGG 59.594 55.000 0.00 0.00 41.20 4.45
163 164 1.379044 CAGGGAATGACCACAGGGC 60.379 63.158 0.00 0.00 41.20 5.19
164 165 2.043953 GGGAATGACCACAGGGCC 60.044 66.667 0.00 0.00 41.20 5.80
165 166 2.763215 GGAATGACCACAGGGCCA 59.237 61.111 6.18 0.00 37.90 5.36
166 167 1.307647 GGAATGACCACAGGGCCAT 59.692 57.895 6.18 0.00 37.90 4.40
167 168 0.753111 GGAATGACCACAGGGCCATC 60.753 60.000 6.18 0.00 37.90 3.51
168 169 0.753111 GAATGACCACAGGGCCATCC 60.753 60.000 6.18 0.00 37.90 3.51
206 207 3.155167 GGGGTGGCGGAGGAGTAG 61.155 72.222 0.00 0.00 0.00 2.57
207 208 3.155167 GGGTGGCGGAGGAGTAGG 61.155 72.222 0.00 0.00 0.00 3.18
208 209 2.043248 GGTGGCGGAGGAGTAGGA 60.043 66.667 0.00 0.00 0.00 2.94
209 210 2.424733 GGTGGCGGAGGAGTAGGAC 61.425 68.421 0.00 0.00 0.00 3.85
210 211 2.043248 TGGCGGAGGAGTAGGACC 60.043 66.667 0.00 0.00 0.00 4.46
211 212 3.217743 GGCGGAGGAGTAGGACCG 61.218 72.222 0.00 0.00 46.74 4.79
212 213 3.217743 GCGGAGGAGTAGGACCGG 61.218 72.222 0.00 0.00 44.61 5.28
213 214 2.593978 CGGAGGAGTAGGACCGGA 59.406 66.667 9.46 0.00 41.41 5.14
214 215 1.526455 CGGAGGAGTAGGACCGGAG 60.526 68.421 9.46 0.00 41.41 4.63
215 216 1.829096 GGAGGAGTAGGACCGGAGC 60.829 68.421 9.46 0.00 0.00 4.70
216 217 2.124236 AGGAGTAGGACCGGAGCG 60.124 66.667 9.46 0.00 0.00 5.03
217 218 2.439883 GGAGTAGGACCGGAGCGT 60.440 66.667 9.46 3.74 0.00 5.07
218 219 2.772691 GGAGTAGGACCGGAGCGTG 61.773 68.421 9.46 0.00 0.00 5.34
219 220 2.754658 AGTAGGACCGGAGCGTGG 60.755 66.667 9.46 0.00 0.00 4.94
220 221 4.509737 GTAGGACCGGAGCGTGGC 62.510 72.222 9.46 0.00 0.00 5.01
276 277 3.878667 GAGGGGGCGGGGATCAAG 61.879 72.222 0.00 0.00 0.00 3.02
283 284 4.161295 CGGGGATCAAGGCGCAGA 62.161 66.667 10.83 3.97 0.00 4.26
284 285 2.203126 GGGGATCAAGGCGCAGAG 60.203 66.667 10.83 0.00 0.00 3.35
285 286 2.203126 GGGATCAAGGCGCAGAGG 60.203 66.667 10.83 0.00 0.00 3.69
286 287 2.203126 GGATCAAGGCGCAGAGGG 60.203 66.667 10.83 0.00 0.00 4.30
287 288 2.203126 GATCAAGGCGCAGAGGGG 60.203 66.667 10.83 0.00 0.00 4.79
288 289 3.011517 ATCAAGGCGCAGAGGGGT 61.012 61.111 10.83 0.00 0.00 4.95
289 290 2.932130 GATCAAGGCGCAGAGGGGTC 62.932 65.000 10.83 0.00 0.00 4.46
341 342 3.934962 GGGAGGCCAGATCCGCTC 61.935 72.222 5.01 0.00 37.75 5.03
342 343 3.934962 GGAGGCCAGATCCGCTCC 61.935 72.222 5.01 0.00 0.00 4.70
343 344 4.292178 GAGGCCAGATCCGCTCCG 62.292 72.222 5.01 0.00 0.00 4.63
358 359 4.530857 CCGCCGCCACCTTCCTAG 62.531 72.222 0.00 0.00 0.00 3.02
360 361 4.176752 GCCGCCACCTTCCTAGGG 62.177 72.222 9.46 0.00 46.58 3.53
361 362 4.176752 CCGCCACCTTCCTAGGGC 62.177 72.222 9.46 1.81 46.58 5.19
362 363 3.083997 CGCCACCTTCCTAGGGCT 61.084 66.667 9.46 0.00 46.58 5.19
363 364 2.911928 GCCACCTTCCTAGGGCTC 59.088 66.667 9.46 0.00 46.58 4.70
364 365 3.095347 GCCACCTTCCTAGGGCTCG 62.095 68.421 9.46 0.00 46.58 5.03
365 366 2.435693 CCACCTTCCTAGGGCTCGG 61.436 68.421 9.46 6.95 46.58 4.63
366 367 2.764547 ACCTTCCTAGGGCTCGGC 60.765 66.667 9.46 0.00 46.58 5.54
367 368 3.917760 CCTTCCTAGGGCTCGGCG 61.918 72.222 9.46 0.00 37.94 6.46
368 369 4.593864 CTTCCTAGGGCTCGGCGC 62.594 72.222 9.46 0.00 41.91 6.53
470 471 4.135153 CCCGTGTCGCCAGAGGAG 62.135 72.222 0.00 0.00 0.00 3.69
471 472 4.135153 CCGTGTCGCCAGAGGAGG 62.135 72.222 0.00 0.00 0.00 4.30
479 480 3.522731 CCAGAGGAGGCGACGGAG 61.523 72.222 0.00 0.00 0.00 4.63
480 481 3.522731 CAGAGGAGGCGACGGAGG 61.523 72.222 0.00 0.00 0.00 4.30
481 482 4.824515 AGAGGAGGCGACGGAGGG 62.825 72.222 0.00 0.00 0.00 4.30
490 491 3.400054 GACGGAGGGGGTGGGAAG 61.400 72.222 0.00 0.00 0.00 3.46
517 518 6.783708 GGGGGATTGTGTTAATTATTGTCA 57.216 37.500 0.00 0.00 0.00 3.58
518 519 7.360113 GGGGGATTGTGTTAATTATTGTCAT 57.640 36.000 0.00 0.00 0.00 3.06
519 520 7.791029 GGGGGATTGTGTTAATTATTGTCATT 58.209 34.615 0.00 0.00 0.00 2.57
520 521 7.710475 GGGGGATTGTGTTAATTATTGTCATTG 59.290 37.037 0.00 0.00 0.00 2.82
521 522 8.257306 GGGGATTGTGTTAATTATTGTCATTGT 58.743 33.333 0.00 0.00 0.00 2.71
522 523 9.301153 GGGATTGTGTTAATTATTGTCATTGTC 57.699 33.333 0.00 0.00 0.00 3.18
523 524 9.853555 GGATTGTGTTAATTATTGTCATTGTCA 57.146 29.630 0.00 0.00 0.00 3.58
537 538 8.939201 TTGTCATTGTCATTTTTCTTAAAGCA 57.061 26.923 0.00 0.00 0.00 3.91
538 539 8.939201 TGTCATTGTCATTTTTCTTAAAGCAA 57.061 26.923 0.00 0.00 0.00 3.91
539 540 9.545105 TGTCATTGTCATTTTTCTTAAAGCAAT 57.455 25.926 0.00 0.00 0.00 3.56
550 551 9.869757 TTTTTCTTAAAGCAATTATAAGCTCCC 57.130 29.630 0.13 0.00 40.90 4.30
551 552 8.823220 TTTCTTAAAGCAATTATAAGCTCCCT 57.177 30.769 0.13 0.00 40.90 4.20
552 553 8.451908 TTCTTAAAGCAATTATAAGCTCCCTC 57.548 34.615 0.13 0.00 40.90 4.30
553 554 7.573710 TCTTAAAGCAATTATAAGCTCCCTCA 58.426 34.615 0.13 0.00 40.90 3.86
554 555 8.052748 TCTTAAAGCAATTATAAGCTCCCTCAA 58.947 33.333 0.13 0.00 40.90 3.02
555 556 6.456795 AAAGCAATTATAAGCTCCCTCAAC 57.543 37.500 0.13 0.00 40.90 3.18
556 557 5.379706 AGCAATTATAAGCTCCCTCAACT 57.620 39.130 0.00 0.00 36.00 3.16
557 558 5.760131 AGCAATTATAAGCTCCCTCAACTT 58.240 37.500 0.00 0.00 36.00 2.66
558 559 5.591877 AGCAATTATAAGCTCCCTCAACTTG 59.408 40.000 0.00 0.00 36.00 3.16
559 560 5.734503 GCAATTATAAGCTCCCTCAACTTGC 60.735 44.000 0.00 0.00 0.00 4.01
560 561 4.568072 TTATAAGCTCCCTCAACTTGCA 57.432 40.909 0.00 0.00 0.00 4.08
561 562 2.949177 TAAGCTCCCTCAACTTGCAA 57.051 45.000 0.00 0.00 0.00 4.08
562 563 2.299326 AAGCTCCCTCAACTTGCAAT 57.701 45.000 0.00 0.00 0.00 3.56
563 564 2.299326 AGCTCCCTCAACTTGCAATT 57.701 45.000 0.00 0.00 0.00 2.32
564 565 2.601905 AGCTCCCTCAACTTGCAATTT 58.398 42.857 0.00 0.00 0.00 1.82
565 566 2.967887 AGCTCCCTCAACTTGCAATTTT 59.032 40.909 0.00 0.00 0.00 1.82
566 567 4.151883 AGCTCCCTCAACTTGCAATTTTA 58.848 39.130 0.00 0.00 0.00 1.52
567 568 4.219288 AGCTCCCTCAACTTGCAATTTTAG 59.781 41.667 0.00 1.36 0.00 1.85
568 569 4.021981 GCTCCCTCAACTTGCAATTTTAGT 60.022 41.667 0.00 0.00 0.00 2.24
569 570 5.183140 GCTCCCTCAACTTGCAATTTTAGTA 59.817 40.000 0.00 0.00 0.00 1.82
570 571 6.294508 GCTCCCTCAACTTGCAATTTTAGTAA 60.295 38.462 0.00 0.00 0.00 2.24
571 572 7.577616 GCTCCCTCAACTTGCAATTTTAGTAAT 60.578 37.037 0.00 0.00 0.00 1.89
572 573 8.189119 TCCCTCAACTTGCAATTTTAGTAATT 57.811 30.769 0.00 0.00 0.00 1.40
573 574 8.303876 TCCCTCAACTTGCAATTTTAGTAATTC 58.696 33.333 0.00 0.00 0.00 2.17
574 575 7.545615 CCCTCAACTTGCAATTTTAGTAATTCC 59.454 37.037 0.00 0.00 0.00 3.01
575 576 8.306761 CCTCAACTTGCAATTTTAGTAATTCCT 58.693 33.333 0.00 0.00 0.00 3.36
576 577 9.132521 CTCAACTTGCAATTTTAGTAATTCCTG 57.867 33.333 0.00 0.00 0.00 3.86
577 578 7.598493 TCAACTTGCAATTTTAGTAATTCCTGC 59.402 33.333 0.00 0.00 0.00 4.85
578 579 7.232118 ACTTGCAATTTTAGTAATTCCTGCT 57.768 32.000 0.00 0.00 0.00 4.24
579 580 7.670364 ACTTGCAATTTTAGTAATTCCTGCTT 58.330 30.769 0.00 0.00 0.00 3.91
580 581 7.814587 ACTTGCAATTTTAGTAATTCCTGCTTC 59.185 33.333 0.00 0.00 0.00 3.86
581 582 6.630071 TGCAATTTTAGTAATTCCTGCTTCC 58.370 36.000 0.00 0.00 0.00 3.46
582 583 5.743872 GCAATTTTAGTAATTCCTGCTTCCG 59.256 40.000 0.00 0.00 0.00 4.30
583 584 4.957759 TTTTAGTAATTCCTGCTTCCGC 57.042 40.909 0.00 0.00 0.00 5.54
584 585 2.614829 TAGTAATTCCTGCTTCCGCC 57.385 50.000 0.00 0.00 34.43 6.13
585 586 0.618458 AGTAATTCCTGCTTCCGCCA 59.382 50.000 0.00 0.00 34.43 5.69
586 587 0.733150 GTAATTCCTGCTTCCGCCAC 59.267 55.000 0.00 0.00 34.43 5.01
587 588 0.618458 TAATTCCTGCTTCCGCCACT 59.382 50.000 0.00 0.00 34.43 4.00
588 589 0.962356 AATTCCTGCTTCCGCCACTG 60.962 55.000 0.00 0.00 34.43 3.66
589 590 1.841302 ATTCCTGCTTCCGCCACTGA 61.841 55.000 0.00 0.00 34.43 3.41
590 591 2.731691 TTCCTGCTTCCGCCACTGAC 62.732 60.000 0.00 0.00 34.43 3.51
591 592 3.114616 CTGCTTCCGCCACTGACG 61.115 66.667 0.00 0.00 34.43 4.35
594 595 4.680237 CTTCCGCCACTGACGCCA 62.680 66.667 0.00 0.00 0.00 5.69
595 596 3.958147 CTTCCGCCACTGACGCCAT 62.958 63.158 0.00 0.00 0.00 4.40
596 597 4.758251 TCCGCCACTGACGCCATG 62.758 66.667 0.00 0.00 0.00 3.66
598 599 3.049674 CGCCACTGACGCCATGTT 61.050 61.111 0.00 0.00 0.00 2.71
599 600 1.739929 CGCCACTGACGCCATGTTA 60.740 57.895 0.00 0.00 0.00 2.41
600 601 1.794222 GCCACTGACGCCATGTTAC 59.206 57.895 0.00 0.00 0.00 2.50
601 602 1.966493 GCCACTGACGCCATGTTACG 61.966 60.000 0.00 0.00 0.00 3.18
602 603 0.669318 CCACTGACGCCATGTTACGT 60.669 55.000 5.48 5.48 46.91 3.57
606 607 4.470876 ACGCCATGTTACGTCGAG 57.529 55.556 0.00 0.00 38.28 4.04
607 608 1.878070 ACGCCATGTTACGTCGAGA 59.122 52.632 0.00 0.00 38.28 4.04
608 609 0.241749 ACGCCATGTTACGTCGAGAA 59.758 50.000 0.00 0.00 38.28 2.87
609 610 0.638746 CGCCATGTTACGTCGAGAAC 59.361 55.000 0.00 3.52 0.00 3.01
610 611 1.705256 GCCATGTTACGTCGAGAACA 58.295 50.000 16.05 16.05 39.74 3.18
611 612 2.063266 GCCATGTTACGTCGAGAACAA 58.937 47.619 17.13 5.84 38.94 2.83
612 613 2.671396 GCCATGTTACGTCGAGAACAAT 59.329 45.455 17.13 7.34 38.94 2.71
613 614 3.861113 GCCATGTTACGTCGAGAACAATA 59.139 43.478 17.13 0.65 38.94 1.90
614 615 4.506654 GCCATGTTACGTCGAGAACAATAT 59.493 41.667 17.13 3.65 38.94 1.28
615 616 5.688621 GCCATGTTACGTCGAGAACAATATA 59.311 40.000 17.13 0.09 38.94 0.86
616 617 6.365247 GCCATGTTACGTCGAGAACAATATAT 59.635 38.462 17.13 3.10 38.94 0.86
617 618 7.095774 GCCATGTTACGTCGAGAACAATATATT 60.096 37.037 17.13 0.00 38.94 1.28
618 619 8.214472 CCATGTTACGTCGAGAACAATATATTG 58.786 37.037 21.42 21.42 38.94 1.90
619 620 8.964150 CATGTTACGTCGAGAACAATATATTGA 58.036 33.333 28.13 5.44 38.94 2.57
620 621 8.914328 TGTTACGTCGAGAACAATATATTGAA 57.086 30.769 28.13 8.27 40.14 2.69
621 622 9.524106 TGTTACGTCGAGAACAATATATTGAAT 57.476 29.630 28.13 17.44 40.14 2.57
622 623 9.779237 GTTACGTCGAGAACAATATATTGAATG 57.221 33.333 28.13 14.22 40.14 2.67
623 624 9.524106 TTACGTCGAGAACAATATATTGAATGT 57.476 29.630 28.13 16.10 40.14 2.71
625 626 9.524106 ACGTCGAGAACAATATATTGAATGTAA 57.476 29.630 28.13 9.51 40.14 2.41
626 627 9.995379 CGTCGAGAACAATATATTGAATGTAAG 57.005 33.333 28.13 14.11 40.14 2.34
627 628 9.798885 GTCGAGAACAATATATTGAATGTAAGC 57.201 33.333 28.13 10.53 40.14 3.09
628 629 9.764363 TCGAGAACAATATATTGAATGTAAGCT 57.236 29.630 28.13 13.69 40.14 3.74
647 648 3.718815 GCTATCTTTGTAGCGGCTAAGT 58.281 45.455 11.98 2.08 37.88 2.24
648 649 4.120589 GCTATCTTTGTAGCGGCTAAGTT 58.879 43.478 11.98 5.64 37.88 2.66
649 650 4.571176 GCTATCTTTGTAGCGGCTAAGTTT 59.429 41.667 11.98 3.45 37.88 2.66
650 651 4.946784 ATCTTTGTAGCGGCTAAGTTTG 57.053 40.909 11.98 2.04 0.00 2.93
651 652 3.735591 TCTTTGTAGCGGCTAAGTTTGT 58.264 40.909 11.98 0.00 0.00 2.83
652 653 3.496884 TCTTTGTAGCGGCTAAGTTTGTG 59.503 43.478 11.98 0.00 0.00 3.33
653 654 2.823924 TGTAGCGGCTAAGTTTGTGA 57.176 45.000 11.98 0.00 0.00 3.58
654 655 3.114668 TGTAGCGGCTAAGTTTGTGAA 57.885 42.857 11.98 0.00 0.00 3.18
655 656 3.670625 TGTAGCGGCTAAGTTTGTGAAT 58.329 40.909 11.98 0.00 0.00 2.57
656 657 4.069304 TGTAGCGGCTAAGTTTGTGAATT 58.931 39.130 11.98 0.00 0.00 2.17
664 665 7.681065 GCGGCTAAGTTTGTGAATTATGGTTAT 60.681 37.037 0.00 0.00 0.00 1.89
666 667 8.466798 GGCTAAGTTTGTGAATTATGGTTATGT 58.533 33.333 0.00 0.00 0.00 2.29
677 678 8.798402 TGAATTATGGTTATGTCGAAACCTTTT 58.202 29.630 16.41 5.05 45.53 2.27
700 701 3.561313 GGCAAGGGATAGTTTGAGACCAA 60.561 47.826 0.00 0.00 0.00 3.67
702 703 4.807643 GCAAGGGATAGTTTGAGACCAACT 60.808 45.833 0.00 0.00 30.88 3.16
704 705 3.910627 AGGGATAGTTTGAGACCAACTGT 59.089 43.478 0.00 0.00 30.88 3.55
818 829 2.330393 GAGCGCGGCGACTATGTA 59.670 61.111 28.54 0.00 0.00 2.29
819 830 1.081376 GAGCGCGGCGACTATGTAT 60.081 57.895 28.54 0.09 0.00 2.29
820 831 1.337817 GAGCGCGGCGACTATGTATG 61.338 60.000 28.54 0.00 0.00 2.39
821 832 1.660575 GCGCGGCGACTATGTATGT 60.661 57.895 28.54 0.00 0.00 2.29
823 834 1.853319 GCGGCGACTATGTATGTGC 59.147 57.895 12.98 0.00 0.00 4.57
824 835 0.597637 GCGGCGACTATGTATGTGCT 60.598 55.000 12.98 0.00 0.00 4.40
825 836 1.335597 GCGGCGACTATGTATGTGCTA 60.336 52.381 12.98 0.00 0.00 3.49
826 837 2.585845 CGGCGACTATGTATGTGCTAG 58.414 52.381 0.00 0.00 0.00 3.42
827 838 2.031069 CGGCGACTATGTATGTGCTAGT 60.031 50.000 0.00 0.00 0.00 2.57
828 839 3.309388 GGCGACTATGTATGTGCTAGTG 58.691 50.000 0.00 0.00 0.00 2.74
972 1004 2.907236 GGGAGGAGCAGAAGAGGC 59.093 66.667 0.00 0.00 0.00 4.70
1510 1583 1.535444 TTCTTCGGCTCCCAGGACA 60.535 57.895 0.00 0.00 0.00 4.02
1769 1852 0.962356 CCGCAGCCAGGTTCTTGATT 60.962 55.000 0.00 0.00 0.00 2.57
1770 1853 0.883833 CGCAGCCAGGTTCTTGATTT 59.116 50.000 0.00 0.00 0.00 2.17
1771 1854 1.401931 CGCAGCCAGGTTCTTGATTTG 60.402 52.381 0.00 0.00 0.00 2.32
1772 1855 1.888512 GCAGCCAGGTTCTTGATTTGA 59.111 47.619 0.00 0.00 0.00 2.69
1773 1856 2.494870 GCAGCCAGGTTCTTGATTTGAT 59.505 45.455 0.00 0.00 0.00 2.57
1774 1857 3.675228 GCAGCCAGGTTCTTGATTTGATG 60.675 47.826 0.00 0.00 0.00 3.07
1915 2008 5.344743 TCCTGTGAACAAGATCTATGGAC 57.655 43.478 0.00 0.00 0.00 4.02
2009 2108 6.852853 CACTGTTACTGTTAGTTTTGCAGATG 59.147 38.462 0.00 0.00 34.60 2.90
2035 2134 6.232139 ACTTACATTTTACCACGCAGTAAC 57.768 37.500 0.00 0.00 41.61 2.50
2038 2137 3.251487 ACATTTTACCACGCAGTAACACC 59.749 43.478 0.00 0.00 41.61 4.16
2059 2158 3.002042 CCATCAGTAGCGCTTTCTGAATG 59.998 47.826 32.54 28.31 40.73 2.67
2060 2159 3.592898 TCAGTAGCGCTTTCTGAATGA 57.407 42.857 29.43 19.00 35.65 2.57
2086 2190 1.357258 GCTGTCCATGTCGAGCAGTG 61.357 60.000 0.00 0.00 0.00 3.66
2171 2275 1.662629 GCAACTGGATCATGACGACAG 59.337 52.381 17.03 17.03 35.40 3.51
2255 2366 3.014085 TACTTGGCCTCGCTTCCCG 62.014 63.158 3.32 0.00 38.61 5.14
2286 2400 2.980233 AGCAACAGGCCAAGCGAC 60.980 61.111 5.01 0.00 46.50 5.19
2312 2426 5.630680 CCGACTCATTTGAAAATTGAACTGG 59.369 40.000 0.00 0.00 35.98 4.00
2362 2477 8.450578 TCATAAAAAGAATAGGCCACATACAG 57.549 34.615 5.01 0.00 0.00 2.74
2368 2483 4.471386 AGAATAGGCCACATACAGAACAGT 59.529 41.667 5.01 0.00 0.00 3.55
2373 2488 2.783135 CCACATACAGAACAGTTGCCT 58.217 47.619 0.00 0.00 0.00 4.75
2381 2496 4.215109 ACAGAACAGTTGCCTGGTTTTAT 58.785 39.130 6.88 0.00 39.26 1.40
2438 2553 2.489722 GCCTCCTTGATTGTCCTCAAAC 59.510 50.000 0.00 0.00 37.11 2.93
2448 2563 5.534654 TGATTGTCCTCAAACTTAACCCAAG 59.465 40.000 0.00 0.00 37.11 3.61
2495 2616 4.862574 CCGTTTCAGAGTGTATTTCGATCA 59.137 41.667 0.00 0.00 0.00 2.92
2508 2629 7.118390 GTGTATTTCGATCATAGAGGAAATGGG 59.882 40.741 11.84 0.00 38.94 4.00
2509 2630 3.685139 TCGATCATAGAGGAAATGGGC 57.315 47.619 0.00 0.00 0.00 5.36
2510 2631 2.972021 TCGATCATAGAGGAAATGGGCA 59.028 45.455 0.00 0.00 0.00 5.36
2522 2643 0.322277 AATGGGCACAGACTCTGCTG 60.322 55.000 5.92 5.34 41.63 4.41
2523 2644 2.745492 GGGCACAGACTCTGCTGC 60.745 66.667 18.14 18.14 39.51 5.25
2528 2649 2.354259 GCACAGACTCTGCTGCTTTAT 58.646 47.619 18.69 0.00 39.51 1.40
2529 2650 2.746362 GCACAGACTCTGCTGCTTTATT 59.254 45.455 18.69 0.00 39.51 1.40
2535 2656 5.353678 CAGACTCTGCTGCTTTATTTAGCTT 59.646 40.000 0.00 0.00 41.76 3.74
2542 2663 4.036144 GCTGCTTTATTTAGCTTGAGGAGG 59.964 45.833 0.00 0.00 41.76 4.30
2546 2667 5.066634 GCTTTATTTAGCTTGAGGAGGTTCC 59.933 44.000 0.00 0.00 38.15 3.62
2606 2727 1.173043 TTTAACCGCCTTGCATCCTG 58.827 50.000 0.00 0.00 0.00 3.86
2613 2734 1.980232 CCTTGCATCCTGGCTTGCA 60.980 57.895 16.87 16.87 46.51 4.08
2634 2755 1.458777 CACCCCGGGTCCATAGCTA 60.459 63.158 21.85 0.00 31.02 3.32
2638 2759 1.348064 CCCGGGTCCATAGCTAATCA 58.652 55.000 14.18 0.00 0.00 2.57
2640 2761 2.289694 CCCGGGTCCATAGCTAATCAAG 60.290 54.545 14.18 0.00 0.00 3.02
2641 2762 2.368875 CCGGGTCCATAGCTAATCAAGT 59.631 50.000 0.00 0.00 0.00 3.16
2642 2763 3.555168 CCGGGTCCATAGCTAATCAAGTC 60.555 52.174 0.00 0.00 0.00 3.01
2643 2764 3.069586 CGGGTCCATAGCTAATCAAGTCA 59.930 47.826 0.00 0.00 0.00 3.41
2645 2766 5.241662 GGGTCCATAGCTAATCAAGTCATC 58.758 45.833 0.00 0.00 0.00 2.92
2646 2767 4.926238 GGTCCATAGCTAATCAAGTCATCG 59.074 45.833 0.00 0.00 0.00 3.84
2648 2769 5.986135 GTCCATAGCTAATCAAGTCATCGTT 59.014 40.000 0.00 0.00 0.00 3.85
2653 2783 5.223382 AGCTAATCAAGTCATCGTTATCCG 58.777 41.667 0.00 0.00 38.13 4.18
2663 2793 5.875910 AGTCATCGTTATCCGTCCTATCTAG 59.124 44.000 0.00 0.00 37.94 2.43
2683 2813 8.879342 ATCTAGAGGATTTCAAAGACATTACG 57.121 34.615 0.00 0.00 0.00 3.18
2690 2820 9.238368 AGGATTTCAAAGACATTACGGAATTAA 57.762 29.630 0.00 0.00 0.00 1.40
2691 2821 9.503427 GGATTTCAAAGACATTACGGAATTAAG 57.497 33.333 0.00 0.00 0.00 1.85
2695 2825 8.786826 TCAAAGACATTACGGAATTAAGATGT 57.213 30.769 0.00 0.00 0.00 3.06
2696 2826 9.878667 TCAAAGACATTACGGAATTAAGATGTA 57.121 29.630 0.00 0.00 0.00 2.29
2699 2829 8.744008 AGACATTACGGAATTAAGATGTATCG 57.256 34.615 0.00 0.00 0.00 2.92
2700 2830 7.813148 AGACATTACGGAATTAAGATGTATCGG 59.187 37.037 0.00 0.00 0.00 4.18
2701 2831 6.872020 ACATTACGGAATTAAGATGTATCGGG 59.128 38.462 0.00 0.00 0.00 5.14
2702 2832 4.950205 ACGGAATTAAGATGTATCGGGT 57.050 40.909 0.00 0.00 0.00 5.28
2703 2833 5.286267 ACGGAATTAAGATGTATCGGGTT 57.714 39.130 0.00 0.00 0.00 4.11
2704 2834 5.677567 ACGGAATTAAGATGTATCGGGTTT 58.322 37.500 0.00 0.00 0.00 3.27
2705 2835 6.819284 ACGGAATTAAGATGTATCGGGTTTA 58.181 36.000 0.00 0.00 0.00 2.01
2706 2836 6.927381 ACGGAATTAAGATGTATCGGGTTTAG 59.073 38.462 0.00 0.00 0.00 1.85
2707 2837 6.128634 CGGAATTAAGATGTATCGGGTTTAGC 60.129 42.308 0.00 0.00 0.00 3.09
2708 2838 6.148976 GGAATTAAGATGTATCGGGTTTAGCC 59.851 42.308 0.00 0.00 0.00 3.93
2709 2839 5.617528 TTAAGATGTATCGGGTTTAGCCA 57.382 39.130 0.00 0.00 39.65 4.75
2710 2840 4.497291 AAGATGTATCGGGTTTAGCCAA 57.503 40.909 0.00 0.00 39.65 4.52
2711 2841 4.497291 AGATGTATCGGGTTTAGCCAAA 57.503 40.909 0.00 0.00 39.65 3.28
2712 2842 4.451900 AGATGTATCGGGTTTAGCCAAAG 58.548 43.478 0.00 0.00 39.65 2.77
2713 2843 2.361789 TGTATCGGGTTTAGCCAAAGC 58.638 47.619 0.00 0.00 40.64 3.51
2714 2844 2.290387 TGTATCGGGTTTAGCCAAAGCA 60.290 45.455 8.98 0.00 42.66 3.91
2715 2845 2.143876 ATCGGGTTTAGCCAAAGCAT 57.856 45.000 8.98 0.00 42.66 3.79
2716 2846 2.791347 TCGGGTTTAGCCAAAGCATA 57.209 45.000 8.98 0.00 42.66 3.14
2717 2847 2.639065 TCGGGTTTAGCCAAAGCATAG 58.361 47.619 8.98 0.48 42.66 2.23
2718 2848 1.065551 CGGGTTTAGCCAAAGCATAGC 59.934 52.381 8.98 0.00 42.66 2.97
2719 2849 2.379005 GGGTTTAGCCAAAGCATAGCT 58.621 47.619 8.98 0.00 42.66 3.32
2720 2850 2.359214 GGGTTTAGCCAAAGCATAGCTC 59.641 50.000 8.98 0.00 42.66 4.09
2721 2851 3.016736 GGTTTAGCCAAAGCATAGCTCA 58.983 45.455 1.81 0.00 43.56 4.26
2722 2852 3.181496 GGTTTAGCCAAAGCATAGCTCAC 60.181 47.826 1.81 0.00 43.56 3.51
2723 2853 1.939974 TAGCCAAAGCATAGCTCACG 58.060 50.000 0.00 0.00 43.56 4.35
2724 2854 0.250234 AGCCAAAGCATAGCTCACGA 59.750 50.000 0.00 0.00 43.56 4.35
2725 2855 0.375106 GCCAAAGCATAGCTCACGAC 59.625 55.000 0.00 0.00 38.25 4.34
2726 2856 1.009829 CCAAAGCATAGCTCACGACC 58.990 55.000 0.00 0.00 38.25 4.79
2727 2857 1.009829 CAAAGCATAGCTCACGACCC 58.990 55.000 0.00 0.00 38.25 4.46
2728 2858 0.107654 AAAGCATAGCTCACGACCCC 60.108 55.000 0.00 0.00 38.25 4.95
2729 2859 1.264749 AAGCATAGCTCACGACCCCA 61.265 55.000 0.00 0.00 38.25 4.96
2730 2860 1.521681 GCATAGCTCACGACCCCAC 60.522 63.158 0.00 0.00 0.00 4.61
2731 2861 1.961180 GCATAGCTCACGACCCCACT 61.961 60.000 0.00 0.00 0.00 4.00
2732 2862 1.399714 CATAGCTCACGACCCCACTA 58.600 55.000 0.00 0.00 0.00 2.74
2733 2863 1.067212 CATAGCTCACGACCCCACTAC 59.933 57.143 0.00 0.00 0.00 2.73
2734 2864 0.330604 TAGCTCACGACCCCACTACT 59.669 55.000 0.00 0.00 0.00 2.57
2735 2865 0.966370 AGCTCACGACCCCACTACTC 60.966 60.000 0.00 0.00 0.00 2.59
2736 2866 1.801332 CTCACGACCCCACTACTCG 59.199 63.158 0.00 0.00 0.00 4.18
2737 2867 1.654954 CTCACGACCCCACTACTCGG 61.655 65.000 0.00 0.00 0.00 4.63
2738 2868 3.066814 ACGACCCCACTACTCGGC 61.067 66.667 0.00 0.00 0.00 5.54
2739 2869 3.066190 CGACCCCACTACTCGGCA 61.066 66.667 0.00 0.00 0.00 5.69
2740 2870 2.642254 CGACCCCACTACTCGGCAA 61.642 63.158 0.00 0.00 0.00 4.52
2741 2871 1.675219 GACCCCACTACTCGGCAAA 59.325 57.895 0.00 0.00 0.00 3.68
2742 2872 0.252197 GACCCCACTACTCGGCAAAT 59.748 55.000 0.00 0.00 0.00 2.32
2743 2873 0.696501 ACCCCACTACTCGGCAAATT 59.303 50.000 0.00 0.00 0.00 1.82
2744 2874 1.074889 ACCCCACTACTCGGCAAATTT 59.925 47.619 0.00 0.00 0.00 1.82
2745 2875 1.472480 CCCCACTACTCGGCAAATTTG 59.528 52.381 14.03 14.03 0.00 2.32
2746 2876 1.472480 CCCACTACTCGGCAAATTTGG 59.528 52.381 19.47 5.55 0.00 3.28
2747 2877 2.159382 CCACTACTCGGCAAATTTGGT 58.841 47.619 19.47 10.98 0.00 3.67
2748 2878 2.556622 CCACTACTCGGCAAATTTGGTT 59.443 45.455 19.47 0.00 0.00 3.67
2749 2879 3.005367 CCACTACTCGGCAAATTTGGTTT 59.995 43.478 19.47 0.00 0.00 3.27
2762 2892 6.816377 CAAATTTGGTTTGTTATTGCTACCG 58.184 36.000 10.49 0.00 41.80 4.02
2763 2893 3.562567 TTGGTTTGTTATTGCTACCGC 57.437 42.857 0.00 0.00 0.00 5.68
2764 2894 2.505405 TGGTTTGTTATTGCTACCGCA 58.495 42.857 0.00 0.00 46.24 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.040198 AACCCTCCCCTCCCTCCC 62.040 72.222 0.00 0.00 0.00 4.30
29 30 2.692741 CAACCCTCCCCTCCCTCC 60.693 72.222 0.00 0.00 0.00 4.30
30 31 3.412408 GCAACCCTCCCCTCCCTC 61.412 72.222 0.00 0.00 0.00 4.30
33 34 4.410400 CACGCAACCCTCCCCTCC 62.410 72.222 0.00 0.00 0.00 4.30
34 35 4.410400 CCACGCAACCCTCCCCTC 62.410 72.222 0.00 0.00 0.00 4.30
35 36 4.974438 TCCACGCAACCCTCCCCT 62.974 66.667 0.00 0.00 0.00 4.79
36 37 3.728373 ATCCACGCAACCCTCCCC 61.728 66.667 0.00 0.00 0.00 4.81
37 38 2.438434 CATCCACGCAACCCTCCC 60.438 66.667 0.00 0.00 0.00 4.30
38 39 2.438434 CCATCCACGCAACCCTCC 60.438 66.667 0.00 0.00 0.00 4.30
39 40 2.438434 CCCATCCACGCAACCCTC 60.438 66.667 0.00 0.00 0.00 4.30
40 41 4.740822 GCCCATCCACGCAACCCT 62.741 66.667 0.00 0.00 0.00 4.34
59 60 4.569180 CCTGGTAGCGGCCATGGG 62.569 72.222 15.13 0.00 37.96 4.00
69 70 4.838152 ATGCGGCGTGCCTGGTAG 62.838 66.667 9.37 0.00 45.60 3.18
70 71 4.830765 GATGCGGCGTGCCTGGTA 62.831 66.667 9.37 0.00 45.60 3.25
93 94 2.362369 ATCACTCCTGCCAGTCCGG 61.362 63.158 0.00 0.00 38.11 5.14
94 95 1.153489 CATCACTCCTGCCAGTCCG 60.153 63.158 0.00 0.00 0.00 4.79
95 96 1.222936 CCATCACTCCTGCCAGTCC 59.777 63.158 0.00 0.00 0.00 3.85
96 97 1.451028 GCCATCACTCCTGCCAGTC 60.451 63.158 0.00 0.00 0.00 3.51
97 98 2.194388 CTGCCATCACTCCTGCCAGT 62.194 60.000 0.00 0.00 0.00 4.00
98 99 1.451567 CTGCCATCACTCCTGCCAG 60.452 63.158 0.00 0.00 0.00 4.85
99 100 2.672908 CTGCCATCACTCCTGCCA 59.327 61.111 0.00 0.00 0.00 4.92
100 101 2.827642 GCTGCCATCACTCCTGCC 60.828 66.667 0.00 0.00 0.00 4.85
101 102 2.827642 GGCTGCCATCACTCCTGC 60.828 66.667 15.17 0.00 0.00 4.85
102 103 2.513204 CGGCTGCCATCACTCCTG 60.513 66.667 20.29 0.00 0.00 3.86
103 104 4.479993 GCGGCTGCCATCACTCCT 62.480 66.667 20.29 0.00 33.98 3.69
104 105 4.479993 AGCGGCTGCCATCACTCC 62.480 66.667 20.29 0.00 44.31 3.85
105 106 3.200593 CAGCGGCTGCCATCACTC 61.201 66.667 18.16 0.00 44.31 3.51
106 107 4.790962 CCAGCGGCTGCCATCACT 62.791 66.667 24.27 7.09 44.31 3.41
128 129 3.359523 GTTCGTTTCGGGTGCCCC 61.360 66.667 0.99 0.30 41.09 5.80
129 130 2.592287 TGTTCGTTTCGGGTGCCC 60.592 61.111 0.00 0.00 0.00 5.36
130 131 2.613506 CCTGTTCGTTTCGGGTGCC 61.614 63.158 0.00 0.00 0.00 5.01
131 132 2.613506 CCCTGTTCGTTTCGGGTGC 61.614 63.158 0.00 0.00 31.89 5.01
132 133 0.533308 TTCCCTGTTCGTTTCGGGTG 60.533 55.000 0.00 0.00 37.92 4.61
133 134 0.399075 ATTCCCTGTTCGTTTCGGGT 59.601 50.000 0.00 0.00 37.92 5.28
134 135 0.802494 CATTCCCTGTTCGTTTCGGG 59.198 55.000 0.00 0.00 38.07 5.14
135 136 1.463444 GTCATTCCCTGTTCGTTTCGG 59.537 52.381 0.00 0.00 0.00 4.30
136 137 1.463444 GGTCATTCCCTGTTCGTTTCG 59.537 52.381 0.00 0.00 0.00 3.46
137 138 2.225727 GTGGTCATTCCCTGTTCGTTTC 59.774 50.000 0.00 0.00 34.77 2.78
138 139 2.227194 GTGGTCATTCCCTGTTCGTTT 58.773 47.619 0.00 0.00 34.77 3.60
139 140 1.142060 TGTGGTCATTCCCTGTTCGTT 59.858 47.619 0.00 0.00 34.77 3.85
140 141 0.762418 TGTGGTCATTCCCTGTTCGT 59.238 50.000 0.00 0.00 34.77 3.85
141 142 1.442769 CTGTGGTCATTCCCTGTTCG 58.557 55.000 0.00 0.00 34.77 3.95
142 143 1.614317 CCCTGTGGTCATTCCCTGTTC 60.614 57.143 0.00 0.00 34.77 3.18
143 144 0.405585 CCCTGTGGTCATTCCCTGTT 59.594 55.000 0.00 0.00 34.77 3.16
144 145 2.078452 CCCTGTGGTCATTCCCTGT 58.922 57.895 0.00 0.00 34.77 4.00
145 146 1.379044 GCCCTGTGGTCATTCCCTG 60.379 63.158 0.00 0.00 34.77 4.45
146 147 2.616458 GGCCCTGTGGTCATTCCCT 61.616 63.158 0.00 0.00 35.79 4.20
147 148 2.043953 GGCCCTGTGGTCATTCCC 60.044 66.667 0.00 0.00 35.79 3.97
148 149 2.763215 TGGCCCTGTGGTCATTCC 59.237 61.111 0.00 0.00 42.76 3.01
189 190 3.155167 CTACTCCTCCGCCACCCC 61.155 72.222 0.00 0.00 0.00 4.95
190 191 3.155167 CCTACTCCTCCGCCACCC 61.155 72.222 0.00 0.00 0.00 4.61
191 192 2.043248 TCCTACTCCTCCGCCACC 60.043 66.667 0.00 0.00 0.00 4.61
192 193 2.424733 GGTCCTACTCCTCCGCCAC 61.425 68.421 0.00 0.00 0.00 5.01
193 194 2.043248 GGTCCTACTCCTCCGCCA 60.043 66.667 0.00 0.00 0.00 5.69
194 195 3.217743 CGGTCCTACTCCTCCGCC 61.218 72.222 0.00 0.00 36.68 6.13
195 196 3.217743 CCGGTCCTACTCCTCCGC 61.218 72.222 0.00 0.00 41.38 5.54
196 197 1.526455 CTCCGGTCCTACTCCTCCG 60.526 68.421 0.00 0.00 42.22 4.63
197 198 1.829096 GCTCCGGTCCTACTCCTCC 60.829 68.421 0.00 0.00 0.00 4.30
198 199 2.188161 CGCTCCGGTCCTACTCCTC 61.188 68.421 0.00 0.00 0.00 3.71
199 200 2.124236 CGCTCCGGTCCTACTCCT 60.124 66.667 0.00 0.00 0.00 3.69
200 201 2.439883 ACGCTCCGGTCCTACTCC 60.440 66.667 0.00 0.00 0.00 3.85
201 202 2.772691 CCACGCTCCGGTCCTACTC 61.773 68.421 0.00 0.00 0.00 2.59
202 203 2.754658 CCACGCTCCGGTCCTACT 60.755 66.667 0.00 0.00 0.00 2.57
203 204 4.509737 GCCACGCTCCGGTCCTAC 62.510 72.222 0.00 0.00 0.00 3.18
259 260 3.878667 CTTGATCCCCGCCCCCTC 61.879 72.222 0.00 0.00 0.00 4.30
266 267 4.161295 TCTGCGCCTTGATCCCCG 62.161 66.667 4.18 0.00 0.00 5.73
267 268 2.203126 CTCTGCGCCTTGATCCCC 60.203 66.667 4.18 0.00 0.00 4.81
268 269 2.203126 CCTCTGCGCCTTGATCCC 60.203 66.667 4.18 0.00 0.00 3.85
269 270 2.203126 CCCTCTGCGCCTTGATCC 60.203 66.667 4.18 0.00 0.00 3.36
270 271 2.203126 CCCCTCTGCGCCTTGATC 60.203 66.667 4.18 0.00 0.00 2.92
271 272 3.011517 ACCCCTCTGCGCCTTGAT 61.012 61.111 4.18 0.00 0.00 2.57
272 273 3.706373 GACCCCTCTGCGCCTTGA 61.706 66.667 4.18 0.00 0.00 3.02
324 325 3.934962 GAGCGGATCTGGCCTCCC 61.935 72.222 3.32 0.00 0.00 4.30
325 326 3.934962 GGAGCGGATCTGGCCTCC 61.935 72.222 3.32 11.21 0.00 4.30
326 327 4.292178 CGGAGCGGATCTGGCCTC 62.292 72.222 3.32 2.22 0.00 4.70
341 342 4.530857 CTAGGAAGGTGGCGGCGG 62.531 72.222 9.78 0.00 0.00 6.13
342 343 4.530857 CCTAGGAAGGTGGCGGCG 62.531 72.222 1.05 0.51 38.19 6.46
343 344 4.176752 CCCTAGGAAGGTGGCGGC 62.177 72.222 11.48 0.00 41.89 6.53
344 345 4.176752 GCCCTAGGAAGGTGGCGG 62.177 72.222 11.48 0.00 41.89 6.13
345 346 3.083997 AGCCCTAGGAAGGTGGCG 61.084 66.667 11.48 0.00 41.89 5.69
346 347 2.911928 GAGCCCTAGGAAGGTGGC 59.088 66.667 11.48 3.52 41.89 5.01
347 348 2.435693 CCGAGCCCTAGGAAGGTGG 61.436 68.421 11.48 1.06 41.89 4.61
348 349 3.095347 GCCGAGCCCTAGGAAGGTG 62.095 68.421 11.48 0.00 41.89 4.00
349 350 2.764547 GCCGAGCCCTAGGAAGGT 60.765 66.667 11.48 0.00 41.89 3.50
350 351 3.917760 CGCCGAGCCCTAGGAAGG 61.918 72.222 11.48 8.80 43.25 3.46
351 352 4.593864 GCGCCGAGCCCTAGGAAG 62.594 72.222 11.48 0.00 40.81 3.46
413 414 2.907917 CTAGGACCTCCCTCGCCG 60.908 72.222 0.00 0.00 43.31 6.46
414 415 3.228017 GCTAGGACCTCCCTCGCC 61.228 72.222 0.00 0.00 45.28 5.54
415 416 3.597728 CGCTAGGACCTCCCTCGC 61.598 72.222 0.00 0.00 43.31 5.03
416 417 2.907917 CCGCTAGGACCTCCCTCG 60.908 72.222 0.00 0.00 43.31 4.63
417 418 3.228017 GCCGCTAGGACCTCCCTC 61.228 72.222 0.00 0.00 43.31 4.30
453 454 4.135153 CTCCTCTGGCGACACGGG 62.135 72.222 0.00 0.00 35.60 5.28
454 455 4.135153 CCTCCTCTGGCGACACGG 62.135 72.222 0.00 0.00 35.60 4.94
455 456 4.803426 GCCTCCTCTGGCGACACG 62.803 72.222 0.00 0.00 43.74 4.49
462 463 3.522731 CTCCGTCGCCTCCTCTGG 61.523 72.222 0.00 0.00 0.00 3.86
463 464 3.522731 CCTCCGTCGCCTCCTCTG 61.523 72.222 0.00 0.00 0.00 3.35
464 465 4.824515 CCCTCCGTCGCCTCCTCT 62.825 72.222 0.00 0.00 0.00 3.69
473 474 3.400054 CTTCCCACCCCCTCCGTC 61.400 72.222 0.00 0.00 0.00 4.79
494 495 6.783708 TGACAATAATTAACACAATCCCCC 57.216 37.500 0.00 0.00 0.00 5.40
495 496 8.257306 ACAATGACAATAATTAACACAATCCCC 58.743 33.333 0.00 0.00 0.00 4.81
496 497 9.301153 GACAATGACAATAATTAACACAATCCC 57.699 33.333 0.00 0.00 0.00 3.85
497 498 9.853555 TGACAATGACAATAATTAACACAATCC 57.146 29.630 0.00 0.00 0.00 3.01
511 512 9.545105 TGCTTTAAGAAAAATGACAATGACAAT 57.455 25.926 0.00 0.00 0.00 2.71
512 513 8.939201 TGCTTTAAGAAAAATGACAATGACAA 57.061 26.923 0.00 0.00 0.00 3.18
513 514 8.939201 TTGCTTTAAGAAAAATGACAATGACA 57.061 26.923 0.00 0.00 0.00 3.58
524 525 9.869757 GGGAGCTTATAATTGCTTTAAGAAAAA 57.130 29.630 0.00 0.00 39.91 1.94
525 526 9.255029 AGGGAGCTTATAATTGCTTTAAGAAAA 57.745 29.630 0.00 0.00 39.91 2.29
526 527 8.823220 AGGGAGCTTATAATTGCTTTAAGAAA 57.177 30.769 0.00 0.00 39.91 2.52
527 528 8.052748 TGAGGGAGCTTATAATTGCTTTAAGAA 58.947 33.333 0.00 0.00 39.91 2.52
528 529 7.573710 TGAGGGAGCTTATAATTGCTTTAAGA 58.426 34.615 0.00 0.00 39.91 2.10
529 530 7.807977 TGAGGGAGCTTATAATTGCTTTAAG 57.192 36.000 1.18 0.00 39.91 1.85
530 531 7.834181 AGTTGAGGGAGCTTATAATTGCTTTAA 59.166 33.333 1.18 0.00 39.91 1.52
531 532 7.346471 AGTTGAGGGAGCTTATAATTGCTTTA 58.654 34.615 1.18 0.00 39.91 1.85
532 533 6.190587 AGTTGAGGGAGCTTATAATTGCTTT 58.809 36.000 1.18 0.00 39.91 3.51
533 534 5.760131 AGTTGAGGGAGCTTATAATTGCTT 58.240 37.500 1.18 0.00 39.91 3.91
534 535 5.379706 AGTTGAGGGAGCTTATAATTGCT 57.620 39.130 0.00 0.00 42.82 3.91
535 536 5.734503 GCAAGTTGAGGGAGCTTATAATTGC 60.735 44.000 7.16 0.00 0.00 3.56
536 537 5.357878 TGCAAGTTGAGGGAGCTTATAATTG 59.642 40.000 7.16 0.00 0.00 2.32
537 538 5.509498 TGCAAGTTGAGGGAGCTTATAATT 58.491 37.500 7.16 0.00 0.00 1.40
538 539 5.116084 TGCAAGTTGAGGGAGCTTATAAT 57.884 39.130 7.16 0.00 0.00 1.28
539 540 4.568072 TGCAAGTTGAGGGAGCTTATAA 57.432 40.909 7.16 0.00 0.00 0.98
540 541 4.568072 TTGCAAGTTGAGGGAGCTTATA 57.432 40.909 7.16 0.00 0.00 0.98
541 542 3.439857 TTGCAAGTTGAGGGAGCTTAT 57.560 42.857 7.16 0.00 0.00 1.73
542 543 2.949177 TTGCAAGTTGAGGGAGCTTA 57.051 45.000 7.16 0.00 0.00 3.09
543 544 2.299326 ATTGCAAGTTGAGGGAGCTT 57.701 45.000 7.16 0.00 0.00 3.74
544 545 2.299326 AATTGCAAGTTGAGGGAGCT 57.701 45.000 7.16 0.00 0.00 4.09
545 546 3.391506 AAAATTGCAAGTTGAGGGAGC 57.608 42.857 13.56 0.00 0.00 4.70
546 547 5.712152 ACTAAAATTGCAAGTTGAGGGAG 57.288 39.130 24.14 13.82 0.00 4.30
547 548 7.775053 ATTACTAAAATTGCAAGTTGAGGGA 57.225 32.000 24.14 14.21 0.00 4.20
548 549 7.545615 GGAATTACTAAAATTGCAAGTTGAGGG 59.454 37.037 24.14 12.42 0.00 4.30
549 550 8.306761 AGGAATTACTAAAATTGCAAGTTGAGG 58.693 33.333 24.14 14.47 31.49 3.86
550 551 9.132521 CAGGAATTACTAAAATTGCAAGTTGAG 57.867 33.333 20.04 20.04 31.49 3.02
551 552 7.598493 GCAGGAATTACTAAAATTGCAAGTTGA 59.402 33.333 13.56 4.50 31.49 3.18
552 553 7.599998 AGCAGGAATTACTAAAATTGCAAGTTG 59.400 33.333 13.56 4.14 31.49 3.16
553 554 7.670364 AGCAGGAATTACTAAAATTGCAAGTT 58.330 30.769 6.26 6.26 31.49 2.66
554 555 7.232118 AGCAGGAATTACTAAAATTGCAAGT 57.768 32.000 4.94 0.00 31.49 3.16
555 556 7.276438 GGAAGCAGGAATTACTAAAATTGCAAG 59.724 37.037 4.94 0.00 31.49 4.01
556 557 7.096551 GGAAGCAGGAATTACTAAAATTGCAA 58.903 34.615 0.00 0.00 31.49 4.08
557 558 6.624861 CGGAAGCAGGAATTACTAAAATTGCA 60.625 38.462 0.00 0.00 31.49 4.08
558 559 5.743872 CGGAAGCAGGAATTACTAAAATTGC 59.256 40.000 0.00 0.00 0.00 3.56
577 578 3.958147 ATGGCGTCAGTGGCGGAAG 62.958 63.158 20.22 0.00 37.19 3.46
578 579 4.015406 ATGGCGTCAGTGGCGGAA 62.015 61.111 20.22 0.00 37.19 4.30
579 580 4.758251 CATGGCGTCAGTGGCGGA 62.758 66.667 20.22 0.00 37.19 5.54
581 582 1.739929 TAACATGGCGTCAGTGGCG 60.740 57.895 13.98 13.98 37.19 5.69
582 583 1.794222 GTAACATGGCGTCAGTGGC 59.206 57.895 0.00 0.00 0.00 5.01
583 584 0.669318 ACGTAACATGGCGTCAGTGG 60.669 55.000 0.00 0.00 36.54 4.00
584 585 2.822306 ACGTAACATGGCGTCAGTG 58.178 52.632 0.00 0.00 36.54 3.66
589 590 0.241749 TTCTCGACGTAACATGGCGT 59.758 50.000 11.03 11.03 44.50 5.68
590 591 0.638746 GTTCTCGACGTAACATGGCG 59.361 55.000 0.00 1.08 0.00 5.69
591 592 1.705256 TGTTCTCGACGTAACATGGC 58.295 50.000 12.35 0.00 30.88 4.40
592 593 7.869016 ATATATTGTTCTCGACGTAACATGG 57.131 36.000 15.61 0.00 35.64 3.66
593 594 8.964150 TCAATATATTGTTCTCGACGTAACATG 58.036 33.333 21.89 11.32 38.84 3.21
594 595 9.524106 TTCAATATATTGTTCTCGACGTAACAT 57.476 29.630 21.89 10.36 38.84 2.71
595 596 8.914328 TTCAATATATTGTTCTCGACGTAACA 57.086 30.769 21.89 12.35 38.84 2.41
596 597 9.779237 CATTCAATATATTGTTCTCGACGTAAC 57.221 33.333 21.89 8.31 38.84 2.50
597 598 9.524106 ACATTCAATATATTGTTCTCGACGTAA 57.476 29.630 21.89 7.99 38.84 3.18
599 600 9.524106 TTACATTCAATATATTGTTCTCGACGT 57.476 29.630 21.89 12.46 38.84 4.34
600 601 9.995379 CTTACATTCAATATATTGTTCTCGACG 57.005 33.333 21.89 8.37 38.84 5.12
601 602 9.798885 GCTTACATTCAATATATTGTTCTCGAC 57.201 33.333 21.89 6.61 38.84 4.20
602 603 9.764363 AGCTTACATTCAATATATTGTTCTCGA 57.236 29.630 21.89 2.27 38.84 4.04
614 615 8.978539 CGCTACAAAGATAGCTTACATTCAATA 58.021 33.333 0.00 0.00 44.60 1.90
615 616 7.041780 CCGCTACAAAGATAGCTTACATTCAAT 60.042 37.037 0.00 0.00 44.60 2.57
616 617 6.257849 CCGCTACAAAGATAGCTTACATTCAA 59.742 38.462 0.00 0.00 44.60 2.69
617 618 5.753438 CCGCTACAAAGATAGCTTACATTCA 59.247 40.000 0.00 0.00 44.60 2.57
618 619 5.333416 GCCGCTACAAAGATAGCTTACATTC 60.333 44.000 0.00 0.00 44.60 2.67
619 620 4.511826 GCCGCTACAAAGATAGCTTACATT 59.488 41.667 0.00 0.00 44.60 2.71
620 621 4.058817 GCCGCTACAAAGATAGCTTACAT 58.941 43.478 0.00 0.00 44.60 2.29
621 622 3.132289 AGCCGCTACAAAGATAGCTTACA 59.868 43.478 0.00 0.00 44.60 2.41
622 623 3.718815 AGCCGCTACAAAGATAGCTTAC 58.281 45.455 0.00 0.00 44.60 2.34
623 624 5.068723 ACTTAGCCGCTACAAAGATAGCTTA 59.931 40.000 8.14 0.00 44.60 3.09
624 625 2.990066 AGCCGCTACAAAGATAGCTT 57.010 45.000 0.00 0.00 44.60 3.74
625 626 3.385111 ACTTAGCCGCTACAAAGATAGCT 59.615 43.478 8.14 0.00 44.60 3.32
626 627 3.718815 ACTTAGCCGCTACAAAGATAGC 58.281 45.455 8.14 0.00 43.55 2.97
627 628 5.581085 ACAAACTTAGCCGCTACAAAGATAG 59.419 40.000 8.14 0.82 0.00 2.08
628 629 5.350365 CACAAACTTAGCCGCTACAAAGATA 59.650 40.000 8.14 0.00 0.00 1.98
629 630 4.154195 CACAAACTTAGCCGCTACAAAGAT 59.846 41.667 8.14 0.00 0.00 2.40
630 631 3.496884 CACAAACTTAGCCGCTACAAAGA 59.503 43.478 8.14 0.00 0.00 2.52
631 632 3.496884 TCACAAACTTAGCCGCTACAAAG 59.503 43.478 0.00 0.00 0.00 2.77
632 633 3.468770 TCACAAACTTAGCCGCTACAAA 58.531 40.909 0.00 0.00 0.00 2.83
633 634 3.114668 TCACAAACTTAGCCGCTACAA 57.885 42.857 0.00 0.00 0.00 2.41
634 635 2.823924 TCACAAACTTAGCCGCTACA 57.176 45.000 0.00 0.00 0.00 2.74
635 636 4.680171 AATTCACAAACTTAGCCGCTAC 57.320 40.909 0.00 0.00 0.00 3.58
636 637 5.295787 CCATAATTCACAAACTTAGCCGCTA 59.704 40.000 0.00 0.00 0.00 4.26
637 638 4.096382 CCATAATTCACAAACTTAGCCGCT 59.904 41.667 0.00 0.00 0.00 5.52
638 639 4.142469 ACCATAATTCACAAACTTAGCCGC 60.142 41.667 0.00 0.00 0.00 6.53
639 640 5.560966 ACCATAATTCACAAACTTAGCCG 57.439 39.130 0.00 0.00 0.00 5.52
640 641 8.466798 ACATAACCATAATTCACAAACTTAGCC 58.533 33.333 0.00 0.00 0.00 3.93
641 642 9.503427 GACATAACCATAATTCACAAACTTAGC 57.497 33.333 0.00 0.00 0.00 3.09
642 643 9.702726 CGACATAACCATAATTCACAAACTTAG 57.297 33.333 0.00 0.00 0.00 2.18
643 644 9.438228 TCGACATAACCATAATTCACAAACTTA 57.562 29.630 0.00 0.00 0.00 2.24
644 645 8.330466 TCGACATAACCATAATTCACAAACTT 57.670 30.769 0.00 0.00 0.00 2.66
645 646 7.915293 TCGACATAACCATAATTCACAAACT 57.085 32.000 0.00 0.00 0.00 2.66
646 647 8.846607 GTTTCGACATAACCATAATTCACAAAC 58.153 33.333 0.00 0.00 0.00 2.93
647 648 8.024285 GGTTTCGACATAACCATAATTCACAAA 58.976 33.333 11.77 0.00 43.63 2.83
648 649 7.392113 AGGTTTCGACATAACCATAATTCACAA 59.608 33.333 17.54 0.00 46.01 3.33
649 650 6.882140 AGGTTTCGACATAACCATAATTCACA 59.118 34.615 17.54 0.00 46.01 3.58
650 651 7.316544 AGGTTTCGACATAACCATAATTCAC 57.683 36.000 17.54 0.00 46.01 3.18
651 652 7.931578 AAGGTTTCGACATAACCATAATTCA 57.068 32.000 17.54 0.00 46.01 2.57
652 653 9.072294 CAAAAGGTTTCGACATAACCATAATTC 57.928 33.333 17.54 0.00 46.01 2.17
653 654 8.032451 CCAAAAGGTTTCGACATAACCATAATT 58.968 33.333 17.54 6.27 46.01 1.40
654 655 7.543756 CCAAAAGGTTTCGACATAACCATAAT 58.456 34.615 17.54 1.18 46.01 1.28
655 656 6.570764 GCCAAAAGGTTTCGACATAACCATAA 60.571 38.462 17.54 0.00 46.01 1.90
656 657 5.106078 GCCAAAAGGTTTCGACATAACCATA 60.106 40.000 17.54 0.00 46.01 2.74
664 665 1.407258 CCTTGCCAAAAGGTTTCGACA 59.593 47.619 0.00 0.00 32.78 4.35
666 667 1.036707 CCCTTGCCAAAAGGTTTCGA 58.963 50.000 3.58 0.00 35.65 3.71
677 678 2.026262 GGTCTCAAACTATCCCTTGCCA 60.026 50.000 0.00 0.00 0.00 4.92
940 972 0.966370 CTCCCGACGACCCTCTCTTT 60.966 60.000 0.00 0.00 0.00 2.52
1546 1619 4.767255 CTGAGGTGCCTGCGGTCC 62.767 72.222 0.00 0.00 0.00 4.46
1688 1767 3.083997 GGCCCATCTCCAGGTCGT 61.084 66.667 0.00 0.00 0.00 4.34
1789 1872 1.147153 GAGATGCGGAGGGGAAAGG 59.853 63.158 0.00 0.00 0.00 3.11
1854 1940 7.174426 TCAATCGTACTATCATACACTGTAGGG 59.826 40.741 1.17 0.00 0.00 3.53
1915 2008 2.732412 AATCGCCGAGATGTATCCAG 57.268 50.000 0.00 0.00 40.02 3.86
2009 2108 6.657836 ACTGCGTGGTAAAATGTAAGTATC 57.342 37.500 0.00 0.00 0.00 2.24
2035 2134 1.662629 CAGAAAGCGCTACTGATGGTG 59.337 52.381 28.71 10.37 34.07 4.17
2038 2137 3.867493 TCATTCAGAAAGCGCTACTGATG 59.133 43.478 32.38 29.11 39.78 3.07
2086 2190 0.171455 CCTCCACAGTACACTCGAGC 59.829 60.000 13.61 0.00 0.00 5.03
2171 2275 3.119849 ACTCGGATATTTGTTGCTGTTGC 60.120 43.478 0.00 0.00 40.20 4.17
2286 2400 6.142798 CAGTTCAATTTTCAAATGAGTCGGTG 59.857 38.462 0.00 0.00 0.00 4.94
2331 2445 8.250332 TGTGGCCTATTCTTTTTATGATTTGAC 58.750 33.333 3.32 0.00 0.00 3.18
2416 2531 0.250234 TGAGGACAATCAAGGAGGCG 59.750 55.000 0.00 0.00 0.00 5.52
2438 2553 1.892209 AAGCACGGACTTGGGTTAAG 58.108 50.000 0.00 0.00 42.30 1.85
2448 2563 0.884704 TGAAGCAGGAAAGCACGGAC 60.885 55.000 0.00 0.00 36.85 4.79
2495 2616 3.118531 AGTCTGTGCCCATTTCCTCTAT 58.881 45.455 0.00 0.00 0.00 1.98
2508 2629 1.800805 TAAAGCAGCAGAGTCTGTGC 58.199 50.000 26.78 26.78 41.54 4.57
2509 2630 5.447010 GCTAAATAAAGCAGCAGAGTCTGTG 60.447 44.000 21.06 17.37 42.30 3.66
2510 2631 4.633565 GCTAAATAAAGCAGCAGAGTCTGT 59.366 41.667 21.06 5.77 42.30 3.41
2522 2643 5.066634 GGAACCTCCTCAAGCTAAATAAAGC 59.933 44.000 0.00 0.00 36.80 3.51
2523 2644 6.317391 CAGGAACCTCCTCAAGCTAAATAAAG 59.683 42.308 0.00 0.00 45.66 1.85
2528 2649 2.290323 GCAGGAACCTCCTCAAGCTAAA 60.290 50.000 0.00 0.00 45.66 1.85
2529 2650 1.279271 GCAGGAACCTCCTCAAGCTAA 59.721 52.381 0.00 0.00 45.66 3.09
2535 2656 0.832135 AGAACGCAGGAACCTCCTCA 60.832 55.000 0.00 0.00 45.66 3.86
2542 2663 3.547214 CGATAGAGAGAGAACGCAGGAAC 60.547 52.174 0.00 0.00 39.76 3.62
2546 2667 1.265635 CCCGATAGAGAGAGAACGCAG 59.734 57.143 0.00 0.00 39.76 5.18
2574 2695 3.322369 GCGGTTAAATTCCCCTTGTTTG 58.678 45.455 0.00 0.00 0.00 2.93
2575 2696 2.300723 GGCGGTTAAATTCCCCTTGTTT 59.699 45.455 0.00 0.00 0.00 2.83
2590 2711 2.361610 CCAGGATGCAAGGCGGTT 60.362 61.111 0.00 0.00 31.97 4.44
2613 2734 1.993391 CTATGGACCCGGGGTGTGT 60.993 63.158 26.67 11.17 35.25 3.72
2622 2743 4.689612 TGACTTGATTAGCTATGGACCC 57.310 45.455 0.00 0.00 0.00 4.46
2641 2762 8.940489 TCCTCTAGATAGGACGGATAACGATGA 61.940 44.444 0.00 0.00 42.34 2.92
2642 2763 6.852704 TCCTCTAGATAGGACGGATAACGATG 60.853 46.154 0.00 0.00 42.34 3.84
2643 2764 5.189342 TCCTCTAGATAGGACGGATAACGAT 59.811 44.000 0.00 0.00 42.34 3.73
2645 2766 4.829968 TCCTCTAGATAGGACGGATAACG 58.170 47.826 0.00 0.00 40.86 3.18
2663 2793 6.737254 TTCCGTAATGTCTTTGAAATCCTC 57.263 37.500 0.00 0.00 0.00 3.71
2683 2813 6.148976 GGCTAAACCCGATACATCTTAATTCC 59.851 42.308 0.00 0.00 0.00 3.01
2690 2820 4.451900 CTTTGGCTAAACCCGATACATCT 58.548 43.478 0.00 0.00 37.83 2.90
2691 2821 3.003378 GCTTTGGCTAAACCCGATACATC 59.997 47.826 0.00 0.00 37.83 3.06
2692 2822 2.949644 GCTTTGGCTAAACCCGATACAT 59.050 45.455 0.00 0.00 37.83 2.29
2693 2823 2.290387 TGCTTTGGCTAAACCCGATACA 60.290 45.455 0.00 0.00 39.59 2.29
2694 2824 2.361789 TGCTTTGGCTAAACCCGATAC 58.638 47.619 0.00 0.00 39.59 2.24
2695 2825 2.791347 TGCTTTGGCTAAACCCGATA 57.209 45.000 0.00 0.00 39.59 2.92
2696 2826 2.143876 ATGCTTTGGCTAAACCCGAT 57.856 45.000 0.00 0.00 39.59 4.18
2697 2827 2.639065 CTATGCTTTGGCTAAACCCGA 58.361 47.619 0.00 0.00 39.59 5.14
2698 2828 1.065551 GCTATGCTTTGGCTAAACCCG 59.934 52.381 0.00 0.00 39.59 5.28
2699 2829 2.359214 GAGCTATGCTTTGGCTAAACCC 59.641 50.000 0.00 0.00 39.88 4.11
2700 2830 3.016736 TGAGCTATGCTTTGGCTAAACC 58.983 45.455 0.00 0.00 39.88 3.27
2701 2831 3.485877 CGTGAGCTATGCTTTGGCTAAAC 60.486 47.826 0.00 1.10 39.88 2.01
2702 2832 2.677836 CGTGAGCTATGCTTTGGCTAAA 59.322 45.455 0.00 0.00 39.88 1.85
2703 2833 2.093711 TCGTGAGCTATGCTTTGGCTAA 60.094 45.455 0.00 0.00 39.88 3.09
2704 2834 1.480545 TCGTGAGCTATGCTTTGGCTA 59.519 47.619 0.00 0.00 39.88 3.93
2705 2835 0.250234 TCGTGAGCTATGCTTTGGCT 59.750 50.000 0.00 0.00 39.88 4.75
2706 2836 0.375106 GTCGTGAGCTATGCTTTGGC 59.625 55.000 0.00 0.00 39.88 4.52
2707 2837 1.009829 GGTCGTGAGCTATGCTTTGG 58.990 55.000 0.00 0.00 39.88 3.28
2708 2838 1.009829 GGGTCGTGAGCTATGCTTTG 58.990 55.000 0.00 0.00 39.88 2.77
2709 2839 0.107654 GGGGTCGTGAGCTATGCTTT 60.108 55.000 0.00 0.00 39.88 3.51
2710 2840 1.264749 TGGGGTCGTGAGCTATGCTT 61.265 55.000 0.00 0.00 39.88 3.91
2711 2841 1.685765 TGGGGTCGTGAGCTATGCT 60.686 57.895 0.00 0.00 43.88 3.79
2712 2842 1.521681 GTGGGGTCGTGAGCTATGC 60.522 63.158 0.00 0.00 0.00 3.14
2713 2843 1.067212 GTAGTGGGGTCGTGAGCTATG 59.933 57.143 0.00 0.00 0.00 2.23
2714 2844 1.063867 AGTAGTGGGGTCGTGAGCTAT 60.064 52.381 0.00 0.00 0.00 2.97
2715 2845 0.330604 AGTAGTGGGGTCGTGAGCTA 59.669 55.000 0.00 0.00 0.00 3.32
2716 2846 0.966370 GAGTAGTGGGGTCGTGAGCT 60.966 60.000 0.00 0.00 0.00 4.09
2717 2847 1.511768 GAGTAGTGGGGTCGTGAGC 59.488 63.158 0.00 0.00 0.00 4.26
2718 2848 1.654954 CCGAGTAGTGGGGTCGTGAG 61.655 65.000 0.00 0.00 31.65 3.51
2719 2849 1.676635 CCGAGTAGTGGGGTCGTGA 60.677 63.158 0.00 0.00 31.65 4.35
2720 2850 2.882876 CCGAGTAGTGGGGTCGTG 59.117 66.667 0.00 0.00 31.65 4.35
2721 2851 3.066814 GCCGAGTAGTGGGGTCGT 61.067 66.667 0.30 0.00 31.65 4.34
2722 2852 2.162338 TTTGCCGAGTAGTGGGGTCG 62.162 60.000 0.30 0.00 0.00 4.79
2723 2853 0.252197 ATTTGCCGAGTAGTGGGGTC 59.748 55.000 0.30 0.00 0.00 4.46
2724 2854 0.696501 AATTTGCCGAGTAGTGGGGT 59.303 50.000 0.30 0.00 0.00 4.95
2725 2855 1.472480 CAAATTTGCCGAGTAGTGGGG 59.528 52.381 5.01 0.00 0.00 4.96
2726 2856 1.472480 CCAAATTTGCCGAGTAGTGGG 59.528 52.381 12.92 0.00 0.00 4.61
2727 2857 2.159382 ACCAAATTTGCCGAGTAGTGG 58.841 47.619 12.92 0.00 0.00 4.00
2728 2858 3.915437 AACCAAATTTGCCGAGTAGTG 57.085 42.857 12.92 0.00 0.00 2.74
2729 2859 4.237349 CAAACCAAATTTGCCGAGTAGT 57.763 40.909 12.92 0.58 41.30 2.73
2737 2867 9.860567 GCGGTAGCAATAACAAACCAAATTTGC 62.861 40.741 12.92 0.00 46.30 3.68
2739 2869 5.407084 GCGGTAGCAATAACAAACCAAATTT 59.593 36.000 0.00 0.00 44.35 1.82
2740 2870 4.926832 GCGGTAGCAATAACAAACCAAATT 59.073 37.500 0.00 0.00 44.35 1.82
2741 2871 4.490743 GCGGTAGCAATAACAAACCAAAT 58.509 39.130 0.00 0.00 44.35 2.32
2742 2872 3.903360 GCGGTAGCAATAACAAACCAAA 58.097 40.909 0.00 0.00 44.35 3.28
2743 2873 3.562567 GCGGTAGCAATAACAAACCAA 57.437 42.857 0.00 0.00 44.35 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.