AutoCloner

Multiple sequence alignment - TraesCS5D01G395200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G395200	chr5D	100.000	3339	0	0	1	3339	462983515	462986853	0.000000e+00	6167.0
1	TraesCS5D01G395200	chr5D	91.580	772	63	2	1512	2282	462885558	462886328	0.000000e+00	1064.0
2	TraesCS5D01G395200	chr5D	85.851	523	55	11	1	507	429898619	429899138	3.790000e-149	538.0
3	TraesCS5D01G395200	chr5D	86.026	458	40	11	1086	1519	462836733	462837190	1.400000e-128	470.0
4	TraesCS5D01G395200	chr5D	90.291	103	9	1	988	1090	462827906	462828007	2.090000e-27	134.0
5	TraesCS5D01G395200	chr5B	94.361	1401	48	8	1024	2399	569544450	569545844	0.000000e+00	2121.0
6	TraesCS5D01G395200	chr5B	88.389	689	56	11	1	670	569538875	569539558	0.000000e+00	808.0
7	TraesCS5D01G395200	chr5B	83.057	785	48	25	2441	3176	569545847	569546595	4.700000e-178	634.0
8	TraesCS5D01G395200	chr5B	90.028	351	12	9	662	994	569544050	569544395	1.840000e-117	433.0
9	TraesCS5D01G395200	chr5B	96.689	151	5	0	3189	3339	569546673	569546823	5.530000e-63	252.0
10	TraesCS5D01G395200	chr5B	75.158	475	76	24	1	461	696286446	696286892	5.690000e-43	185.0
11	TraesCS5D01G395200	chr5B	90.667	75	7	0	388	462	63869665	63869591	2.120000e-17	100.0
12	TraesCS5D01G395200	chr5B	100.000	31	0	0	3183	3213	569546633	569546663	1.290000e-04	58.4
13	TraesCS5D01G395200	chr5A	90.640	1624	95	20	1099	2701	582958200	582959787	0.000000e+00	2104.0
14	TraesCS5D01G395200	chr5A	84.038	520	60	12	3	507	343459654	343459143	2.330000e-131	479.0
15	TraesCS5D01G395200	chr5A	89.520	229	22	2	766	994	582957456	582957682	4.210000e-74	289.0
16	TraesCS5D01G395200	chr5A	92.763	152	5	5	958	1108	582957690	582957836	7.260000e-52	215.0
17	TraesCS5D01G395200	chr5A	85.987	157	20	1	3183	3339	582961221	582961375	2.060000e-37	167.0
18	TraesCS5D01G395200	chr5A	85.714	84	8	3	2866	2949	582960392	582960471	5.940000e-13	86.1
19	TraesCS5D01G395200	chr4B	84.800	500	44	17	2	470	608637321	608637819	1.080000e-129	473.0
20	TraesCS5D01G395200	chr4B	82.593	540	59	14	1	507	488139679	488139142	8.500000e-121	444.0
21	TraesCS5D01G395200	chr3B	85.319	470	52	8	1	454	181499674	181500142	1.400000e-128	470.0
22	TraesCS5D01G395200	chr3B	78.195	532	78	23	3	507	705977016	705977536	4.190000e-79	305.0
23	TraesCS5D01G395200	chr1B	83.015	524	59	14	1	507	570705397	570704887	6.570000e-122	448.0
24	TraesCS5D01G395200	chr3D	82.466	519	71	14	1	511	545429015	545429521	1.420000e-118	436.0
25	TraesCS5D01G395200	chr3D	78.351	388	48	21	2	376	582075405	582075041	5.610000e-53	219.0
26	TraesCS5D01G395200	chr2D	82.012	517	62	12	3	504	42556647	42557147	8.620000e-111	411.0
27	TraesCS5D01G395200	chr2D	81.356	531	53	12	1	507	607081401	607081909	1.120000e-104	390.0
28	TraesCS5D01G395200	chr7A	81.644	523	56	26	1	488	536159067	536158550	6.710000e-107	398.0
29	TraesCS5D01G395200	chrUn	79.406	471	49	22	21	463	86833447	86832997	4.210000e-74	289.0
30	TraesCS5D01G395200	chr2B	78.772	391	41	22	86	459	87499238	87499603	1.210000e-54	224.0
31	TraesCS5D01G395200	chr4A	75.306	409	67	23	42	424	26876664	26876264	7.410000e-37	165.0
32	TraesCS5D01G395200	chr7D	89.167	120	12	1	388	507	398876215	398876333	7.460000e-32	148.0
33	TraesCS5D01G395200	chr1D	84.426	122	19	0	397	518	196080034	196079913	1.630000e-23	121.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G395200	chr5D	462983515	462986853	3338	False	6167.00	6167	100.0000	1	3339	1	chr5D.!!$F5	3338
1	TraesCS5D01G395200	chr5D	462885558	462886328	770	False	1064.00	1064	91.5800	1512	2282	1	chr5D.!!$F4	770
2	TraesCS5D01G395200	chr5D	429898619	429899138	519	False	538.00	538	85.8510	1	507	1	chr5D.!!$F1	506
3	TraesCS5D01G395200	chr5B	569538875	569539558	683	False	808.00	808	88.3890	1	670	1	chr5B.!!$F1	669
4	TraesCS5D01G395200	chr5B	569544050	569546823	2773	False	699.68	2121	92.8270	662	3339	5	chr5B.!!$F3	2677
5	TraesCS5D01G395200	chr5A	582957456	582961375	3919	False	572.22	2104	88.9248	766	3339	5	chr5A.!!$F1	2573
6	TraesCS5D01G395200	chr5A	343459143	343459654	511	True	479.00	479	84.0380	3	507	1	chr5A.!!$R1	504
7	TraesCS5D01G395200	chr4B	488139142	488139679	537	True	444.00	444	82.5930	1	507	1	chr4B.!!$R1	506
8	TraesCS5D01G395200	chr3B	705977016	705977536	520	False	305.00	305	78.1950	3	507	1	chr3B.!!$F2	504
9	TraesCS5D01G395200	chr1B	570704887	570705397	510	True	448.00	448	83.0150	1	507	1	chr1B.!!$R1	506
10	TraesCS5D01G395200	chr3D	545429015	545429521	506	False	436.00	436	82.4660	1	511	1	chr3D.!!$F1	510
11	TraesCS5D01G395200	chr2D	42556647	42557147	500	False	411.00	411	82.0120	3	504	1	chr2D.!!$F1	501
12	TraesCS5D01G395200	chr2D	607081401	607081909	508	False	390.00	390	81.3560	1	507	1	chr2D.!!$F2	506
13	TraesCS5D01G395200	chr7A	536158550	536159067	517	True	398.00	398	81.6440	1	488	1	chr7A.!!$R1	487

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
538	624	0.250338	AGAAAGACGGTTGTGAGGCC	60.25	55.0	0.0	0.0	0.0	5.19	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2527	3084	1.209621	TCCCCTGAAATTCTACCGGG	58.79	55.0	6.32	0.0	0.0	5.73	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
62	63	3.673597	AGGAGCCACGGGAGGAGA	61.674	66.667	0.00	0.00	0.00	3.71
188	229	1.187087	GGACGGTGACTCCTGAAGAT	58.813	55.000	0.00	0.00	0.00	2.40
224	270	3.044286	GCGACGAGCCTTTATCTACTTC	58.956	50.000	0.00	0.00	40.81	3.01
228	274	5.805994	CGACGAGCCTTTATCTACTTCTTTT	59.194	40.000	0.00	0.00	0.00	2.27
229	275	6.971184	CGACGAGCCTTTATCTACTTCTTTTA	59.029	38.462	0.00	0.00	0.00	1.52
230	276	7.648510	CGACGAGCCTTTATCTACTTCTTTTAT	59.351	37.037	0.00	0.00	0.00	1.40
231	277	8.649973	ACGAGCCTTTATCTACTTCTTTTATG	57.350	34.615	0.00	0.00	0.00	1.90
232	278	8.258708	ACGAGCCTTTATCTACTTCTTTTATGT	58.741	33.333	0.00	0.00	0.00	2.29
233	279	8.756864	CGAGCCTTTATCTACTTCTTTTATGTC	58.243	37.037	0.00	0.00	0.00	3.06
381	461	2.922950	CGGACGGTTTGGGACGAGA	61.923	63.158	0.00	0.00	0.00	4.04
466	552	1.849829	CCCAAACGAACGAAAAACAGC	59.150	47.619	0.14	0.00	0.00	4.40
528	614	0.462759	GAGGCCATCCAGAAAGACGG	60.463	60.000	5.01	0.00	33.74	4.79
538	624	0.250338	AGAAAGACGGTTGTGAGGCC	60.250	55.000	0.00	0.00	0.00	5.19
619	705	3.632604	TCGAATACTCGCTCTTCCAATCT	59.367	43.478	0.00	0.00	45.04	2.40
629	715	3.680196	GCTCTTCCAATCTGTCCCAGTAC	60.680	52.174	0.00	0.00	32.61	2.73
635	721	2.891307	ATCTGTCCCAGTACCCGGGG	62.891	65.000	27.92	12.73	46.67	5.73
695	783	7.500892	TGCCAAGAGATCAGTAAAAACAACTTA	59.499	33.333	0.00	0.00	0.00	2.24
723	811	5.389411	GCAACAGAAACAAACAAACTGAACC	60.389	40.000	0.00	0.00	33.53	3.62
827	928	1.899142	TGATTAAAAGGGGCAACAGGC	59.101	47.619	0.00	0.00	43.74	4.85
939	1043	2.888414	TCCACTTCAAATTTCGAACCCC	59.112	45.455	0.00	0.00	0.00	4.95
941	1045	3.305335	CCACTTCAAATTTCGAACCCCTG	60.305	47.826	0.00	0.00	0.00	4.45
943	1047	1.253100	TCAAATTTCGAACCCCTGCC	58.747	50.000	0.00	0.00	0.00	4.85
989	1094	3.996124	CGCCGCCTCCCCTCATAG	61.996	72.222	0.00	0.00	0.00	2.23
1012	1157	1.008424	CGATCCATGGACGAGACCG	60.008	63.158	18.99	10.01	42.50	4.79
1748	2284	3.959991	GACTCCAGCAGGTTCGCCC	62.960	68.421	0.00	0.00	38.27	6.13
1766	2302	0.861837	CCTTCTTGCGTGTCAGTCAC	59.138	55.000	0.00	0.00	43.03	3.67
1796	2332	0.886490	CTTGGCTGCAGAGACGGTTT	60.886	55.000	20.43	0.00	0.00	3.27
1815	2351	6.416750	ACGGTTTTTCATTGACGAATTCTTTC	59.583	34.615	3.52	0.59	0.00	2.62
1816	2352	6.129194	CGGTTTTTCATTGACGAATTCTTTCC	60.129	38.462	3.52	0.00	0.00	3.13
1820	2356	5.627499	TCATTGACGAATTCTTTCCCTTG	57.373	39.130	3.52	0.00	0.00	3.61
1991	2531	3.066342	TCACGGAGGTAATCGACAGAATC	59.934	47.826	0.00	0.00	0.00	2.52
2004	2544	6.078202	TCGACAGAATCTCCACTATCAATC	57.922	41.667	0.00	0.00	0.00	2.67
2227	2781	3.075005	GAGGGGACACGGCTGCTA	61.075	66.667	0.00	0.00	0.00	3.49
2310	2867	0.250295	CTGTCCAAGAAGCGGTTCCA	60.250	55.000	22.91	12.52	32.48	3.53
2405	2962	4.782691	TCATTTCCTGTGAGATTGGTAGGA	59.217	41.667	0.00	0.00	35.84	2.94
2415	2972	4.283467	TGAGATTGGTAGGAATATCCCGTG	59.717	45.833	0.00	0.00	37.19	4.94
2421	2978	4.472108	TGGTAGGAATATCCCGTGTTCTTT	59.528	41.667	0.00	0.00	37.19	2.52
2437	2994	5.971202	GTGTTCTTTTGGTTGTAGTGATGTG	59.029	40.000	0.00	0.00	0.00	3.21
2439	2996	6.824196	TGTTCTTTTGGTTGTAGTGATGTGTA	59.176	34.615	0.00	0.00	0.00	2.90
2449	3006	4.280929	TGTAGTGATGTGTACTGTCTGCTT	59.719	41.667	0.00	0.00	0.00	3.91
2462	3019	3.673902	TGTCTGCTTTTTCATCGGATCA	58.326	40.909	0.00	0.00	0.00	2.92
2521	3078	7.195646	ACTATGAATGCATAATGTTTGGAACG	58.804	34.615	0.00	0.00	36.60	3.95
2527	3084	5.453648	TGCATAATGTTTGGAACGTACAAC	58.546	37.500	5.22	0.00	0.00	3.32
2558	3128	3.749665	TTCAGGGGAATTTTGCAGTTG	57.250	42.857	0.00	0.00	0.00	3.16
2569	3139	0.106335	TTGCAGTTGGTTGGCATTGG	59.894	50.000	0.00	0.00	37.39	3.16
2577	3147	1.327303	GGTTGGCATTGGTCAGACAA	58.673	50.000	2.17	0.00	34.41	3.18
2578	3148	1.686052	GGTTGGCATTGGTCAGACAAA	59.314	47.619	2.17	0.00	33.48	2.83
2582	3152	2.622942	TGGCATTGGTCAGACAAACTTC	59.377	45.455	2.17	0.00	33.48	3.01
2597	3167	3.982576	AACTTCGGTCATGTTTGGAAC	57.017	42.857	0.00	0.00	0.00	3.62
2633	3204	5.007724	GGAACACTAGAACAGAAAACCACAG	59.992	44.000	0.00	0.00	0.00	3.66
2634	3205	5.353394	ACACTAGAACAGAAAACCACAGA	57.647	39.130	0.00	0.00	0.00	3.41
2635	3206	5.930135	ACACTAGAACAGAAAACCACAGAT	58.070	37.500	0.00	0.00	0.00	2.90
2636	3207	7.062749	ACACTAGAACAGAAAACCACAGATA	57.937	36.000	0.00	0.00	0.00	1.98
2637	3208	7.680730	ACACTAGAACAGAAAACCACAGATAT	58.319	34.615	0.00	0.00	0.00	1.63
2638	3209	8.812972	ACACTAGAACAGAAAACCACAGATATA	58.187	33.333	0.00	0.00	0.00	0.86
2639	3210	9.088512	CACTAGAACAGAAAACCACAGATATAC	57.911	37.037	0.00	0.00	0.00	1.47
2640	3211	8.812972	ACTAGAACAGAAAACCACAGATATACA	58.187	33.333	0.00	0.00	0.00	2.29
2641	3212	9.307121	CTAGAACAGAAAACCACAGATATACAG	57.693	37.037	0.00	0.00	0.00	2.74
2643	3214	5.186198	ACAGAAAACCACAGATATACAGGC	58.814	41.667	0.00	0.00	0.00	4.85
2644	3215	5.185454	CAGAAAACCACAGATATACAGGCA	58.815	41.667	0.00	0.00	0.00	4.75
2645	3216	5.824624	CAGAAAACCACAGATATACAGGCAT	59.175	40.000	0.00	0.00	0.00	4.40
2646	3217	5.824624	AGAAAACCACAGATATACAGGCATG	59.175	40.000	0.00	0.00	0.00	4.06
2647	3218	3.777106	ACCACAGATATACAGGCATGG	57.223	47.619	2.31	0.00	0.00	3.66
2662	3236	2.238898	GGCATGGTACCCAAGAACTACT	59.761	50.000	10.07	0.00	36.95	2.57
2667	3241	4.964593	TGGTACCCAAGAACTACTGTTTC	58.035	43.478	10.07	0.00	36.39	2.78
2734	3828	6.522625	TTTCATCTGAAACAACACCTTGAA	57.477	33.333	1.28	0.00	38.94	2.69
2736	3830	4.580167	TCATCTGAAACAACACCTTGAAGG	59.420	41.667	10.24	10.24	42.49	3.46
2815	3909	6.784473	AGGAAAGAAAATGTGAAAAGGAGGAT	59.216	34.615	0.00	0.00	0.00	3.24
2857	3965	7.627585	TCAGAATGAAAAGAAGAATTTTGCG	57.372	32.000	0.00	0.00	45.97	4.85
2864	3972	5.372547	AAAGAAGAATTTTGCGAGTACCC	57.627	39.130	0.00	0.00	0.00	3.69
2949	4057	5.549228	TCCTATGATCCAAATGCATCTAGGT	59.451	40.000	0.00	0.00	30.13	3.08
2950	4058	5.879223	CCTATGATCCAAATGCATCTAGGTC	59.121	44.000	0.00	0.00	0.00	3.85
2951	4059	5.579753	ATGATCCAAATGCATCTAGGTCT	57.420	39.130	0.00	0.00	0.00	3.85
2952	4060	6.692849	ATGATCCAAATGCATCTAGGTCTA	57.307	37.500	0.00	0.00	0.00	2.59
2953	4061	6.106648	TGATCCAAATGCATCTAGGTCTAG	57.893	41.667	0.00	0.00	34.56	2.43
2954	4062	4.963318	TCCAAATGCATCTAGGTCTAGG	57.037	45.455	0.00	0.00	34.06	3.02
3016	4174	1.443802	AACTCTTCGCTGCCTAAAGC	58.556	50.000	0.00	0.00	44.14	3.51
3065	4639	3.003480	AGCAAATAAACGACAGGAGAGC	58.997	45.455	0.00	0.00	0.00	4.09
3179	4754	4.601406	ACAAATGCAGGAAAGGGGTATA	57.399	40.909	0.00	0.00	0.00	1.47
3213	4843	3.132925	CTGTTCCAGGTTGCCAAATTTG	58.867	45.455	11.40	11.40	0.00	2.32
3311	4975	6.658816	ACACAAATTACCAGCATAGTCATCAA	59.341	34.615	0.00	0.00	0.00	2.57

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
125	165	3.142838	GACGTAGGGCGGTGGCTA	61.143	66.667	0.00	0.00	46.52	3.93
485	571	2.353803	GCCAACTTCTACACACGATCCT	60.354	50.000	0.00	0.00	0.00	3.24
518	604	0.868406	GCCTCACAACCGTCTTTCTG	59.132	55.000	0.00	0.00	0.00	3.02
528	614	1.845809	CTCACTTGCGGCCTCACAAC	61.846	60.000	0.00	0.00	0.00	3.32
538	624	0.596600	ACCACACGTACTCACTTGCG	60.597	55.000	0.00	0.00	0.00	4.85
541	627	1.405872	TCCACCACACGTACTCACTT	58.594	50.000	0.00	0.00	0.00	3.16
580	666	1.448540	GATCCTATCCATGCGCCCG	60.449	63.158	4.18	0.00	0.00	6.13
635	721	6.470877	TCAATAGAAAATTAATTGGCGAACGC	59.529	34.615	10.81	10.81	41.06	4.84
695	783	5.177327	CAGTTTGTTTGTTTCTGTTGCAGTT	59.823	36.000	0.00	0.00	32.61	3.16
723	811	6.092122	TCAGTTTATTTCATCCGTAAGCACAG	59.908	38.462	0.00	0.00	0.00	3.66
768	869	0.869454	GAAGAGCAGACGCATCGAGG	60.869	60.000	0.00	0.00	42.27	4.63
827	928	4.514577	CGGCGCTGACAGGTAGGG	62.515	72.222	11.90	0.00	0.00	3.53
852	953	1.602377	GACCCGAGTTTCCTTGTGTTG	59.398	52.381	0.00	0.00	0.00	3.33
939	1043	2.837291	CGGAGAGGGAGAGGGCAG	60.837	72.222	0.00	0.00	0.00	4.85
989	1094	4.626081	CGTCCATGGATCGGGGGC	62.626	72.222	19.62	1.54	0.00	5.80
1188	1712	3.048602	CAGCCGGGGTAGTATCCG	58.951	66.667	2.18	7.64	45.29	4.18
1191	1715	3.231736	CGGCAGCCGGGGTAGTAT	61.232	66.667	27.32	0.00	44.15	2.12
1488	2015	1.731969	AAGAACCGTCAGCGCGTAC	60.732	57.895	8.43	3.02	36.67	3.67
1748	2284	7.957550	AGTAAGGTGACTGACACGCAAGAAG	62.958	48.000	4.31	0.00	45.20	2.85
1766	2302	2.681848	CTGCAGCCAAGATTCAGTAAGG	59.318	50.000	0.00	0.00	0.00	2.69
1775	2311	1.220206	CCGTCTCTGCAGCCAAGAT	59.780	57.895	9.47	0.00	0.00	2.40
1796	2332	6.446318	CAAGGGAAAGAATTCGTCAATGAAA	58.554	36.000	12.47	0.00	36.36	2.69
1820	2356	4.110482	GGAACAAATGCTGATCATTCTGC	58.890	43.478	0.00	0.00	44.23	4.26
1991	2531	6.595682	AGTAATGTTGGGATTGATAGTGGAG	58.404	40.000	0.00	0.00	0.00	3.86
2004	2544	2.682856	CGGGTGATGAAGTAATGTTGGG	59.317	50.000	0.00	0.00	0.00	4.12
2254	2808	2.464459	CGCCATTTCCGAGCACCTC	61.464	63.158	0.00	0.00	0.00	3.85
2399	2956	4.684484	AAGAACACGGGATATTCCTACC	57.316	45.455	0.00	0.00	36.57	3.18
2405	2962	4.830600	ACAACCAAAAGAACACGGGATATT	59.169	37.500	0.00	0.00	0.00	1.28
2415	2972	6.131544	ACACATCACTACAACCAAAAGAAC	57.868	37.500	0.00	0.00	0.00	3.01
2421	2978	5.069914	AGACAGTACACATCACTACAACCAA	59.930	40.000	0.00	0.00	0.00	3.67
2437	2994	3.994392	TCCGATGAAAAAGCAGACAGTAC	59.006	43.478	0.00	0.00	0.00	2.73
2439	2996	3.126001	TCCGATGAAAAAGCAGACAGT	57.874	42.857	0.00	0.00	0.00	3.55
2449	3006	2.672874	CAACGAGCTGATCCGATGAAAA	59.327	45.455	0.00	0.00	31.58	2.29
2462	3019	1.550524	TCAGCCACTAATCAACGAGCT	59.449	47.619	0.00	0.00	0.00	4.09
2521	3078	3.937079	CCTGAAATTCTACCGGGTTGTAC	59.063	47.826	4.31	0.00	0.00	2.90
2527	3084	1.209621	TCCCCTGAAATTCTACCGGG	58.790	55.000	6.32	0.00	0.00	5.73
2558	3128	1.327303	TTGTCTGACCAATGCCAACC	58.673	50.000	5.17	0.00	0.00	3.77
2569	3139	3.131396	ACATGACCGAAGTTTGTCTGAC	58.869	45.455	0.00	0.00	32.67	3.51
2577	3147	3.283751	TGTTCCAAACATGACCGAAGTT	58.716	40.909	0.00	0.00	36.25	2.66
2578	3148	2.925724	TGTTCCAAACATGACCGAAGT	58.074	42.857	0.00	0.00	36.25	3.01
2597	3167	7.331026	TGTTCTAGTGTTCCTGAATTCCTATG	58.669	38.462	2.27	0.00	0.00	2.23
2609	3179	4.879545	TGTGGTTTTCTGTTCTAGTGTTCC	59.120	41.667	0.00	0.00	0.00	3.62
2646	3217	4.041321	AGGAAACAGTAGTTCTTGGGTACC	59.959	45.833	2.17	2.17	44.03	3.34
2647	3218	5.224821	AGGAAACAGTAGTTCTTGGGTAC	57.775	43.478	0.00	0.00	36.84	3.34
2662	3236	5.396213	CCAACAAGGATTTTGGAAGGAAACA	60.396	40.000	0.00	0.00	44.51	2.83
2734	3828	4.446371	CATTCCTTCGATCTGTAAAGCCT	58.554	43.478	0.00	0.00	0.00	4.58
2736	3830	4.442706	TCCATTCCTTCGATCTGTAAAGC	58.557	43.478	0.00	0.00	0.00	3.51
2809	3903	4.133078	CCACTTATGCTTCAGAATCCTCC	58.867	47.826	0.00	0.00	0.00	4.30
2815	3909	5.227569	TCTGAACCACTTATGCTTCAGAA	57.772	39.130	11.01	0.00	43.52	3.02
2834	3942	7.380602	ACTCGCAAAATTCTTCTTTTCATTCTG	59.619	33.333	0.00	0.00	0.00	3.02
2857	3965	3.589988	CCATCATTCGCATAGGGTACTC	58.410	50.000	0.00	0.00	0.00	2.59
2864	3972	2.216046	ACACTGCCATCATTCGCATAG	58.784	47.619	0.00	0.00	33.78	2.23
3016	4174	7.218963	GCGCTGGAGATTTAAGATTTTTGTAAG	59.781	37.037	0.00	0.00	0.00	2.34
3179	4754	1.294068	TGGAACAGGGGAGGCTATACT	59.706	52.381	0.00	0.00	0.00	2.12
3213	4843	3.096791	GCAACTGCGAGATGGAGC	58.903	61.111	0.00	0.00	40.21	4.70
3257	4921	5.754890	TCTGTGATTTGTCGATATGATGGTG	59.245	40.000	0.00	0.00	0.00	4.17
3266	4930	7.433708	TGTGTTTATTCTGTGATTTGTCGAT	57.566	32.000	0.00	0.00	0.00	3.59
3311	4975	9.088512	GACTTTAATCGTACATTCAGAGTTCAT	57.911	33.333	0.00	0.00	0.00	2.57

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.