>input_sequence_69395
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-----------------------------------------------------------------------ATGTCGGTG
ACGGGGACATCCGTGGCGGCGGCGGCCACCATGCTGGCCGCGGCGGCCGCCATCTTCATCACCTTCGTCGTCTGCTTCTA
CCTCTTCCTCTGCGCCAAGCGCTACCGGGGCGCCGCGCCCGCAATCGGCGGCGGCGGCGGCGC-----------------
------------GGGAGCGGACGGCAGGGGCCGGGGGCCGCGGTTCGTCTTCGGGGGCCCCTGCCACGGGCGGGGCCTGG
ACGAGACGGCCATCGTGGCGCTGCCGCGGAGGGAGGTCGCCCAGGGGGACCCCGCGGCCGACTGCGCCGTCTGCATCACG
GAGCTCGCCGCCGGGGACGCCGCGCGCCTGCTGCCGCGGTGCGGCCACTCGTTCCACGTGGAGTGCGTCGACATGTGGCT
CCGCTCGCACTCCACCTGCCCGCTCTGCCGGTGCGCGGTCGCCGACGAGGCGC------------CGACCGTGCAGCCCC
CCGAGGCCGATCCGGAGTCGCCCATCTTCCCCACCAACGTGCTCTTCTTCGGCTCCCAGGACACCGTGGCAACCGGCGGC
ACGCCGCGGCAGCCGGTGGGACCGCAGGCACCTCAGCCCTCCCAGGGCCCGATCGCCGGCGTCGCGGCCGTGGTCGAGGC
GGCGAGAGTAGCGGCCCTCCGGCGGCTGCTCGGCTGCGGCGGCGCGACGCCCCCGCCACCAC------CGCCGCCGCAGC
CAGGCCACGACCTGGAGATGGGCCCCGCCCAGGCCGACGGCGAGAGCAGCACGCCGCGGCCGGCGAAACCGCAGCCAGGT
TC----TTGA----------------------------------------------------------------------
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>chr5D_1_TraesCS5D01G405300
AACACCAGTGGCAGGCAGGGCCACCGGGGGGAGGGAGGGGAGGGTTGCGTGGATGGGCGCCCATGGCCGCTACCAGGCAC
GCCGCATCCCCCGCCGGACTGGCAGGAGTGATGGCAGCCGCTGGTGGGGGGGCACCCGAAACGAACAGGGAATGACCACA
GGGCCATCCCAGAACCGCGCCGGGGGGTCGGGGTGGCGGAGGAGTAGGACCGGAGCGTGGCCAGGGCACGTCGCAGCCCC
GCCGGAGCCAACCGCCGTGGAGGGGGCGGGGATCAAGGCGCAGAGGGGTCGGGGCGTGCTGCGAGGCGGGGTGGAGGAGT
GCGCGGGAGGCCAGATCCGCTCCGCCGCCACCTTCCTAGGGCTCGGCGCGGCTTCGCCGGCTGGCCCTCCGGCGGTGGCG
ATGCGGGGAAGGGCGGCGAGGGAGGTCCTAGCGGCGGCGGCGGCTAGGGTTCCCCCGTGTCGCCAGAGGAGGCGACGGAG
GGGGTGGGAAGGGGGGGGGATTGTGTTAATTATTGTCATTGTCATTTTTCTTAAAGCAATTATAAGCTCCCTCAACTTGC
AATTTTAGTAATTCCTGCTTCCGCCACTGACGCCATGTTACGTCGAGAACAATATATTGAATGTAAGCTATCTTTGTAGC
GGCTAAGTTTGTGAATTATGGTTATGTCGAAACCTTTTGGCAAGGGATAGTTTGAGACCAACTGTATATATATTCATCAA
AAGCTTACATTTCTCTGTTAAAAATA---------CTATAAAAAGCTCACATTTTCTGTATATTTTCTTTATAT-AAAAA
GGCTCACAGAGGAGCGCGGCGACTATGTATGTGCTAGTG------------GTATAACACCTCTCGCCTGTTCGGCCCAA
ATCCACTTCT------CACAC--ACACACACACACACAAATCTCTTGCAAGCAAAC-CCCCACAATTCCCAGCCGAGAAC
GCGCGGCTGGGAAAGAGAGGGTCGTCGGGAGGAGCAGAAGAGGCCGCGATTTGGGGGGCGAGGACGGATCGATGTCGGTG
ACGGGGACATCCGTGGCGGCGGCGGCCACCATGCTGGCCGCGGCGGCCGCCATCTTCATCACCTTCGTCGTCTGCTTCTA
CCTCTTCCTCTGCGCCAAGCGCTACCGGGGCGCCGCGCCCGCAATCGGCGGCGGCGGCGGCGC-----------------
------------GGGAGCGGACGGCAGGGGCCGGGGGCCGCGGTTCGTCTTCGGGGGCCCCTGCCACGGGCGGGGCCTGG
ACGAGACGGCCATCGTGGCGCTGCCGCGGAGGGAGGTCGCCCAGGGGGACCCCGCGGCCGACTGCGCCGTCTGCATCACG
GAGCTCGCCGCCGGGGACGCCGCGCGCCTGCTGCCGCGGTGCGGCCACTCGTTCCACGTGGAGTGCGTCGACATGTGGCT
CCGCTCGCACTCCACCTGCCCGCTCTGCCGGTGCGCGGTCGCCGACGAGGCGC------------CGACCGTGCAGCCCC
CCGAGGCCGATCCGGAGTCGCCCATCTTCCCCACCAACGTGCTCTTCTTCGGCTCCCAGGACACCGTGGCAACCGGCGGC
ACGCCGCGGCAGCCGGTGGGACCGCAGGCACCTCAGCCCTCCCAGGGCCCGATCGCCGGCGTCGCGGCCGTGGTCGAGGC
GGCGAGAGTAGCGGCCCTCCGGCGGCTGCTCGGCTGCGGCGGCGCGACGCCCCCGCCACCAC------CGCCGCCGCAGC
CAGGCCACGACCTGGAGATGGGCCCCGCCCAGGCCGACGGCGAGAGCAGCACGCCGCGGCCGGCGAAACCGCAGCCAGGT
TC----TTGATTTGATGCCTCCGCCCGCCGCCCTT--TCCCCTCCGCATCTCCTTGAGCCATTTTGAGG-CACCAAAAAG
GAAGCAAATTGTACATATTCCCTA-------CAGTGTATGATAGTACGATTGAGGAACTGTATAATCCTGTGAACAAGAT
CTATGGACTG----GATACATCTCGGCGATTTGGTGCCGCCAAATCCATGAGATCTG--TGCTGTGCGGCACCGAGAAGA
AGCACTGTTACTGTTAGTTTTGCAGATGATACTTACATTTTACCACGCAGTAACACCATCAGTAGCGCTTTCTGAATGAT
G-----GATGGCTGTCCATGTCGAGCAGTGCTCGAGTGTACTGTGGAGGCACATGCGCTCATATGGGACACGTAGGCAGA
TGTTGACTAGAGAAGCAACTGGATCATGACGACAG---CAACAGCAACAAATATCCGAGTACACCGTATTT----CGTAT
TTTGTTTTGTTGAGCTGGAGTACACCGTACTTGGCCTCGCTTCCCGGCTACTCCGTC---TCAGCAACAGGCCAAGCGAC
ACCGACTCATTTGAAAATTGAACTGGCCTAATTTTTTCGCCCCAGTCAAATCATAAAAAGAAT-AGGCCACATACAGAAC
AGTTGCCTGGTTTTATTTTTTGCAACCAGCCATTTTTTCAGCTCTTCCTCCGCCTCCTTGATTGTCCTCAAACTTAACCC
AAGTCCGTGCTTTCCTGCTTCAAGTCCCGT------TTCAGAGTGTATTTCGATCATAGAGGAAATGGGCACAGACTCTG
CTGCTTTATTTAGCTTGAGGAGGTTCCTGCGTTCTCTCTCTATCGGGTCCGTCCCAAACAAGGGGAATTTAACCGCCTTG
CATCCTGGCTTGCACACACCCCGGGTCCATAGCTAATCAAGTCATCGTT---------ATCCGTCCTATCTAGAGGATTT
CAAAGACATTACGGAATTAAGATGTATCGGGTTTAGCCAAAGCATAGCTCACGACCCCACTACTCGGCAAATTTGGTTTG
TTATTGCTACCGCACAT
>chr5B_658
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-----------------ATGGTTACGCCGAAACCTTTCGGCAAGGGATAGTTTGAGACCAGCCG--TATACATTCATCAA
AAGCTTACATTTT----TTTAAAAGA---------AAATCAAAGGCTCACATAGGAGGAGTTCCACAGCAACAAAAAAAA
TGCTCACATAGGAGCGGGGCGTCGATGTGCTAGAAGTATATGTACCACCAAGTACAACACCTCTCGCCTGTTCGGCCCAA
ATCCACTTCT------CACACACACACACACACACACAAATCTCTTGCAAGCAAAC-CCCCACAATTCCCAGCCGAGAAC
GCGCGGCTGGGGAAGAGAGGGTCGTCGGGAGGAGGAGAAGAGGGCGCGATTTGGGGGGCGAGGGCGGATCGATGTCGGTG
ACGGGGACATCCGTGGCGGCGGCGGCGACCATGCTGGCCGCGGCGGCCGCCATCTTCATCACCTTCGTCGTCTGCTTCTA
CCTCTTCCTCTGCGCCAAGCGCTACCGGGGCGCCGCGCCCGCAATCGGCGGCGGCGGCGGCGGCG---------------
-----------GGGGAGCGGACGGCAGGGGCCGGGGGCCGCGGTTCGTCTTCGGGGGCCCCTGCCACGGGCGGGGCCTGG
ACGAGACGGCCATCGTGGCGCTGCCGCGGAGGGAGGTCGCCCAGGGGGACCCCGCGGCCGACTGCGCCGTCTGCATCACG
GAGCTCGCCGCCGGGGAGGCCGCGCGCCTGCTGCCGCGGTGCGGCCACTCGTTCCACGTCGAGTGCGTCGACATGTGGCT
CCGGTCGCACTCCACCTGCCCGCTCTGCCGGTGCGCCGTCGCCGACGAGGCGC------------CCACCGTGCAGCCCC
CCGAGGCCGATCCGGAGTCGCCCATCTTCCCCACCAATGTGCTCTTCTTCGGCTCCCAGGACGCCGTGGCAACCGGCGGC
ACACCACGGCAGCCGGCG---------GCACCGCAGCCATCCCAGGGACCGATCGCCGGCGTCGCGGCCGTGGTCGAGGC
GGCGAGAGTAGCGGCCCTCCGGCGGCTGCTCGGCTGCGGCGGCGGGACGCCCCCGCCACCACCACCGCCGCCGCCGCAGG
CAGGCCGCGACCTGGAGATGGGCCCCGCGCAGGCCGGCGGCGAGAGCAGCACGCCGCGGCCGGCGAAACCACAGCCAGGT
TCTTGATTGATGCCT--CCTCCGCCCGCCGCTCCCGCTCCCCTCCGCATCTCCTTGAGCCATTTTGAGG-CACCAAAAAG
GAAGCAAATTGTACATATTTCCTAGTTCCTACAGTGTATGATAGTACGATTAAGGAACTGTATAATCCTGTGAACAAATC
CATGA---------GATACATCTCGGCGATTTGGTGCCGC-AAATCCATGAGATCTG--TGCTGTGCGGCACTGAGAAGA
AGC------ACTGTTAGTTTTGCAGATAAT--------TTTACCACGCAGTAATACTATCAGTAAGCGCT------TTCT
GATGATGATGGCTGTCCATGTCGAGCAGTACTCGAGTGTGCTGTGGAGGCACATGCGCTCATATGGGACACGTAGGCAGA
TGTTGACTAGAGAAGCAACTGGATCATGACGACAACGG---CAGCAACAAATATCCGAGTACACCGTATTT----CGTAT
TTTGTTTTGTTGAGCTGGAGTACACCGTACTTGGCCTCGCTTCCCAGCTACTACACCGGTTCAGCAACAGGCCAAGCGAT
ACCGACTCATTTGAAAAT--------------------------------------------------------------
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>chr5A_700
AACTGTG-------------------------------------------------------------------------
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-----------------------------------------------------------------ATATATATTCATCAA
AAGCTTACATTTCTCTGTTAAAATACTATATAAATAAATAAAAGGCTCACATTTTCTATATAGTTTCTTTATAT-AAAAA
GGCTCACAGAGGAGCGCGGCGACTATGTGCTAGT----------------AGTATAACACCCCTCGCCTGTTCGGCCCAA
ATCCACTTCTCAGACACACACACACACACACACACACAAATCTCTTGCAAGCAAACCCCCCCCAATTCCCAGCCGAGAAC
GCACGGCTGGGGAAGAGAGGGTCGTCGGGAGGAGCAGAAGAAGGCGCGATTTGGGGGGCGAGGACGGATCGATGTCGGTG
ACGGGGACATCCGTGGCGGCGGCGGCGACCATGCTGGCCGCGGCGGCCGCCATCTTCATCACCTTCGTCGTCTGCTTCTA
CCTCTTCCTCTGCGCCAAGCGCTACCGGGGCGCCGCGCCCGCAATCGG---------CGGCGGCG---------------
-----------GGGGAGCGGACGGCAGGGGCCGGGGGCCGCGGTTCGTCTTCGGGGGGCCCTGCCACGGGCGGGGCCTGG
ACGAGACGGCCATCGTGGCGCTGCCGCGCAGGGAGGTCGCCCAGGGGGACCCCGCGGCCGACTGCGCCGTCTGCATCACG
GAGCTCGCCGCCGGGGAGGCCGCGCGCCTGCTGCCGCGGTGCGGCCACTCGTTCCACGTCGAGTGCGTCGACATGTGGCT
CCGCTCGCACTCCACCTGCCCGGTCTGCCGGTGCGCGGTCGCCGACGAGGCGC------------CCACCGTGCAGCCCC
CCGAGGCCGATCCTGAGTCGCCCATCTTCCCCACCAACGTGCTCTTCTTCGGCTCCCAGGACGCCGTGGCAACCGGCGGC
ACGCCGCGGCAGCCGGTG---------CCGCCGCAGCCTTCCCAGGGCCCGATCGCCGGCGTCGCGGCCGTGGTCGAGGC
GGCCAGAGTGGCGGCCCTCCGGCGGCTGCTCGGCTGCGGCGGCGGGACGTCCCCGCCCCCGCCACCACCGCCGCCGCAGG
CAGGCCGCGACCTGGAGATGGGCCCCGCGCAGGCCGGCGGCGAGAGCAGCACGCCGCGGCCGGCGAAACCGCAGCCAGGT
TC----TTGATGCCT--CCTCCGCCCGCCGCTCTT--TCCCCTCCGCATCTCCTTGAGCCATTTTGAGGCCACCAAAAAG
GAAGCAAATTGTACATATTTCCTA-------CAGTGTATGATAGTACGATTGAGGAACTGTATAATCCTGTGAACAAGAT
CTATGGAATGGATGGACACATCTCGGCGATTTCATGCCGCCAAATCCATGAGATCTGAGTGCTGTGCGGCACCGAGAAGA
AGCACTGTTACTGTTAGTTTTGCAGATAATACTTACATTTTACCATGCAGTAATACTACTAGCAGCGCTTTCTGAATTCT
GATGATGATGGCTGTCCATGTCGAGCAGTAGCCGAGTGTACTGTGGAGGCACATGCGCTCATATGGGACATGTAGGCAGA
TGTTGACTAGAGAAGCAGCTGGATCATGACGACGACGACAACAGCAACAAATATCCGAGTAGACCGTATTTCGTACGTAT
TTTGTTTTGTTGAGCTGGAGTACACCGTACTTGGCCTCGCTTCCCAGCTACTCCGTC---TCAGCAACAGGCCAAGCGAT
ACCGACTCATTTGAAAATTGAACTGACCTAATTTTTTCGCCCCAATCAAATCATAAAAAGAATGAGGCCACATACAAAAC
AGCTGCCGGGTTTTACTTTTTGCAACCAGTCATTTTTTCAGCTCTTCCTCTGCCTCCTTGATTGTCCTCAAATTTAACCC
AAATCCGTGCTTTCCTGCTTCAAGTCCCGTTCGCAATTCAGAGTGTATTTCGATCGTAGAGGAAATGGCG-CAGACTCTG
CTCATTTACATAGCTGGAGGAGATTCTTGCGTTCTCTCTCTATCGGGTCCGTCCTGAACAAGGGGAATTTGACCGCCTTG
CATCCTCGCTTGCGCACACCCCAGGTCCATAGCTTATCCATCGTTACTGGTGATCCTCATCCATCCTATCTAAAGGATTT
AAAAGACATTACAGAATTA-------------------------------------------------------------
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>chr2D_1001
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-----------------------------------------------------------------------ATGGCGGTG
ACGGCGACCACGGCCGCGGCGGCGGCCGCCATGCTGGCGGCGGTGATGGCCATCTTCCTCTCCTTCGTGCTCTGCTTCTA
CATATTCCTCTGCGCCAAGAGGTCCCGCGGAGGGGCGCCGCCGCCGCCGGGGAGCGGCGTGATGGCGCACCTGCGCTTCT
TGTTCTGCGGCGGGGACGGGAGGGCCGGAGCGGGGGACGGCGTCGCCCCCTGG--------TTCTACGACGGGGGCCTGG
ACGACGCGTCCATGGCGTCGCTGCCCCGCCGGGAGGTGGCCAAGGGGGAGGCCATG---GACTGCGCGGTCTGCATCACG
GAGCTCGCCGCCGGGGAGACGGCGCGCGTGCTGCCCCGCTGCGGCCACGGCTTCCACGTGGACTGCGTCGACATGTGGCT
CAAGTCGCACTCCACCTGCCCGCTCTGCCGCTGCCCGGCCGTCGACGCGCCGCCGCTGCCGCCCGCGCCCGTCCAGGCGC
CCGAGGCCGACCAGGAGTCGCCCAACTTCCCCACCAACGTGCTCTTCTTCGGCTCCCAGGACGACGTCAGCACCGGCCGC
GCGCAGCCGCAGC-------------------------------------------------------------------
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>chr2A_1001
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-----------------------------------------------------------------------ATGGCGGTG
ACGGCGACGACGGCCGCGGCCGCGGCCACCATGCTGGCGGCGGTGATGGCCATCTTCCTCTCCTTCGTGCTCTGCTTCTA
CATATTCCTCTGCGCCAAGAGGTCCCGGGGAGGGGCGCCGCCGCCGCCGGGGAGCGGCGTCATGGCGCACCTGCGCTTCC
TGTTCTGCGGCGGGGACGGGAGGGCCGGGGCGGGGGACGGCGTCGCCCCCTGG--------TTCTACGACGGGGGCCTCG
ACGACGCGTCCATGGCGTCGCTGCCCCGCCGGGAGGTGGCCAAGGGCGAGGCCATG---GACTGCGCGGTCTGCATCACG
GAGCTCGCCGCCGGGGAGACGGCGCGCGTGCTGCCCCGCTGCGGCCACGGCTTCCACGTCGACTGCGTCGACATGTGGCT
CAAGTCGCACTCCACCTGCCCGCTCTGCCGCTGCCCCGCCGTCGACGCGCCGCCGCTGCCGCCCGCGCCCGTCCAGGCGC
CCGAGGCCGACCAGGAGTCGCCCAACTTCCCCACCAACGTGCTCTTCTTCGGCTCCCAGGACGACGTCAGCACCGGCCGC
GCGCAGCCGCAGC-------------------------------------------------------------------
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>SNPs
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS-------S-S----------S----------------------S-S-S---------------
------------------------S----------SS------S------------------S-----------------
----------------------------SSSS-SSSSSS-----------------------------------------
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-----------S-------------------------------S------------------------------------
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--------------------------------------------------------------S-----------------
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-----------------S--------------------------------------------------------------
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--------------------------------------------------------------S-----------------
------------------SSSSSSSSS-----S-----S-----------------------------------------
--------------------------------------------S----------------------------------S
------S---------------------S-------S-------------------------------------------
-----------SSSSSS--------------S------------------------------------------------
-------------------S------------------------------------------------------------
-------S------------------------------------------------------------------------
---------------------------S-------------------------S--S--------------------SS-
-----------------------------S--------------------------------------------------
----------------------------------S---------------------------------------------
---------------------------------------------S---------------------------------S
-------------------------S------------------S-------------------------------S---
--S----S-------S-------------S--------------------S---------------------S-------
--S----------------------------------------------------S------------SSS---------
--SS----SS-----S------S---S---------------------------SS--------------S---------
------S------S--------S-----------S---S-SSSS-SS-S-------------S---------S-------
S-----------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS
>forward_609
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-----------------------------ACGCCATGTTACGTCGAGAA-------------------------------
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>reverse_2190
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-----------------------------GCTCGAGTGTACTGTGGAGG-------------------------------
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