Multiple sequence alignment - TraesCS5D01G390700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G390700 chr5D 100.000 3865 0 0 1 3865 459081861 459085725 0.000000e+00 7138
1 TraesCS5D01G390700 chr5B 87.722 3038 216 85 3 2951 563149619 563152588 0.000000e+00 3398
2 TraesCS5D01G390700 chr5B 89.474 494 35 6 3374 3863 563152615 563153095 3.300000e-170 608
3 TraesCS5D01G390700 chr5A 89.490 2512 147 63 476 2951 578064289 578066719 0.000000e+00 3068
4 TraesCS5D01G390700 chr5A 90.143 558 31 13 3313 3865 578066711 578067249 0.000000e+00 704
5 TraesCS5D01G390700 chr2D 96.429 364 10 2 2952 3312 645055666 645056029 7.150000e-167 597
6 TraesCS5D01G390700 chr2D 95.380 368 14 2 2952 3316 600400539 600400906 2.000000e-162 582
7 TraesCS5D01G390700 chr2D 96.108 334 10 2 2982 3312 194185444 194185111 3.400000e-150 542
8 TraesCS5D01G390700 chr2D 94.602 352 16 2 2963 3311 620158243 620158594 3.400000e-150 542
9 TraesCS5D01G390700 chr4D 96.317 353 10 2 2963 3312 479368277 479368629 9.310000e-161 577
10 TraesCS5D01G390700 chr4D 90.411 365 29 6 2952 3312 81922071 81922433 3.490000e-130 475
11 TraesCS5D01G390700 chr6D 95.402 348 12 3 2952 3296 80605473 80605127 5.640000e-153 551
12 TraesCS5D01G390700 chr1B 93.973 365 18 3 2951 3312 32453996 32454359 2.030000e-152 549
13 TraesCS5D01G390700 chr2B 93.681 364 19 3 2952 3312 673594971 673595333 3.400000e-150 542


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G390700 chr5D 459081861 459085725 3864 False 7138 7138 100.0000 1 3865 1 chr5D.!!$F1 3864
1 TraesCS5D01G390700 chr5B 563149619 563153095 3476 False 2003 3398 88.5980 3 3863 2 chr5B.!!$F1 3860
2 TraesCS5D01G390700 chr5A 578064289 578067249 2960 False 1886 3068 89.8165 476 3865 2 chr5A.!!$F1 3389

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
215 219 0.033405 CGAACTCCTGAGGGGTAGGA 60.033 60.0 3.43 0.0 41.91 2.94 F
330 335 0.251916 AGGCACTGGCTTATACGCAA 59.748 50.0 3.39 0.0 37.18 4.85 F
1674 1787 0.033504 TCAAGGTGCAGTTCGAGGTC 59.966 55.0 0.00 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1430 1505 0.027979 CGCGGACGGTCGAAGTAATA 59.972 55.0 0.00 0.00 34.97 0.98 R
1718 1831 1.099879 ATTCATGCTCTTGAGGCGCC 61.100 55.0 21.89 21.89 0.00 6.53 R
3215 3341 0.030235 GACCTTTTTGTGTGACGCCC 59.970 55.0 0.00 0.00 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 3.077359 CCTCGTTTGCTCAATCCTCTTT 58.923 45.455 0.00 0.00 0.00 2.52
47 48 6.663093 TGCTCAATCCTCTTTTGGCTATTTTA 59.337 34.615 0.00 0.00 0.00 1.52
48 49 7.148018 TGCTCAATCCTCTTTTGGCTATTTTAG 60.148 37.037 0.00 0.00 0.00 1.85
49 50 7.148000 GCTCAATCCTCTTTTGGCTATTTTAGT 60.148 37.037 0.00 0.00 0.00 2.24
50 51 9.396022 CTCAATCCTCTTTTGGCTATTTTAGTA 57.604 33.333 0.00 0.00 0.00 1.82
64 68 8.504815 GGCTATTTTAGTAGTATTTGCTTAGCC 58.495 37.037 0.29 0.00 37.22 3.93
87 91 6.126409 CCCTTATTGCCCACTTTTGTATCTA 58.874 40.000 0.00 0.00 0.00 1.98
141 145 2.327568 GCAACATTGTTCATGAACCGG 58.672 47.619 30.66 22.43 40.46 5.28
175 179 5.470098 CAGTGTTGTTATATGGGATGGTAGC 59.530 44.000 0.00 0.00 0.00 3.58
176 180 5.131977 AGTGTTGTTATATGGGATGGTAGCA 59.868 40.000 0.00 0.00 0.00 3.49
177 181 5.470098 GTGTTGTTATATGGGATGGTAGCAG 59.530 44.000 0.00 0.00 0.00 4.24
178 182 5.131977 TGTTGTTATATGGGATGGTAGCAGT 59.868 40.000 0.00 0.00 0.00 4.40
182 186 6.545666 TGTTATATGGGATGGTAGCAGTTTTG 59.454 38.462 0.00 0.00 0.00 2.44
209 213 3.618690 AAAATCTCGAACTCCTGAGGG 57.381 47.619 0.00 0.00 33.00 4.30
210 214 1.490574 AATCTCGAACTCCTGAGGGG 58.509 55.000 0.00 0.00 33.00 4.79
215 219 0.033405 CGAACTCCTGAGGGGTAGGA 60.033 60.000 3.43 0.00 41.91 2.94
243 247 5.227152 CGAAGGAAGTTTTAAAACCCATGG 58.773 41.667 24.06 4.14 39.71 3.66
273 277 8.947940 GCGCTTTCAATTTATATTCAGTGTAAG 58.052 33.333 0.00 0.00 0.00 2.34
289 294 4.272748 AGTGTAAGAAAGTTCAAGAACGGC 59.727 41.667 7.25 1.93 45.50 5.68
302 307 4.766404 AAGAACGGCGAAAATCTTGATT 57.234 36.364 16.62 0.00 31.25 2.57
304 309 5.121221 AGAACGGCGAAAATCTTGATTTT 57.879 34.783 16.62 17.87 36.54 1.82
305 310 5.528870 AGAACGGCGAAAATCTTGATTTTT 58.471 33.333 16.62 5.73 34.24 1.94
322 327 2.080654 TTTTGGTTAGGCACTGGCTT 57.919 45.000 10.87 0.00 41.52 4.35
323 328 2.961531 TTTGGTTAGGCACTGGCTTA 57.038 45.000 10.87 0.00 41.52 3.09
324 329 3.449746 TTTGGTTAGGCACTGGCTTAT 57.550 42.857 10.87 0.00 41.52 1.73
325 330 4.577988 TTTGGTTAGGCACTGGCTTATA 57.422 40.909 10.87 0.00 41.52 0.98
326 331 3.553828 TGGTTAGGCACTGGCTTATAC 57.446 47.619 10.87 6.98 41.52 1.47
327 332 2.159014 TGGTTAGGCACTGGCTTATACG 60.159 50.000 10.87 0.00 41.52 3.06
329 334 1.116308 TAGGCACTGGCTTATACGCA 58.884 50.000 10.87 0.00 41.52 5.24
330 335 0.251916 AGGCACTGGCTTATACGCAA 59.748 50.000 3.39 0.00 37.18 4.85
337 350 2.014128 TGGCTTATACGCAAGGAAAGC 58.986 47.619 3.39 0.00 44.49 3.51
353 366 0.980231 AAGCCAAAGCCAAACACCCA 60.980 50.000 0.00 0.00 41.25 4.51
354 367 1.069596 GCCAAAGCCAAACACCCAG 59.930 57.895 0.00 0.00 0.00 4.45
363 376 3.329520 AGCCAAACACCCAGTGAGTATAA 59.670 43.478 0.96 0.00 36.96 0.98
372 385 5.872617 CACCCAGTGAGTATAAATTTCACGA 59.127 40.000 0.00 0.00 44.45 4.35
394 407 7.926555 CACGAAATTATAGAGGTCAACATAGGT 59.073 37.037 0.00 0.00 0.00 3.08
395 408 8.483758 ACGAAATTATAGAGGTCAACATAGGTT 58.516 33.333 0.00 0.00 37.87 3.50
396 409 9.326413 CGAAATTATAGAGGTCAACATAGGTTT 57.674 33.333 0.00 0.00 34.21 3.27
403 416 7.179076 AGAGGTCAACATAGGTTTATACGTT 57.821 36.000 0.00 0.00 34.21 3.99
474 492 2.983592 GGTGCTGTTTGGGACGGG 60.984 66.667 0.00 0.00 35.05 5.28
488 506 1.135170 GGACGGGAGAAGTTAAGACGG 60.135 57.143 0.00 0.00 0.00 4.79
500 518 2.523184 TAAGACGGACGCTCGCTGTG 62.523 60.000 0.00 0.00 0.00 3.66
501 519 4.400109 GACGGACGCTCGCTGTGA 62.400 66.667 0.00 0.00 0.00 3.58
615 660 3.423154 GCGTGGAACCTTCTGCGG 61.423 66.667 0.00 0.00 0.00 5.69
829 898 2.034999 TGACCCAAATCCGCCACC 59.965 61.111 0.00 0.00 0.00 4.61
843 912 4.463788 CACCTGGGCCCCATTCCC 62.464 72.222 22.27 0.00 44.17 3.97
902 971 1.604438 GGACATTTTCCCGGCAAACAC 60.604 52.381 0.00 0.00 38.70 3.32
903 972 1.339929 GACATTTTCCCGGCAAACACT 59.660 47.619 0.00 0.00 0.00 3.55
904 973 1.760029 ACATTTTCCCGGCAAACACTT 59.240 42.857 0.00 0.00 0.00 3.16
924 993 3.011566 TCTTCACCTTCACCAAGCAAA 57.988 42.857 0.00 0.00 0.00 3.68
925 994 2.951642 TCTTCACCTTCACCAAGCAAAG 59.048 45.455 0.00 0.00 0.00 2.77
949 1021 3.730761 GCACCCAGCAGCAACTCG 61.731 66.667 0.00 0.00 44.79 4.18
1104 1176 2.792290 CGACCTCATTGCGTCGCTG 61.792 63.158 19.50 9.51 44.54 5.18
1250 1325 4.415150 CGTGCTGGGCAGGATGGT 62.415 66.667 6.38 0.00 45.68 3.55
1273 1348 0.323542 GGTCACCGAGGAGGAAGAGA 60.324 60.000 0.00 0.00 45.00 3.10
1275 1350 0.992695 TCACCGAGGAGGAAGAGAGA 59.007 55.000 0.00 0.00 45.00 3.10
1284 1359 1.188219 AGGAAGAGAGACCGCAGCAA 61.188 55.000 0.00 0.00 0.00 3.91
1285 1360 1.016653 GGAAGAGAGACCGCAGCAAC 61.017 60.000 0.00 0.00 0.00 4.17
1286 1361 0.319900 GAAGAGAGACCGCAGCAACA 60.320 55.000 0.00 0.00 0.00 3.33
1287 1362 0.320247 AAGAGAGACCGCAGCAACAG 60.320 55.000 0.00 0.00 0.00 3.16
1288 1363 2.358003 AGAGACCGCAGCAACAGC 60.358 61.111 0.00 0.00 0.00 4.40
1289 1364 2.666190 GAGACCGCAGCAACAGCA 60.666 61.111 0.00 0.00 0.00 4.41
1290 1365 2.959357 GAGACCGCAGCAACAGCAC 61.959 63.158 0.00 0.00 0.00 4.40
1291 1366 4.030452 GACCGCAGCAACAGCACC 62.030 66.667 0.00 0.00 0.00 5.01
1292 1367 4.873810 ACCGCAGCAACAGCACCA 62.874 61.111 0.00 0.00 0.00 4.17
1293 1368 4.034258 CCGCAGCAACAGCACCAG 62.034 66.667 0.00 0.00 0.00 4.00
1294 1369 4.695231 CGCAGCAACAGCACCAGC 62.695 66.667 0.00 0.00 42.56 4.85
1295 1370 3.598715 GCAGCAACAGCACCAGCA 61.599 61.111 0.00 0.00 45.49 4.41
1296 1371 2.643272 CAGCAACAGCACCAGCAG 59.357 61.111 0.00 0.00 45.49 4.24
1430 1505 2.685380 CTCCTCCCGCTCCAAGGT 60.685 66.667 0.00 0.00 0.00 3.50
1431 1506 1.381327 CTCCTCCCGCTCCAAGGTA 60.381 63.158 0.00 0.00 0.00 3.08
1432 1507 0.760945 CTCCTCCCGCTCCAAGGTAT 60.761 60.000 0.00 0.00 0.00 2.73
1473 1551 1.133025 GCTGTCCCACATTCCATTTCG 59.867 52.381 0.00 0.00 0.00 3.46
1499 1608 0.656259 CTCGAATGCCATGTGCTGAG 59.344 55.000 7.54 6.06 42.00 3.35
1662 1775 2.941333 CAGCAGTGCGTCAAGGTG 59.059 61.111 10.00 0.00 0.00 4.00
1674 1787 0.033504 TCAAGGTGCAGTTCGAGGTC 59.966 55.000 0.00 0.00 0.00 3.85
1718 1831 2.429058 CATGATCGGGGCCCTCAG 59.571 66.667 24.38 13.98 0.00 3.35
1869 1982 8.184192 CCTACCTGCTTTGTTGACAATAATAAG 58.816 37.037 0.00 0.00 35.55 1.73
2067 2187 3.469899 TCAAGAAATGAAATGACCGCG 57.530 42.857 0.00 0.00 34.30 6.46
2073 2193 5.056480 AGAAATGAAATGACCGCGATATGA 58.944 37.500 8.23 0.00 0.00 2.15
2077 2197 5.749596 TGAAATGACCGCGATATGATTTT 57.250 34.783 8.23 0.00 0.00 1.82
2079 2199 6.887368 TGAAATGACCGCGATATGATTTTAG 58.113 36.000 8.23 0.00 0.00 1.85
2084 2204 4.957296 ACCGCGATATGATTTTAGTCCTT 58.043 39.130 8.23 0.00 0.00 3.36
2085 2205 6.092955 ACCGCGATATGATTTTAGTCCTTA 57.907 37.500 8.23 0.00 0.00 2.69
2088 2208 6.089551 CCGCGATATGATTTTAGTCCTTAGTG 59.910 42.308 8.23 0.00 0.00 2.74
2102 2222 9.847224 TTAGTCCTTAGTGTTTTCTTGAAATCT 57.153 29.630 0.00 0.58 0.00 2.40
2125 2245 7.402054 TCTATACAAAACATCTTGGTGGTGAT 58.598 34.615 0.00 0.00 0.00 3.06
2129 2249 7.301868 ACAAAACATCTTGGTGGTGATAATT 57.698 32.000 0.00 0.00 0.00 1.40
2130 2250 7.734942 ACAAAACATCTTGGTGGTGATAATTT 58.265 30.769 0.00 0.00 0.00 1.82
2131 2251 8.210265 ACAAAACATCTTGGTGGTGATAATTTT 58.790 29.630 0.00 0.00 0.00 1.82
2132 2252 9.054922 CAAAACATCTTGGTGGTGATAATTTTT 57.945 29.630 0.00 0.00 0.00 1.94
2133 2253 8.606040 AAACATCTTGGTGGTGATAATTTTTG 57.394 30.769 0.00 0.00 0.00 2.44
2145 2265 8.153550 TGGTGATAATTTTTGTTAAGCCATGTT 58.846 29.630 0.00 0.00 0.00 2.71
2148 2268 9.646427 TGATAATTTTTGTTAAGCCATGTTACC 57.354 29.630 0.00 0.00 0.00 2.85
2158 2278 5.897377 AAGCCATGTTACCATCAAAGTAC 57.103 39.130 0.00 0.00 0.00 2.73
2163 2283 6.373216 GCCATGTTACCATCAAAGTACACTAA 59.627 38.462 0.00 0.00 0.00 2.24
2165 2285 8.956426 CCATGTTACCATCAAAGTACACTAAAT 58.044 33.333 0.00 0.00 0.00 1.40
2228 2348 5.750650 TCGACCGTTTTAAACTTTTCATCC 58.249 37.500 6.27 0.00 0.00 3.51
2232 2352 5.751509 ACCGTTTTAAACTTTTCATCCAAGC 59.248 36.000 6.27 0.00 0.00 4.01
2234 2354 6.143919 CCGTTTTAAACTTTTCATCCAAGCTC 59.856 38.462 6.27 0.00 0.00 4.09
2251 2371 1.459975 GCTCGAAACTCGGTCTTTTCC 59.540 52.381 0.00 0.00 40.88 3.13
2258 2378 5.049954 CGAAACTCGGTCTTTTCCAATACAA 60.050 40.000 0.00 0.00 36.00 2.41
2259 2379 6.348213 CGAAACTCGGTCTTTTCCAATACAAT 60.348 38.462 0.00 0.00 36.00 2.71
2260 2380 7.148540 CGAAACTCGGTCTTTTCCAATACAATA 60.149 37.037 0.00 0.00 36.00 1.90
2261 2381 6.980051 ACTCGGTCTTTTCCAATACAATAC 57.020 37.500 0.00 0.00 0.00 1.89
2262 2382 6.469410 ACTCGGTCTTTTCCAATACAATACA 58.531 36.000 0.00 0.00 0.00 2.29
2266 2386 9.451002 TCGGTCTTTTCCAATACAATACAAATA 57.549 29.630 0.00 0.00 0.00 1.40
2267 2387 9.498307 CGGTCTTTTCCAATACAATACAAATAC 57.502 33.333 0.00 0.00 0.00 1.89
2298 2419 9.594478 AAAGTAAAAGGTAAATTGTGAACAAGG 57.406 29.630 1.94 0.00 39.47 3.61
2304 2425 6.223120 AGGTAAATTGTGAACAAGGCAAATC 58.777 36.000 1.94 0.00 39.47 2.17
2306 2427 5.989551 AAATTGTGAACAAGGCAAATCAC 57.010 34.783 1.94 0.00 41.90 3.06
2323 2444 6.308766 GCAAATCACAAAATTTGACTATCGCT 59.691 34.615 13.19 0.00 45.40 4.93
2331 2452 7.094205 ACAAAATTTGACTATCGCTGAGGAATT 60.094 33.333 13.19 0.00 0.00 2.17
2332 2453 5.998454 ATTTGACTATCGCTGAGGAATTG 57.002 39.130 0.00 0.00 0.00 2.32
2333 2454 4.471904 TTGACTATCGCTGAGGAATTGT 57.528 40.909 0.00 0.00 0.00 2.71
2334 2455 3.785486 TGACTATCGCTGAGGAATTGTG 58.215 45.455 0.00 0.00 0.00 3.33
2335 2456 3.195610 TGACTATCGCTGAGGAATTGTGT 59.804 43.478 0.00 0.00 0.00 3.72
2336 2457 3.786635 ACTATCGCTGAGGAATTGTGTC 58.213 45.455 0.00 0.00 0.00 3.67
2353 2476 5.888691 TGTGTCAAAGTTGTGCTAGAAAA 57.111 34.783 0.00 0.00 0.00 2.29
2357 2480 5.163663 TGTCAAAGTTGTGCTAGAAAACCTG 60.164 40.000 0.00 0.00 0.00 4.00
2367 2490 3.187432 GCTAGAAAACCTGTGACTTCTGC 59.813 47.826 0.00 0.00 30.90 4.26
2368 2491 3.567478 AGAAAACCTGTGACTTCTGCT 57.433 42.857 0.00 0.00 0.00 4.24
2369 2492 3.209410 AGAAAACCTGTGACTTCTGCTG 58.791 45.455 0.00 0.00 0.00 4.41
2385 2508 6.829229 TTCTGCTGAAGACATCATTTGAAT 57.171 33.333 1.33 0.00 37.44 2.57
2386 2509 6.829229 TCTGCTGAAGACATCATTTGAATT 57.171 33.333 0.00 0.00 37.44 2.17
2403 2526 5.596836 TGAATTGAACATATCCTTTGCCC 57.403 39.130 0.00 0.00 0.00 5.36
2406 2529 1.318576 GAACATATCCTTTGCCCGGG 58.681 55.000 19.09 19.09 0.00 5.73
2502 2625 4.559862 ATTCTGCAGCTACTGTTAGGTT 57.440 40.909 9.47 0.00 33.58 3.50
2507 2630 5.874810 TCTGCAGCTACTGTTAGGTTAATTG 59.125 40.000 9.47 0.00 33.58 2.32
2508 2631 5.556915 TGCAGCTACTGTTAGGTTAATTGT 58.443 37.500 0.00 0.00 33.58 2.71
2512 2635 7.537649 GCAGCTACTGTTAGGTTAATTGTTTTC 59.462 37.037 0.00 0.00 33.58 2.29
2527 2650 2.225491 TGTTTTCCCGCAAGAATCGAAG 59.775 45.455 0.00 0.00 43.02 3.79
2531 2654 2.985896 TCCCGCAAGAATCGAAGAATT 58.014 42.857 0.00 0.00 40.14 2.17
2532 2655 4.131649 TCCCGCAAGAATCGAAGAATTA 57.868 40.909 0.00 0.00 40.14 1.40
2533 2656 4.509616 TCCCGCAAGAATCGAAGAATTAA 58.490 39.130 0.00 0.00 40.14 1.40
2534 2657 5.123227 TCCCGCAAGAATCGAAGAATTAAT 58.877 37.500 0.00 0.00 40.14 1.40
2542 2665 6.064060 AGAATCGAAGAATTAATCATGCCCA 58.936 36.000 0.00 0.00 43.58 5.36
2543 2666 5.695851 ATCGAAGAATTAATCATGCCCAC 57.304 39.130 0.00 0.00 43.58 4.61
2547 2670 5.973565 CGAAGAATTAATCATGCCCACTTTC 59.026 40.000 0.00 0.00 0.00 2.62
2559 2682 4.575885 TGCCCACTTTCAGTAGTAATCAC 58.424 43.478 0.00 0.00 0.00 3.06
2568 2691 9.003658 ACTTTCAGTAGTAATCACCAAATGAAG 57.996 33.333 0.00 0.00 41.93 3.02
2697 2823 3.036075 ACACTCTTAACTAACCACGCC 57.964 47.619 0.00 0.00 0.00 5.68
2747 2873 0.462047 CGGCCTGCGAGGTAGAAAAT 60.462 55.000 0.00 0.00 37.80 1.82
2867 2993 3.565482 ACGTGCAAAATGTGTTCTGAGAT 59.435 39.130 0.00 0.00 0.00 2.75
2869 2995 4.232221 GTGCAAAATGTGTTCTGAGATGG 58.768 43.478 0.00 0.00 0.00 3.51
2876 3002 4.263018 TGTGTTCTGAGATGGTTCTGAG 57.737 45.455 0.00 0.00 34.80 3.35
2880 3006 1.203287 TCTGAGATGGTTCTGAGCACG 59.797 52.381 0.00 0.00 33.64 5.34
2885 3011 2.435059 GGTTCTGAGCACGAGGGC 60.435 66.667 0.00 0.00 0.00 5.19
2910 3036 5.452078 TGAGACCCATTTGTTCATTGTTC 57.548 39.130 0.00 0.00 0.00 3.18
2916 3042 6.888105 ACCCATTTGTTCATTGTTCTTTCTT 58.112 32.000 0.00 0.00 0.00 2.52
2949 3075 8.574251 TTTTTCTCCTTTATTTCGATGATGGA 57.426 30.769 0.00 0.00 0.00 3.41
2950 3076 7.792374 TTTCTCCTTTATTTCGATGATGGAG 57.208 36.000 11.15 11.15 40.64 3.86
2951 3077 5.858381 TCTCCTTTATTTCGATGATGGAGG 58.142 41.667 14.99 10.68 39.96 4.30
2952 3078 4.973168 TCCTTTATTTCGATGATGGAGGG 58.027 43.478 0.00 0.00 0.00 4.30
2953 3079 3.503748 CCTTTATTTCGATGATGGAGGGC 59.496 47.826 0.00 0.00 0.00 5.19
2954 3080 3.855255 TTATTTCGATGATGGAGGGCA 57.145 42.857 0.00 0.00 0.00 5.36
2955 3081 2.734755 ATTTCGATGATGGAGGGCAA 57.265 45.000 0.00 0.00 0.00 4.52
2956 3082 2.505650 TTTCGATGATGGAGGGCAAA 57.494 45.000 0.00 0.00 0.00 3.68
2957 3083 2.734755 TTCGATGATGGAGGGCAAAT 57.265 45.000 0.00 0.00 0.00 2.32
2958 3084 2.734755 TCGATGATGGAGGGCAAATT 57.265 45.000 0.00 0.00 0.00 1.82
2959 3085 3.017048 TCGATGATGGAGGGCAAATTT 57.983 42.857 0.00 0.00 0.00 1.82
2960 3086 2.689471 TCGATGATGGAGGGCAAATTTG 59.311 45.455 14.03 14.03 0.00 2.32
2961 3087 2.689471 CGATGATGGAGGGCAAATTTGA 59.311 45.455 22.31 0.00 0.00 2.69
2962 3088 3.489738 CGATGATGGAGGGCAAATTTGAC 60.490 47.826 22.31 19.34 34.70 3.18
2963 3089 2.886913 TGATGGAGGGCAAATTTGACA 58.113 42.857 25.05 12.89 38.18 3.58
2964 3090 3.237746 TGATGGAGGGCAAATTTGACAA 58.762 40.909 25.05 8.23 38.18 3.18
2965 3091 3.645212 TGATGGAGGGCAAATTTGACAAA 59.355 39.130 25.05 7.88 38.18 2.83
2966 3092 4.286549 TGATGGAGGGCAAATTTGACAAAT 59.713 37.500 25.05 12.15 38.18 2.32
2967 3093 4.703379 TGGAGGGCAAATTTGACAAATT 57.297 36.364 25.05 18.41 42.62 1.82
2969 3095 6.179906 TGGAGGGCAAATTTGACAAATTTA 57.820 33.333 29.34 15.33 46.34 1.40
2970 3096 6.595682 TGGAGGGCAAATTTGACAAATTTAA 58.404 32.000 29.34 12.68 46.34 1.52
2971 3097 6.484977 TGGAGGGCAAATTTGACAAATTTAAC 59.515 34.615 29.34 24.33 46.34 2.01
2972 3098 6.072728 GGAGGGCAAATTTGACAAATTTAACC 60.073 38.462 29.34 29.36 46.34 2.85
2973 3099 6.600388 AGGGCAAATTTGACAAATTTAACCT 58.400 32.000 31.35 31.35 46.34 3.50
2974 3100 7.740805 AGGGCAAATTTGACAAATTTAACCTA 58.259 30.769 33.31 6.20 46.34 3.08
2975 3101 8.382405 AGGGCAAATTTGACAAATTTAACCTAT 58.618 29.630 33.31 25.52 46.34 2.57
2976 3102 9.660180 GGGCAAATTTGACAAATTTAACCTATA 57.340 29.630 31.84 4.60 46.34 1.31
2995 3121 9.739276 AACCTATAGACAAAATCAAATCACAGA 57.261 29.630 0.00 0.00 0.00 3.41
2996 3122 9.739276 ACCTATAGACAAAATCAAATCACAGAA 57.261 29.630 0.00 0.00 0.00 3.02
3001 3127 8.807667 AGACAAAATCAAATCACAGAATGAAC 57.192 30.769 0.00 0.00 41.93 3.18
3002 3128 8.636213 AGACAAAATCAAATCACAGAATGAACT 58.364 29.630 0.00 0.00 41.93 3.01
3003 3129 8.583810 ACAAAATCAAATCACAGAATGAACTG 57.416 30.769 0.00 0.00 41.93 3.16
3011 3137 3.469008 ACAGAATGAACTGTCCGTGAA 57.531 42.857 0.00 0.00 46.36 3.18
3012 3138 3.804036 ACAGAATGAACTGTCCGTGAAA 58.196 40.909 0.00 0.00 46.36 2.69
3013 3139 3.560068 ACAGAATGAACTGTCCGTGAAAC 59.440 43.478 0.00 0.00 46.36 2.78
3014 3140 3.809832 CAGAATGAACTGTCCGTGAAACT 59.190 43.478 0.00 0.00 39.69 2.66
3015 3141 4.988540 CAGAATGAACTGTCCGTGAAACTA 59.011 41.667 0.00 0.00 39.69 2.24
3016 3142 5.639506 CAGAATGAACTGTCCGTGAAACTAT 59.360 40.000 0.00 0.00 39.69 2.12
3017 3143 6.147821 CAGAATGAACTGTCCGTGAAACTATT 59.852 38.462 0.00 0.00 39.69 1.73
3018 3144 6.710744 AGAATGAACTGTCCGTGAAACTATTT 59.289 34.615 0.00 0.00 31.75 1.40
3019 3145 5.917541 TGAACTGTCCGTGAAACTATTTC 57.082 39.130 0.00 0.00 40.08 2.17
3020 3146 5.361427 TGAACTGTCCGTGAAACTATTTCA 58.639 37.500 0.00 0.00 46.68 2.69
3027 3153 1.803334 TGAAACTATTTCACGCGGCT 58.197 45.000 12.47 0.00 44.21 5.52
3028 3154 1.463056 TGAAACTATTTCACGCGGCTG 59.537 47.619 12.47 0.00 44.21 4.85
3029 3155 1.730064 GAAACTATTTCACGCGGCTGA 59.270 47.619 12.47 2.44 39.45 4.26
3030 3156 1.076332 AACTATTTCACGCGGCTGAC 58.924 50.000 12.47 0.00 0.00 3.51
3031 3157 0.739813 ACTATTTCACGCGGCTGACC 60.740 55.000 12.47 0.00 0.00 4.02
3032 3158 0.739462 CTATTTCACGCGGCTGACCA 60.739 55.000 12.47 0.00 34.57 4.02
3033 3159 0.739462 TATTTCACGCGGCTGACCAG 60.739 55.000 12.47 0.00 34.57 4.00
3034 3160 2.731691 ATTTCACGCGGCTGACCAGT 62.732 55.000 12.47 0.00 34.57 4.00
3035 3161 4.662961 TCACGCGGCTGACCAGTG 62.663 66.667 12.47 0.36 42.47 3.66
3042 3168 4.082523 GCTGACCAGTGGCGCCTA 62.083 66.667 29.70 11.59 0.00 3.93
3043 3169 2.662596 CTGACCAGTGGCGCCTAA 59.337 61.111 29.70 4.80 0.00 2.69
3044 3170 1.741770 CTGACCAGTGGCGCCTAAC 60.742 63.158 29.70 18.92 0.00 2.34
3045 3171 2.172483 CTGACCAGTGGCGCCTAACT 62.172 60.000 29.70 21.12 0.00 2.24
3046 3172 1.448013 GACCAGTGGCGCCTAACTC 60.448 63.158 29.70 11.72 0.00 3.01
3047 3173 1.889530 GACCAGTGGCGCCTAACTCT 61.890 60.000 29.70 14.56 0.00 3.24
3048 3174 1.153549 CCAGTGGCGCCTAACTCTC 60.154 63.158 29.70 8.96 0.00 3.20
3049 3175 1.591703 CAGTGGCGCCTAACTCTCA 59.408 57.895 29.70 0.07 0.00 3.27
3050 3176 0.176680 CAGTGGCGCCTAACTCTCAT 59.823 55.000 29.70 0.00 0.00 2.90
3051 3177 0.176680 AGTGGCGCCTAACTCTCATG 59.823 55.000 29.70 0.00 0.00 3.07
3052 3178 1.153369 TGGCGCCTAACTCTCATGC 60.153 57.895 29.70 0.00 0.00 4.06
3054 3180 3.313750 CGCCTAACTCTCATGCGC 58.686 61.111 0.00 0.00 38.69 6.09
3055 3181 2.240500 CGCCTAACTCTCATGCGCC 61.241 63.158 4.18 0.00 38.69 6.53
3056 3182 2.240500 GCCTAACTCTCATGCGCCG 61.241 63.158 4.18 0.00 0.00 6.46
3057 3183 2.240500 CCTAACTCTCATGCGCCGC 61.241 63.158 4.18 0.00 0.00 6.53
3058 3184 1.519234 CTAACTCTCATGCGCCGCA 60.519 57.895 16.69 16.69 44.86 5.69
3059 3185 1.756375 CTAACTCTCATGCGCCGCAC 61.756 60.000 16.70 0.00 43.04 5.34
3060 3186 2.225791 TAACTCTCATGCGCCGCACT 62.226 55.000 16.70 0.10 43.04 4.40
3061 3187 2.104928 CTCTCATGCGCCGCACTA 59.895 61.111 16.70 4.12 43.04 2.74
3062 3188 1.948138 CTCTCATGCGCCGCACTAG 60.948 63.158 16.70 15.30 43.04 2.57
3063 3189 2.202797 CTCATGCGCCGCACTAGT 60.203 61.111 16.70 0.00 43.04 2.57
3064 3190 2.509111 TCATGCGCCGCACTAGTG 60.509 61.111 16.70 18.93 43.04 2.74
3074 3200 3.566261 CACTAGTGCAACGCCTGG 58.434 61.111 10.54 0.00 45.86 4.45
3075 3201 2.034879 CACTAGTGCAACGCCTGGG 61.035 63.158 10.54 0.00 45.86 4.45
3076 3202 2.214216 ACTAGTGCAACGCCTGGGA 61.214 57.895 0.00 0.00 45.86 4.37
3077 3203 1.448540 CTAGTGCAACGCCTGGGAG 60.449 63.158 0.00 0.00 45.86 4.30
3078 3204 3.605749 TAGTGCAACGCCTGGGAGC 62.606 63.158 0.00 0.00 45.86 4.70
3080 3206 3.318384 TGCAACGCCTGGGAGCTA 61.318 61.111 0.00 0.00 0.00 3.32
3081 3207 2.512515 GCAACGCCTGGGAGCTAG 60.513 66.667 0.00 0.00 0.00 3.42
3082 3208 2.187946 CAACGCCTGGGAGCTAGG 59.812 66.667 0.00 0.00 38.39 3.02
3094 3220 2.279784 GCTAGGCGCTGCACTAGG 60.280 66.667 22.12 10.08 37.69 3.02
3095 3221 2.279784 CTAGGCGCTGCACTAGGC 60.280 66.667 7.64 5.77 45.13 3.93
3110 3236 3.217231 GGCAACGCCTAGGAGCTA 58.783 61.111 14.75 0.00 46.69 3.32
3111 3237 1.068250 GGCAACGCCTAGGAGCTAG 59.932 63.158 14.75 3.92 46.69 3.42
3121 3247 2.985456 GGAGCTAGGCTGCACACT 59.015 61.111 0.50 0.00 46.16 3.55
3122 3248 1.449246 GGAGCTAGGCTGCACACTG 60.449 63.158 0.50 0.00 46.16 3.66
3123 3249 1.593787 GAGCTAGGCTGCACACTGA 59.406 57.895 0.50 0.00 39.88 3.41
3124 3250 0.739112 GAGCTAGGCTGCACACTGAC 60.739 60.000 0.50 0.00 39.88 3.51
3125 3251 1.190833 AGCTAGGCTGCACACTGACT 61.191 55.000 0.50 0.00 37.57 3.41
3126 3252 0.321122 GCTAGGCTGCACACTGACTT 60.321 55.000 0.50 0.00 34.44 3.01
3127 3253 1.066858 GCTAGGCTGCACACTGACTTA 60.067 52.381 0.50 0.00 34.44 2.24
3128 3254 2.886081 CTAGGCTGCACACTGACTTAG 58.114 52.381 0.50 0.00 34.44 2.18
3129 3255 1.051812 AGGCTGCACACTGACTTAGT 58.948 50.000 0.50 0.00 41.36 2.24
3130 3256 2.248248 AGGCTGCACACTGACTTAGTA 58.752 47.619 0.50 0.00 37.60 1.82
3131 3257 2.632996 AGGCTGCACACTGACTTAGTAA 59.367 45.455 0.50 0.00 37.60 2.24
3132 3258 3.261897 AGGCTGCACACTGACTTAGTAAT 59.738 43.478 0.50 0.00 37.60 1.89
3133 3259 4.003648 GGCTGCACACTGACTTAGTAATT 58.996 43.478 0.50 0.00 37.60 1.40
3134 3260 4.455877 GGCTGCACACTGACTTAGTAATTT 59.544 41.667 0.50 0.00 37.60 1.82
3135 3261 5.048713 GGCTGCACACTGACTTAGTAATTTT 60.049 40.000 0.50 0.00 37.60 1.82
3136 3262 6.080406 GCTGCACACTGACTTAGTAATTTTC 58.920 40.000 0.00 0.00 37.60 2.29
3137 3263 6.073003 GCTGCACACTGACTTAGTAATTTTCT 60.073 38.462 0.00 0.00 37.60 2.52
3138 3264 7.189693 TGCACACTGACTTAGTAATTTTCTG 57.810 36.000 0.00 0.00 37.60 3.02
3139 3265 6.989759 TGCACACTGACTTAGTAATTTTCTGA 59.010 34.615 0.00 0.00 37.60 3.27
3140 3266 7.661437 TGCACACTGACTTAGTAATTTTCTGAT 59.339 33.333 0.00 0.00 37.60 2.90
3141 3267 8.171840 GCACACTGACTTAGTAATTTTCTGATC 58.828 37.037 0.00 0.00 37.60 2.92
3142 3268 9.208022 CACACTGACTTAGTAATTTTCTGATCA 57.792 33.333 0.00 0.00 37.60 2.92
3143 3269 9.209175 ACACTGACTTAGTAATTTTCTGATCAC 57.791 33.333 0.00 0.00 37.60 3.06
3144 3270 9.208022 CACTGACTTAGTAATTTTCTGATCACA 57.792 33.333 0.00 0.00 37.60 3.58
3145 3271 9.209175 ACTGACTTAGTAATTTTCTGATCACAC 57.791 33.333 0.00 0.00 38.04 3.82
3146 3272 8.239681 TGACTTAGTAATTTTCTGATCACACG 57.760 34.615 0.00 0.00 0.00 4.49
3147 3273 7.330946 TGACTTAGTAATTTTCTGATCACACGG 59.669 37.037 0.00 0.00 0.00 4.94
3148 3274 6.594159 ACTTAGTAATTTTCTGATCACACGGG 59.406 38.462 0.00 0.00 0.00 5.28
3149 3275 4.906618 AGTAATTTTCTGATCACACGGGT 58.093 39.130 0.00 0.00 0.00 5.28
3150 3276 4.695455 AGTAATTTTCTGATCACACGGGTG 59.305 41.667 12.84 12.84 46.66 4.61
3151 3277 1.234821 TTTTCTGATCACACGGGTGC 58.765 50.000 14.50 0.00 44.87 5.01
3152 3278 0.948623 TTTCTGATCACACGGGTGCG 60.949 55.000 14.50 1.20 44.87 5.34
3153 3279 1.811645 TTCTGATCACACGGGTGCGA 61.812 55.000 14.50 3.83 44.87 5.10
3154 3280 2.048597 TGATCACACGGGTGCGAC 60.049 61.111 14.50 7.33 44.87 5.19
3155 3281 3.179265 GATCACACGGGTGCGACG 61.179 66.667 14.50 0.00 44.87 5.12
3173 3299 3.833645 CTGGCCGTGTAGCGCCTA 61.834 66.667 2.29 0.00 39.71 3.93
3174 3300 3.151710 TGGCCGTGTAGCGCCTAT 61.152 61.111 2.29 0.00 39.71 2.57
3175 3301 2.355956 GGCCGTGTAGCGCCTATC 60.356 66.667 2.29 0.00 39.71 2.08
3176 3302 2.728817 GCCGTGTAGCGCCTATCT 59.271 61.111 2.29 0.00 39.71 1.98
3177 3303 1.661821 GCCGTGTAGCGCCTATCTG 60.662 63.158 2.29 0.00 39.71 2.90
3178 3304 1.734137 CCGTGTAGCGCCTATCTGT 59.266 57.895 2.29 0.00 39.71 3.41
3179 3305 0.595053 CCGTGTAGCGCCTATCTGTG 60.595 60.000 2.29 0.00 39.71 3.66
3180 3306 0.380733 CGTGTAGCGCCTATCTGTGA 59.619 55.000 2.29 0.00 0.00 3.58
3181 3307 1.598183 CGTGTAGCGCCTATCTGTGAG 60.598 57.143 2.29 0.00 0.00 3.51
3182 3308 1.032794 TGTAGCGCCTATCTGTGAGG 58.967 55.000 2.29 0.00 37.12 3.86
3188 3314 2.682893 CCTATCTGTGAGGCGTTGC 58.317 57.895 0.00 0.00 0.00 4.17
3189 3315 0.108186 CCTATCTGTGAGGCGTTGCA 60.108 55.000 0.00 0.00 0.00 4.08
3190 3316 1.002366 CTATCTGTGAGGCGTTGCAC 58.998 55.000 0.00 0.00 35.63 4.57
3191 3317 0.320050 TATCTGTGAGGCGTTGCACA 59.680 50.000 0.00 0.00 42.25 4.57
3193 3319 2.189257 TGTGAGGCGTTGCACAGT 59.811 55.556 0.00 0.00 39.86 3.55
3194 3320 2.179547 TGTGAGGCGTTGCACAGTG 61.180 57.895 0.00 0.00 39.86 3.66
3195 3321 2.180204 GTGAGGCGTTGCACAGTGT 61.180 57.895 1.61 0.00 35.19 3.55
3196 3322 0.878523 GTGAGGCGTTGCACAGTGTA 60.879 55.000 1.61 0.00 35.19 2.90
3197 3323 0.599991 TGAGGCGTTGCACAGTGTAG 60.600 55.000 1.61 0.00 0.00 2.74
3198 3324 0.600255 GAGGCGTTGCACAGTGTAGT 60.600 55.000 1.61 0.00 0.00 2.73
3199 3325 0.880278 AGGCGTTGCACAGTGTAGTG 60.880 55.000 1.61 0.00 42.37 2.74
3200 3326 1.157870 GGCGTTGCACAGTGTAGTGT 61.158 55.000 1.61 0.00 41.52 3.55
3202 3328 0.581529 CGTTGCACAGTGTAGTGTGG 59.418 55.000 18.52 1.81 46.73 4.17
3203 3329 0.307760 GTTGCACAGTGTAGTGTGGC 59.692 55.000 18.52 12.34 46.73 5.01
3204 3330 1.157257 TTGCACAGTGTAGTGTGGCG 61.157 55.000 18.52 0.00 46.73 5.69
3205 3331 2.954753 GCACAGTGTAGTGTGGCGC 61.955 63.158 18.52 0.00 46.73 6.53
3206 3332 2.030562 ACAGTGTAGTGTGGCGCC 59.969 61.111 22.73 22.73 0.00 6.53
3207 3333 2.343758 CAGTGTAGTGTGGCGCCT 59.656 61.111 29.70 9.99 0.00 5.52
3208 3334 1.301716 CAGTGTAGTGTGGCGCCTT 60.302 57.895 29.70 13.03 0.00 4.35
3209 3335 1.004918 AGTGTAGTGTGGCGCCTTC 60.005 57.895 29.70 20.58 0.00 3.46
3210 3336 2.048597 TGTAGTGTGGCGCCTTCG 60.049 61.111 29.70 0.00 39.07 3.79
3211 3337 2.048503 GTAGTGTGGCGCCTTCGT 60.049 61.111 29.70 12.53 38.14 3.85
3212 3338 2.048597 TAGTGTGGCGCCTTCGTG 60.049 61.111 29.70 0.00 38.14 4.35
3213 3339 2.863346 TAGTGTGGCGCCTTCGTGT 61.863 57.895 29.70 9.85 38.14 4.49
3214 3340 2.758770 TAGTGTGGCGCCTTCGTGTC 62.759 60.000 29.70 10.72 38.14 3.67
3222 3348 4.351938 CCTTCGTGTCGGGCGTCA 62.352 66.667 0.00 0.00 0.00 4.35
3223 3349 3.103911 CTTCGTGTCGGGCGTCAC 61.104 66.667 0.00 0.00 0.00 3.67
3224 3350 3.834447 CTTCGTGTCGGGCGTCACA 62.834 63.158 0.00 0.00 34.69 3.58
3225 3351 4.634133 TCGTGTCGGGCGTCACAC 62.634 66.667 0.75 0.75 39.70 3.82
3226 3352 4.934942 CGTGTCGGGCGTCACACA 62.935 66.667 10.72 0.00 42.67 3.72
3227 3353 2.586635 GTGTCGGGCGTCACACAA 60.587 61.111 5.81 0.00 42.20 3.33
3228 3354 2.174969 GTGTCGGGCGTCACACAAA 61.175 57.895 5.81 0.00 42.20 2.83
3229 3355 1.449778 TGTCGGGCGTCACACAAAA 60.450 52.632 0.00 0.00 0.00 2.44
3230 3356 1.025113 TGTCGGGCGTCACACAAAAA 61.025 50.000 0.00 0.00 0.00 1.94
3231 3357 0.316689 GTCGGGCGTCACACAAAAAG 60.317 55.000 0.00 0.00 0.00 2.27
3232 3358 1.008995 CGGGCGTCACACAAAAAGG 60.009 57.895 0.00 0.00 0.00 3.11
3233 3359 1.720694 CGGGCGTCACACAAAAAGGT 61.721 55.000 0.00 0.00 0.00 3.50
3234 3360 0.030235 GGGCGTCACACAAAAAGGTC 59.970 55.000 0.00 0.00 0.00 3.85
3235 3361 0.736053 GGCGTCACACAAAAAGGTCA 59.264 50.000 0.00 0.00 0.00 4.02
3236 3362 1.268539 GGCGTCACACAAAAAGGTCAG 60.269 52.381 0.00 0.00 0.00 3.51
3237 3363 1.859998 GCGTCACACAAAAAGGTCAGC 60.860 52.381 0.00 0.00 0.00 4.26
3238 3364 1.268539 CGTCACACAAAAAGGTCAGCC 60.269 52.381 0.00 0.00 0.00 4.85
3239 3365 1.021202 TCACACAAAAAGGTCAGCCG 58.979 50.000 0.00 0.00 40.50 5.52
3240 3366 0.594796 CACACAAAAAGGTCAGCCGC 60.595 55.000 0.00 0.00 40.50 6.53
3241 3367 1.370414 CACAAAAAGGTCAGCCGCG 60.370 57.895 0.00 0.00 40.50 6.46
3242 3368 1.822186 ACAAAAAGGTCAGCCGCGT 60.822 52.632 4.92 0.00 40.50 6.01
3243 3369 1.370414 CAAAAAGGTCAGCCGCGTG 60.370 57.895 4.92 0.00 40.50 5.34
3244 3370 1.525077 AAAAAGGTCAGCCGCGTGA 60.525 52.632 4.92 0.00 40.50 4.35
3245 3371 1.098712 AAAAAGGTCAGCCGCGTGAA 61.099 50.000 4.92 0.00 40.50 3.18
3246 3372 1.098712 AAAAGGTCAGCCGCGTGAAA 61.099 50.000 4.92 0.00 40.50 2.69
3247 3373 0.889186 AAAGGTCAGCCGCGTGAAAT 60.889 50.000 4.92 0.00 40.50 2.17
3248 3374 0.036765 AAGGTCAGCCGCGTGAAATA 60.037 50.000 4.92 0.00 40.50 1.40
3249 3375 0.460284 AGGTCAGCCGCGTGAAATAG 60.460 55.000 4.92 0.00 40.50 1.73
3250 3376 0.739813 GGTCAGCCGCGTGAAATAGT 60.740 55.000 4.92 0.00 0.00 2.12
3251 3377 1.076332 GTCAGCCGCGTGAAATAGTT 58.924 50.000 4.92 0.00 0.00 2.24
3252 3378 1.463444 GTCAGCCGCGTGAAATAGTTT 59.537 47.619 4.92 0.00 0.00 2.66
3253 3379 1.730064 TCAGCCGCGTGAAATAGTTTC 59.270 47.619 4.92 0.00 40.08 2.78
3254 3380 1.463056 CAGCCGCGTGAAATAGTTTCA 59.537 47.619 4.92 1.24 46.68 2.69
3271 3397 9.886132 AATAGTTTCACGGATAGTTTATTCTGT 57.114 29.630 0.00 0.00 0.00 3.41
3272 3398 7.596749 AGTTTCACGGATAGTTTATTCTGTG 57.403 36.000 5.70 5.70 0.00 3.66
3273 3399 7.383687 AGTTTCACGGATAGTTTATTCTGTGA 58.616 34.615 9.82 9.82 30.74 3.58
3274 3400 8.041323 AGTTTCACGGATAGTTTATTCTGTGAT 58.959 33.333 13.59 0.00 31.90 3.06
3275 3401 8.665685 GTTTCACGGATAGTTTATTCTGTGATT 58.334 33.333 13.59 0.00 31.90 2.57
3276 3402 8.786826 TTCACGGATAGTTTATTCTGTGATTT 57.213 30.769 13.59 0.00 31.90 2.17
3277 3403 8.196802 TCACGGATAGTTTATTCTGTGATTTG 57.803 34.615 9.82 0.00 29.01 2.32
3278 3404 8.038351 TCACGGATAGTTTATTCTGTGATTTGA 58.962 33.333 9.82 0.00 29.01 2.69
3279 3405 8.830580 CACGGATAGTTTATTCTGTGATTTGAT 58.169 33.333 6.09 0.00 0.00 2.57
3280 3406 9.396022 ACGGATAGTTTATTCTGTGATTTGATT 57.604 29.630 0.00 0.00 0.00 2.57
3286 3412 9.003658 AGTTTATTCTGTGATTTGATTTCGTCT 57.996 29.630 0.00 0.00 0.00 4.18
3291 3417 8.648557 TTCTGTGATTTGATTTCGTCTATAGG 57.351 34.615 0.00 0.00 0.00 2.57
3292 3418 7.782049 TCTGTGATTTGATTTCGTCTATAGGT 58.218 34.615 0.00 0.00 0.00 3.08
3293 3419 7.921214 TCTGTGATTTGATTTCGTCTATAGGTC 59.079 37.037 0.00 0.00 0.00 3.85
3294 3420 7.552459 TGTGATTTGATTTCGTCTATAGGTCA 58.448 34.615 0.00 0.00 0.00 4.02
3295 3421 8.038351 TGTGATTTGATTTCGTCTATAGGTCAA 58.962 33.333 0.00 0.00 0.00 3.18
3296 3422 8.879759 GTGATTTGATTTCGTCTATAGGTCAAA 58.120 33.333 0.00 7.93 38.14 2.69
3297 3423 9.613428 TGATTTGATTTCGTCTATAGGTCAAAT 57.387 29.630 17.06 17.06 43.48 2.32
3301 3427 8.786826 TGATTTCGTCTATAGGTCAAATTTGT 57.213 30.769 17.47 1.67 0.00 2.83
3302 3428 8.879759 TGATTTCGTCTATAGGTCAAATTTGTC 58.120 33.333 17.47 12.07 0.00 3.18
3303 3429 8.786826 ATTTCGTCTATAGGTCAAATTTGTCA 57.213 30.769 17.47 0.00 0.00 3.58
3304 3430 8.610248 TTTCGTCTATAGGTCAAATTTGTCAA 57.390 30.769 17.47 5.31 0.00 3.18
3305 3431 8.610248 TTCGTCTATAGGTCAAATTTGTCAAA 57.390 30.769 17.47 0.00 0.00 2.69
3306 3432 8.786826 TCGTCTATAGGTCAAATTTGTCAAAT 57.213 30.769 17.47 4.91 0.00 2.32
3307 3433 9.226606 TCGTCTATAGGTCAAATTTGTCAAATT 57.773 29.630 16.26 16.26 42.62 1.82
3349 3475 2.578586 ATCTCCACATGCCCTTGCCC 62.579 60.000 0.00 0.00 36.33 5.36
3392 3518 0.447011 GTACTCTCGACCCTCGTGTG 59.553 60.000 0.00 0.00 41.35 3.82
3406 3533 0.391597 CGTGTGTGGTCCTAGTGGTT 59.608 55.000 0.00 0.00 34.23 3.67
3408 3535 2.218603 GTGTGTGGTCCTAGTGGTTTG 58.781 52.381 0.00 0.00 34.23 2.93
3411 3538 2.876550 GTGTGGTCCTAGTGGTTTGTTC 59.123 50.000 0.00 0.00 34.23 3.18
3444 3573 8.072321 TGAAGATGTAAGTAGCTCTTCAGATT 57.928 34.615 9.18 3.83 45.17 2.40
3468 3597 1.978580 AGGTAGTGAGGTCAACTTGGG 59.021 52.381 0.00 0.00 0.00 4.12
3477 3606 4.082125 GAGGTCAACTTGGGATCAAATGT 58.918 43.478 0.00 0.00 31.77 2.71
3483 3612 2.899256 ACTTGGGATCAAATGTGTTGGG 59.101 45.455 0.00 0.00 31.77 4.12
3501 3631 2.090494 TGGGAAAATTTGAAGGGGGTCA 60.090 45.455 0.00 0.00 0.00 4.02
3505 3635 4.102524 GGAAAATTTGAAGGGGGTCAACTT 59.897 41.667 0.00 0.00 37.24 2.66
3510 3640 0.467290 GAAGGGGGTCAACTTGCACA 60.467 55.000 0.00 0.00 0.00 4.57
3613 3743 1.846712 GAAGAGGGACCAGCAAGCCT 61.847 60.000 0.00 0.00 0.00 4.58
3614 3744 1.430369 AAGAGGGACCAGCAAGCCTT 61.430 55.000 0.00 0.00 0.00 4.35
3615 3745 1.075659 GAGGGACCAGCAAGCCTTT 59.924 57.895 0.00 0.00 0.00 3.11
3616 3746 1.228675 AGGGACCAGCAAGCCTTTG 60.229 57.895 0.00 0.00 37.36 2.77
3628 3758 0.746659 AGCCTTTGTTGGTTGCTGAC 59.253 50.000 0.00 0.00 0.00 3.51
3722 3853 5.757886 TCGAGCAACCTTTTCACTAAAATG 58.242 37.500 0.00 0.00 34.18 2.32
3723 3854 5.529430 TCGAGCAACCTTTTCACTAAAATGA 59.471 36.000 0.00 0.00 34.18 2.57
3724 3855 6.206634 TCGAGCAACCTTTTCACTAAAATGAT 59.793 34.615 0.00 0.00 34.18 2.45
3725 3856 7.389330 TCGAGCAACCTTTTCACTAAAATGATA 59.611 33.333 0.00 0.00 34.18 2.15
3726 3857 8.020819 CGAGCAACCTTTTCACTAAAATGATAA 58.979 33.333 0.00 0.00 34.18 1.75
3727 3858 9.691362 GAGCAACCTTTTCACTAAAATGATAAA 57.309 29.630 0.00 0.00 34.18 1.40
3829 3960 5.779922 AGCTCAACTATTCTCGTGTTTGTA 58.220 37.500 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.616204 GCAAACGAGGTTATTGTAGTCCAAC 60.616 44.000 0.00 0.00 35.44 3.77
1 2 4.453136 GCAAACGAGGTTATTGTAGTCCAA 59.547 41.667 0.00 0.00 37.49 3.53
17 18 3.253188 CCAAAAGAGGATTGAGCAAACGA 59.747 43.478 0.00 0.00 0.00 3.85
47 48 6.486993 GCAATAAGGGCTAAGCAAATACTACT 59.513 38.462 0.00 0.00 0.00 2.57
48 49 6.294010 GGCAATAAGGGCTAAGCAAATACTAC 60.294 42.308 0.00 0.00 0.00 2.73
49 50 5.768164 GGCAATAAGGGCTAAGCAAATACTA 59.232 40.000 0.00 0.00 0.00 1.82
50 51 4.584743 GGCAATAAGGGCTAAGCAAATACT 59.415 41.667 0.00 0.00 0.00 2.12
64 68 7.639113 TTAGATACAAAAGTGGGCAATAAGG 57.361 36.000 0.00 0.00 0.00 2.69
101 105 7.154656 TGTTGCGCTATGATTATCTCATAACT 58.845 34.615 9.73 0.00 44.36 2.24
113 117 4.336153 TCATGAACAATGTTGCGCTATGAT 59.664 37.500 9.73 0.00 37.56 2.45
120 124 1.978097 CGGTTCATGAACAATGTTGCG 59.022 47.619 33.42 23.26 42.85 4.85
141 145 6.238374 CCATATAACAACACTGGACCGATTTC 60.238 42.308 0.00 0.00 0.00 2.17
209 213 0.106894 CTTCCTTCGCCCATCCTACC 59.893 60.000 0.00 0.00 0.00 3.18
210 214 0.831307 ACTTCCTTCGCCCATCCTAC 59.169 55.000 0.00 0.00 0.00 3.18
215 219 4.262292 GGTTTTAAAACTTCCTTCGCCCAT 60.262 41.667 25.89 0.00 38.89 4.00
243 247 2.766970 TATAAATTGAAAGCGCCGCC 57.233 45.000 4.98 0.00 0.00 6.13
273 277 3.328237 TTTCGCCGTTCTTGAACTTTC 57.672 42.857 11.11 0.83 0.00 2.62
302 307 2.080654 AGCCAGTGCCTAACCAAAAA 57.919 45.000 0.00 0.00 38.69 1.94
304 309 2.961531 TAAGCCAGTGCCTAACCAAA 57.038 45.000 0.00 0.00 38.69 3.28
305 310 3.680475 CGTATAAGCCAGTGCCTAACCAA 60.680 47.826 0.00 0.00 38.69 3.67
306 311 2.159014 CGTATAAGCCAGTGCCTAACCA 60.159 50.000 0.00 0.00 38.69 3.67
307 312 2.480845 CGTATAAGCCAGTGCCTAACC 58.519 52.381 0.00 0.00 38.69 2.85
308 313 1.865340 GCGTATAAGCCAGTGCCTAAC 59.135 52.381 0.00 0.00 38.69 2.34
310 315 1.116308 TGCGTATAAGCCAGTGCCTA 58.884 50.000 8.22 0.00 38.69 3.93
311 316 0.251916 TTGCGTATAAGCCAGTGCCT 59.748 50.000 8.22 0.00 38.69 4.75
313 318 0.657840 CCTTGCGTATAAGCCAGTGC 59.342 55.000 8.22 0.00 36.02 4.40
314 319 2.309528 TCCTTGCGTATAAGCCAGTG 57.690 50.000 8.22 1.93 36.02 3.66
315 320 3.270877 CTTTCCTTGCGTATAAGCCAGT 58.729 45.455 8.22 0.00 36.02 4.00
316 321 2.032178 GCTTTCCTTGCGTATAAGCCAG 59.968 50.000 8.22 6.49 36.18 4.85
318 323 2.757686 GCTTTCCTTGCGTATAAGCC 57.242 50.000 8.22 0.00 36.18 4.35
319 324 2.014128 TGGCTTTCCTTGCGTATAAGC 58.986 47.619 3.45 3.45 40.25 3.09
320 325 4.662145 CTTTGGCTTTCCTTGCGTATAAG 58.338 43.478 0.00 0.00 0.00 1.73
322 327 2.422127 GCTTTGGCTTTCCTTGCGTATA 59.578 45.455 0.00 0.00 35.22 1.47
323 328 1.202348 GCTTTGGCTTTCCTTGCGTAT 59.798 47.619 0.00 0.00 35.22 3.06
324 329 0.596082 GCTTTGGCTTTCCTTGCGTA 59.404 50.000 0.00 0.00 35.22 4.42
325 330 1.363807 GCTTTGGCTTTCCTTGCGT 59.636 52.632 0.00 0.00 35.22 5.24
326 331 1.373371 GGCTTTGGCTTTCCTTGCG 60.373 57.895 0.00 0.00 38.73 4.85
327 332 0.106521 TTGGCTTTGGCTTTCCTTGC 59.893 50.000 0.00 0.00 38.73 4.01
329 334 1.836802 TGTTTGGCTTTGGCTTTCCTT 59.163 42.857 0.00 0.00 38.73 3.36
330 335 1.138859 GTGTTTGGCTTTGGCTTTCCT 59.861 47.619 0.00 0.00 38.73 3.36
337 350 0.104671 CACTGGGTGTTTGGCTTTGG 59.895 55.000 0.00 0.00 0.00 3.28
382 395 7.368480 ACAAACGTATAAACCTATGTTGACC 57.632 36.000 0.00 0.00 34.13 4.02
383 396 9.321590 GAAACAAACGTATAAACCTATGTTGAC 57.678 33.333 0.00 0.00 34.13 3.18
419 432 7.805542 CCTTTTTCTTTAGCAAAAGTAGCTCTC 59.194 37.037 11.70 0.00 42.36 3.20
421 434 7.649057 TCCTTTTTCTTTAGCAAAAGTAGCTC 58.351 34.615 11.70 0.00 42.36 4.09
474 492 2.517935 GAGCGTCCGTCTTAACTTCTC 58.482 52.381 0.00 0.00 0.00 2.87
514 535 0.950836 TTGGCATGCCGATTTATCCG 59.049 50.000 30.87 0.00 39.42 4.18
571 616 2.715005 GCTGACAAGTGTGCGCAA 59.285 55.556 14.00 0.00 0.00 4.85
615 660 2.510238 CACGTAGGCAGAGGCAGC 60.510 66.667 0.00 0.00 43.71 5.25
670 724 1.291033 AGGTAGTGATGGGCCTACTCA 59.709 52.381 4.53 2.22 35.10 3.41
895 964 3.489229 GGTGAAGGTGAAGAAGTGTTTGC 60.489 47.826 0.00 0.00 0.00 3.68
902 971 2.575532 TGCTTGGTGAAGGTGAAGAAG 58.424 47.619 0.00 0.00 0.00 2.85
903 972 2.727123 TGCTTGGTGAAGGTGAAGAA 57.273 45.000 0.00 0.00 0.00 2.52
904 973 2.727123 TTGCTTGGTGAAGGTGAAGA 57.273 45.000 0.00 0.00 0.00 2.87
924 993 4.193893 TGCTGGGTGCTGTGTGCT 62.194 61.111 0.00 0.00 43.37 4.40
925 994 3.667282 CTGCTGGGTGCTGTGTGC 61.667 66.667 0.00 0.00 43.37 4.57
962 1034 3.855853 GGCCTCCTTCGCTCCTCC 61.856 72.222 0.00 0.00 0.00 4.30
1256 1331 0.992695 TCTCTCTTCCTCCTCGGTGA 59.007 55.000 0.00 0.00 0.00 4.02
1269 1344 1.291588 CTGTTGCTGCGGTCTCTCT 59.708 57.895 0.00 0.00 0.00 3.10
1273 1348 2.974698 GTGCTGTTGCTGCGGTCT 60.975 61.111 0.00 0.00 40.48 3.85
1275 1350 4.873810 TGGTGCTGTTGCTGCGGT 62.874 61.111 0.00 0.00 40.48 5.68
1284 1359 4.574271 TGCTGCTGCTGGTGCTGT 62.574 61.111 17.00 0.00 39.81 4.40
1285 1360 3.738246 CTGCTGCTGCTGGTGCTG 61.738 66.667 17.00 4.75 40.48 4.41
1288 1363 3.738246 CTGCTGCTGCTGCTGGTG 61.738 66.667 27.67 13.98 40.48 4.17
1430 1505 0.027979 CGCGGACGGTCGAAGTAATA 59.972 55.000 0.00 0.00 34.97 0.98
1431 1506 1.226491 CGCGGACGGTCGAAGTAAT 60.226 57.895 0.00 0.00 34.97 1.89
1432 1507 2.176546 CGCGGACGGTCGAAGTAA 59.823 61.111 0.00 0.00 34.97 2.24
1473 1551 2.117156 ATGGCATTCGAGCACCAGC 61.117 57.895 0.00 0.00 42.56 4.85
1499 1608 1.466360 GCAATGGCATCACTCGTTCAC 60.466 52.381 0.00 0.00 40.72 3.18
1718 1831 1.099879 ATTCATGCTCTTGAGGCGCC 61.100 55.000 21.89 21.89 0.00 6.53
1869 1982 4.725790 TTCTAACCTAGTTTAGTCCGGC 57.274 45.455 6.91 0.00 31.87 6.13
1926 2045 5.838531 ACTAAAACAACACGGAAATTCCA 57.161 34.783 13.04 0.00 35.91 3.53
1981 2100 4.895889 TCCCTATCCAACAGTCTAGTGATG 59.104 45.833 0.00 0.00 0.00 3.07
1982 2101 4.896482 GTCCCTATCCAACAGTCTAGTGAT 59.104 45.833 0.00 0.00 0.00 3.06
1983 2102 4.017407 AGTCCCTATCCAACAGTCTAGTGA 60.017 45.833 0.00 0.00 0.00 3.41
1984 2103 4.098654 CAGTCCCTATCCAACAGTCTAGTG 59.901 50.000 0.00 0.00 0.00 2.74
1985 2104 4.282496 CAGTCCCTATCCAACAGTCTAGT 58.718 47.826 0.00 0.00 0.00 2.57
1986 2105 3.068873 GCAGTCCCTATCCAACAGTCTAG 59.931 52.174 0.00 0.00 0.00 2.43
1988 2107 1.834263 GCAGTCCCTATCCAACAGTCT 59.166 52.381 0.00 0.00 0.00 3.24
2058 2178 5.408604 GGACTAAAATCATATCGCGGTCATT 59.591 40.000 6.13 0.00 0.00 2.57
2059 2179 4.929808 GGACTAAAATCATATCGCGGTCAT 59.070 41.667 6.13 0.00 0.00 3.06
2060 2180 4.038763 AGGACTAAAATCATATCGCGGTCA 59.961 41.667 6.13 0.00 0.00 4.02
2061 2181 4.557205 AGGACTAAAATCATATCGCGGTC 58.443 43.478 6.13 0.20 0.00 4.79
2062 2182 4.602340 AGGACTAAAATCATATCGCGGT 57.398 40.909 6.13 0.00 0.00 5.68
2064 2184 6.641314 ACACTAAGGACTAAAATCATATCGCG 59.359 38.462 0.00 0.00 0.00 5.87
2095 2215 8.739039 CCACCAAGATGTTTTGTATAGATTTCA 58.261 33.333 0.00 0.00 0.00 2.69
2096 2216 8.739972 ACCACCAAGATGTTTTGTATAGATTTC 58.260 33.333 0.00 0.00 0.00 2.17
2099 2219 7.402054 TCACCACCAAGATGTTTTGTATAGAT 58.598 34.615 0.00 0.00 0.00 1.98
2100 2220 6.774673 TCACCACCAAGATGTTTTGTATAGA 58.225 36.000 0.00 0.00 0.00 1.98
2101 2221 7.630242 ATCACCACCAAGATGTTTTGTATAG 57.370 36.000 0.00 0.00 0.00 1.31
2102 2222 9.693739 ATTATCACCACCAAGATGTTTTGTATA 57.306 29.630 0.00 0.00 0.00 1.47
2103 2223 8.593945 ATTATCACCACCAAGATGTTTTGTAT 57.406 30.769 0.00 0.00 0.00 2.29
2120 2240 8.546597 AACATGGCTTAACAAAAATTATCACC 57.453 30.769 0.00 0.00 0.00 4.02
2194 2314 9.374838 AGTTTAAAACGGTCGAGTGAAATATAT 57.625 29.630 0.00 0.00 36.23 0.86
2195 2315 8.761575 AGTTTAAAACGGTCGAGTGAAATATA 57.238 30.769 0.00 0.00 36.23 0.86
2196 2316 7.662604 AGTTTAAAACGGTCGAGTGAAATAT 57.337 32.000 0.00 0.00 36.23 1.28
2197 2317 7.481275 AAGTTTAAAACGGTCGAGTGAAATA 57.519 32.000 0.00 0.00 36.23 1.40
2198 2318 5.996669 AGTTTAAAACGGTCGAGTGAAAT 57.003 34.783 0.00 0.00 36.23 2.17
2199 2319 5.799681 AAGTTTAAAACGGTCGAGTGAAA 57.200 34.783 0.00 0.00 36.23 2.69
2200 2320 5.799681 AAAGTTTAAAACGGTCGAGTGAA 57.200 34.783 0.00 0.00 36.23 3.18
2204 2324 5.849604 GGATGAAAAGTTTAAAACGGTCGAG 59.150 40.000 0.00 0.00 36.23 4.04
2215 2335 6.262273 AGTTTCGAGCTTGGATGAAAAGTTTA 59.738 34.615 0.00 0.00 32.65 2.01
2216 2336 5.067805 AGTTTCGAGCTTGGATGAAAAGTTT 59.932 36.000 0.00 0.00 32.65 2.66
2217 2337 4.580580 AGTTTCGAGCTTGGATGAAAAGTT 59.419 37.500 0.00 0.00 32.65 2.66
2228 2348 1.784525 AAGACCGAGTTTCGAGCTTG 58.215 50.000 0.00 0.00 43.74 4.01
2232 2352 2.750948 TGGAAAAGACCGAGTTTCGAG 58.249 47.619 0.00 0.00 43.74 4.04
2234 2354 4.449743 TGTATTGGAAAAGACCGAGTTTCG 59.550 41.667 0.00 0.00 40.07 3.46
2276 2396 7.113658 TGCCTTGTTCACAATTTACCTTTTA 57.886 32.000 0.00 0.00 35.02 1.52
2278 2398 5.606348 TGCCTTGTTCACAATTTACCTTT 57.394 34.783 0.00 0.00 35.02 3.11
2280 2400 5.606348 TTTGCCTTGTTCACAATTTACCT 57.394 34.783 0.00 0.00 35.02 3.08
2281 2401 5.988561 TGATTTGCCTTGTTCACAATTTACC 59.011 36.000 0.00 0.00 35.02 2.85
2282 2402 6.478344 TGTGATTTGCCTTGTTCACAATTTAC 59.522 34.615 2.35 0.00 43.88 2.01
2289 2410 5.989551 ATTTTGTGATTTGCCTTGTTCAC 57.010 34.783 0.00 0.00 39.11 3.18
2293 2414 6.114767 AGTCAAATTTTGTGATTTGCCTTGT 58.885 32.000 8.89 0.00 43.42 3.16
2298 2419 6.308766 AGCGATAGTCAAATTTTGTGATTTGC 59.691 34.615 8.89 8.07 43.42 3.68
2304 2425 5.122239 TCCTCAGCGATAGTCAAATTTTGTG 59.878 40.000 8.89 0.00 39.35 3.33
2306 2427 5.801350 TCCTCAGCGATAGTCAAATTTTG 57.199 39.130 2.59 2.59 39.35 2.44
2323 2444 4.439974 GCACAACTTTGACACAATTCCTCA 60.440 41.667 0.00 0.00 0.00 3.86
2331 2452 5.392595 GGTTTTCTAGCACAACTTTGACACA 60.393 40.000 0.00 0.00 0.00 3.72
2332 2453 5.034797 GGTTTTCTAGCACAACTTTGACAC 58.965 41.667 0.00 0.00 0.00 3.67
2333 2454 4.947388 AGGTTTTCTAGCACAACTTTGACA 59.053 37.500 0.00 0.00 0.00 3.58
2334 2455 5.163652 ACAGGTTTTCTAGCACAACTTTGAC 60.164 40.000 0.00 0.00 0.00 3.18
2335 2456 4.947388 ACAGGTTTTCTAGCACAACTTTGA 59.053 37.500 0.00 0.00 0.00 2.69
2336 2457 5.036737 CACAGGTTTTCTAGCACAACTTTG 58.963 41.667 0.00 0.00 0.00 2.77
2353 2476 2.540265 CTTCAGCAGAAGTCACAGGT 57.460 50.000 10.53 0.00 44.97 4.00
2367 2490 8.981724 ATGTTCAATTCAAATGATGTCTTCAG 57.018 30.769 0.00 0.00 37.89 3.02
2382 2505 4.499696 CCGGGCAAAGGATATGTTCAATTC 60.500 45.833 0.00 0.00 0.00 2.17
2383 2506 3.384467 CCGGGCAAAGGATATGTTCAATT 59.616 43.478 0.00 0.00 0.00 2.32
2384 2507 2.958355 CCGGGCAAAGGATATGTTCAAT 59.042 45.455 0.00 0.00 0.00 2.57
2385 2508 2.374184 CCGGGCAAAGGATATGTTCAA 58.626 47.619 0.00 0.00 0.00 2.69
2386 2509 1.409521 CCCGGGCAAAGGATATGTTCA 60.410 52.381 8.08 0.00 0.00 3.18
2403 2526 4.202000 TGCAGATTTTATAACATGTGCCCG 60.202 41.667 23.41 0.00 38.59 6.13
2406 2529 5.284079 CCCTGCAGATTTTATAACATGTGC 58.716 41.667 20.96 20.96 39.54 4.57
2502 2625 4.456222 TCGATTCTTGCGGGAAAACAATTA 59.544 37.500 0.00 0.00 0.00 1.40
2507 2630 2.482721 TCTTCGATTCTTGCGGGAAAAC 59.517 45.455 0.00 0.00 0.00 2.43
2508 2631 2.773487 TCTTCGATTCTTGCGGGAAAA 58.227 42.857 0.00 0.00 0.00 2.29
2512 2635 4.875544 TTAATTCTTCGATTCTTGCGGG 57.124 40.909 0.00 0.00 0.00 6.13
2542 2665 8.918202 TTCATTTGGTGATTACTACTGAAAGT 57.082 30.769 0.00 0.00 43.83 2.66
2543 2666 7.965107 GCTTCATTTGGTGATTACTACTGAAAG 59.035 37.037 1.73 0.00 36.54 2.62
2547 2670 6.741992 TGCTTCATTTGGTGATTACTACTG 57.258 37.500 0.00 0.00 36.54 2.74
2559 2682 2.293122 TCCGTTGACTTGCTTCATTTGG 59.707 45.455 0.00 0.00 0.00 3.28
2568 2691 0.608035 TTGGGGATCCGTTGACTTGC 60.608 55.000 5.45 0.00 35.24 4.01
2697 2823 0.242825 TAGGACACGTGAGGAAAGCG 59.757 55.000 25.01 0.00 0.00 4.68
2747 2873 1.986757 GAGAGCCTCCTCCACTGCA 60.987 63.158 0.00 0.00 38.96 4.41
2867 2993 3.059982 CCCTCGTGCTCAGAACCA 58.940 61.111 0.00 0.00 0.00 3.67
2869 2995 2.435059 GGCCCTCGTGCTCAGAAC 60.435 66.667 0.00 0.00 0.00 3.01
2876 3002 2.512515 GTCTCATGGCCCTCGTGC 60.513 66.667 0.00 0.00 32.54 5.34
2880 3006 0.259938 AAATGGGTCTCATGGCCCTC 59.740 55.000 17.56 0.00 45.06 4.30
2885 3011 4.221262 ACAATGAACAAATGGGTCTCATGG 59.779 41.667 0.00 0.00 35.99 3.66
2898 3024 8.511604 AAGAGAGAAGAAAGAACAATGAACAA 57.488 30.769 0.00 0.00 0.00 2.83
2936 3062 2.734755 TTGCCCTCCATCATCGAAAT 57.265 45.000 0.00 0.00 0.00 2.17
2941 3067 3.448301 TGTCAAATTTGCCCTCCATCATC 59.552 43.478 13.54 0.00 0.00 2.92
2942 3068 3.443052 TGTCAAATTTGCCCTCCATCAT 58.557 40.909 13.54 0.00 0.00 2.45
2943 3069 2.886913 TGTCAAATTTGCCCTCCATCA 58.113 42.857 13.54 0.54 0.00 3.07
2944 3070 3.959535 TTGTCAAATTTGCCCTCCATC 57.040 42.857 13.54 0.00 0.00 3.51
2945 3071 4.914177 ATTTGTCAAATTTGCCCTCCAT 57.086 36.364 13.54 0.00 0.00 3.41
2946 3072 4.703379 AATTTGTCAAATTTGCCCTCCA 57.297 36.364 16.26 2.39 37.84 3.86
2969 3095 9.739276 TCTGTGATTTGATTTTGTCTATAGGTT 57.261 29.630 0.00 0.00 0.00 3.50
2970 3096 9.739276 TTCTGTGATTTGATTTTGTCTATAGGT 57.261 29.630 0.00 0.00 0.00 3.08
2975 3101 9.897744 GTTCATTCTGTGATTTGATTTTGTCTA 57.102 29.630 0.00 0.00 36.54 2.59
2976 3102 8.636213 AGTTCATTCTGTGATTTGATTTTGTCT 58.364 29.630 0.00 0.00 36.54 3.41
2977 3103 8.697067 CAGTTCATTCTGTGATTTGATTTTGTC 58.303 33.333 0.00 0.00 36.54 3.18
2978 3104 8.199449 ACAGTTCATTCTGTGATTTGATTTTGT 58.801 29.630 0.00 0.00 45.40 2.83
2979 3105 8.583810 ACAGTTCATTCTGTGATTTGATTTTG 57.416 30.769 0.00 0.00 45.40 2.44
2980 3106 7.869429 GGACAGTTCATTCTGTGATTTGATTTT 59.131 33.333 4.06 0.00 46.81 1.82
2981 3107 7.373493 GGACAGTTCATTCTGTGATTTGATTT 58.627 34.615 4.06 0.00 46.81 2.17
2982 3108 6.348786 CGGACAGTTCATTCTGTGATTTGATT 60.349 38.462 4.06 0.00 46.81 2.57
2983 3109 5.122869 CGGACAGTTCATTCTGTGATTTGAT 59.877 40.000 4.06 0.00 46.81 2.57
2984 3110 4.452114 CGGACAGTTCATTCTGTGATTTGA 59.548 41.667 4.06 0.00 46.81 2.69
2985 3111 4.214119 ACGGACAGTTCATTCTGTGATTTG 59.786 41.667 4.06 0.00 46.81 2.32
2986 3112 4.389374 ACGGACAGTTCATTCTGTGATTT 58.611 39.130 4.06 0.00 46.81 2.17
2987 3113 4.008074 ACGGACAGTTCATTCTGTGATT 57.992 40.909 4.06 0.00 46.81 2.57
2988 3114 3.685139 ACGGACAGTTCATTCTGTGAT 57.315 42.857 4.06 0.00 46.81 3.06
2990 3116 2.754472 TCACGGACAGTTCATTCTGTG 58.246 47.619 4.06 4.48 46.81 3.66
2992 3118 3.809832 AGTTTCACGGACAGTTCATTCTG 59.190 43.478 0.00 0.00 40.80 3.02
2993 3119 4.073293 AGTTTCACGGACAGTTCATTCT 57.927 40.909 0.00 0.00 0.00 2.40
2994 3120 6.481954 AATAGTTTCACGGACAGTTCATTC 57.518 37.500 0.00 0.00 0.00 2.67
2995 3121 6.485313 TGAAATAGTTTCACGGACAGTTCATT 59.515 34.615 1.24 0.00 44.21 2.57
2996 3122 5.995282 TGAAATAGTTTCACGGACAGTTCAT 59.005 36.000 1.24 0.00 44.21 2.57
2997 3123 5.361427 TGAAATAGTTTCACGGACAGTTCA 58.639 37.500 1.24 0.00 44.21 3.18
2998 3124 5.917541 TGAAATAGTTTCACGGACAGTTC 57.082 39.130 1.24 0.00 44.21 3.01
3008 3134 1.463056 CAGCCGCGTGAAATAGTTTCA 59.537 47.619 4.92 1.24 46.68 2.69
3009 3135 1.730064 TCAGCCGCGTGAAATAGTTTC 59.270 47.619 4.92 0.00 40.08 2.78
3010 3136 1.463444 GTCAGCCGCGTGAAATAGTTT 59.537 47.619 4.92 0.00 0.00 2.66
3011 3137 1.076332 GTCAGCCGCGTGAAATAGTT 58.924 50.000 4.92 0.00 0.00 2.24
3012 3138 0.739813 GGTCAGCCGCGTGAAATAGT 60.740 55.000 4.92 0.00 0.00 2.12
3013 3139 0.739462 TGGTCAGCCGCGTGAAATAG 60.739 55.000 4.92 0.00 37.67 1.73
3014 3140 0.739462 CTGGTCAGCCGCGTGAAATA 60.739 55.000 4.92 0.00 37.67 1.40
3015 3141 2.031919 TGGTCAGCCGCGTGAAAT 59.968 55.556 4.92 0.00 37.67 2.17
3016 3142 2.664851 CTGGTCAGCCGCGTGAAA 60.665 61.111 4.92 0.00 37.67 2.69
3017 3143 3.923864 ACTGGTCAGCCGCGTGAA 61.924 61.111 4.92 0.00 37.67 3.18
3018 3144 4.662961 CACTGGTCAGCCGCGTGA 62.663 66.667 4.92 0.00 39.59 4.35
3025 3151 3.605749 TTAGGCGCCACTGGTCAGC 62.606 63.158 31.54 0.00 0.00 4.26
3026 3152 1.741770 GTTAGGCGCCACTGGTCAG 60.742 63.158 31.54 0.00 0.00 3.51
3027 3153 2.167398 GAGTTAGGCGCCACTGGTCA 62.167 60.000 31.54 0.02 0.00 4.02
3028 3154 1.448013 GAGTTAGGCGCCACTGGTC 60.448 63.158 31.54 14.49 0.00 4.02
3029 3155 1.889530 GAGAGTTAGGCGCCACTGGT 61.890 60.000 31.54 13.34 0.00 4.00
3030 3156 1.153549 GAGAGTTAGGCGCCACTGG 60.154 63.158 31.54 0.00 0.00 4.00
3031 3157 0.176680 ATGAGAGTTAGGCGCCACTG 59.823 55.000 31.54 0.00 0.00 3.66
3032 3158 0.176680 CATGAGAGTTAGGCGCCACT 59.823 55.000 31.54 24.63 0.00 4.00
3033 3159 1.432270 GCATGAGAGTTAGGCGCCAC 61.432 60.000 31.54 19.69 0.00 5.01
3034 3160 1.153369 GCATGAGAGTTAGGCGCCA 60.153 57.895 31.54 12.31 0.00 5.69
3035 3161 2.240500 CGCATGAGAGTTAGGCGCC 61.241 63.158 21.89 21.89 41.27 6.53
3036 3162 3.313750 CGCATGAGAGTTAGGCGC 58.686 61.111 0.00 0.00 41.27 6.53
3038 3164 2.240500 CGGCGCATGAGAGTTAGGC 61.241 63.158 10.83 0.00 0.00 3.93
3039 3165 2.240500 GCGGCGCATGAGAGTTAGG 61.241 63.158 29.21 0.00 0.00 2.69
3040 3166 1.519234 TGCGGCGCATGAGAGTTAG 60.519 57.895 33.07 0.00 31.71 2.34
3041 3167 1.809619 GTGCGGCGCATGAGAGTTA 60.810 57.895 38.43 8.50 41.91 2.24
3042 3168 2.225791 TAGTGCGGCGCATGAGAGTT 62.226 55.000 38.43 18.32 41.91 3.01
3043 3169 2.619840 CTAGTGCGGCGCATGAGAGT 62.620 60.000 38.43 19.41 41.91 3.24
3044 3170 1.948138 CTAGTGCGGCGCATGAGAG 60.948 63.158 38.43 25.68 41.91 3.20
3045 3171 2.104928 CTAGTGCGGCGCATGAGA 59.895 61.111 38.43 20.99 41.91 3.27
3046 3172 2.202797 ACTAGTGCGGCGCATGAG 60.203 61.111 38.43 34.30 41.91 2.90
3047 3173 2.509111 CACTAGTGCGGCGCATGA 60.509 61.111 38.43 26.06 41.91 3.07
3057 3183 2.034879 CCCAGGCGTTGCACTAGTG 61.035 63.158 18.93 18.93 0.00 2.74
3058 3184 2.172483 CTCCCAGGCGTTGCACTAGT 62.172 60.000 0.00 0.00 0.00 2.57
3059 3185 1.448540 CTCCCAGGCGTTGCACTAG 60.449 63.158 0.00 0.00 0.00 2.57
3060 3186 2.662596 CTCCCAGGCGTTGCACTA 59.337 61.111 0.00 0.00 0.00 2.74
3062 3188 3.605749 TAGCTCCCAGGCGTTGCAC 62.606 63.158 0.00 0.00 37.29 4.57
3063 3189 3.315142 CTAGCTCCCAGGCGTTGCA 62.315 63.158 0.00 0.00 37.29 4.08
3064 3190 2.512515 CTAGCTCCCAGGCGTTGC 60.513 66.667 0.00 0.00 37.29 4.17
3065 3191 2.187946 CCTAGCTCCCAGGCGTTG 59.812 66.667 0.00 0.00 37.29 4.10
3078 3204 2.279784 GCCTAGTGCAGCGCCTAG 60.280 66.667 2.29 7.66 40.77 3.02
3094 3220 1.068250 CCTAGCTCCTAGGCGTTGC 59.932 63.158 2.96 5.87 45.64 4.17
3101 3227 0.103937 GTGTGCAGCCTAGCTCCTAG 59.896 60.000 0.00 0.00 36.40 3.02
3102 3228 0.324738 AGTGTGCAGCCTAGCTCCTA 60.325 55.000 0.00 0.00 36.40 2.94
3103 3229 1.611851 AGTGTGCAGCCTAGCTCCT 60.612 57.895 0.00 0.00 36.40 3.69
3104 3230 1.449246 CAGTGTGCAGCCTAGCTCC 60.449 63.158 0.00 0.00 36.40 4.70
3105 3231 0.739112 GTCAGTGTGCAGCCTAGCTC 60.739 60.000 0.00 0.00 36.40 4.09
3106 3232 1.190833 AGTCAGTGTGCAGCCTAGCT 61.191 55.000 0.00 0.00 40.77 3.32
3107 3233 0.321122 AAGTCAGTGTGCAGCCTAGC 60.321 55.000 0.00 0.00 0.00 3.42
3108 3234 2.232452 ACTAAGTCAGTGTGCAGCCTAG 59.768 50.000 0.00 0.00 35.62 3.02
3109 3235 2.248248 ACTAAGTCAGTGTGCAGCCTA 58.752 47.619 0.00 0.00 35.62 3.93
3110 3236 1.051812 ACTAAGTCAGTGTGCAGCCT 58.948 50.000 0.00 0.00 35.62 4.58
3111 3237 2.743636 TACTAAGTCAGTGTGCAGCC 57.256 50.000 0.00 0.00 38.24 4.85
3112 3238 5.613358 AAATTACTAAGTCAGTGTGCAGC 57.387 39.130 0.00 0.00 38.24 5.25
3113 3239 7.171508 TCAGAAAATTACTAAGTCAGTGTGCAG 59.828 37.037 0.00 0.00 38.24 4.41
3114 3240 6.989759 TCAGAAAATTACTAAGTCAGTGTGCA 59.010 34.615 0.00 0.00 38.24 4.57
3115 3241 7.421530 TCAGAAAATTACTAAGTCAGTGTGC 57.578 36.000 0.00 0.00 38.24 4.57
3116 3242 9.208022 TGATCAGAAAATTACTAAGTCAGTGTG 57.792 33.333 0.00 0.00 38.24 3.82
3117 3243 9.209175 GTGATCAGAAAATTACTAAGTCAGTGT 57.791 33.333 0.00 0.00 38.24 3.55
3118 3244 9.208022 TGTGATCAGAAAATTACTAAGTCAGTG 57.792 33.333 0.00 0.00 38.24 3.66
3119 3245 9.209175 GTGTGATCAGAAAATTACTAAGTCAGT 57.791 33.333 0.00 0.00 41.62 3.41
3120 3246 8.376203 CGTGTGATCAGAAAATTACTAAGTCAG 58.624 37.037 0.00 0.00 0.00 3.51
3121 3247 7.330946 CCGTGTGATCAGAAAATTACTAAGTCA 59.669 37.037 0.00 0.00 0.00 3.41
3122 3248 7.201530 CCCGTGTGATCAGAAAATTACTAAGTC 60.202 40.741 0.00 0.00 0.00 3.01
3123 3249 6.594159 CCCGTGTGATCAGAAAATTACTAAGT 59.406 38.462 0.00 0.00 0.00 2.24
3124 3250 6.594159 ACCCGTGTGATCAGAAAATTACTAAG 59.406 38.462 0.00 0.00 0.00 2.18
3125 3251 6.370442 CACCCGTGTGATCAGAAAATTACTAA 59.630 38.462 0.00 0.00 45.76 2.24
3126 3252 5.872617 CACCCGTGTGATCAGAAAATTACTA 59.127 40.000 0.00 0.00 45.76 1.82
3127 3253 4.695455 CACCCGTGTGATCAGAAAATTACT 59.305 41.667 0.00 0.00 45.76 2.24
3128 3254 4.671766 GCACCCGTGTGATCAGAAAATTAC 60.672 45.833 0.90 0.00 45.76 1.89
3129 3255 3.438781 GCACCCGTGTGATCAGAAAATTA 59.561 43.478 0.90 0.00 45.76 1.40
3130 3256 2.228822 GCACCCGTGTGATCAGAAAATT 59.771 45.455 0.90 0.00 45.76 1.82
3131 3257 1.812571 GCACCCGTGTGATCAGAAAAT 59.187 47.619 0.90 0.00 45.76 1.82
3132 3258 1.234821 GCACCCGTGTGATCAGAAAA 58.765 50.000 0.90 0.00 45.76 2.29
3133 3259 0.948623 CGCACCCGTGTGATCAGAAA 60.949 55.000 0.90 0.00 45.76 2.52
3134 3260 1.374125 CGCACCCGTGTGATCAGAA 60.374 57.895 0.90 0.00 45.76 3.02
3135 3261 2.261361 CGCACCCGTGTGATCAGA 59.739 61.111 0.90 0.00 45.76 3.27
3136 3262 2.261361 TCGCACCCGTGTGATCAG 59.739 61.111 0.90 0.00 45.76 2.90
3160 3286 0.595053 CACAGATAGGCGCTACACGG 60.595 60.000 7.64 0.58 43.93 4.94
3162 3288 1.269309 CCTCACAGATAGGCGCTACAC 60.269 57.143 7.64 0.00 0.00 2.90
3163 3289 1.032794 CCTCACAGATAGGCGCTACA 58.967 55.000 7.64 0.00 0.00 2.74
3164 3290 3.875838 CCTCACAGATAGGCGCTAC 57.124 57.895 7.64 0.00 0.00 3.58
3170 3296 0.108186 TGCAACGCCTCACAGATAGG 60.108 55.000 0.00 0.00 37.17 2.57
3171 3297 1.002366 GTGCAACGCCTCACAGATAG 58.998 55.000 0.00 0.00 33.63 2.08
3172 3298 0.320050 TGTGCAACGCCTCACAGATA 59.680 50.000 0.00 0.00 42.39 1.98
3173 3299 1.071299 TGTGCAACGCCTCACAGAT 59.929 52.632 0.00 0.00 42.39 2.90
3174 3300 2.503546 TGTGCAACGCCTCACAGA 59.496 55.556 0.00 0.00 42.39 3.41
3176 3302 2.179547 CACTGTGCAACGCCTCACA 61.180 57.895 0.00 4.54 42.39 3.58
3177 3303 0.878523 TACACTGTGCAACGCCTCAC 60.879 55.000 7.90 0.00 42.39 3.51
3178 3304 0.599991 CTACACTGTGCAACGCCTCA 60.600 55.000 7.90 0.00 42.39 3.86
3179 3305 0.600255 ACTACACTGTGCAACGCCTC 60.600 55.000 7.90 0.00 42.39 4.70
3180 3306 0.880278 CACTACACTGTGCAACGCCT 60.880 55.000 7.90 0.00 42.39 5.52
3181 3307 1.157870 ACACTACACTGTGCAACGCC 61.158 55.000 7.90 0.00 42.39 5.68
3182 3308 0.042188 CACACTACACTGTGCAACGC 60.042 55.000 7.90 0.00 42.39 4.84
3183 3309 0.581529 CCACACTACACTGTGCAACG 59.418 55.000 7.90 0.00 42.39 4.10
3184 3310 0.307760 GCCACACTACACTGTGCAAC 59.692 55.000 7.90 0.00 40.33 4.17
3185 3311 1.157257 CGCCACACTACACTGTGCAA 61.157 55.000 7.90 0.00 40.33 4.08
3186 3312 1.594021 CGCCACACTACACTGTGCA 60.594 57.895 7.90 0.00 40.33 4.57
3187 3313 2.954753 GCGCCACACTACACTGTGC 61.955 63.158 7.90 0.00 40.33 4.57
3188 3314 2.317609 GGCGCCACACTACACTGTG 61.318 63.158 24.80 6.19 41.19 3.66
3189 3315 2.030562 GGCGCCACACTACACTGT 59.969 61.111 24.80 0.00 0.00 3.55
3190 3316 1.291877 GAAGGCGCCACACTACACTG 61.292 60.000 31.54 0.00 0.00 3.66
3191 3317 1.004918 GAAGGCGCCACACTACACT 60.005 57.895 31.54 0.00 0.00 3.55
3192 3318 2.380410 CGAAGGCGCCACACTACAC 61.380 63.158 31.54 8.98 0.00 2.90
3193 3319 2.048597 CGAAGGCGCCACACTACA 60.049 61.111 31.54 0.00 0.00 2.74
3194 3320 2.048503 ACGAAGGCGCCACACTAC 60.049 61.111 31.54 11.50 42.48 2.73
3195 3321 2.048597 CACGAAGGCGCCACACTA 60.049 61.111 31.54 0.00 42.48 2.74
3196 3322 4.235762 ACACGAAGGCGCCACACT 62.236 61.111 31.54 9.96 42.48 3.55
3197 3323 3.712881 GACACGAAGGCGCCACAC 61.713 66.667 31.54 17.81 42.48 3.82
3205 3331 4.351938 TGACGCCCGACACGAAGG 62.352 66.667 0.00 0.00 0.00 3.46
3206 3332 3.103911 GTGACGCCCGACACGAAG 61.104 66.667 7.43 0.00 32.16 3.79
3207 3333 3.902086 TGTGACGCCCGACACGAA 61.902 61.111 15.80 0.31 42.06 3.85
3208 3334 4.634133 GTGTGACGCCCGACACGA 62.634 66.667 15.80 5.46 42.06 4.35
3209 3335 4.934942 TGTGTGACGCCCGACACG 62.935 66.667 15.80 0.00 44.55 4.49
3210 3336 1.707239 TTTTGTGTGACGCCCGACAC 61.707 55.000 14.47 14.47 42.40 3.67
3211 3337 1.025113 TTTTTGTGTGACGCCCGACA 61.025 50.000 0.00 0.00 0.00 4.35
3212 3338 0.316689 CTTTTTGTGTGACGCCCGAC 60.317 55.000 0.00 0.00 0.00 4.79
3213 3339 1.440938 CCTTTTTGTGTGACGCCCGA 61.441 55.000 0.00 0.00 0.00 5.14
3214 3340 1.008995 CCTTTTTGTGTGACGCCCG 60.009 57.895 0.00 0.00 0.00 6.13
3215 3341 0.030235 GACCTTTTTGTGTGACGCCC 59.970 55.000 0.00 0.00 0.00 6.13
3216 3342 0.736053 TGACCTTTTTGTGTGACGCC 59.264 50.000 0.00 0.00 0.00 5.68
3217 3343 1.859998 GCTGACCTTTTTGTGTGACGC 60.860 52.381 0.00 0.00 0.00 5.19
3218 3344 1.268539 GGCTGACCTTTTTGTGTGACG 60.269 52.381 0.00 0.00 0.00 4.35
3219 3345 1.268539 CGGCTGACCTTTTTGTGTGAC 60.269 52.381 0.00 0.00 0.00 3.67
3220 3346 1.021202 CGGCTGACCTTTTTGTGTGA 58.979 50.000 0.00 0.00 0.00 3.58
3221 3347 0.594796 GCGGCTGACCTTTTTGTGTG 60.595 55.000 0.00 0.00 0.00 3.82
3222 3348 1.733526 GCGGCTGACCTTTTTGTGT 59.266 52.632 0.00 0.00 0.00 3.72
3223 3349 1.370414 CGCGGCTGACCTTTTTGTG 60.370 57.895 0.00 0.00 0.00 3.33
3224 3350 1.822186 ACGCGGCTGACCTTTTTGT 60.822 52.632 12.47 0.00 0.00 2.83
3225 3351 1.370414 CACGCGGCTGACCTTTTTG 60.370 57.895 12.47 0.00 0.00 2.44
3226 3352 1.098712 TTCACGCGGCTGACCTTTTT 61.099 50.000 12.47 0.00 0.00 1.94
3227 3353 1.098712 TTTCACGCGGCTGACCTTTT 61.099 50.000 12.47 0.00 0.00 2.27
3228 3354 0.889186 ATTTCACGCGGCTGACCTTT 60.889 50.000 12.47 0.00 0.00 3.11
3229 3355 0.036765 TATTTCACGCGGCTGACCTT 60.037 50.000 12.47 0.00 0.00 3.50
3230 3356 0.460284 CTATTTCACGCGGCTGACCT 60.460 55.000 12.47 0.00 0.00 3.85
3231 3357 0.739813 ACTATTTCACGCGGCTGACC 60.740 55.000 12.47 0.00 0.00 4.02
3232 3358 1.076332 AACTATTTCACGCGGCTGAC 58.924 50.000 12.47 0.00 0.00 3.51
3233 3359 1.730064 GAAACTATTTCACGCGGCTGA 59.270 47.619 12.47 2.44 39.45 4.26
3234 3360 1.463056 TGAAACTATTTCACGCGGCTG 59.537 47.619 12.47 0.00 44.21 4.85
3235 3361 1.803334 TGAAACTATTTCACGCGGCT 58.197 45.000 12.47 0.00 44.21 5.52
3245 3371 9.886132 ACAGAATAAACTATCCGTGAAACTATT 57.114 29.630 0.00 0.00 31.75 1.73
3246 3372 9.314321 CACAGAATAAACTATCCGTGAAACTAT 57.686 33.333 0.00 0.00 31.75 2.12
3247 3373 8.525316 TCACAGAATAAACTATCCGTGAAACTA 58.475 33.333 0.00 0.00 31.75 2.24
3248 3374 7.383687 TCACAGAATAAACTATCCGTGAAACT 58.616 34.615 0.00 0.00 31.75 2.66
3249 3375 7.591006 TCACAGAATAAACTATCCGTGAAAC 57.409 36.000 0.00 0.00 0.00 2.78
3250 3376 8.786826 AATCACAGAATAAACTATCCGTGAAA 57.213 30.769 0.00 0.00 35.92 2.69
3251 3377 8.664798 CAAATCACAGAATAAACTATCCGTGAA 58.335 33.333 0.00 0.00 35.92 3.18
3252 3378 8.038351 TCAAATCACAGAATAAACTATCCGTGA 58.962 33.333 0.00 0.00 36.65 4.35
3253 3379 8.196802 TCAAATCACAGAATAAACTATCCGTG 57.803 34.615 0.00 0.00 0.00 4.94
3254 3380 8.964476 ATCAAATCACAGAATAAACTATCCGT 57.036 30.769 0.00 0.00 0.00 4.69
3260 3386 9.003658 AGACGAAATCAAATCACAGAATAAACT 57.996 29.630 0.00 0.00 0.00 2.66
3265 3391 9.265901 CCTATAGACGAAATCAAATCACAGAAT 57.734 33.333 0.00 0.00 0.00 2.40
3266 3392 8.258007 ACCTATAGACGAAATCAAATCACAGAA 58.742 33.333 0.00 0.00 0.00 3.02
3267 3393 7.782049 ACCTATAGACGAAATCAAATCACAGA 58.218 34.615 0.00 0.00 0.00 3.41
3268 3394 7.706607 TGACCTATAGACGAAATCAAATCACAG 59.293 37.037 0.00 0.00 0.00 3.66
3269 3395 7.552459 TGACCTATAGACGAAATCAAATCACA 58.448 34.615 0.00 0.00 0.00 3.58
3270 3396 8.420374 TTGACCTATAGACGAAATCAAATCAC 57.580 34.615 0.00 0.00 0.00 3.06
3271 3397 9.613428 ATTTGACCTATAGACGAAATCAAATCA 57.387 29.630 0.00 0.00 39.78 2.57
3275 3401 9.226606 ACAAATTTGACCTATAGACGAAATCAA 57.773 29.630 24.64 0.00 0.00 2.57
3276 3402 8.786826 ACAAATTTGACCTATAGACGAAATCA 57.213 30.769 24.64 0.00 0.00 2.57
3277 3403 8.879759 TGACAAATTTGACCTATAGACGAAATC 58.120 33.333 24.64 6.30 0.00 2.17
3278 3404 8.786826 TGACAAATTTGACCTATAGACGAAAT 57.213 30.769 24.64 0.00 0.00 2.17
3279 3405 8.610248 TTGACAAATTTGACCTATAGACGAAA 57.390 30.769 24.64 2.44 0.00 3.46
3280 3406 8.610248 TTTGACAAATTTGACCTATAGACGAA 57.390 30.769 24.64 3.11 0.00 3.85
3281 3407 8.786826 ATTTGACAAATTTGACCTATAGACGA 57.213 30.769 24.64 0.00 0.00 4.20
3282 3408 9.840427 AAATTTGACAAATTTGACCTATAGACG 57.160 29.630 29.31 0.00 46.30 4.18
3300 3426 3.192466 GCTCCATCATGGCAAATTTGAC 58.808 45.455 22.31 19.99 37.47 3.18
3301 3427 2.832733 TGCTCCATCATGGCAAATTTGA 59.167 40.909 22.31 1.94 37.47 2.69
3302 3428 3.254470 TGCTCCATCATGGCAAATTTG 57.746 42.857 14.03 14.03 37.47 2.32
3303 3429 3.262405 ACTTGCTCCATCATGGCAAATTT 59.738 39.130 0.00 0.00 43.79 1.82
3304 3430 2.835764 ACTTGCTCCATCATGGCAAATT 59.164 40.909 0.00 0.00 43.79 1.82
3305 3431 2.167693 CACTTGCTCCATCATGGCAAAT 59.832 45.455 0.00 0.00 43.79 2.32
3306 3432 1.546923 CACTTGCTCCATCATGGCAAA 59.453 47.619 0.00 0.00 43.79 3.68
3307 3433 1.179152 CACTTGCTCCATCATGGCAA 58.821 50.000 0.00 0.00 42.54 4.52
3308 3434 0.328926 TCACTTGCTCCATCATGGCA 59.671 50.000 0.00 0.00 37.47 4.92
3309 3435 1.404391 CTTCACTTGCTCCATCATGGC 59.596 52.381 0.00 0.00 37.47 4.40
3310 3436 2.995283 TCTTCACTTGCTCCATCATGG 58.005 47.619 0.00 0.00 39.43 3.66
3311 3437 4.452825 AGATCTTCACTTGCTCCATCATG 58.547 43.478 0.00 0.00 0.00 3.07
3354 3480 2.144362 GTACAACCACCACGTACGC 58.856 57.895 16.72 0.00 0.00 4.42
3356 3482 2.697431 TACGTACAACCACCACGTAC 57.303 50.000 2.38 0.00 46.23 3.67
3357 3483 2.225491 GAGTACGTACAACCACCACGTA 59.775 50.000 26.55 2.38 46.23 3.57
3359 3485 1.267806 AGAGTACGTACAACCACCACG 59.732 52.381 26.55 0.00 41.32 4.94
3360 3486 2.666619 CGAGAGTACGTACAACCACCAC 60.667 54.545 26.55 0.00 0.00 4.16
3375 3501 1.228184 ACACACGAGGGTCGAGAGT 60.228 57.895 2.82 0.00 43.74 3.24
3392 3518 2.140717 CGAACAAACCACTAGGACCAC 58.859 52.381 0.00 0.00 38.69 4.16
3406 3533 0.400213 ATCTTCACAGCCCCGAACAA 59.600 50.000 0.00 0.00 0.00 2.83
3408 3535 0.321653 ACATCTTCACAGCCCCGAAC 60.322 55.000 0.00 0.00 0.00 3.95
3411 3538 1.066143 ACTTACATCTTCACAGCCCCG 60.066 52.381 0.00 0.00 0.00 5.73
3444 3573 4.039973 CCAAGTTGACCTCACTACCTACAA 59.960 45.833 3.87 0.00 0.00 2.41
3468 3597 7.727331 TCAAATTTTCCCAACACATTTGATC 57.273 32.000 0.00 0.00 38.39 2.92
3477 3606 2.708325 CCCCCTTCAAATTTTCCCAACA 59.292 45.455 0.00 0.00 0.00 3.33
3483 3612 4.955811 AGTTGACCCCCTTCAAATTTTC 57.044 40.909 0.00 0.00 37.24 2.29
3505 3635 3.225798 GCCAGGCCAAACTGTGCA 61.226 61.111 5.01 0.00 36.75 4.57
3510 3640 1.971695 GTAAGCGCCAGGCCAAACT 60.972 57.895 5.01 0.00 45.17 2.66
3555 3685 7.552687 GGTAATCCTTGTCAAGTTGTCATATCA 59.447 37.037 11.61 0.00 0.00 2.15
3613 3743 2.166829 ACAGTGTCAGCAACCAACAAA 58.833 42.857 0.00 0.00 0.00 2.83
3614 3744 1.832883 ACAGTGTCAGCAACCAACAA 58.167 45.000 0.00 0.00 0.00 2.83
3615 3745 2.700722 TACAGTGTCAGCAACCAACA 57.299 45.000 0.00 0.00 0.00 3.33
3616 3746 4.568152 ATTTACAGTGTCAGCAACCAAC 57.432 40.909 0.00 0.00 0.00 3.77
3628 3758 3.181471 TGGGTGGTTGCAAATTTACAGTG 60.181 43.478 0.00 0.00 0.00 3.66
3691 3822 4.142271 TGAAAAGGTTGCTCGAAACACAAT 60.142 37.500 2.63 0.00 0.00 2.71
3727 3858 9.896645 ACAACTATAACAGATCTCAATGACATT 57.103 29.630 0.00 0.00 0.00 2.71
3728 3859 9.896645 AACAACTATAACAGATCTCAATGACAT 57.103 29.630 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.