Multiple sequence alignment - TraesCS5D01G389400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G389400 chr5D 100.000 2510 0 0 1 2510 458748153 458745644 0.000000e+00 4636.0
1 TraesCS5D01G389400 chr5D 89.706 68 2 1 2429 2491 458709169 458709102 5.750000e-12 82.4
2 TraesCS5D01G389400 chr5B 86.757 2001 126 64 569 2493 562371860 562369923 0.000000e+00 2098.0
3 TraesCS5D01G389400 chr5B 86.847 555 35 12 14 533 562372411 562371860 1.000000e-163 586.0
4 TraesCS5D01G389400 chr5B 97.436 78 2 0 2191 2268 562269258 562269181 1.570000e-27 134.0
5 TraesCS5D01G389400 chr5B 95.238 42 1 1 1607 1648 562269847 562269807 5.800000e-07 65.8
6 TraesCS5D01G389400 chr5A 89.449 1289 72 35 707 1954 577790405 577789140 0.000000e+00 1568.0
7 TraesCS5D01G389400 chr5A 86.281 605 42 17 1 574 577791376 577790782 9.860000e-174 619.0
8 TraesCS5D01G389400 chr5A 84.906 159 10 6 2234 2379 577788871 577788714 5.590000e-32 148.0
9 TraesCS5D01G389400 chr5A 89.216 102 6 1 2313 2414 577742419 577742323 3.390000e-24 122.0
10 TraesCS5D01G389400 chr3A 84.058 207 30 2 1039 1242 233025337 233025131 1.970000e-46 196.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G389400 chr5D 458745644 458748153 2509 True 4636.000000 4636 100.000000 1 2510 1 chr5D.!!$R2 2509
1 TraesCS5D01G389400 chr5B 562369923 562372411 2488 True 1342.000000 2098 86.802000 14 2493 2 chr5B.!!$R2 2479
2 TraesCS5D01G389400 chr5A 577788714 577791376 2662 True 778.333333 1568 86.878667 1 2379 3 chr5A.!!$R2 2378

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
493 530 0.459237 GTGATCCCACTCACTCGCTG 60.459 60.0 0.0 0.0 41.87 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2444 2944 0.032952 CCCGACGAGGTCTCAAACAA 59.967 55.0 0.0 0.0 38.74 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 6.243900 ACGAGATATATCTAAAACCCGAGGA 58.756 40.000 20.02 0.00 37.25 3.71
98 100 7.453034 TCTTTTGAATATGCGACGTTTCTTAG 58.547 34.615 0.00 0.00 0.00 2.18
260 270 4.366684 CCCCTCCCCCACTGCAAC 62.367 72.222 0.00 0.00 0.00 4.17
262 272 4.366684 CCTCCCCCACTGCAACCC 62.367 72.222 0.00 0.00 0.00 4.11
267 277 1.077265 CCCCACTGCAACCCTCAAT 59.923 57.895 0.00 0.00 0.00 2.57
421 440 2.671130 ATGATTTCGCCGGCAAAAAT 57.329 40.000 27.75 27.75 0.00 1.82
430 449 1.643880 CCGGCAAAAATGAAGCATCC 58.356 50.000 0.00 0.00 0.00 3.51
433 452 2.624636 GGCAAAAATGAAGCATCCCAG 58.375 47.619 0.00 0.00 0.00 4.45
439 458 2.653234 ATGAAGCATCCCAGGACATC 57.347 50.000 0.00 0.00 0.00 3.06
463 482 1.464734 AGTAGTAGCGCTTCAGCTCA 58.535 50.000 18.68 0.00 45.67 4.26
493 530 0.459237 GTGATCCCACTCACTCGCTG 60.459 60.000 0.00 0.00 41.87 5.18
494 531 0.611896 TGATCCCACTCACTCGCTGA 60.612 55.000 0.00 0.00 0.00 4.26
495 532 0.532573 GATCCCACTCACTCGCTGAA 59.467 55.000 0.00 0.00 0.00 3.02
533 574 3.117171 GCACTCTGCTCCTGTGCG 61.117 66.667 0.00 0.00 45.62 5.34
564 609 1.092921 TGTTTCCCACGCACACAGTC 61.093 55.000 0.00 0.00 0.00 3.51
566 611 0.813610 TTTCCCACGCACACAGTCAG 60.814 55.000 0.00 0.00 0.00 3.51
567 612 3.349006 CCCACGCACACAGTCAGC 61.349 66.667 0.00 0.00 0.00 4.26
568 613 3.349006 CCACGCACACAGTCAGCC 61.349 66.667 0.00 0.00 0.00 4.85
600 645 2.461110 CGATTTCGCCGTGGGGAAG 61.461 63.158 16.57 4.20 45.39 3.46
619 664 3.047735 ACGCATGGACACGTCAGA 58.952 55.556 0.00 0.00 38.28 3.27
694 739 3.103911 GCACAACGCGACGCTAGT 61.104 61.111 15.93 10.39 0.00 2.57
706 751 2.286294 CGACGCTAGTAGTACGTTCCAT 59.714 50.000 0.00 0.00 40.69 3.41
707 752 3.490896 CGACGCTAGTAGTACGTTCCATA 59.509 47.826 0.00 0.00 40.69 2.74
708 753 4.375807 CGACGCTAGTAGTACGTTCCATAG 60.376 50.000 0.00 0.00 40.69 2.23
711 1036 4.024218 CGCTAGTAGTACGTTCCATAGCTT 60.024 45.833 14.49 0.00 33.64 3.74
729 1054 2.098770 GCTTAGGTGGTGTACTCTACCG 59.901 54.545 20.54 10.79 41.18 4.02
834 1160 1.694169 TTGGCATCCTCCTCCTCCC 60.694 63.158 0.00 0.00 0.00 4.30
965 1301 5.047660 CCTCTCCTCACCTCGGATTAATAAG 60.048 48.000 0.00 0.00 0.00 1.73
1283 1637 2.509336 CTACTTCGTGCTGCCCGG 60.509 66.667 4.41 0.00 0.00 5.73
1284 1638 4.752879 TACTTCGTGCTGCCCGGC 62.753 66.667 1.04 1.04 0.00 6.13
1491 1845 1.725665 CGACTTCGTGCCGGATCTA 59.274 57.895 5.05 0.00 34.11 1.98
1503 1857 1.227943 GGATCTAGGCGCCATTGCA 60.228 57.895 31.54 7.71 37.32 4.08
1510 1864 1.450312 GGCGCCATTGCAGAGTAGT 60.450 57.895 24.80 0.00 37.32 2.73
1511 1865 0.179084 GGCGCCATTGCAGAGTAGTA 60.179 55.000 24.80 0.00 37.32 1.82
1512 1866 1.212616 GCGCCATTGCAGAGTAGTAG 58.787 55.000 0.00 0.00 37.32 2.57
1519 1873 1.590259 GCAGAGTAGTAGCCGCTGC 60.590 63.158 2.16 0.64 44.11 5.25
1684 2060 2.730672 GCTACGGCTGCACGTTCTG 61.731 63.158 18.37 11.64 46.25 3.02
1742 2124 7.922278 ACATTGCATTGCGTATTATTTTGATCT 59.078 29.630 8.48 0.00 0.00 2.75
1744 2126 7.025485 TGCATTGCGTATTATTTTGATCTGA 57.975 32.000 3.84 0.00 0.00 3.27
1773 2155 1.742268 GAAGGGCTGTCTGAAATCTGC 59.258 52.381 0.00 0.00 0.00 4.26
1776 2158 0.807496 GGCTGTCTGAAATCTGCACC 59.193 55.000 0.00 0.00 0.00 5.01
1785 2167 3.545124 AATCTGCACCGGACGCCAA 62.545 57.895 9.46 1.23 0.00 4.52
1791 2173 4.003788 ACCGGACGCCAAGGTCTG 62.004 66.667 9.46 0.00 41.89 3.51
1792 2174 4.003788 CCGGACGCCAAGGTCTGT 62.004 66.667 0.00 0.00 40.88 3.41
1803 2185 0.249398 AAGGTCTGTCGTGTATGGCC 59.751 55.000 0.00 0.00 0.00 5.36
1839 2221 1.377333 GGGCCTACTGTCTTGCACC 60.377 63.158 0.84 0.00 0.00 5.01
1841 2223 1.004918 GCCTACTGTCTTGCACCGT 60.005 57.895 0.00 0.00 0.00 4.83
1842 2224 1.291877 GCCTACTGTCTTGCACCGTG 61.292 60.000 0.00 0.00 0.00 4.94
1843 2225 1.291877 CCTACTGTCTTGCACCGTGC 61.292 60.000 16.93 16.93 45.29 5.34
1845 2227 1.754380 TACTGTCTTGCACCGTGCCT 61.754 55.000 20.67 0.00 44.23 4.75
1846 2228 1.893808 CTGTCTTGCACCGTGCCTT 60.894 57.895 20.67 0.00 44.23 4.35
1849 2231 1.597854 TCTTGCACCGTGCCTTGAG 60.598 57.895 20.67 12.67 44.23 3.02
1856 2238 0.907704 ACCGTGCCTTGAGTGGGATA 60.908 55.000 0.00 0.00 0.00 2.59
1857 2239 0.462047 CCGTGCCTTGAGTGGGATAC 60.462 60.000 0.00 0.00 0.00 2.24
1917 2300 2.034048 TAGCCATGCGCCCATCGTAA 62.034 55.000 4.18 0.00 41.07 3.18
1923 2306 2.319136 TGCGCCCATCGTAATAAAGT 57.681 45.000 4.18 0.00 41.07 2.66
1929 2312 3.545426 GCCCATCGTAATAAAGTCGTTGC 60.545 47.826 0.00 0.00 0.00 4.17
1950 2339 5.953183 TGCTAAATGGAGTGTATTTTGCTG 58.047 37.500 14.40 0.00 42.57 4.41
1960 2349 3.606346 GTGTATTTTGCTGCGCGTTAATT 59.394 39.130 8.43 0.00 0.00 1.40
1962 2351 2.407521 TTTTGCTGCGCGTTAATTCA 57.592 40.000 8.43 0.00 0.00 2.57
1965 2354 0.871722 TGCTGCGCGTTAATTCAGTT 59.128 45.000 8.43 0.00 0.00 3.16
1970 2359 1.643810 GCGCGTTAATTCAGTTGCTTG 59.356 47.619 8.43 0.00 0.00 4.01
1971 2360 1.643810 CGCGTTAATTCAGTTGCTTGC 59.356 47.619 0.00 0.00 0.00 4.01
1972 2361 2.660490 GCGTTAATTCAGTTGCTTGCA 58.340 42.857 0.00 0.00 0.00 4.08
1973 2362 2.405025 GCGTTAATTCAGTTGCTTGCAC 59.595 45.455 0.00 0.00 0.00 4.57
1974 2363 3.626977 CGTTAATTCAGTTGCTTGCACA 58.373 40.909 0.00 0.00 0.00 4.57
1975 2364 3.421888 CGTTAATTCAGTTGCTTGCACAC 59.578 43.478 0.00 0.00 0.00 3.82
1976 2365 4.610945 GTTAATTCAGTTGCTTGCACACT 58.389 39.130 0.00 0.18 0.00 3.55
1977 2366 3.806625 AATTCAGTTGCTTGCACACTT 57.193 38.095 0.00 0.00 0.00 3.16
1978 2367 2.565210 TTCAGTTGCTTGCACACTTG 57.435 45.000 0.00 0.00 0.00 3.16
2016 2472 2.284331 TGGCGGTAGCTTGGGAGA 60.284 61.111 0.00 0.00 44.37 3.71
2017 2473 2.359169 TGGCGGTAGCTTGGGAGAG 61.359 63.158 0.00 0.00 44.37 3.20
2018 2474 2.501610 GCGGTAGCTTGGGAGAGG 59.498 66.667 0.00 0.00 41.01 3.69
2019 2475 2.058595 GCGGTAGCTTGGGAGAGGA 61.059 63.158 0.00 0.00 41.01 3.71
2020 2476 2.022240 GCGGTAGCTTGGGAGAGGAG 62.022 65.000 0.00 0.00 41.01 3.69
2073 2533 1.463674 AGCAAAGGCCATTTCGGTAG 58.536 50.000 5.01 0.00 42.56 3.18
2380 2873 2.281831 TGCCCGGCGAACAAATCA 60.282 55.556 9.30 0.00 0.00 2.57
2381 2874 1.899054 TGCCCGGCGAACAAATCAA 60.899 52.632 9.30 0.00 0.00 2.57
2382 2875 1.287503 GCCCGGCGAACAAATCAAA 59.712 52.632 9.30 0.00 0.00 2.69
2383 2876 0.108851 GCCCGGCGAACAAATCAAAT 60.109 50.000 9.30 0.00 0.00 2.32
2384 2877 1.671556 GCCCGGCGAACAAATCAAATT 60.672 47.619 9.30 0.00 0.00 1.82
2385 2878 2.258755 CCCGGCGAACAAATCAAATTC 58.741 47.619 9.30 0.00 0.00 2.17
2417 2912 2.421739 CGGGGTCCGGATAAGCAG 59.578 66.667 7.81 0.00 44.15 4.24
2427 2922 1.224722 GGATAAGCAGGCGCAGTAGC 61.225 60.000 10.83 7.15 42.27 3.58
2444 2944 0.977395 AGCAGAAAGAAGGCCGTACT 59.023 50.000 0.00 0.00 0.00 2.73
2446 2946 1.464997 GCAGAAAGAAGGCCGTACTTG 59.535 52.381 11.55 3.72 0.00 3.16
2472 2972 1.454111 CCTCGTCGGGTCCAGATCT 60.454 63.158 0.00 0.00 0.00 2.75
2478 2978 1.689273 GTCGGGTCCAGATCTAATGCT 59.311 52.381 0.00 0.00 0.00 3.79
2493 2993 7.835682 AGATCTAATGCTATGCTATCTGAGACT 59.164 37.037 0.00 0.00 0.00 3.24
2494 2994 7.389803 TCTAATGCTATGCTATCTGAGACTC 57.610 40.000 0.00 0.00 0.00 3.36
2495 2995 7.174413 TCTAATGCTATGCTATCTGAGACTCT 58.826 38.462 3.68 0.00 0.00 3.24
2496 2996 5.648178 ATGCTATGCTATCTGAGACTCTG 57.352 43.478 3.68 3.34 0.00 3.35
2497 2997 4.723309 TGCTATGCTATCTGAGACTCTGA 58.277 43.478 13.70 13.70 0.00 3.27
2498 2998 4.761227 TGCTATGCTATCTGAGACTCTGAG 59.239 45.833 16.07 2.45 0.00 3.35
2499 2999 4.761739 GCTATGCTATCTGAGACTCTGAGT 59.238 45.833 10.66 10.66 0.00 3.41
2500 3000 5.937540 GCTATGCTATCTGAGACTCTGAGTA 59.062 44.000 10.86 5.33 0.00 2.59
2501 3001 6.092670 GCTATGCTATCTGAGACTCTGAGTAG 59.907 46.154 10.86 16.08 0.00 2.57
2502 3002 5.622346 TGCTATCTGAGACTCTGAGTAGA 57.378 43.478 10.86 10.55 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 88 3.243177 GCAGGAATAGCTAAGAAACGTCG 59.757 47.826 0.00 0.00 0.00 5.12
98 100 1.008079 GCGCCAATGCAGGAATAGC 60.008 57.895 0.00 0.00 37.32 2.97
207 209 0.669318 TCACAGAATCGGCGGACAAC 60.669 55.000 7.21 0.00 0.00 3.32
260 270 4.826183 GGAAAAGGAGATGATGATTGAGGG 59.174 45.833 0.00 0.00 0.00 4.30
262 272 4.826183 GGGGAAAAGGAGATGATGATTGAG 59.174 45.833 0.00 0.00 0.00 3.02
267 277 2.196595 ACGGGGAAAAGGAGATGATGA 58.803 47.619 0.00 0.00 0.00 2.92
362 381 1.786937 TCATTGGCCAAACACAAGGT 58.213 45.000 24.71 0.00 31.07 3.50
385 404 2.282407 TCATTCGATCATGTGTGCTGG 58.718 47.619 0.00 0.00 0.00 4.85
421 440 1.288188 TGATGTCCTGGGATGCTTCA 58.712 50.000 1.64 0.00 0.00 3.02
430 449 4.320567 CGCTACTACTACATGATGTCCTGG 60.321 50.000 0.00 0.00 0.00 4.45
433 452 3.253677 AGCGCTACTACTACATGATGTCC 59.746 47.826 8.99 0.00 0.00 4.02
439 458 3.046390 GCTGAAGCGCTACTACTACATG 58.954 50.000 12.05 0.00 0.00 3.21
537 578 3.056328 GTGGGAAACAGAGGGCGC 61.056 66.667 0.00 0.00 0.00 6.53
540 581 1.966451 GTGCGTGGGAAACAGAGGG 60.966 63.158 0.00 0.00 0.00 4.30
551 592 3.349006 GGCTGACTGTGTGCGTGG 61.349 66.667 0.00 0.00 0.00 4.94
564 609 1.230635 CGTTTCTCCCTGTGTGGCTG 61.231 60.000 0.00 0.00 0.00 4.85
566 611 0.321653 ATCGTTTCTCCCTGTGTGGC 60.322 55.000 0.00 0.00 0.00 5.01
567 612 2.185004 AATCGTTTCTCCCTGTGTGG 57.815 50.000 0.00 0.00 0.00 4.17
568 613 2.157668 CGAAATCGTTTCTCCCTGTGTG 59.842 50.000 8.24 0.00 37.52 3.82
692 737 5.298777 CACCTAAGCTATGGAACGTACTACT 59.701 44.000 11.35 0.00 0.00 2.57
693 738 5.506982 CCACCTAAGCTATGGAACGTACTAC 60.507 48.000 11.35 0.00 35.33 2.73
694 739 4.581824 CCACCTAAGCTATGGAACGTACTA 59.418 45.833 11.35 0.00 35.33 1.82
706 751 4.530875 GGTAGAGTACACCACCTAAGCTA 58.469 47.826 0.83 0.00 36.01 3.32
707 752 3.363627 GGTAGAGTACACCACCTAAGCT 58.636 50.000 0.83 0.00 36.01 3.74
708 753 2.098770 CGGTAGAGTACACCACCTAAGC 59.901 54.545 6.37 0.00 35.67 3.09
711 1036 1.915489 TCCGGTAGAGTACACCACCTA 59.085 52.381 0.00 0.00 35.67 3.08
743 1068 2.049526 TGTGCGGACGTGTAGCTG 60.050 61.111 1.60 0.00 0.00 4.24
942 1273 5.565834 GCTTATTAATCCGAGGTGAGGAGAG 60.566 48.000 0.00 0.00 41.66 3.20
943 1274 4.281182 GCTTATTAATCCGAGGTGAGGAGA 59.719 45.833 0.00 0.00 41.66 3.71
1302 1656 3.160047 ATCTCCTCCGCCTGCAGG 61.160 66.667 29.34 29.34 38.53 4.85
1491 1845 1.153289 CTACTCTGCAATGGCGCCT 60.153 57.895 29.70 10.60 45.35 5.52
1503 1857 2.128507 GGGCAGCGGCTACTACTCT 61.129 63.158 9.17 0.00 40.87 3.24
1542 1905 2.683362 CTCGGGTTATTTCTTCTTGCCC 59.317 50.000 0.00 0.00 0.00 5.36
1551 1926 5.741040 CGTAACTCTACACTCGGGTTATTTC 59.259 44.000 0.00 0.00 0.00 2.17
1684 2060 3.563808 TCTTTCTTGTACATGTGTGCACC 59.436 43.478 15.69 6.37 40.26 5.01
1742 2124 1.358787 ACAGCCCTTCCATGGATTTCA 59.641 47.619 17.06 0.00 0.00 2.69
1744 2126 1.642762 AGACAGCCCTTCCATGGATTT 59.357 47.619 17.06 0.00 0.00 2.17
1773 2155 4.003788 AGACCTTGGCGTCCGGTG 62.004 66.667 0.00 0.00 32.91 4.94
1776 2158 2.432628 GACAGACCTTGGCGTCCG 60.433 66.667 0.00 0.00 32.91 4.79
1785 2167 1.898154 GGCCATACACGACAGACCT 59.102 57.895 0.00 0.00 0.00 3.85
1792 2174 3.829044 CCCGTCGGCCATACACGA 61.829 66.667 5.50 0.00 35.49 4.35
1820 2202 1.679898 GTGCAAGACAGTAGGCCCT 59.320 57.895 0.00 0.00 0.00 5.19
1821 2203 1.377333 GGTGCAAGACAGTAGGCCC 60.377 63.158 0.00 0.00 0.00 5.80
1839 2221 0.537188 AGTATCCCACTCAAGGCACG 59.463 55.000 0.00 0.00 28.33 5.34
1849 2231 5.063564 GTCATTTCGTCAAAGAGTATCCCAC 59.936 44.000 0.00 0.00 33.66 4.61
1856 2238 2.221055 GCACGTCATTTCGTCAAAGAGT 59.779 45.455 0.00 0.00 42.27 3.24
1857 2239 2.411547 GGCACGTCATTTCGTCAAAGAG 60.412 50.000 0.00 0.00 42.27 2.85
1887 2270 0.886563 GCATGGCTAAGCATGGATCC 59.113 55.000 4.20 4.20 0.00 3.36
1892 2275 2.333938 GGCGCATGGCTAAGCATG 59.666 61.111 10.83 0.00 42.94 4.06
1917 2300 5.938125 ACACTCCATTTAGCAACGACTTTAT 59.062 36.000 0.00 0.00 0.00 1.40
1923 2306 6.607689 CAAAATACACTCCATTTAGCAACGA 58.392 36.000 0.00 0.00 0.00 3.85
1929 2312 5.030295 CGCAGCAAAATACACTCCATTTAG 58.970 41.667 0.00 0.00 0.00 1.85
1950 2339 1.643810 CAAGCAACTGAATTAACGCGC 59.356 47.619 5.73 0.00 0.00 6.86
1971 2360 2.282462 GGTCCAGGGGCAAGTGTG 60.282 66.667 0.00 0.00 0.00 3.82
1972 2361 3.580319 GGGTCCAGGGGCAAGTGT 61.580 66.667 0.00 0.00 0.00 3.55
1973 2362 3.260100 AGGGTCCAGGGGCAAGTG 61.260 66.667 0.00 0.00 0.00 3.16
1974 2363 3.260100 CAGGGTCCAGGGGCAAGT 61.260 66.667 0.00 0.00 0.00 3.16
1975 2364 4.052518 CCAGGGTCCAGGGGCAAG 62.053 72.222 0.00 0.00 0.00 4.01
1976 2365 2.798760 ATACCAGGGTCCAGGGGCAA 62.799 60.000 0.00 0.00 0.00 4.52
1977 2366 2.798760 AATACCAGGGTCCAGGGGCA 62.799 60.000 0.00 0.00 0.00 5.36
1978 2367 1.580994 AAATACCAGGGTCCAGGGGC 61.581 60.000 0.00 0.00 0.00 5.80
1979 2368 0.258774 CAAATACCAGGGTCCAGGGG 59.741 60.000 0.00 0.00 0.00 4.79
1980 2369 0.999712 ACAAATACCAGGGTCCAGGG 59.000 55.000 0.00 0.88 0.00 4.45
1981 2370 1.340991 CCACAAATACCAGGGTCCAGG 60.341 57.143 0.00 0.00 0.00 4.45
1984 2373 1.029947 CGCCACAAATACCAGGGTCC 61.030 60.000 0.00 0.00 0.00 4.46
1985 2374 1.029947 CCGCCACAAATACCAGGGTC 61.030 60.000 0.00 0.00 0.00 4.46
1986 2375 1.001393 CCGCCACAAATACCAGGGT 60.001 57.895 0.00 0.00 0.00 4.34
2016 2472 1.756561 GCGCTTCTCCTCCTCTCCT 60.757 63.158 0.00 0.00 0.00 3.69
2017 2473 2.811799 GCGCTTCTCCTCCTCTCC 59.188 66.667 0.00 0.00 0.00 3.71
2018 2474 2.411290 CGCGCTTCTCCTCCTCTC 59.589 66.667 5.56 0.00 0.00 3.20
2019 2475 3.144193 CCGCGCTTCTCCTCCTCT 61.144 66.667 5.56 0.00 0.00 3.69
2020 2476 4.882396 GCCGCGCTTCTCCTCCTC 62.882 72.222 5.56 0.00 0.00 3.71
2044 2504 2.418083 GCCTTTGCTTAGCCCGCAT 61.418 57.895 0.29 0.00 37.22 4.73
2047 2507 1.322538 AATGGCCTTTGCTTAGCCCG 61.323 55.000 3.32 0.00 46.55 6.13
2073 2533 1.474879 CTCTCCTTGTCGTCTTCCTCC 59.525 57.143 0.00 0.00 0.00 4.30
2300 2771 4.587189 CGGGAATCGTCCTCGGCC 62.587 72.222 0.00 0.00 44.28 6.13
2326 2819 3.120889 CGTGTGCATGGCGAGATAATAAG 60.121 47.826 0.00 0.00 0.00 1.73
2404 2899 2.967615 GCGCCTGCTTATCCGGAC 60.968 66.667 6.12 0.00 38.39 4.79
2417 2912 0.723981 CTTCTTTCTGCTACTGCGCC 59.276 55.000 4.18 0.00 43.34 6.53
2427 2922 2.767505 ACAAGTACGGCCTTCTTTCTG 58.232 47.619 0.00 0.00 0.00 3.02
2444 2944 0.032952 CCCGACGAGGTCTCAAACAA 59.967 55.000 0.00 0.00 38.74 2.83
2446 2946 1.664306 ACCCGACGAGGTCTCAAAC 59.336 57.895 0.00 0.00 33.81 2.93
2467 2967 7.835682 AGTCTCAGATAGCATAGCATTAGATCT 59.164 37.037 0.00 0.00 0.00 2.75
2468 2968 7.999679 AGTCTCAGATAGCATAGCATTAGATC 58.000 38.462 0.00 0.00 0.00 2.75
2472 2972 6.944862 TCAGAGTCTCAGATAGCATAGCATTA 59.055 38.462 1.94 0.00 0.00 1.90
2478 2978 7.309770 TCTACTCAGAGTCTCAGATAGCATA 57.690 40.000 6.27 0.00 0.00 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.