Multiple sequence alignment - TraesCS5D01G393000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G393000 chr5D 100.000 4810 0 0 1 4810 461210065 461214874 0.000000e+00 8883.0
1 TraesCS5D01G393000 chr5D 95.000 60 1 1 1428 1487 61066477 61066420 5.130000e-15 93.5
2 TraesCS5D01G393000 chr5D 92.063 63 3 1 1427 1489 273117944 273117884 2.380000e-13 87.9
3 TraesCS5D01G393000 chr5A 88.479 2413 182 49 1487 3827 581299288 581301676 0.000000e+00 2828.0
4 TraesCS5D01G393000 chr5A 90.892 527 27 2 848 1373 581298758 581299264 0.000000e+00 688.0
5 TraesCS5D01G393000 chr5A 81.486 875 115 33 1 859 581296781 581297624 0.000000e+00 675.0
6 TraesCS5D01G393000 chr5A 93.947 413 18 4 4400 4810 581301845 581302252 6.840000e-173 617.0
7 TraesCS5D01G393000 chr5A 96.491 57 2 0 4082 4138 581301673 581301729 1.430000e-15 95.3
8 TraesCS5D01G393000 chr5B 87.831 2342 197 43 1545 3827 567152495 567154807 0.000000e+00 2665.0
9 TraesCS5D01G393000 chr5B 93.377 604 37 3 1 602 567151096 567151698 0.000000e+00 891.0
10 TraesCS5D01G393000 chr5B 94.885 567 24 3 4247 4810 567154859 567155423 0.000000e+00 881.0
11 TraesCS5D01G393000 chr5B 86.967 798 69 17 647 1425 567151699 567152480 0.000000e+00 865.0
12 TraesCS5D01G393000 chr5B 87.059 170 19 2 1 167 578720414 578720245 6.360000e-44 189.0
13 TraesCS5D01G393000 chr5B 91.892 111 9 0 4137 4247 661211532 661211422 6.450000e-34 156.0
14 TraesCS5D01G393000 chr5B 96.491 57 2 0 4082 4138 567154804 567154860 1.430000e-15 95.3
15 TraesCS5D01G393000 chr2B 91.760 267 20 2 3824 4088 166592116 166592382 2.110000e-98 370.0
16 TraesCS5D01G393000 chr2B 91.288 264 19 4 3824 4084 206287180 206286918 1.650000e-94 357.0
17 TraesCS5D01G393000 chr2B 92.188 64 0 3 1426 1489 668383044 668383102 8.580000e-13 86.1
18 TraesCS5D01G393000 chr7B 91.698 265 21 1 3821 4084 598296143 598296407 2.740000e-97 366.0
19 TraesCS5D01G393000 chr7B 91.255 263 21 2 3824 4084 436122545 436122807 1.650000e-94 357.0
20 TraesCS5D01G393000 chr7B 91.221 262 21 2 3825 4084 627876480 627876219 5.920000e-94 355.0
21 TraesCS5D01G393000 chr7B 80.180 222 31 7 560 774 212782310 212782525 2.320000e-33 154.0
22 TraesCS5D01G393000 chr7B 90.000 110 11 0 4135 4244 504473103 504473212 5.020000e-30 143.0
23 TraesCS5D01G393000 chr7B 85.393 89 4 7 1404 1487 165708207 165708291 3.080000e-12 84.2
24 TraesCS5D01G393000 chr1B 91.321 265 22 1 3823 4086 538625375 538625639 1.270000e-95 361.0
25 TraesCS5D01G393000 chr1B 87.135 171 18 4 1 169 676310347 676310179 1.770000e-44 191.0
26 TraesCS5D01G393000 chr1B 84.507 71 8 1 560 630 171152361 171152294 3.110000e-07 67.6
27 TraesCS5D01G393000 chr6B 90.406 271 24 2 3824 4092 571453867 571454137 5.920000e-94 355.0
28 TraesCS5D01G393000 chr6B 87.135 171 17 5 1 168 182340575 182340743 6.360000e-44 189.0
29 TraesCS5D01G393000 chr1D 91.221 262 22 1 3825 4085 76970952 76971213 5.920000e-94 355.0
30 TraesCS5D01G393000 chr1D 85.784 204 20 7 362 559 96699285 96699085 1.750000e-49 207.0
31 TraesCS5D01G393000 chr1D 82.432 222 26 6 560 774 383169394 383169609 1.060000e-41 182.0
32 TraesCS5D01G393000 chr2D 90.335 269 25 1 3819 4086 112870944 112871212 7.660000e-93 351.0
33 TraesCS5D01G393000 chr2D 86.982 169 18 3 1 167 8621569 8621403 2.290000e-43 187.0
34 TraesCS5D01G393000 chr2D 86.982 169 18 3 1 168 549939588 549939753 2.290000e-43 187.0
35 TraesCS5D01G393000 chr6D 87.647 170 18 3 1 168 259285892 259286060 1.370000e-45 195.0
36 TraesCS5D01G393000 chr7A 87.574 169 16 4 1 168 681751966 681752130 1.770000e-44 191.0
37 TraesCS5D01G393000 chr7A 100.000 29 0 0 2996 3024 450094690 450094662 2.000000e-03 54.7
38 TraesCS5D01G393000 chr4B 87.135 171 16 5 1 169 290909538 290909372 6.360000e-44 189.0
39 TraesCS5D01G393000 chr4B 90.090 111 11 0 4137 4247 27978386 27978276 1.400000e-30 145.0
40 TraesCS5D01G393000 chr7D 82.927 205 23 7 362 559 472897604 472897803 1.780000e-39 174.0
41 TraesCS5D01G393000 chr7D 93.443 61 0 1 1428 1488 20064755 20064699 2.380000e-13 87.9
42 TraesCS5D01G393000 chr4A 81.503 173 21 8 567 733 595215340 595215173 1.090000e-26 132.0
43 TraesCS5D01G393000 chr3D 88.542 96 11 0 364 459 596939085 596939180 3.040000e-22 117.0
44 TraesCS5D01G393000 chr6A 93.651 63 2 1 1425 1487 454653999 454654059 5.130000e-15 93.5
45 TraesCS5D01G393000 chr6A 81.905 105 13 3 645 745 65793289 65793187 3.080000e-12 84.2
46 TraesCS5D01G393000 chr3A 92.424 66 3 1 1428 1493 466807007 466806944 5.130000e-15 93.5
47 TraesCS5D01G393000 chr4D 91.935 62 5 0 1428 1489 472879918 472879857 2.380000e-13 87.9
48 TraesCS5D01G393000 chr4D 90.323 62 6 0 1425 1486 6594598 6594659 1.110000e-11 82.4
49 TraesCS5D01G393000 chr3B 87.500 56 7 0 560 615 41476363 41476308 1.120000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G393000 chr5D 461210065 461214874 4809 False 8883.00 8883 100.0000 1 4810 1 chr5D.!!$F1 4809
1 TraesCS5D01G393000 chr5A 581296781 581302252 5471 False 980.66 2828 90.2590 1 4810 5 chr5A.!!$F1 4809
2 TraesCS5D01G393000 chr5B 567151096 567155423 4327 False 1079.46 2665 91.9102 1 4810 5 chr5B.!!$F1 4809

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
777 797 0.246757 CACGCGTCGCACTTATCAAC 60.247 55.0 18.75 0.0 0.00 3.18 F
1265 2444 0.407918 TGGGGTTGGGATTTCTGGTC 59.592 55.0 0.00 0.0 0.00 4.02 F
1924 3146 0.037590 AGCACCGCCAGTCCATTTAA 59.962 50.0 0.00 0.0 0.00 1.52 F
3340 4593 0.460987 AGTAGCAAGTCGGATGCAGC 60.461 55.0 6.38 0.0 46.22 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1732 2934 0.035152 TGCTTTGATCAGCCACGGAT 60.035 50.0 4.64 0.0 39.25 4.18 R
3251 4504 0.395586 TGTTTTCACTGGCAGCCTGT 60.396 50.0 18.00 18.0 36.11 4.00 R
3448 4701 0.107017 CATTGGGGGCTGACTACCTG 60.107 60.0 0.00 0.0 0.00 4.00 R
4230 5509 0.037605 CGCTTCCTGGTTCCTACGTT 60.038 55.0 0.00 0.0 0.00 3.99 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
162 163 7.982761 TTAAGTAATAAAGCGTCCCTTTTGA 57.017 32.000 0.00 0.00 40.85 2.69
186 190 5.997384 AAAAGGTCGTCTATAAGTGTCCT 57.003 39.130 0.00 0.00 0.00 3.85
217 221 9.184062 GGGGTTTGTAATTTAAGTTTTTACTCG 57.816 33.333 0.00 0.00 0.00 4.18
240 244 6.187125 GGTTTTTCTCTAATTAACCGGACC 57.813 41.667 9.46 0.00 0.00 4.46
426 431 8.674263 TTTTAAAGGTTACGGATCAAACACTA 57.326 30.769 0.00 0.00 0.00 2.74
428 433 6.549912 AAAGGTTACGGATCAAACACTAAC 57.450 37.500 0.00 0.00 0.00 2.34
515 521 6.980577 TCATGATCCCCTTTTATACCACTTT 58.019 36.000 0.00 0.00 0.00 2.66
573 579 9.143155 ACCCTAAAAGAACAAATGATAAGTGTT 57.857 29.630 0.00 0.00 38.17 3.32
586 592 4.454161 TGATAAGTGTTACATGTGTGGCAC 59.546 41.667 11.55 11.55 35.65 5.01
603 609 1.415374 CACGAAGTAACACCGTCCTG 58.585 55.000 0.00 0.00 41.61 3.86
605 611 1.000938 ACGAAGTAACACCGTCCTGAC 60.001 52.381 0.00 0.00 41.94 3.51
680 686 3.733443 ACCATCCAAACAGAAAGTTGC 57.267 42.857 0.00 0.00 41.19 4.17
703 713 4.641989 CCATGCTAACTAAAGTTGCCATCT 59.358 41.667 5.62 0.00 38.90 2.90
719 739 4.718940 CCATCTTCGGGCAACTAAATTT 57.281 40.909 0.00 0.00 0.00 1.82
720 740 4.423732 CCATCTTCGGGCAACTAAATTTG 58.576 43.478 0.00 0.00 0.00 2.32
721 741 4.157656 CCATCTTCGGGCAACTAAATTTGA 59.842 41.667 0.00 0.00 0.00 2.69
722 742 5.163519 CCATCTTCGGGCAACTAAATTTGAT 60.164 40.000 0.00 0.00 0.00 2.57
723 743 6.039270 CCATCTTCGGGCAACTAAATTTGATA 59.961 38.462 0.00 0.00 0.00 2.15
724 744 7.255590 CCATCTTCGGGCAACTAAATTTGATAT 60.256 37.037 0.00 0.00 0.00 1.63
725 745 7.259290 TCTTCGGGCAACTAAATTTGATATC 57.741 36.000 0.00 0.00 0.00 1.63
762 782 0.388907 AATTGCTTCATGCCACACGC 60.389 50.000 0.00 0.00 42.00 5.34
765 785 2.476051 CTTCATGCCACACGCGTC 59.524 61.111 9.86 0.00 42.08 5.19
766 786 3.353114 CTTCATGCCACACGCGTCG 62.353 63.158 9.86 8.08 42.08 5.12
776 796 0.665068 ACACGCGTCGCACTTATCAA 60.665 50.000 18.75 0.00 0.00 2.57
777 797 0.246757 CACGCGTCGCACTTATCAAC 60.247 55.000 18.75 0.00 0.00 3.18
780 800 1.261989 GCGTCGCACTTATCAACGTA 58.738 50.000 13.44 0.00 35.85 3.57
783 803 3.776795 GCGTCGCACTTATCAACGTAAAG 60.777 47.826 13.44 0.00 35.85 1.85
799 819 6.232139 ACGTAAAGAAAATGTAAACGGAGG 57.768 37.500 0.00 0.00 33.44 4.30
904 2071 5.577164 ACGACTAAAAACAGATTCATCGAGG 59.423 40.000 0.00 0.00 0.00 4.63
1023 2192 1.070445 TCCGTCGCCCTTCTTTTAACA 59.930 47.619 0.00 0.00 0.00 2.41
1099 2268 0.457851 CGTCTTCCTGCGGATTCTCT 59.542 55.000 0.00 0.00 0.00 3.10
1154 2331 2.476852 TAATGGTTGCTCGCCTGCCA 62.477 55.000 0.00 0.00 0.00 4.92
1173 2351 3.440522 GCCACCCTTTAATTCTCTGTCAC 59.559 47.826 0.00 0.00 0.00 3.67
1191 2369 5.673514 TGTCACTTTAGTTAGTTCCGGTTT 58.326 37.500 0.00 0.00 0.00 3.27
1262 2441 2.299867 CTGTTTGGGGTTGGGATTTCTG 59.700 50.000 0.00 0.00 0.00 3.02
1263 2442 1.623311 GTTTGGGGTTGGGATTTCTGG 59.377 52.381 0.00 0.00 0.00 3.86
1264 2443 0.863956 TTGGGGTTGGGATTTCTGGT 59.136 50.000 0.00 0.00 0.00 4.00
1265 2444 0.407918 TGGGGTTGGGATTTCTGGTC 59.592 55.000 0.00 0.00 0.00 4.02
1266 2445 0.704664 GGGGTTGGGATTTCTGGTCT 59.295 55.000 0.00 0.00 0.00 3.85
1267 2446 1.341089 GGGGTTGGGATTTCTGGTCTC 60.341 57.143 0.00 0.00 0.00 3.36
1268 2447 1.636003 GGGTTGGGATTTCTGGTCTCT 59.364 52.381 0.00 0.00 0.00 3.10
1269 2448 2.619074 GGGTTGGGATTTCTGGTCTCTG 60.619 54.545 0.00 0.00 0.00 3.35
1270 2449 2.619074 GGTTGGGATTTCTGGTCTCTGG 60.619 54.545 0.00 0.00 0.00 3.86
1271 2450 2.305927 GTTGGGATTTCTGGTCTCTGGA 59.694 50.000 0.00 0.00 0.00 3.86
1272 2451 2.631384 TGGGATTTCTGGTCTCTGGAA 58.369 47.619 0.00 0.00 0.00 3.53
1273 2452 2.573462 TGGGATTTCTGGTCTCTGGAAG 59.427 50.000 0.00 0.00 0.00 3.46
1274 2453 2.840651 GGGATTTCTGGTCTCTGGAAGA 59.159 50.000 0.00 0.00 43.69 2.87
1275 2454 3.264450 GGGATTTCTGGTCTCTGGAAGAA 59.736 47.826 0.00 0.00 46.34 2.52
1276 2455 4.080072 GGGATTTCTGGTCTCTGGAAGAAT 60.080 45.833 0.00 0.00 46.34 2.40
1277 2456 5.122519 GGATTTCTGGTCTCTGGAAGAATC 58.877 45.833 0.00 0.00 46.34 2.52
1278 2457 5.104569 GGATTTCTGGTCTCTGGAAGAATCT 60.105 44.000 0.00 0.00 46.34 2.40
1279 2458 5.832539 TTTCTGGTCTCTGGAAGAATCTT 57.167 39.130 0.00 0.00 46.34 2.40
1280 2459 5.413309 TTCTGGTCTCTGGAAGAATCTTC 57.587 43.478 14.28 14.28 46.34 2.87
1281 2460 4.420206 TCTGGTCTCTGGAAGAATCTTCA 58.580 43.478 22.71 9.50 46.34 3.02
1306 2503 4.211920 TCCGTGTCCTTTCCAAGATTTTT 58.788 39.130 0.00 0.00 0.00 1.94
1309 2506 5.458015 CGTGTCCTTTCCAAGATTTTTACC 58.542 41.667 0.00 0.00 0.00 2.85
1311 2508 6.460399 CGTGTCCTTTCCAAGATTTTTACCAA 60.460 38.462 0.00 0.00 0.00 3.67
1360 2557 0.458370 GAATTTGTGCGTGGGCCATC 60.458 55.000 10.70 5.55 38.85 3.51
1361 2558 0.899717 AATTTGTGCGTGGGCCATCT 60.900 50.000 10.70 0.00 38.85 2.90
1394 2591 8.510243 ACTGATTTATACAACTTGATGCATGA 57.490 30.769 2.46 0.00 0.00 3.07
1435 2632 8.998277 TGCATATCCTAGTATAATACTCCCTC 57.002 38.462 0.00 0.00 40.14 4.30
1436 2633 8.792734 TGCATATCCTAGTATAATACTCCCTCT 58.207 37.037 0.00 0.00 40.14 3.69
1437 2634 9.073475 GCATATCCTAGTATAATACTCCCTCTG 57.927 40.741 0.00 0.00 40.14 3.35
1442 2639 9.804977 TCCTAGTATAATACTCCCTCTGTAAAC 57.195 37.037 0.00 0.00 40.14 2.01
1443 2640 9.810870 CCTAGTATAATACTCCCTCTGTAAACT 57.189 37.037 0.00 0.00 40.14 2.66
1450 2647 8.431910 AATACTCCCTCTGTAAACTTTAGTGA 57.568 34.615 0.00 0.00 0.00 3.41
1451 2648 6.936968 ACTCCCTCTGTAAACTTTAGTGAT 57.063 37.500 0.00 0.00 0.00 3.06
1452 2649 6.937392 ACTCCCTCTGTAAACTTTAGTGATC 58.063 40.000 0.00 0.00 0.00 2.92
1453 2650 6.726764 ACTCCCTCTGTAAACTTTAGTGATCT 59.273 38.462 0.00 0.00 0.00 2.75
1454 2651 7.894364 ACTCCCTCTGTAAACTTTAGTGATCTA 59.106 37.037 0.00 0.00 0.00 1.98
1455 2652 8.660295 TCCCTCTGTAAACTTTAGTGATCTAA 57.340 34.615 0.00 0.00 34.76 2.10
1456 2653 9.096823 TCCCTCTGTAAACTTTAGTGATCTAAA 57.903 33.333 0.00 0.00 41.87 1.85
1457 2654 9.892130 CCCTCTGTAAACTTTAGTGATCTAAAT 57.108 33.333 0.00 0.00 42.75 1.40
1460 2657 9.944376 TCTGTAAACTTTAGTGATCTAAATGCT 57.056 29.630 0.00 0.00 42.75 3.79
1462 2659 9.944376 TGTAAACTTTAGTGATCTAAATGCTCT 57.056 29.630 0.00 0.00 42.75 4.09
1480 2677 8.608844 AATGCTCTTATATTTCTTTACGGAGG 57.391 34.615 0.00 0.00 0.00 4.30
1481 2678 6.522054 TGCTCTTATATTTCTTTACGGAGGG 58.478 40.000 0.00 0.00 0.00 4.30
1482 2679 6.325545 TGCTCTTATATTTCTTTACGGAGGGA 59.674 38.462 0.00 0.00 0.00 4.20
1483 2680 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
1484 2681 7.471679 GCTCTTATATTTCTTTACGGAGGGAGT 60.472 40.741 0.00 0.00 0.00 3.85
1485 2682 9.075678 CTCTTATATTTCTTTACGGAGGGAGTA 57.924 37.037 0.00 0.00 0.00 2.59
1506 2703 4.207891 ACTAAGCAATCACTAGGTGTGG 57.792 45.455 0.00 0.00 46.20 4.17
1519 2716 0.725117 GGTGTGGCGCAGTAATGTAC 59.275 55.000 10.83 0.00 0.00 2.90
1520 2717 1.434555 GTGTGGCGCAGTAATGTACA 58.565 50.000 10.83 0.00 0.00 2.90
1521 2718 1.393539 GTGTGGCGCAGTAATGTACAG 59.606 52.381 10.83 0.00 0.00 2.74
1525 2722 1.625616 GCGCAGTAATGTACAGTCGT 58.374 50.000 0.30 0.00 0.00 4.34
1595 2795 3.254060 AGCAGTATGTTAGAGTGTTGCG 58.746 45.455 0.00 0.00 39.31 4.85
1596 2796 2.222819 GCAGTATGTTAGAGTGTTGCGC 60.223 50.000 0.00 0.00 39.31 6.09
1655 2855 6.281190 TGTTAGGAGGAATAGAGAGGATCA 57.719 41.667 0.00 0.00 37.82 2.92
1658 2858 7.453126 TGTTAGGAGGAATAGAGAGGATCATTC 59.547 40.741 0.00 0.00 37.82 2.67
1661 2861 5.779771 GGAGGAATAGAGAGGATCATTCTGT 59.220 44.000 3.92 3.13 37.82 3.41
1662 2862 6.269769 GGAGGAATAGAGAGGATCATTCTGTT 59.730 42.308 3.92 3.55 37.82 3.16
1667 2869 5.255710 AGAGAGGATCATTCTGTTGTACG 57.744 43.478 3.92 0.00 37.82 3.67
1672 2874 2.831685 TCATTCTGTTGTACGGCACT 57.168 45.000 0.00 0.00 0.00 4.40
1673 2875 3.945981 TCATTCTGTTGTACGGCACTA 57.054 42.857 0.00 0.00 0.00 2.74
1677 2879 1.341852 TCTGTTGTACGGCACTAGCAA 59.658 47.619 0.00 0.00 44.61 3.91
1688 2890 3.304659 CGGCACTAGCAATTTTCTGTTGT 60.305 43.478 0.00 0.00 44.61 3.32
1699 2901 8.088365 AGCAATTTTCTGTTGTAATTTCCTACC 58.912 33.333 0.00 0.00 0.00 3.18
1712 2914 8.926374 TGTAATTTCCTACCAAGATATAACGGA 58.074 33.333 0.00 0.00 0.00 4.69
1727 2929 1.153086 CGGATTTGGAGCCCTGAGG 60.153 63.158 0.00 0.00 0.00 3.86
1749 2952 2.874701 CCTTATCCGTGGCTGATCAAAG 59.125 50.000 0.00 0.00 0.00 2.77
1758 2961 3.014623 TGGCTGATCAAAGCATTCTCTG 58.985 45.455 8.97 0.00 45.43 3.35
1759 2962 3.276857 GGCTGATCAAAGCATTCTCTGA 58.723 45.455 8.97 0.00 45.43 3.27
1773 2995 7.337167 AGCATTCTCTGATGTAGACTGAAATT 58.663 34.615 0.00 0.00 0.00 1.82
1774 2996 7.495279 AGCATTCTCTGATGTAGACTGAAATTC 59.505 37.037 0.00 0.00 0.00 2.17
1775 2997 7.254727 GCATTCTCTGATGTAGACTGAAATTCC 60.255 40.741 0.00 0.00 0.00 3.01
1847 3069 2.588877 GCCATGCCGACGCTACAT 60.589 61.111 0.00 0.00 35.36 2.29
1850 3072 1.521457 CATGCCGACGCTACATGGT 60.521 57.895 13.02 0.00 37.99 3.55
1853 3075 3.077519 GCCGACGCTACATGGTCCT 62.078 63.158 0.00 0.00 0.00 3.85
1854 3076 1.065928 CCGACGCTACATGGTCCTC 59.934 63.158 0.00 0.00 0.00 3.71
1865 3087 2.289072 ACATGGTCCTCTTCTGTTCGTG 60.289 50.000 0.00 0.00 0.00 4.35
1867 3089 2.036387 TGGTCCTCTTCTGTTCGTGAA 58.964 47.619 0.00 0.00 0.00 3.18
1868 3090 2.632996 TGGTCCTCTTCTGTTCGTGAAT 59.367 45.455 0.00 0.00 0.00 2.57
1871 3093 3.056465 GTCCTCTTCTGTTCGTGAATCCT 60.056 47.826 0.00 0.00 0.00 3.24
1874 3096 2.897326 TCTTCTGTTCGTGAATCCTGGA 59.103 45.455 0.00 0.00 0.00 3.86
1888 3110 0.107459 CCTGGAGCTTACCAAGAGCC 60.107 60.000 0.00 0.00 41.03 4.70
1893 3115 2.633488 GAGCTTACCAAGAGCCGAAAT 58.367 47.619 0.00 0.00 41.03 2.17
1895 3117 2.027192 AGCTTACCAAGAGCCGAAATCA 60.027 45.455 0.00 0.00 41.03 2.57
1906 3128 2.423538 AGCCGAAATCATTCCCGAAAAG 59.576 45.455 0.00 0.00 31.52 2.27
1913 3135 2.340328 ATTCCCGAAAAGCACCGCC 61.340 57.895 0.00 0.00 0.00 6.13
1914 3136 3.776347 TTCCCGAAAAGCACCGCCA 62.776 57.895 0.00 0.00 0.00 5.69
1917 3139 2.556287 CGAAAAGCACCGCCAGTC 59.444 61.111 0.00 0.00 0.00 3.51
1919 3141 1.896660 GAAAAGCACCGCCAGTCCA 60.897 57.895 0.00 0.00 0.00 4.02
1921 3143 0.827507 AAAAGCACCGCCAGTCCATT 60.828 50.000 0.00 0.00 0.00 3.16
1924 3146 0.037590 AGCACCGCCAGTCCATTTAA 59.962 50.000 0.00 0.00 0.00 1.52
1928 3150 1.883926 ACCGCCAGTCCATTTAACAAC 59.116 47.619 0.00 0.00 0.00 3.32
1931 3153 3.564511 CGCCAGTCCATTTAACAACTTG 58.435 45.455 0.00 0.00 0.00 3.16
1934 3156 5.278071 CGCCAGTCCATTTAACAACTTGTTA 60.278 40.000 9.86 9.86 41.45 2.41
1937 3159 6.149633 CAGTCCATTTAACAACTTGTTAGGC 58.850 40.000 12.94 5.20 42.93 3.93
1943 3165 5.782893 TTAACAACTTGTTAGGCTGCAAT 57.217 34.783 12.94 0.00 42.93 3.56
1946 3168 3.188460 ACAACTTGTTAGGCTGCAATACG 59.812 43.478 0.50 0.00 0.00 3.06
1947 3169 2.356135 ACTTGTTAGGCTGCAATACGG 58.644 47.619 0.50 0.00 0.00 4.02
1966 3188 2.064014 GGTTTGTAGTTCCGTCGAAGG 58.936 52.381 11.59 11.59 0.00 3.46
2112 3334 5.165961 TCCACTGACCTCCTATTTTTCTG 57.834 43.478 0.00 0.00 0.00 3.02
2126 3348 9.958180 TCCTATTTTTCTGAATACTCAATCACA 57.042 29.630 0.00 0.00 0.00 3.58
2200 3422 1.404315 GCTTCATCGGACGAGGACTTT 60.404 52.381 8.67 0.00 34.53 2.66
2266 3488 2.540265 ATGTCATTGATCGAGGAGGC 57.460 50.000 0.00 0.00 0.00 4.70
2285 3507 6.099269 AGGAGGCGGAGATAACATAAAAGTAA 59.901 38.462 0.00 0.00 0.00 2.24
2288 3510 7.280356 AGGCGGAGATAACATAAAAGTAATGT 58.720 34.615 0.00 0.00 39.22 2.71
2325 3557 6.114187 TCTTCACTGGTGTTCTTGACATAT 57.886 37.500 0.53 0.00 41.10 1.78
2326 3558 6.533730 TCTTCACTGGTGTTCTTGACATATT 58.466 36.000 0.53 0.00 41.10 1.28
2665 3902 2.961062 ACCAATGAGTTTGCTTTGCTCT 59.039 40.909 0.00 0.00 33.73 4.09
2669 3906 6.161381 CCAATGAGTTTGCTTTGCTCTATTT 58.839 36.000 0.00 0.00 33.73 1.40
2671 3908 6.830873 ATGAGTTTGCTTTGCTCTATTTCT 57.169 33.333 0.00 0.00 0.00 2.52
2673 3910 7.042797 TGAGTTTGCTTTGCTCTATTTCTTT 57.957 32.000 0.00 0.00 0.00 2.52
2674 3911 7.491682 TGAGTTTGCTTTGCTCTATTTCTTTT 58.508 30.769 0.00 0.00 0.00 2.27
2675 3912 7.436080 TGAGTTTGCTTTGCTCTATTTCTTTTG 59.564 33.333 0.00 0.00 0.00 2.44
2676 3913 7.491682 AGTTTGCTTTGCTCTATTTCTTTTGA 58.508 30.769 0.00 0.00 0.00 2.69
2677 3914 7.650903 AGTTTGCTTTGCTCTATTTCTTTTGAG 59.349 33.333 0.00 0.00 0.00 3.02
2678 3915 6.882610 TGCTTTGCTCTATTTCTTTTGAGA 57.117 33.333 0.00 0.00 0.00 3.27
2679 3916 7.275888 TGCTTTGCTCTATTTCTTTTGAGAA 57.724 32.000 0.00 0.00 0.00 2.87
2680 3917 7.365741 TGCTTTGCTCTATTTCTTTTGAGAAG 58.634 34.615 0.00 0.00 0.00 2.85
2681 3918 7.229306 TGCTTTGCTCTATTTCTTTTGAGAAGA 59.771 33.333 0.00 0.00 0.00 2.87
2682 3919 7.750014 GCTTTGCTCTATTTCTTTTGAGAAGAG 59.250 37.037 0.00 0.00 35.41 2.85
2683 3920 6.734104 TGCTCTATTTCTTTTGAGAAGAGC 57.266 37.500 16.19 16.19 45.83 4.09
2684 3921 6.734104 GCTCTATTTCTTTTGAGAAGAGCA 57.266 37.500 17.36 0.00 45.44 4.26
2685 3922 7.319142 GCTCTATTTCTTTTGAGAAGAGCAT 57.681 36.000 17.36 1.82 45.44 3.79
2686 3923 7.188157 GCTCTATTTCTTTTGAGAAGAGCATG 58.812 38.462 17.36 0.00 45.44 4.06
2687 3924 7.081526 TCTATTTCTTTTGAGAAGAGCATGC 57.918 36.000 10.51 10.51 0.00 4.06
2688 3925 4.510038 TTTCTTTTGAGAAGAGCATGCC 57.490 40.909 15.66 6.03 0.00 4.40
2689 3926 3.430042 TCTTTTGAGAAGAGCATGCCT 57.570 42.857 15.66 8.56 0.00 4.75
2710 3947 6.998074 TGCCTTTTACTTTCTTCTGAATCTGA 59.002 34.615 0.00 0.00 31.56 3.27
2729 3966 6.961360 TCTGATAATGACTGTCGGTAGATT 57.039 37.500 2.98 0.00 0.00 2.40
2735 3972 6.777213 AATGACTGTCGGTAGATTAAGTCT 57.223 37.500 2.98 0.00 41.11 3.24
2750 3987 8.354711 AGATTAAGTCTGATAAGTCACACTGA 57.645 34.615 0.00 0.00 34.38 3.41
2814 4054 2.559668 AGGACATGTTCATTGTGCCAAG 59.440 45.455 6.96 0.00 36.21 3.61
2852 4092 2.147958 CGGGAGTTTCGTTTCCATTCA 58.852 47.619 0.00 0.00 35.09 2.57
2872 4112 5.391312 TCATCTCAAGTCTCAACGATGAA 57.609 39.130 0.00 0.00 35.63 2.57
2879 4119 7.226523 TCTCAAGTCTCAACGATGAATTTTTCA 59.773 33.333 0.00 0.00 45.01 2.69
2982 4225 2.621713 TGGTCTACCACCCCACCA 59.378 61.111 0.00 0.00 46.18 4.17
3051 4294 3.207778 AGCAAACGCTTACTACACCAAA 58.792 40.909 0.00 0.00 35.79 3.28
3070 4313 2.530460 AGGCATGGCATGGTAAGAAA 57.470 45.000 27.48 0.00 0.00 2.52
3083 4326 7.094377 GGCATGGTAAGAAAGTTTTATCTGTCA 60.094 37.037 0.00 0.00 0.00 3.58
3086 4329 8.740123 TGGTAAGAAAGTTTTATCTGTCAACA 57.260 30.769 0.00 0.00 0.00 3.33
3138 4391 8.678593 TCTATATTATATAGCACTCTGTCCCG 57.321 38.462 12.98 0.00 0.00 5.14
3143 4396 3.735237 ATAGCACTCTGTCCCGTAATG 57.265 47.619 0.00 0.00 0.00 1.90
3149 4402 4.421948 CACTCTGTCCCGTAATGTAAGAC 58.578 47.826 0.00 0.00 0.00 3.01
3151 4404 2.159338 TCTGTCCCGTAATGTAAGACGC 60.159 50.000 0.00 0.00 37.75 5.19
3152 4405 1.135024 TGTCCCGTAATGTAAGACGCC 60.135 52.381 0.00 0.00 37.75 5.68
3157 4410 2.350498 CCGTAATGTAAGACGCCTTTGG 59.650 50.000 0.00 0.00 37.75 3.28
3159 4412 3.061697 CGTAATGTAAGACGCCTTTGGAC 59.938 47.826 0.00 0.00 33.94 4.02
3160 4413 2.851263 ATGTAAGACGCCTTTGGACA 57.149 45.000 0.00 0.00 33.94 4.02
3161 4414 1.873698 TGTAAGACGCCTTTGGACAC 58.126 50.000 0.00 0.00 33.94 3.67
3162 4415 1.414919 TGTAAGACGCCTTTGGACACT 59.585 47.619 0.00 0.00 33.94 3.55
3164 4417 2.165319 AAGACGCCTTTGGACACTAC 57.835 50.000 0.00 0.00 0.00 2.73
3165 4418 1.045407 AGACGCCTTTGGACACTACA 58.955 50.000 0.00 0.00 0.00 2.74
3166 4419 1.145803 GACGCCTTTGGACACTACAC 58.854 55.000 0.00 0.00 0.00 2.90
3168 4421 1.965643 ACGCCTTTGGACACTACACTA 59.034 47.619 0.00 0.00 0.00 2.74
3169 4422 2.029290 ACGCCTTTGGACACTACACTAG 60.029 50.000 0.00 0.00 0.00 2.57
3170 4423 2.029290 CGCCTTTGGACACTACACTAGT 60.029 50.000 0.00 0.00 40.28 2.57
3204 4457 3.877508 GTCTGAAATTATGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
3211 4464 4.524802 TTATGGAACGGAGGGAGTACTA 57.475 45.455 0.00 0.00 0.00 1.82
3212 4465 2.134789 TGGAACGGAGGGAGTACTAC 57.865 55.000 0.00 0.00 0.00 2.73
3213 4466 1.637553 TGGAACGGAGGGAGTACTACT 59.362 52.381 4.77 1.85 0.00 2.57
3215 4468 3.266772 TGGAACGGAGGGAGTACTACTTA 59.733 47.826 4.77 0.00 0.00 2.24
3216 4469 3.629855 GGAACGGAGGGAGTACTACTTAC 59.370 52.174 4.77 0.00 0.00 2.34
3217 4470 3.289407 ACGGAGGGAGTACTACTTACC 57.711 52.381 4.77 5.49 0.00 2.85
3225 4478 4.275443 GGGAGTACTACTTACCACTGATCG 59.725 50.000 4.77 0.00 0.00 3.69
3230 4483 6.827251 AGTACTACTTACCACTGATCGAATCA 59.173 38.462 0.00 0.00 37.76 2.57
3306 4559 4.462394 GCTGTGACAGGCAGTTCA 57.538 55.556 15.24 0.00 36.42 3.18
3340 4593 0.460987 AGTAGCAAGTCGGATGCAGC 60.461 55.000 6.38 0.00 46.22 5.25
3379 4632 2.541762 GAGGTTCGTAGCAGCAATCATC 59.458 50.000 0.00 0.00 0.00 2.92
3408 4661 8.553459 TCTCTGGAAACTAGTCAAATGAAATC 57.447 34.615 0.00 0.00 0.00 2.17
3410 4663 8.327941 TCTGGAAACTAGTCAAATGAAATCAG 57.672 34.615 0.00 0.00 0.00 2.90
3436 4689 4.709397 CCTCATTGGTTTGCCTGGTTATTA 59.291 41.667 0.00 0.00 35.27 0.98
3439 4692 7.251321 TCATTGGTTTGCCTGGTTATTATTT 57.749 32.000 0.00 0.00 35.27 1.40
3440 4693 7.684529 TCATTGGTTTGCCTGGTTATTATTTT 58.315 30.769 0.00 0.00 35.27 1.82
3448 4701 7.095695 TGCCTGGTTATTATTTTAACTCTGC 57.904 36.000 0.00 0.00 33.49 4.26
3541 4794 3.157087 CAAGTTTACAGAACCCATGCCT 58.843 45.455 0.00 0.00 0.00 4.75
3698 4955 4.082408 TCAGCTACGATATAATGGAACCGG 60.082 45.833 0.00 0.00 0.00 5.28
3710 4967 1.014352 GGAACCGGACATGTATGTGC 58.986 55.000 9.46 4.31 44.42 4.57
3711 4968 1.406887 GGAACCGGACATGTATGTGCT 60.407 52.381 9.46 0.00 45.49 4.40
3830 5109 7.971183 ACTTCATTTCTCCTTTTGTACTCTC 57.029 36.000 0.00 0.00 0.00 3.20
3831 5110 7.740805 ACTTCATTTCTCCTTTTGTACTCTCT 58.259 34.615 0.00 0.00 0.00 3.10
3832 5111 8.214364 ACTTCATTTCTCCTTTTGTACTCTCTT 58.786 33.333 0.00 0.00 0.00 2.85
3833 5112 8.608844 TTCATTTCTCCTTTTGTACTCTCTTC 57.391 34.615 0.00 0.00 0.00 2.87
3834 5113 7.735917 TCATTTCTCCTTTTGTACTCTCTTCA 58.264 34.615 0.00 0.00 0.00 3.02
3835 5114 8.378565 TCATTTCTCCTTTTGTACTCTCTTCAT 58.621 33.333 0.00 0.00 0.00 2.57
3836 5115 9.007901 CATTTCTCCTTTTGTACTCTCTTCATT 57.992 33.333 0.00 0.00 0.00 2.57
3837 5116 8.980481 TTTCTCCTTTTGTACTCTCTTCATTT 57.020 30.769 0.00 0.00 0.00 2.32
3838 5117 8.608844 TTCTCCTTTTGTACTCTCTTCATTTC 57.391 34.615 0.00 0.00 0.00 2.17
3839 5118 7.967908 TCTCCTTTTGTACTCTCTTCATTTCT 58.032 34.615 0.00 0.00 0.00 2.52
3840 5119 8.432805 TCTCCTTTTGTACTCTCTTCATTTCTT 58.567 33.333 0.00 0.00 0.00 2.52
3841 5120 8.980481 TCCTTTTGTACTCTCTTCATTTCTTT 57.020 30.769 0.00 0.00 0.00 2.52
3842 5121 9.408648 TCCTTTTGTACTCTCTTCATTTCTTTT 57.591 29.630 0.00 0.00 0.00 2.27
3851 5130 8.686334 ACTCTCTTCATTTCTTTTTAGTTTGCA 58.314 29.630 0.00 0.00 0.00 4.08
3852 5131 9.688592 CTCTCTTCATTTCTTTTTAGTTTGCAT 57.311 29.630 0.00 0.00 0.00 3.96
3881 5160 9.719355 AAGATTTGGTTAAAGTCAAACTTTGTT 57.281 25.926 13.83 0.00 46.83 2.83
3885 5164 9.984190 TTTGGTTAAAGTCAAACTTTGTTAACT 57.016 25.926 13.83 7.11 46.83 2.24
3886 5165 9.984190 TTGGTTAAAGTCAAACTTTGTTAACTT 57.016 25.926 13.83 11.10 46.83 2.66
3887 5166 9.984190 TGGTTAAAGTCAAACTTTGTTAACTTT 57.016 25.926 17.38 17.38 46.83 2.66
3951 5230 9.851686 ATAGAATCAATACTTTTAGGTGCATCA 57.148 29.630 0.00 0.00 0.00 3.07
3952 5231 8.757982 AGAATCAATACTTTTAGGTGCATCAT 57.242 30.769 0.00 0.00 0.00 2.45
3953 5232 8.627403 AGAATCAATACTTTTAGGTGCATCATG 58.373 33.333 0.00 0.00 0.00 3.07
3954 5233 8.523915 AATCAATACTTTTAGGTGCATCATGA 57.476 30.769 0.00 0.00 0.00 3.07
3955 5234 7.936496 TCAATACTTTTAGGTGCATCATGAA 57.064 32.000 0.00 0.00 0.00 2.57
3956 5235 8.347004 TCAATACTTTTAGGTGCATCATGAAA 57.653 30.769 0.00 0.00 0.00 2.69
3957 5236 8.970020 TCAATACTTTTAGGTGCATCATGAAAT 58.030 29.630 0.00 0.00 0.00 2.17
3958 5237 9.590451 CAATACTTTTAGGTGCATCATGAAATT 57.410 29.630 0.00 0.00 0.00 1.82
4000 5279 9.982651 AGCGTTAGTATTGTAGATGTTGATATT 57.017 29.630 0.00 0.00 0.00 1.28
4045 5324 6.115450 ACTTTACAAAGTTTGACTTCGACC 57.885 37.500 22.23 0.00 46.52 4.79
4046 5325 5.644636 ACTTTACAAAGTTTGACTTCGACCA 59.355 36.000 22.23 0.00 46.52 4.02
4047 5326 6.149807 ACTTTACAAAGTTTGACTTCGACCAA 59.850 34.615 22.23 0.00 46.52 3.67
4048 5327 6.497785 TTACAAAGTTTGACTTCGACCAAA 57.502 33.333 22.23 3.54 37.47 3.28
4049 5328 5.576447 ACAAAGTTTGACTTCGACCAAAT 57.424 34.783 22.23 0.00 37.47 2.32
4050 5329 5.578776 ACAAAGTTTGACTTCGACCAAATC 58.421 37.500 22.23 5.13 37.47 2.17
4051 5330 5.357032 ACAAAGTTTGACTTCGACCAAATCT 59.643 36.000 22.23 6.69 37.47 2.40
4052 5331 6.127730 ACAAAGTTTGACTTCGACCAAATCTT 60.128 34.615 22.23 10.55 37.47 2.40
4053 5332 7.066525 ACAAAGTTTGACTTCGACCAAATCTTA 59.933 33.333 22.23 0.00 37.47 2.10
4054 5333 7.745620 AAGTTTGACTTCGACCAAATCTTAT 57.254 32.000 9.19 0.00 31.77 1.73
4055 5334 8.842358 AAGTTTGACTTCGACCAAATCTTATA 57.158 30.769 9.19 0.00 31.77 0.98
4056 5335 9.449719 AAGTTTGACTTCGACCAAATCTTATAT 57.550 29.630 9.19 0.00 31.77 0.86
4057 5336 8.883731 AGTTTGACTTCGACCAAATCTTATATG 58.116 33.333 9.19 0.00 35.14 1.78
4058 5337 6.844696 TGACTTCGACCAAATCTTATATGC 57.155 37.500 0.00 0.00 0.00 3.14
4059 5338 6.345298 TGACTTCGACCAAATCTTATATGCA 58.655 36.000 0.00 0.00 0.00 3.96
4060 5339 6.821160 TGACTTCGACCAAATCTTATATGCAA 59.179 34.615 0.00 0.00 0.00 4.08
4061 5340 7.335673 TGACTTCGACCAAATCTTATATGCAAA 59.664 33.333 0.00 0.00 0.00 3.68
4062 5341 7.472543 ACTTCGACCAAATCTTATATGCAAAC 58.527 34.615 0.00 0.00 0.00 2.93
4063 5342 7.336931 ACTTCGACCAAATCTTATATGCAAACT 59.663 33.333 0.00 0.00 0.00 2.66
4064 5343 8.725405 TTCGACCAAATCTTATATGCAAACTA 57.275 30.769 0.00 0.00 0.00 2.24
4065 5344 8.725405 TCGACCAAATCTTATATGCAAACTAA 57.275 30.769 0.00 0.00 0.00 2.24
4066 5345 9.168451 TCGACCAAATCTTATATGCAAACTAAA 57.832 29.630 0.00 0.00 0.00 1.85
4067 5346 9.781834 CGACCAAATCTTATATGCAAACTAAAA 57.218 29.630 0.00 0.00 0.00 1.52
4075 5354 9.834628 TCTTATATGCAAACTAAAAAGAAACGG 57.165 29.630 0.00 0.00 0.00 4.44
4076 5355 9.834628 CTTATATGCAAACTAAAAAGAAACGGA 57.165 29.630 0.00 0.00 0.00 4.69
4077 5356 9.834628 TTATATGCAAACTAAAAAGAAACGGAG 57.165 29.630 0.00 0.00 0.00 4.63
4078 5357 4.927422 TGCAAACTAAAAAGAAACGGAGG 58.073 39.130 0.00 0.00 0.00 4.30
4079 5358 4.202070 TGCAAACTAAAAAGAAACGGAGGG 60.202 41.667 0.00 0.00 0.00 4.30
4080 5359 4.037089 GCAAACTAAAAAGAAACGGAGGGA 59.963 41.667 0.00 0.00 0.00 4.20
4081 5360 5.758924 CAAACTAAAAAGAAACGGAGGGAG 58.241 41.667 0.00 0.00 0.00 4.30
4082 5361 4.701651 ACTAAAAAGAAACGGAGGGAGT 57.298 40.909 0.00 0.00 0.00 3.85
4083 5362 5.813513 ACTAAAAAGAAACGGAGGGAGTA 57.186 39.130 0.00 0.00 0.00 2.59
4084 5363 5.545588 ACTAAAAAGAAACGGAGGGAGTAC 58.454 41.667 0.00 0.00 0.00 2.73
4138 5417 9.838339 ACTGTCATTGGATTTCTAACTATTAGG 57.162 33.333 0.00 0.00 34.00 2.69
4139 5418 8.677148 TGTCATTGGATTTCTAACTATTAGGC 57.323 34.615 0.00 0.00 34.00 3.93
4140 5419 8.494433 TGTCATTGGATTTCTAACTATTAGGCT 58.506 33.333 0.00 0.00 34.00 4.58
4141 5420 8.994170 GTCATTGGATTTCTAACTATTAGGCTC 58.006 37.037 0.00 0.00 34.00 4.70
4142 5421 8.157476 TCATTGGATTTCTAACTATTAGGCTCC 58.843 37.037 0.00 1.94 34.00 4.70
4143 5422 6.097915 TGGATTTCTAACTATTAGGCTCCG 57.902 41.667 0.00 0.00 32.73 4.63
4144 5423 5.601313 TGGATTTCTAACTATTAGGCTCCGT 59.399 40.000 0.00 0.00 32.73 4.69
4145 5424 6.099269 TGGATTTCTAACTATTAGGCTCCGTT 59.901 38.462 0.00 0.00 32.73 4.44
4146 5425 6.645827 GGATTTCTAACTATTAGGCTCCGTTC 59.354 42.308 0.00 0.00 34.00 3.95
4147 5426 4.825546 TCTAACTATTAGGCTCCGTTCG 57.174 45.455 0.00 0.00 34.00 3.95
4148 5427 2.884894 AACTATTAGGCTCCGTTCGG 57.115 50.000 4.74 4.74 0.00 4.30
4149 5428 1.772836 ACTATTAGGCTCCGTTCGGT 58.227 50.000 11.04 0.00 0.00 4.69
4150 5429 2.936202 ACTATTAGGCTCCGTTCGGTA 58.064 47.619 11.04 0.00 0.00 4.02
4151 5430 3.494332 ACTATTAGGCTCCGTTCGGTAT 58.506 45.455 11.04 0.00 0.00 2.73
4152 5431 2.814280 ATTAGGCTCCGTTCGGTATG 57.186 50.000 11.04 4.62 0.00 2.39
4153 5432 0.748450 TTAGGCTCCGTTCGGTATGG 59.252 55.000 11.04 2.44 0.00 2.74
4154 5433 0.106569 TAGGCTCCGTTCGGTATGGA 60.107 55.000 11.04 0.00 39.71 3.41
4158 5437 3.286404 TCCGTTCGGTATGGAGGAA 57.714 52.632 11.04 0.00 37.00 3.36
4159 5438 1.108776 TCCGTTCGGTATGGAGGAAG 58.891 55.000 11.04 0.00 37.00 3.46
4160 5439 1.108776 CCGTTCGGTATGGAGGAAGA 58.891 55.000 2.82 0.00 34.56 2.87
4161 5440 1.067212 CCGTTCGGTATGGAGGAAGAG 59.933 57.143 2.82 0.00 34.56 2.85
4162 5441 2.022195 CGTTCGGTATGGAGGAAGAGA 58.978 52.381 0.00 0.00 0.00 3.10
4163 5442 2.426024 CGTTCGGTATGGAGGAAGAGAA 59.574 50.000 0.00 0.00 0.00 2.87
4164 5443 3.119245 CGTTCGGTATGGAGGAAGAGAAA 60.119 47.826 0.00 0.00 0.00 2.52
4165 5444 4.619863 CGTTCGGTATGGAGGAAGAGAAAA 60.620 45.833 0.00 0.00 0.00 2.29
4166 5445 4.467198 TCGGTATGGAGGAAGAGAAAAC 57.533 45.455 0.00 0.00 0.00 2.43
4167 5446 3.119245 TCGGTATGGAGGAAGAGAAAACG 60.119 47.826 0.00 0.00 0.00 3.60
4168 5447 3.119245 CGGTATGGAGGAAGAGAAAACGA 60.119 47.826 0.00 0.00 0.00 3.85
4169 5448 4.619863 CGGTATGGAGGAAGAGAAAACGAA 60.620 45.833 0.00 0.00 0.00 3.85
4170 5449 4.870991 GGTATGGAGGAAGAGAAAACGAAG 59.129 45.833 0.00 0.00 0.00 3.79
4171 5450 3.402628 TGGAGGAAGAGAAAACGAAGG 57.597 47.619 0.00 0.00 0.00 3.46
4172 5451 2.969950 TGGAGGAAGAGAAAACGAAGGA 59.030 45.455 0.00 0.00 0.00 3.36
4173 5452 3.389983 TGGAGGAAGAGAAAACGAAGGAA 59.610 43.478 0.00 0.00 0.00 3.36
4174 5453 4.141574 TGGAGGAAGAGAAAACGAAGGAAA 60.142 41.667 0.00 0.00 0.00 3.13
4175 5454 4.820173 GGAGGAAGAGAAAACGAAGGAAAA 59.180 41.667 0.00 0.00 0.00 2.29
4176 5455 5.298527 GGAGGAAGAGAAAACGAAGGAAAAA 59.701 40.000 0.00 0.00 0.00 1.94
4193 5472 2.012937 AAAACGACGTCACAGGAACA 57.987 45.000 17.16 0.00 0.00 3.18
4194 5473 2.012937 AAACGACGTCACAGGAACAA 57.987 45.000 17.16 0.00 0.00 2.83
4195 5474 1.567504 AACGACGTCACAGGAACAAG 58.432 50.000 17.16 0.00 0.00 3.16
4196 5475 0.249322 ACGACGTCACAGGAACAAGG 60.249 55.000 17.16 0.00 0.00 3.61
4197 5476 0.249322 CGACGTCACAGGAACAAGGT 60.249 55.000 17.16 0.00 0.00 3.50
4198 5477 1.805120 CGACGTCACAGGAACAAGGTT 60.805 52.381 17.16 0.00 0.00 3.50
4199 5478 2.285977 GACGTCACAGGAACAAGGTTT 58.714 47.619 11.55 0.00 0.00 3.27
4200 5479 2.014128 ACGTCACAGGAACAAGGTTTG 58.986 47.619 0.00 0.00 0.00 2.93
4201 5480 2.285083 CGTCACAGGAACAAGGTTTGA 58.715 47.619 0.00 0.00 0.00 2.69
4202 5481 2.878406 CGTCACAGGAACAAGGTTTGAT 59.122 45.455 0.00 0.00 0.00 2.57
4203 5482 3.303990 CGTCACAGGAACAAGGTTTGATG 60.304 47.826 0.00 0.00 0.00 3.07
4204 5483 3.882888 GTCACAGGAACAAGGTTTGATGA 59.117 43.478 0.00 0.00 0.00 2.92
4205 5484 4.338118 GTCACAGGAACAAGGTTTGATGAA 59.662 41.667 0.00 0.00 0.00 2.57
4206 5485 4.338118 TCACAGGAACAAGGTTTGATGAAC 59.662 41.667 0.00 0.00 37.53 3.18
4207 5486 4.097741 CACAGGAACAAGGTTTGATGAACA 59.902 41.667 0.00 0.00 40.13 3.18
4208 5487 4.339247 ACAGGAACAAGGTTTGATGAACAG 59.661 41.667 0.00 0.00 40.13 3.16
4209 5488 4.339247 CAGGAACAAGGTTTGATGAACAGT 59.661 41.667 0.00 0.00 40.13 3.55
4210 5489 5.530915 CAGGAACAAGGTTTGATGAACAGTA 59.469 40.000 0.00 0.00 40.13 2.74
4211 5490 5.531287 AGGAACAAGGTTTGATGAACAGTAC 59.469 40.000 0.00 0.00 40.13 2.73
4212 5491 5.298276 GGAACAAGGTTTGATGAACAGTACA 59.702 40.000 0.00 0.00 40.13 2.90
4213 5492 6.183360 GGAACAAGGTTTGATGAACAGTACAA 60.183 38.462 0.00 0.00 40.13 2.41
4214 5493 6.767524 ACAAGGTTTGATGAACAGTACAAA 57.232 33.333 0.00 0.00 40.13 2.83
4215 5494 6.560711 ACAAGGTTTGATGAACAGTACAAAC 58.439 36.000 0.00 0.00 46.04 2.93
4221 5500 8.673626 GTTTGATGAACAGTACAAACATATGG 57.326 34.615 7.80 0.00 46.04 2.74
4222 5501 8.511321 GTTTGATGAACAGTACAAACATATGGA 58.489 33.333 7.80 0.00 46.04 3.41
4223 5502 8.628630 TTGATGAACAGTACAAACATATGGAA 57.371 30.769 7.80 0.00 0.00 3.53
4224 5503 8.806429 TGATGAACAGTACAAACATATGGAAT 57.194 30.769 7.80 0.00 0.00 3.01
4225 5504 8.892723 TGATGAACAGTACAAACATATGGAATC 58.107 33.333 7.80 0.00 0.00 2.52
4226 5505 9.113838 GATGAACAGTACAAACATATGGAATCT 57.886 33.333 7.80 0.00 0.00 2.40
4227 5506 8.267620 TGAACAGTACAAACATATGGAATCTG 57.732 34.615 7.80 9.74 0.00 2.90
4228 5507 8.100164 TGAACAGTACAAACATATGGAATCTGA 58.900 33.333 7.80 0.00 0.00 3.27
4229 5508 8.862325 AACAGTACAAACATATGGAATCTGAA 57.138 30.769 7.80 0.00 0.00 3.02
4230 5509 8.862325 ACAGTACAAACATATGGAATCTGAAA 57.138 30.769 7.80 0.00 0.00 2.69
4231 5510 9.295825 ACAGTACAAACATATGGAATCTGAAAA 57.704 29.630 7.80 0.00 0.00 2.29
4232 5511 9.559958 CAGTACAAACATATGGAATCTGAAAAC 57.440 33.333 7.80 0.23 0.00 2.43
4233 5512 8.450964 AGTACAAACATATGGAATCTGAAAACG 58.549 33.333 7.80 0.00 0.00 3.60
4234 5513 7.214467 ACAAACATATGGAATCTGAAAACGT 57.786 32.000 7.80 0.00 0.00 3.99
4235 5514 8.330466 ACAAACATATGGAATCTGAAAACGTA 57.670 30.769 7.80 0.00 0.00 3.57
4236 5515 8.450964 ACAAACATATGGAATCTGAAAACGTAG 58.549 33.333 7.80 0.00 0.00 3.51
4237 5516 7.553881 AACATATGGAATCTGAAAACGTAGG 57.446 36.000 7.80 0.00 0.00 3.18
4238 5517 6.884832 ACATATGGAATCTGAAAACGTAGGA 58.115 36.000 7.80 0.00 0.00 2.94
4239 5518 7.335627 ACATATGGAATCTGAAAACGTAGGAA 58.664 34.615 7.80 0.00 0.00 3.36
4240 5519 7.280205 ACATATGGAATCTGAAAACGTAGGAAC 59.720 37.037 7.80 0.00 0.00 3.62
4241 5520 4.320870 TGGAATCTGAAAACGTAGGAACC 58.679 43.478 0.00 0.00 0.00 3.62
4242 5521 4.202377 TGGAATCTGAAAACGTAGGAACCA 60.202 41.667 0.00 0.00 0.00 3.67
4243 5522 4.392138 GGAATCTGAAAACGTAGGAACCAG 59.608 45.833 0.00 0.00 0.00 4.00
4244 5523 3.396260 TCTGAAAACGTAGGAACCAGG 57.604 47.619 0.00 0.00 0.00 4.45
4245 5524 2.967201 TCTGAAAACGTAGGAACCAGGA 59.033 45.455 0.00 0.00 0.00 3.86
4246 5525 3.388676 TCTGAAAACGTAGGAACCAGGAA 59.611 43.478 0.00 0.00 0.00 3.36
4247 5526 3.735591 TGAAAACGTAGGAACCAGGAAG 58.264 45.455 0.00 0.00 0.00 3.46
4254 5533 0.535102 AGGAACCAGGAAGCGTGTTG 60.535 55.000 0.00 0.00 0.00 3.33
4273 5552 5.177696 GTGTTGGCTGTTTTACAAACAACAA 59.822 36.000 20.63 13.56 46.47 2.83
4280 5559 6.312672 GCTGTTTTACAAACAACAATGTCCTT 59.687 34.615 3.77 0.00 39.40 3.36
4299 5578 4.096382 TCCTTCTGTCTTGCAAAGTTTCAC 59.904 41.667 0.00 0.00 46.34 3.18
4316 5596 2.954316 TCACTTGCATGTAGTGTACCG 58.046 47.619 21.62 0.00 42.77 4.02
4345 5625 6.897413 ACAAAAGAGGAGCAATAAATACCCAT 59.103 34.615 0.00 0.00 0.00 4.00
4376 5656 7.908827 TTGACACTGTAAACAGAGTTTACAA 57.091 32.000 26.12 14.60 45.42 2.41
4381 5661 8.569641 ACACTGTAAACAGAGTTTACAACAAAA 58.430 29.630 26.12 10.61 43.51 2.44
4388 5668 9.719355 AAACAGAGTTTACAACAAAATTTTCCT 57.281 25.926 0.00 0.00 0.00 3.36
4396 5676 6.109156 ACAACAAAATTTTCCTCCATACCC 57.891 37.500 0.00 0.00 0.00 3.69
4404 5684 2.170012 TCCTCCATACCCAGTACCAC 57.830 55.000 0.00 0.00 0.00 4.16
4435 5715 1.004277 ACCAAGCTTTTCGGCATCCTA 59.996 47.619 0.00 0.00 34.17 2.94
4462 5745 1.217057 ATCACACCCCCATGAGGCTT 61.217 55.000 0.00 0.00 0.00 4.35
4478 5761 2.630098 AGGCTTAGCTAGATCATCGCAA 59.370 45.455 3.59 0.00 0.00 4.85
4509 5792 0.106015 GCCATTAGCCCATTCCCTGT 60.106 55.000 0.00 0.00 34.35 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 2.427095 AGGTCCTCTTGCACAAACAAAC 59.573 45.455 0.00 0.00 0.00 2.93
172 176 7.793948 AACCCCATATAGGACACTTATAGAC 57.206 40.000 0.00 0.00 41.22 2.59
175 179 7.941053 ACAAACCCCATATAGGACACTTATA 57.059 36.000 0.00 0.00 41.22 0.98
178 182 6.645884 TTACAAACCCCATATAGGACACTT 57.354 37.500 0.00 0.00 41.22 3.16
217 221 5.706833 TGGTCCGGTTAATTAGAGAAAAACC 59.293 40.000 0.00 0.00 36.95 3.27
240 244 6.998968 AATGAGGCAAAAGATAAGAGAGTG 57.001 37.500 0.00 0.00 0.00 3.51
290 295 7.653713 CAGGATCATATTTTCTGTACTAGCGTT 59.346 37.037 0.00 0.00 0.00 4.84
323 328 6.403866 AATAAAAGATTGAGCACACCACAA 57.596 33.333 0.00 0.00 0.00 3.33
325 330 8.296713 TCTAAAATAAAAGATTGAGCACACCAC 58.703 33.333 0.00 0.00 0.00 4.16
426 431 7.174253 TGAAAACTTATCTAACCAATCTGCGTT 59.826 33.333 0.00 0.00 0.00 4.84
428 433 7.072177 TGAAAACTTATCTAACCAATCTGCG 57.928 36.000 0.00 0.00 0.00 5.18
556 562 9.117145 CACACATGTAACACTTATCATTTGTTC 57.883 33.333 0.00 0.00 35.18 3.18
573 579 3.061322 GTTACTTCGTGCCACACATGTA 58.939 45.455 0.00 0.00 36.60 2.29
586 592 1.694639 GTCAGGACGGTGTTACTTCG 58.305 55.000 0.00 0.00 0.00 3.79
653 659 7.039313 ACTTTCTGTTTGGATGGTAAGTTTC 57.961 36.000 0.00 0.00 0.00 2.78
670 676 5.627499 TTAGTTAGCATGGCAACTTTCTG 57.373 39.130 0.00 0.00 34.09 3.02
680 686 4.641989 AGATGGCAACTTTAGTTAGCATGG 59.358 41.667 14.45 0.00 36.32 3.66
703 713 7.397892 TTGATATCAAATTTAGTTGCCCGAA 57.602 32.000 15.82 0.00 32.11 4.30
716 736 7.387673 TCAGTCTGACGTTGTTTGATATCAAAT 59.612 33.333 28.66 15.69 46.12 2.32
717 737 6.704050 TCAGTCTGACGTTGTTTGATATCAAA 59.296 34.615 23.86 23.86 42.90 2.69
718 738 6.220201 TCAGTCTGACGTTGTTTGATATCAA 58.780 36.000 14.23 14.23 0.00 2.57
719 739 5.778862 TCAGTCTGACGTTGTTTGATATCA 58.221 37.500 0.00 0.00 0.00 2.15
720 740 6.706055 TTCAGTCTGACGTTGTTTGATATC 57.294 37.500 0.78 0.00 0.00 1.63
721 741 7.672983 ATTTCAGTCTGACGTTGTTTGATAT 57.327 32.000 0.78 0.00 0.00 1.63
722 742 7.351981 CAATTTCAGTCTGACGTTGTTTGATA 58.648 34.615 0.78 0.00 0.00 2.15
723 743 6.201517 CAATTTCAGTCTGACGTTGTTTGAT 58.798 36.000 0.78 0.00 0.00 2.57
724 744 5.568482 CAATTTCAGTCTGACGTTGTTTGA 58.432 37.500 0.78 0.00 0.00 2.69
725 745 4.204978 GCAATTTCAGTCTGACGTTGTTTG 59.795 41.667 19.76 11.66 0.00 2.93
762 782 3.605056 TCTTTACGTTGATAAGTGCGACG 59.395 43.478 0.00 0.00 45.99 5.12
765 785 6.795114 ACATTTTCTTTACGTTGATAAGTGCG 59.205 34.615 0.00 0.00 0.00 5.34
766 786 9.601971 TTACATTTTCTTTACGTTGATAAGTGC 57.398 29.630 0.00 0.00 0.00 4.40
776 796 5.759763 ACCTCCGTTTACATTTTCTTTACGT 59.240 36.000 0.00 0.00 0.00 3.57
777 797 6.232139 ACCTCCGTTTACATTTTCTTTACG 57.768 37.500 0.00 0.00 0.00 3.18
904 2071 4.925861 GGAGAGCAGCCCATCGCC 62.926 72.222 0.00 0.00 38.78 5.54
1023 2192 1.528309 CACCGTGGAGGGTTTGCTT 60.528 57.895 0.00 0.00 46.96 3.91
1154 2331 7.746703 ACTAAAGTGACAGAGAATTAAAGGGT 58.253 34.615 0.00 0.00 0.00 4.34
1191 2369 6.873997 ACAGACACAGATAATCAATCCGTTA 58.126 36.000 0.00 0.00 34.90 3.18
1262 2441 4.817318 ACTGAAGATTCTTCCAGAGACC 57.183 45.455 20.87 0.00 33.02 3.85
1263 2442 5.175127 GGAACTGAAGATTCTTCCAGAGAC 58.825 45.833 20.87 11.99 33.83 3.36
1264 2443 4.081972 CGGAACTGAAGATTCTTCCAGAGA 60.082 45.833 20.87 4.03 33.46 3.10
1265 2444 4.180057 CGGAACTGAAGATTCTTCCAGAG 58.820 47.826 20.87 14.81 33.46 3.35
1266 2445 3.578716 ACGGAACTGAAGATTCTTCCAGA 59.421 43.478 20.87 4.68 33.46 3.86
1267 2446 3.681897 CACGGAACTGAAGATTCTTCCAG 59.318 47.826 20.87 18.75 33.46 3.86
1268 2447 3.071023 ACACGGAACTGAAGATTCTTCCA 59.929 43.478 20.87 10.10 33.46 3.53
1269 2448 3.665190 ACACGGAACTGAAGATTCTTCC 58.335 45.455 20.87 7.48 31.62 3.46
1270 2449 3.680458 GGACACGGAACTGAAGATTCTTC 59.320 47.826 17.76 17.76 0.00 2.87
1271 2450 3.325135 AGGACACGGAACTGAAGATTCTT 59.675 43.478 0.00 0.00 0.00 2.52
1272 2451 2.900546 AGGACACGGAACTGAAGATTCT 59.099 45.455 0.00 0.00 0.00 2.40
1273 2452 3.320673 AGGACACGGAACTGAAGATTC 57.679 47.619 0.00 0.00 0.00 2.52
1274 2453 3.771577 AAGGACACGGAACTGAAGATT 57.228 42.857 0.00 0.00 0.00 2.40
1275 2454 3.557264 GGAAAGGACACGGAACTGAAGAT 60.557 47.826 0.00 0.00 0.00 2.40
1276 2455 2.224209 GGAAAGGACACGGAACTGAAGA 60.224 50.000 0.00 0.00 0.00 2.87
1277 2456 2.143925 GGAAAGGACACGGAACTGAAG 58.856 52.381 0.00 0.00 0.00 3.02
1278 2457 1.487142 TGGAAAGGACACGGAACTGAA 59.513 47.619 0.00 0.00 0.00 3.02
1279 2458 1.124780 TGGAAAGGACACGGAACTGA 58.875 50.000 0.00 0.00 0.00 3.41
1280 2459 1.873591 CTTGGAAAGGACACGGAACTG 59.126 52.381 0.00 0.00 41.27 3.16
1281 2460 1.766496 TCTTGGAAAGGACACGGAACT 59.234 47.619 0.00 0.00 46.24 3.01
1306 2503 1.373435 CCGACAACCCAGCTTGGTA 59.627 57.895 10.40 0.00 37.76 3.25
1309 2506 3.726517 CGCCGACAACCCAGCTTG 61.727 66.667 0.00 0.00 0.00 4.01
1394 2591 5.948162 GGATATGCATAACCAAGATGGACAT 59.052 40.000 24.05 0.00 40.96 3.06
1428 2625 6.726764 AGATCACTAAAGTTTACAGAGGGAGT 59.273 38.462 0.00 0.00 0.00 3.85
1430 2627 8.660295 TTAGATCACTAAAGTTTACAGAGGGA 57.340 34.615 0.00 0.00 35.92 4.20
1434 2631 9.944376 AGCATTTAGATCACTAAAGTTTACAGA 57.056 29.630 0.00 0.00 46.97 3.41
1436 2633 9.944376 AGAGCATTTAGATCACTAAAGTTTACA 57.056 29.630 0.00 0.00 46.97 2.41
1454 2651 9.057089 CCTCCGTAAAGAAATATAAGAGCATTT 57.943 33.333 0.00 0.00 0.00 2.32
1455 2652 7.661847 CCCTCCGTAAAGAAATATAAGAGCATT 59.338 37.037 0.00 0.00 0.00 3.56
1456 2653 7.016268 TCCCTCCGTAAAGAAATATAAGAGCAT 59.984 37.037 0.00 0.00 0.00 3.79
1457 2654 6.325545 TCCCTCCGTAAAGAAATATAAGAGCA 59.674 38.462 0.00 0.00 0.00 4.26
1458 2655 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
1459 2656 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
1460 2657 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
1461 2658 8.858094 AGTACTCCCTCCGTAAAGAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
1462 2659 8.773033 AGTACTCCCTCCGTAAAGAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
1463 2660 9.866655 TTAGTACTCCCTCCGTAAAGAAATATA 57.133 33.333 0.00 0.00 0.00 0.86
1464 2661 8.773033 TTAGTACTCCCTCCGTAAAGAAATAT 57.227 34.615 0.00 0.00 0.00 1.28
1465 2662 7.201857 GCTTAGTACTCCCTCCGTAAAGAAATA 60.202 40.741 0.00 0.00 0.00 1.40
1466 2663 6.406737 GCTTAGTACTCCCTCCGTAAAGAAAT 60.407 42.308 0.00 0.00 0.00 2.17
1467 2664 5.105595 GCTTAGTACTCCCTCCGTAAAGAAA 60.106 44.000 0.00 0.00 0.00 2.52
1468 2665 4.400567 GCTTAGTACTCCCTCCGTAAAGAA 59.599 45.833 0.00 0.00 0.00 2.52
1469 2666 3.950395 GCTTAGTACTCCCTCCGTAAAGA 59.050 47.826 0.00 0.00 0.00 2.52
1470 2667 3.698040 TGCTTAGTACTCCCTCCGTAAAG 59.302 47.826 0.00 0.00 0.00 1.85
1471 2668 3.700538 TGCTTAGTACTCCCTCCGTAAA 58.299 45.455 0.00 0.00 0.00 2.01
1472 2669 3.370840 TGCTTAGTACTCCCTCCGTAA 57.629 47.619 0.00 0.00 0.00 3.18
1473 2670 3.370840 TTGCTTAGTACTCCCTCCGTA 57.629 47.619 0.00 0.00 0.00 4.02
1474 2671 2.226962 TTGCTTAGTACTCCCTCCGT 57.773 50.000 0.00 0.00 0.00 4.69
1475 2672 2.693591 TGATTGCTTAGTACTCCCTCCG 59.306 50.000 0.00 0.00 0.00 4.63
1476 2673 3.707102 AGTGATTGCTTAGTACTCCCTCC 59.293 47.826 0.00 0.00 0.00 4.30
1477 2674 5.010213 CCTAGTGATTGCTTAGTACTCCCTC 59.990 48.000 0.00 0.00 0.00 4.30
1478 2675 4.896482 CCTAGTGATTGCTTAGTACTCCCT 59.104 45.833 0.00 0.00 0.00 4.20
1479 2676 4.650131 ACCTAGTGATTGCTTAGTACTCCC 59.350 45.833 0.00 0.00 0.00 4.30
1480 2677 5.127356 ACACCTAGTGATTGCTTAGTACTCC 59.873 44.000 0.00 0.00 36.96 3.85
1481 2678 6.210287 ACACCTAGTGATTGCTTAGTACTC 57.790 41.667 0.00 0.00 36.96 2.59
1506 2703 1.582502 GACGACTGTACATTACTGCGC 59.417 52.381 0.00 0.00 33.85 6.09
1519 2716 2.668457 GTGCTAAACCAGATGACGACTG 59.332 50.000 0.00 0.00 35.43 3.51
1520 2717 2.960819 GTGCTAAACCAGATGACGACT 58.039 47.619 0.00 0.00 0.00 4.18
1568 2766 4.711846 ACACTCTAACATACTGCTCCATCA 59.288 41.667 0.00 0.00 0.00 3.07
1573 2771 3.304559 CGCAACACTCTAACATACTGCTC 59.695 47.826 0.00 0.00 0.00 4.26
1632 2832 6.281190 TGATCCTCTCTATTCCTCCTAACA 57.719 41.667 0.00 0.00 0.00 2.41
1636 2836 6.018469 CAGAATGATCCTCTCTATTCCTCCT 58.982 44.000 0.00 0.00 39.69 3.69
1638 2838 6.916360 ACAGAATGATCCTCTCTATTCCTC 57.084 41.667 0.00 0.00 39.69 3.71
1641 2841 7.593273 CGTACAACAGAATGATCCTCTCTATTC 59.407 40.741 0.00 0.00 39.69 1.75
1655 2855 2.028476 TGCTAGTGCCGTACAACAGAAT 60.028 45.455 0.00 0.00 38.71 2.40
1658 2858 1.790755 TTGCTAGTGCCGTACAACAG 58.209 50.000 0.00 0.00 38.71 3.16
1661 2861 4.069304 AGAAAATTGCTAGTGCCGTACAA 58.931 39.130 0.00 0.00 38.71 2.41
1662 2862 3.435327 CAGAAAATTGCTAGTGCCGTACA 59.565 43.478 0.00 0.00 38.71 2.90
1667 2869 4.243007 ACAACAGAAAATTGCTAGTGCC 57.757 40.909 0.00 0.00 38.71 5.01
1673 2875 8.088365 GGTAGGAAATTACAACAGAAAATTGCT 58.912 33.333 0.00 0.00 0.00 3.91
1677 2879 9.362151 TCTTGGTAGGAAATTACAACAGAAAAT 57.638 29.630 0.00 0.00 0.00 1.82
1698 2900 4.455877 GGCTCCAAATCCGTTATATCTTGG 59.544 45.833 0.00 0.00 35.65 3.61
1699 2901 4.455877 GGGCTCCAAATCCGTTATATCTTG 59.544 45.833 0.00 0.00 0.00 3.02
1709 2911 1.153086 CCTCAGGGCTCCAAATCCG 60.153 63.158 0.00 0.00 0.00 4.18
1710 2912 4.995594 CCTCAGGGCTCCAAATCC 57.004 61.111 0.00 0.00 0.00 3.01
1728 2930 2.620251 TTGATCAGCCACGGATAAGG 57.380 50.000 0.00 0.00 0.00 2.69
1732 2934 0.035152 TGCTTTGATCAGCCACGGAT 60.035 50.000 4.64 0.00 39.25 4.18
1735 2937 1.741706 AGAATGCTTTGATCAGCCACG 59.258 47.619 4.64 0.00 39.25 4.94
1736 2938 3.015327 AGAGAATGCTTTGATCAGCCAC 58.985 45.455 4.64 0.00 39.25 5.01
1749 2952 7.254727 GGAATTTCAGTCTACATCAGAGAATGC 60.255 40.741 0.00 0.00 38.57 3.56
1758 2961 5.104735 ACAGGAGGGAATTTCAGTCTACATC 60.105 44.000 0.00 0.00 0.00 3.06
1759 2962 4.785376 ACAGGAGGGAATTTCAGTCTACAT 59.215 41.667 0.00 0.00 0.00 2.29
1847 3069 1.699730 TCACGAACAGAAGAGGACCA 58.300 50.000 0.00 0.00 0.00 4.02
1850 3072 3.056536 CAGGATTCACGAACAGAAGAGGA 60.057 47.826 0.00 0.00 0.00 3.71
1853 3075 2.897326 TCCAGGATTCACGAACAGAAGA 59.103 45.455 0.00 0.00 0.00 2.87
1854 3076 3.257393 CTCCAGGATTCACGAACAGAAG 58.743 50.000 0.00 0.00 0.00 2.85
1865 3087 3.802866 CTCTTGGTAAGCTCCAGGATTC 58.197 50.000 6.71 0.00 41.51 2.52
1867 3089 1.488393 GCTCTTGGTAAGCTCCAGGAT 59.512 52.381 6.71 0.00 41.51 3.24
1868 3090 0.905357 GCTCTTGGTAAGCTCCAGGA 59.095 55.000 6.17 6.17 40.44 3.86
1871 3093 0.902984 TCGGCTCTTGGTAAGCTCCA 60.903 55.000 0.00 0.00 39.75 3.86
1874 3096 2.027192 TGATTTCGGCTCTTGGTAAGCT 60.027 45.455 0.00 0.00 39.75 3.74
1888 3110 3.171277 GTGCTTTTCGGGAATGATTTCG 58.829 45.455 0.00 0.00 32.28 3.46
1893 3115 1.582610 GCGGTGCTTTTCGGGAATGA 61.583 55.000 0.00 0.00 0.00 2.57
1895 3117 2.340328 GGCGGTGCTTTTCGGGAAT 61.340 57.895 0.00 0.00 0.00 3.01
1906 3128 0.170339 GTTAAATGGACTGGCGGTGC 59.830 55.000 11.47 11.47 36.78 5.01
1913 3135 6.016276 AGCCTAACAAGTTGTTAAATGGACTG 60.016 38.462 25.60 14.65 41.70 3.51
1914 3136 6.016276 CAGCCTAACAAGTTGTTAAATGGACT 60.016 38.462 25.60 20.21 41.70 3.85
1917 3139 4.923281 GCAGCCTAACAAGTTGTTAAATGG 59.077 41.667 24.70 22.40 41.70 3.16
1919 3141 5.782893 TGCAGCCTAACAAGTTGTTAAAT 57.217 34.783 24.70 13.33 41.70 1.40
1921 3143 5.782893 ATTGCAGCCTAACAAGTTGTTAA 57.217 34.783 24.70 13.36 41.70 2.01
1924 3146 3.188460 CGTATTGCAGCCTAACAAGTTGT 59.812 43.478 1.64 1.64 0.00 3.32
1928 3150 2.356135 ACCGTATTGCAGCCTAACAAG 58.644 47.619 0.00 0.00 0.00 3.16
1931 3153 2.486592 ACAAACCGTATTGCAGCCTAAC 59.513 45.455 0.00 0.00 33.52 2.34
1934 3156 2.290071 ACTACAAACCGTATTGCAGCCT 60.290 45.455 0.00 0.00 33.52 4.58
1937 3159 3.181524 CGGAACTACAAACCGTATTGCAG 60.182 47.826 0.00 0.00 41.47 4.41
1946 3168 2.064014 CCTTCGACGGAACTACAAACC 58.936 52.381 0.62 0.00 0.00 3.27
1947 3169 1.458445 GCCTTCGACGGAACTACAAAC 59.542 52.381 12.95 0.00 0.00 2.93
1966 3188 1.672881 GTGGCTTCTGTACATGATGGC 59.327 52.381 18.58 18.58 35.65 4.40
2112 3334 9.607285 ACGTAAACAAATTGTGATTGAGTATTC 57.393 29.630 0.00 0.00 0.00 1.75
2126 3348 7.332182 ACACAATGGTTCAAACGTAAACAAATT 59.668 29.630 9.66 6.68 0.00 1.82
2167 3389 6.498304 GTCCGATGAAGCATTAACATGAAAT 58.502 36.000 0.00 0.00 31.07 2.17
2285 3507 7.255381 CCAGTGAAGAATCTCAACAAGAAACAT 60.255 37.037 0.00 0.00 37.61 2.71
2288 3510 6.038603 CACCAGTGAAGAATCTCAACAAGAAA 59.961 38.462 0.00 0.00 37.61 2.52
2325 3557 7.201609 GGCGACATAATGATTACAGACAGAAAA 60.202 37.037 0.00 0.00 0.00 2.29
2326 3558 6.257849 GGCGACATAATGATTACAGACAGAAA 59.742 38.462 0.00 0.00 0.00 2.52
2450 3683 2.419297 GCCTTCGATCTTGACACCAGAT 60.419 50.000 0.00 0.00 0.00 2.90
2653 3890 7.715657 TCTCAAAAGAAATAGAGCAAAGCAAA 58.284 30.769 0.00 0.00 0.00 3.68
2662 3899 7.188157 GCATGCTCTTCTCAAAAGAAATAGAG 58.812 38.462 11.37 0.00 40.95 2.43
2665 3902 5.948162 AGGCATGCTCTTCTCAAAAGAAATA 59.052 36.000 18.92 0.00 40.95 1.40
2669 3906 3.430042 AGGCATGCTCTTCTCAAAAGA 57.570 42.857 18.92 0.00 0.00 2.52
2671 3908 4.942761 AAAAGGCATGCTCTTCTCAAAA 57.057 36.364 18.92 0.00 0.00 2.44
2673 3910 4.655963 AGTAAAAGGCATGCTCTTCTCAA 58.344 39.130 18.92 3.64 0.00 3.02
2674 3911 4.292186 AGTAAAAGGCATGCTCTTCTCA 57.708 40.909 18.92 5.53 0.00 3.27
2675 3912 5.414144 AGAAAGTAAAAGGCATGCTCTTCTC 59.586 40.000 18.92 11.93 0.00 2.87
2676 3913 5.320277 AGAAAGTAAAAGGCATGCTCTTCT 58.680 37.500 18.92 8.67 0.00 2.85
2677 3914 5.635417 AGAAAGTAAAAGGCATGCTCTTC 57.365 39.130 18.92 7.64 0.00 2.87
2678 3915 5.772169 AGAAGAAAGTAAAAGGCATGCTCTT 59.228 36.000 18.92 15.82 0.00 2.85
2679 3916 5.182760 CAGAAGAAAGTAAAAGGCATGCTCT 59.817 40.000 18.92 10.29 0.00 4.09
2680 3917 5.182001 TCAGAAGAAAGTAAAAGGCATGCTC 59.818 40.000 18.92 7.89 0.00 4.26
2681 3918 5.072741 TCAGAAGAAAGTAAAAGGCATGCT 58.927 37.500 18.92 0.00 0.00 3.79
2682 3919 5.376854 TCAGAAGAAAGTAAAAGGCATGC 57.623 39.130 9.90 9.90 0.00 4.06
2683 3920 7.754027 CAGATTCAGAAGAAAGTAAAAGGCATG 59.246 37.037 0.00 0.00 37.29 4.06
2684 3921 7.667219 TCAGATTCAGAAGAAAGTAAAAGGCAT 59.333 33.333 0.00 0.00 37.29 4.40
2685 3922 6.998074 TCAGATTCAGAAGAAAGTAAAAGGCA 59.002 34.615 0.00 0.00 37.29 4.75
2686 3923 7.440523 TCAGATTCAGAAGAAAGTAAAAGGC 57.559 36.000 0.00 0.00 37.29 4.35
2710 3947 8.353684 CAGACTTAATCTACCGACAGTCATTAT 58.646 37.037 0.41 0.00 35.15 1.28
2760 3999 9.757227 GGCTAGATGATACCATATATCAAACTC 57.243 37.037 0.00 0.00 37.47 3.01
2781 4020 0.962489 CATGTCCTCTACGGGGCTAG 59.038 60.000 0.00 0.00 0.00 3.42
2814 4054 1.202313 CCGAAGATCTCGTCAAGGGTC 60.202 57.143 0.00 0.00 46.65 4.46
2836 4076 5.765182 ACTTGAGATGAATGGAAACGAAACT 59.235 36.000 0.00 0.00 0.00 2.66
2852 4092 7.678947 AAAATTCATCGTTGAGACTTGAGAT 57.321 32.000 0.00 0.00 32.27 2.75
2872 4112 8.893563 TCCTTTACCTATGGTTCATGAAAAAT 57.106 30.769 10.35 9.31 37.09 1.82
2879 4119 4.227300 TGCACTCCTTTACCTATGGTTCAT 59.773 41.667 0.00 0.00 37.09 2.57
2881 4121 4.216411 TGCACTCCTTTACCTATGGTTC 57.784 45.455 0.00 0.00 37.09 3.62
2982 4225 1.079819 CAAGACATCCGCCGACACT 60.080 57.895 0.00 0.00 0.00 3.55
3051 4294 2.291800 ACTTTCTTACCATGCCATGCCT 60.292 45.455 0.00 0.00 0.00 4.75
3114 4360 8.453238 ACGGGACAGAGTGCTATATAATATAG 57.547 38.462 0.00 0.00 0.00 1.31
3117 4363 8.683615 CATTACGGGACAGAGTGCTATATAATA 58.316 37.037 0.00 0.00 0.00 0.98
3119 4365 6.492429 ACATTACGGGACAGAGTGCTATATAA 59.508 38.462 0.00 0.00 0.00 0.98
3123 4369 3.031736 ACATTACGGGACAGAGTGCTAT 58.968 45.455 0.00 0.00 0.00 2.97
3124 4370 2.453521 ACATTACGGGACAGAGTGCTA 58.546 47.619 0.00 0.00 0.00 3.49
3125 4371 1.267121 ACATTACGGGACAGAGTGCT 58.733 50.000 0.00 0.00 0.00 4.40
3126 4372 2.953466 TACATTACGGGACAGAGTGC 57.047 50.000 0.00 0.00 0.00 4.40
3127 4373 4.421948 GTCTTACATTACGGGACAGAGTG 58.578 47.826 0.00 0.00 0.00 3.51
3138 4391 3.998341 TGTCCAAAGGCGTCTTACATTAC 59.002 43.478 0.94 0.00 32.01 1.89
3143 4396 2.165319 AGTGTCCAAAGGCGTCTTAC 57.835 50.000 0.94 0.00 32.01 2.34
3149 4402 2.029290 ACTAGTGTAGTGTCCAAAGGCG 60.029 50.000 0.00 0.00 37.69 5.52
3186 4439 4.152284 ACTCCCTCCGTTCCATAATTTC 57.848 45.455 0.00 0.00 0.00 2.17
3188 4441 4.296056 AGTACTCCCTCCGTTCCATAATT 58.704 43.478 0.00 0.00 0.00 1.40
3193 4446 1.637553 AGTAGTACTCCCTCCGTTCCA 59.362 52.381 0.00 0.00 0.00 3.53
3196 4449 3.010584 TGGTAAGTAGTACTCCCTCCGTT 59.989 47.826 16.07 0.00 32.80 4.44
3197 4450 2.578021 TGGTAAGTAGTACTCCCTCCGT 59.422 50.000 16.07 0.00 32.80 4.69
3199 4452 3.952967 CAGTGGTAAGTAGTACTCCCTCC 59.047 52.174 16.07 11.12 32.80 4.30
3204 4457 6.674694 TTCGATCAGTGGTAAGTAGTACTC 57.325 41.667 2.58 0.00 32.80 2.59
3211 4464 4.625742 CGTTTGATTCGATCAGTGGTAAGT 59.374 41.667 0.00 0.00 40.94 2.24
3212 4465 4.492570 GCGTTTGATTCGATCAGTGGTAAG 60.493 45.833 0.00 0.00 40.94 2.34
3213 4466 3.369756 GCGTTTGATTCGATCAGTGGTAA 59.630 43.478 0.00 0.00 40.94 2.85
3215 4468 1.732259 GCGTTTGATTCGATCAGTGGT 59.268 47.619 0.00 0.00 40.94 4.16
3216 4469 1.267038 CGCGTTTGATTCGATCAGTGG 60.267 52.381 0.00 0.00 40.94 4.00
3217 4470 1.267038 CCGCGTTTGATTCGATCAGTG 60.267 52.381 4.92 0.00 40.94 3.66
3225 4478 1.193874 AGTTTCGTCCGCGTTTGATTC 59.806 47.619 4.92 0.00 39.49 2.52
3230 4483 1.561250 CGAAGTTTCGTCCGCGTTT 59.439 52.632 4.92 0.00 45.09 3.60
3251 4504 0.395586 TGTTTTCACTGGCAGCCTGT 60.396 50.000 18.00 18.00 36.11 4.00
3258 4511 1.142474 GCTGCAATGTTTTCACTGGC 58.858 50.000 0.00 0.00 0.00 4.85
3340 4593 6.522510 CGAACCTCTAACGTACTGAAAACTAG 59.477 42.308 0.00 0.00 0.00 2.57
3379 4632 6.813649 TCATTTGACTAGTTTCCAGAGATTCG 59.186 38.462 0.00 0.00 0.00 3.34
3408 4661 2.426024 CAGGCAAACCAATGAGGATCTG 59.574 50.000 0.00 0.00 41.22 2.90
3410 4663 1.753073 CCAGGCAAACCAATGAGGATC 59.247 52.381 0.00 0.00 41.22 3.36
3436 4689 4.938226 GCTGACTACCTGCAGAGTTAAAAT 59.062 41.667 17.39 0.00 39.25 1.82
3439 4692 2.233922 GGCTGACTACCTGCAGAGTTAA 59.766 50.000 17.39 3.73 40.95 2.01
3440 4693 1.825474 GGCTGACTACCTGCAGAGTTA 59.175 52.381 17.39 7.58 40.95 2.24
3448 4701 0.107017 CATTGGGGGCTGACTACCTG 60.107 60.000 0.00 0.00 0.00 4.00
3541 4794 1.198094 TCGTCCCTGGCTTTGGATGA 61.198 55.000 7.91 7.91 42.88 2.92
3698 4955 3.063997 GGTGTAGCAAGCACATACATGTC 59.936 47.826 0.00 0.00 39.39 3.06
3764 5043 1.884235 AACGCCAGAAAGACCAAGAG 58.116 50.000 0.00 0.00 0.00 2.85
3797 5076 6.998968 AAGGAGAAATGAAGTAATCTGCTG 57.001 37.500 0.00 0.00 39.31 4.41
3855 5134 9.719355 AACAAAGTTTGACTTTAACCAAATCTT 57.281 25.926 22.23 0.00 45.84 2.40
3859 5138 9.984190 AGTTAACAAAGTTTGACTTTAACCAAA 57.016 25.926 22.23 0.00 45.84 3.28
3860 5139 9.984190 AAGTTAACAAAGTTTGACTTTAACCAA 57.016 25.926 22.23 0.00 45.84 3.67
3861 5140 9.984190 AAAGTTAACAAAGTTTGACTTTAACCA 57.016 25.926 22.63 0.15 45.84 3.67
3925 5204 9.851686 TGATGCACCTAAAAGTATTGATTCTAT 57.148 29.630 0.00 0.00 0.00 1.98
3926 5205 9.851686 ATGATGCACCTAAAAGTATTGATTCTA 57.148 29.630 0.00 0.00 0.00 2.10
3927 5206 8.627403 CATGATGCACCTAAAAGTATTGATTCT 58.373 33.333 0.00 0.00 0.00 2.40
3928 5207 8.623903 TCATGATGCACCTAAAAGTATTGATTC 58.376 33.333 0.00 0.00 0.00 2.52
3929 5208 8.523915 TCATGATGCACCTAAAAGTATTGATT 57.476 30.769 0.00 0.00 0.00 2.57
3930 5209 8.523915 TTCATGATGCACCTAAAAGTATTGAT 57.476 30.769 0.00 0.00 0.00 2.57
3931 5210 7.936496 TTCATGATGCACCTAAAAGTATTGA 57.064 32.000 0.00 0.00 0.00 2.57
3932 5211 9.590451 AATTTCATGATGCACCTAAAAGTATTG 57.410 29.630 0.00 0.00 0.00 1.90
3974 5253 9.982651 AATATCAACATCTACAATACTAACGCT 57.017 29.630 0.00 0.00 0.00 5.07
4023 5302 6.114221 TGGTCGAAGTCAAACTTTGTAAAG 57.886 37.500 6.90 2.94 38.80 1.85
4024 5303 6.497785 TTGGTCGAAGTCAAACTTTGTAAA 57.502 33.333 6.90 0.00 38.80 2.01
4025 5304 6.497785 TTTGGTCGAAGTCAAACTTTGTAA 57.502 33.333 6.90 0.77 38.80 2.41
4026 5305 6.540914 AGATTTGGTCGAAGTCAAACTTTGTA 59.459 34.615 10.62 0.00 38.80 2.41
4027 5306 5.357032 AGATTTGGTCGAAGTCAAACTTTGT 59.643 36.000 10.62 0.00 38.80 2.83
4028 5307 5.821204 AGATTTGGTCGAAGTCAAACTTTG 58.179 37.500 10.62 1.34 38.80 2.77
4029 5308 6.451064 AAGATTTGGTCGAAGTCAAACTTT 57.549 33.333 10.62 6.91 38.80 2.66
4030 5309 7.745620 ATAAGATTTGGTCGAAGTCAAACTT 57.254 32.000 10.62 14.89 41.95 2.66
4031 5310 8.883731 CATATAAGATTTGGTCGAAGTCAAACT 58.116 33.333 10.62 8.26 35.59 2.66
4032 5311 7.640240 GCATATAAGATTTGGTCGAAGTCAAAC 59.360 37.037 10.62 6.73 35.59 2.93
4033 5312 7.335673 TGCATATAAGATTTGGTCGAAGTCAAA 59.664 33.333 10.75 10.75 36.61 2.69
4034 5313 6.821160 TGCATATAAGATTTGGTCGAAGTCAA 59.179 34.615 0.00 0.00 0.00 3.18
4035 5314 6.345298 TGCATATAAGATTTGGTCGAAGTCA 58.655 36.000 0.00 0.00 0.00 3.41
4036 5315 6.844696 TGCATATAAGATTTGGTCGAAGTC 57.155 37.500 0.00 0.00 0.00 3.01
4037 5316 7.336931 AGTTTGCATATAAGATTTGGTCGAAGT 59.663 33.333 0.00 0.00 0.00 3.01
4038 5317 7.697691 AGTTTGCATATAAGATTTGGTCGAAG 58.302 34.615 0.00 0.00 0.00 3.79
4039 5318 7.624360 AGTTTGCATATAAGATTTGGTCGAA 57.376 32.000 0.00 0.00 0.00 3.71
4040 5319 8.725405 TTAGTTTGCATATAAGATTTGGTCGA 57.275 30.769 0.00 0.00 0.00 4.20
4041 5320 9.781834 TTTTAGTTTGCATATAAGATTTGGTCG 57.218 29.630 0.00 0.00 0.00 4.79
4049 5328 9.834628 CCGTTTCTTTTTAGTTTGCATATAAGA 57.165 29.630 0.00 0.00 0.00 2.10
4050 5329 9.834628 TCCGTTTCTTTTTAGTTTGCATATAAG 57.165 29.630 0.00 0.00 0.00 1.73
4051 5330 9.834628 CTCCGTTTCTTTTTAGTTTGCATATAA 57.165 29.630 0.00 0.00 0.00 0.98
4052 5331 8.455682 CCTCCGTTTCTTTTTAGTTTGCATATA 58.544 33.333 0.00 0.00 0.00 0.86
4053 5332 7.312899 CCTCCGTTTCTTTTTAGTTTGCATAT 58.687 34.615 0.00 0.00 0.00 1.78
4054 5333 6.294286 CCCTCCGTTTCTTTTTAGTTTGCATA 60.294 38.462 0.00 0.00 0.00 3.14
4055 5334 5.508994 CCCTCCGTTTCTTTTTAGTTTGCAT 60.509 40.000 0.00 0.00 0.00 3.96
4056 5335 4.202070 CCCTCCGTTTCTTTTTAGTTTGCA 60.202 41.667 0.00 0.00 0.00 4.08
4057 5336 4.037089 TCCCTCCGTTTCTTTTTAGTTTGC 59.963 41.667 0.00 0.00 0.00 3.68
4058 5337 5.298527 ACTCCCTCCGTTTCTTTTTAGTTTG 59.701 40.000 0.00 0.00 0.00 2.93
4059 5338 5.443283 ACTCCCTCCGTTTCTTTTTAGTTT 58.557 37.500 0.00 0.00 0.00 2.66
4060 5339 5.045012 ACTCCCTCCGTTTCTTTTTAGTT 57.955 39.130 0.00 0.00 0.00 2.24
4061 5340 4.701651 ACTCCCTCCGTTTCTTTTTAGT 57.298 40.909 0.00 0.00 0.00 2.24
4062 5341 5.544650 TGTACTCCCTCCGTTTCTTTTTAG 58.455 41.667 0.00 0.00 0.00 1.85
4063 5342 5.549742 TGTACTCCCTCCGTTTCTTTTTA 57.450 39.130 0.00 0.00 0.00 1.52
4064 5343 4.426736 TGTACTCCCTCCGTTTCTTTTT 57.573 40.909 0.00 0.00 0.00 1.94
4065 5344 4.426736 TTGTACTCCCTCCGTTTCTTTT 57.573 40.909 0.00 0.00 0.00 2.27
4066 5345 4.426736 TTTGTACTCCCTCCGTTTCTTT 57.573 40.909 0.00 0.00 0.00 2.52
4067 5346 4.132336 GTTTTGTACTCCCTCCGTTTCTT 58.868 43.478 0.00 0.00 0.00 2.52
4068 5347 3.135167 TGTTTTGTACTCCCTCCGTTTCT 59.865 43.478 0.00 0.00 0.00 2.52
4069 5348 3.469739 TGTTTTGTACTCCCTCCGTTTC 58.530 45.455 0.00 0.00 0.00 2.78
4070 5349 3.564053 TGTTTTGTACTCCCTCCGTTT 57.436 42.857 0.00 0.00 0.00 3.60
4071 5350 3.564053 TTGTTTTGTACTCCCTCCGTT 57.436 42.857 0.00 0.00 0.00 4.44
4072 5351 3.564053 TTTGTTTTGTACTCCCTCCGT 57.436 42.857 0.00 0.00 0.00 4.69
4073 5352 3.190535 CCATTTGTTTTGTACTCCCTCCG 59.809 47.826 0.00 0.00 0.00 4.63
4074 5353 3.509967 CCCATTTGTTTTGTACTCCCTCC 59.490 47.826 0.00 0.00 0.00 4.30
4075 5354 4.149598 ACCCATTTGTTTTGTACTCCCTC 58.850 43.478 0.00 0.00 0.00 4.30
4076 5355 4.193240 ACCCATTTGTTTTGTACTCCCT 57.807 40.909 0.00 0.00 0.00 4.20
4077 5356 4.342665 TGAACCCATTTGTTTTGTACTCCC 59.657 41.667 0.00 0.00 0.00 4.30
4078 5357 5.163499 TGTGAACCCATTTGTTTTGTACTCC 60.163 40.000 0.00 0.00 0.00 3.85
4079 5358 5.897050 TGTGAACCCATTTGTTTTGTACTC 58.103 37.500 0.00 0.00 0.00 2.59
4080 5359 5.923733 TGTGAACCCATTTGTTTTGTACT 57.076 34.783 0.00 0.00 0.00 2.73
4081 5360 7.923878 AGTATTGTGAACCCATTTGTTTTGTAC 59.076 33.333 0.00 0.00 0.00 2.90
4082 5361 8.012957 AGTATTGTGAACCCATTTGTTTTGTA 57.987 30.769 0.00 0.00 0.00 2.41
4083 5362 6.883744 AGTATTGTGAACCCATTTGTTTTGT 58.116 32.000 0.00 0.00 0.00 2.83
4084 5363 7.629130 CAAGTATTGTGAACCCATTTGTTTTG 58.371 34.615 0.00 0.00 42.34 2.44
4138 5417 1.067582 CCTCCATACCGAACGGAGC 59.932 63.158 20.14 0.00 44.24 4.70
4139 5418 1.067212 CTTCCTCCATACCGAACGGAG 59.933 57.143 20.14 6.13 45.02 4.63
4140 5419 1.108776 CTTCCTCCATACCGAACGGA 58.891 55.000 20.14 4.23 38.96 4.69
4141 5420 1.067212 CTCTTCCTCCATACCGAACGG 59.933 57.143 11.83 11.83 42.03 4.44
4142 5421 2.022195 TCTCTTCCTCCATACCGAACG 58.978 52.381 0.00 0.00 0.00 3.95
4143 5422 4.467198 TTTCTCTTCCTCCATACCGAAC 57.533 45.455 0.00 0.00 0.00 3.95
4144 5423 4.619863 CGTTTTCTCTTCCTCCATACCGAA 60.620 45.833 0.00 0.00 0.00 4.30
4145 5424 3.119245 CGTTTTCTCTTCCTCCATACCGA 60.119 47.826 0.00 0.00 0.00 4.69
4146 5425 3.119245 TCGTTTTCTCTTCCTCCATACCG 60.119 47.826 0.00 0.00 0.00 4.02
4147 5426 4.467198 TCGTTTTCTCTTCCTCCATACC 57.533 45.455 0.00 0.00 0.00 2.73
4148 5427 4.870991 CCTTCGTTTTCTCTTCCTCCATAC 59.129 45.833 0.00 0.00 0.00 2.39
4149 5428 4.775780 TCCTTCGTTTTCTCTTCCTCCATA 59.224 41.667 0.00 0.00 0.00 2.74
4150 5429 3.583086 TCCTTCGTTTTCTCTTCCTCCAT 59.417 43.478 0.00 0.00 0.00 3.41
4151 5430 2.969950 TCCTTCGTTTTCTCTTCCTCCA 59.030 45.455 0.00 0.00 0.00 3.86
4152 5431 3.679824 TCCTTCGTTTTCTCTTCCTCC 57.320 47.619 0.00 0.00 0.00 4.30
4153 5432 6.373186 TTTTTCCTTCGTTTTCTCTTCCTC 57.627 37.500 0.00 0.00 0.00 3.71
4173 5452 2.348660 TGTTCCTGTGACGTCGTTTTT 58.651 42.857 11.62 0.00 0.00 1.94
4174 5453 2.012937 TGTTCCTGTGACGTCGTTTT 57.987 45.000 11.62 0.00 0.00 2.43
4175 5454 1.931172 CTTGTTCCTGTGACGTCGTTT 59.069 47.619 11.62 0.00 0.00 3.60
4176 5455 1.567504 CTTGTTCCTGTGACGTCGTT 58.432 50.000 11.62 0.00 0.00 3.85
4177 5456 0.249322 CCTTGTTCCTGTGACGTCGT 60.249 55.000 11.62 0.00 0.00 4.34
4178 5457 0.249322 ACCTTGTTCCTGTGACGTCG 60.249 55.000 11.62 0.00 0.00 5.12
4179 5458 1.949465 AACCTTGTTCCTGTGACGTC 58.051 50.000 9.11 9.11 0.00 4.34
4180 5459 2.014128 CAAACCTTGTTCCTGTGACGT 58.986 47.619 0.00 0.00 0.00 4.34
4181 5460 2.285083 TCAAACCTTGTTCCTGTGACG 58.715 47.619 0.00 0.00 0.00 4.35
4182 5461 3.882888 TCATCAAACCTTGTTCCTGTGAC 59.117 43.478 0.00 0.00 0.00 3.67
4183 5462 4.163441 TCATCAAACCTTGTTCCTGTGA 57.837 40.909 0.00 0.00 0.00 3.58
4184 5463 4.097741 TGTTCATCAAACCTTGTTCCTGTG 59.902 41.667 0.00 0.00 37.03 3.66
4185 5464 4.277476 TGTTCATCAAACCTTGTTCCTGT 58.723 39.130 0.00 0.00 37.03 4.00
4186 5465 4.339247 ACTGTTCATCAAACCTTGTTCCTG 59.661 41.667 0.00 0.00 37.03 3.86
4187 5466 4.536765 ACTGTTCATCAAACCTTGTTCCT 58.463 39.130 0.00 0.00 37.03 3.36
4188 5467 4.918810 ACTGTTCATCAAACCTTGTTCC 57.081 40.909 0.00 0.00 37.03 3.62
4189 5468 6.371809 TGTACTGTTCATCAAACCTTGTTC 57.628 37.500 0.00 0.00 37.03 3.18
4190 5469 6.767524 TTGTACTGTTCATCAAACCTTGTT 57.232 33.333 0.00 0.00 37.03 2.83
4191 5470 6.151985 TGTTTGTACTGTTCATCAAACCTTGT 59.848 34.615 18.15 0.00 44.78 3.16
4192 5471 6.559810 TGTTTGTACTGTTCATCAAACCTTG 58.440 36.000 18.15 0.00 44.78 3.61
4193 5472 6.767524 TGTTTGTACTGTTCATCAAACCTT 57.232 33.333 18.15 0.00 44.78 3.50
4194 5473 6.959639 ATGTTTGTACTGTTCATCAAACCT 57.040 33.333 18.15 11.47 44.78 3.50
4195 5474 7.754924 CCATATGTTTGTACTGTTCATCAAACC 59.245 37.037 18.15 8.72 44.78 3.27
4196 5475 8.511321 TCCATATGTTTGTACTGTTCATCAAAC 58.489 33.333 16.06 16.06 45.26 2.93
4197 5476 8.628630 TCCATATGTTTGTACTGTTCATCAAA 57.371 30.769 1.24 0.00 0.00 2.69
4198 5477 8.628630 TTCCATATGTTTGTACTGTTCATCAA 57.371 30.769 1.24 0.00 0.00 2.57
4199 5478 8.806429 ATTCCATATGTTTGTACTGTTCATCA 57.194 30.769 1.24 0.00 0.00 3.07
4200 5479 9.113838 AGATTCCATATGTTTGTACTGTTCATC 57.886 33.333 1.24 0.00 0.00 2.92
4201 5480 8.896744 CAGATTCCATATGTTTGTACTGTTCAT 58.103 33.333 1.24 0.00 0.00 2.57
4202 5481 8.100164 TCAGATTCCATATGTTTGTACTGTTCA 58.900 33.333 1.24 0.00 0.00 3.18
4203 5482 8.492673 TCAGATTCCATATGTTTGTACTGTTC 57.507 34.615 1.24 0.00 0.00 3.18
4204 5483 8.862325 TTCAGATTCCATATGTTTGTACTGTT 57.138 30.769 1.24 0.00 0.00 3.16
4205 5484 8.862325 TTTCAGATTCCATATGTTTGTACTGT 57.138 30.769 1.24 0.00 0.00 3.55
4206 5485 9.559958 GTTTTCAGATTCCATATGTTTGTACTG 57.440 33.333 1.24 4.22 0.00 2.74
4207 5486 8.450964 CGTTTTCAGATTCCATATGTTTGTACT 58.549 33.333 1.24 0.00 0.00 2.73
4208 5487 8.234546 ACGTTTTCAGATTCCATATGTTTGTAC 58.765 33.333 1.24 0.00 0.00 2.90
4209 5488 8.330466 ACGTTTTCAGATTCCATATGTTTGTA 57.670 30.769 1.24 0.00 0.00 2.41
4210 5489 7.214467 ACGTTTTCAGATTCCATATGTTTGT 57.786 32.000 1.24 0.00 0.00 2.83
4211 5490 7.910162 CCTACGTTTTCAGATTCCATATGTTTG 59.090 37.037 0.00 0.00 0.00 2.93
4212 5491 7.827236 TCCTACGTTTTCAGATTCCATATGTTT 59.173 33.333 0.00 0.00 0.00 2.83
4213 5492 7.335627 TCCTACGTTTTCAGATTCCATATGTT 58.664 34.615 0.00 0.00 0.00 2.71
4214 5493 6.884832 TCCTACGTTTTCAGATTCCATATGT 58.115 36.000 0.00 0.00 0.00 2.29
4215 5494 7.254795 GGTTCCTACGTTTTCAGATTCCATATG 60.255 40.741 0.00 0.00 0.00 1.78
4216 5495 6.766467 GGTTCCTACGTTTTCAGATTCCATAT 59.234 38.462 0.00 0.00 0.00 1.78
4217 5496 6.110707 GGTTCCTACGTTTTCAGATTCCATA 58.889 40.000 0.00 0.00 0.00 2.74
4218 5497 4.941873 GGTTCCTACGTTTTCAGATTCCAT 59.058 41.667 0.00 0.00 0.00 3.41
4219 5498 4.202377 TGGTTCCTACGTTTTCAGATTCCA 60.202 41.667 0.00 0.00 0.00 3.53
4220 5499 4.320870 TGGTTCCTACGTTTTCAGATTCC 58.679 43.478 0.00 0.00 0.00 3.01
4221 5500 4.392138 CCTGGTTCCTACGTTTTCAGATTC 59.608 45.833 0.00 0.00 0.00 2.52
4222 5501 4.041198 TCCTGGTTCCTACGTTTTCAGATT 59.959 41.667 0.00 0.00 0.00 2.40
4223 5502 3.581332 TCCTGGTTCCTACGTTTTCAGAT 59.419 43.478 0.00 0.00 0.00 2.90
4224 5503 2.967201 TCCTGGTTCCTACGTTTTCAGA 59.033 45.455 0.00 0.00 0.00 3.27
4225 5504 3.396260 TCCTGGTTCCTACGTTTTCAG 57.604 47.619 0.00 0.00 0.00 3.02
4226 5505 3.735591 CTTCCTGGTTCCTACGTTTTCA 58.264 45.455 0.00 0.00 0.00 2.69
4227 5506 2.483106 GCTTCCTGGTTCCTACGTTTTC 59.517 50.000 0.00 0.00 0.00 2.29
4228 5507 2.501261 GCTTCCTGGTTCCTACGTTTT 58.499 47.619 0.00 0.00 0.00 2.43
4229 5508 1.607251 CGCTTCCTGGTTCCTACGTTT 60.607 52.381 0.00 0.00 0.00 3.60
4230 5509 0.037605 CGCTTCCTGGTTCCTACGTT 60.038 55.000 0.00 0.00 0.00 3.99
4231 5510 1.183676 ACGCTTCCTGGTTCCTACGT 61.184 55.000 0.00 0.00 0.00 3.57
4232 5511 0.736325 CACGCTTCCTGGTTCCTACG 60.736 60.000 0.00 0.00 0.00 3.51
4233 5512 0.320697 ACACGCTTCCTGGTTCCTAC 59.679 55.000 0.00 0.00 0.00 3.18
4234 5513 1.053424 AACACGCTTCCTGGTTCCTA 58.947 50.000 0.00 0.00 0.00 2.94
4235 5514 0.535102 CAACACGCTTCCTGGTTCCT 60.535 55.000 0.00 0.00 0.00 3.36
4236 5515 1.515521 CCAACACGCTTCCTGGTTCC 61.516 60.000 0.00 0.00 0.00 3.62
4237 5516 1.949257 CCAACACGCTTCCTGGTTC 59.051 57.895 0.00 0.00 0.00 3.62
4238 5517 2.193536 GCCAACACGCTTCCTGGTT 61.194 57.895 0.00 0.00 0.00 3.67
4239 5518 2.594592 GCCAACACGCTTCCTGGT 60.595 61.111 0.00 0.00 0.00 4.00
4240 5519 2.281761 AGCCAACACGCTTCCTGG 60.282 61.111 0.00 0.00 34.73 4.45
4241 5520 1.447317 AACAGCCAACACGCTTCCTG 61.447 55.000 0.00 0.00 36.82 3.86
4242 5521 0.751643 AAACAGCCAACACGCTTCCT 60.752 50.000 0.00 0.00 36.82 3.36
4243 5522 0.102300 AAAACAGCCAACACGCTTCC 59.898 50.000 0.00 0.00 36.82 3.46
4244 5523 2.223386 TGTAAAACAGCCAACACGCTTC 60.223 45.455 0.00 0.00 36.82 3.86
4245 5524 1.746220 TGTAAAACAGCCAACACGCTT 59.254 42.857 0.00 0.00 36.82 4.68
4246 5525 1.384525 TGTAAAACAGCCAACACGCT 58.615 45.000 0.00 0.00 40.65 5.07
4247 5526 2.196295 TTGTAAAACAGCCAACACGC 57.804 45.000 0.00 0.00 0.00 5.34
4254 5533 5.006261 GGACATTGTTGTTTGTAAAACAGCC 59.994 40.000 14.48 7.22 37.57 4.85
4273 5552 3.825328 ACTTTGCAAGACAGAAGGACAT 58.175 40.909 0.00 0.00 0.00 3.06
4299 5578 3.122948 GTGAACGGTACACTACATGCAAG 59.877 47.826 0.00 0.00 35.66 4.01
4316 5596 7.755373 GGTATTTATTGCTCCTCTTTTGTGAAC 59.245 37.037 0.00 0.00 0.00 3.18
4345 5625 8.050778 ACTCTGTTTACAGTGTCAAAATTTCA 57.949 30.769 10.81 0.00 44.48 2.69
4376 5656 5.402630 ACTGGGTATGGAGGAAAATTTTGT 58.597 37.500 8.47 0.00 0.00 2.83
4381 5661 4.079958 GTGGTACTGGGTATGGAGGAAAAT 60.080 45.833 0.00 0.00 0.00 1.82
4388 5668 0.418245 TGGGTGGTACTGGGTATGGA 59.582 55.000 0.00 0.00 0.00 3.41
4396 5676 5.560722 TGGTAATATCATGGGTGGTACTG 57.439 43.478 0.00 0.00 0.00 2.74
4404 5684 5.278463 CCGAAAAGCTTGGTAATATCATGGG 60.278 44.000 0.00 0.00 0.00 4.00
4435 5715 0.850100 TGGGGGTGTGATTTGTGTCT 59.150 50.000 0.00 0.00 0.00 3.41
4478 5761 3.432608 GGGCTAATGGCTTGCAATGAAAT 60.433 43.478 0.00 0.00 41.46 2.17
4509 5792 0.544357 ATCACGTCTTGGTCCAGGGA 60.544 55.000 0.38 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.