>input_sequence_77925
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----------------------------------------------------------ATGGGCGCGTGCAACTCGTGCG
AGGCGACGGCCGTGGCGGCGGTCACGGGGGCCTCCGCGGTGGGCGAGGCCACGGCGGCAAGGGTCGTGCTCGCGGACGGC
CAGCTGCAGCGGTTCCCCGGGGGCACCCGGGCGTCGCAGGCCATGAAGGCCGCGGCGGCGGC---------------GGC
TCCCGCGGGCGCGTGCTTCCTGTGCAGCGCCGACGGGCTCGAGCTCGGCGGCGCGGTGGCCGCGGTGGCGGGCGACGAGG
AGCTGCAGCCCGGGCAGCTCTACTTCGTGCTGCCCGGCGCGATGCGGCGGCGGGCCCTGCAGGCGGAGGAGATGGCCGCG
CTCGCGATCCGCGCCAGCGCCGCGCTGGCCGGCGACCACGACGGCCCGCTCGTGTTCCCCGACTCGGCCAGCGGCGCCCC
CGCGGCGAGGAGCGGCGTGAAGGGTGGGTCCCGCCGGCGGTCGCGGAGGGCCCCCAGCCTGGGGCGCGACTTCGTGCCGG
ATCTAGGCGCCATTGCAGAGTAG---------------------------------------------------------
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>chr5D_1_TraesCS5D01G389400
TGGACTTTTAGGAAAAAAAACGTAACAATATTTTAAAACGAGATATATCTAAAACCCGAGGAAA-TACTGTCTATCTTTT
GAATATGCGACGTTTCTTAGCTATTCCTGCATTGGCGCCTCATGATAGGCGTGATGTTGGTACTTTGCGCAGGAGATCCA
GGAAATCCCTATCCAACATGGCGGAGAAAATGGCGCGAAGTTGCCAACGTTG--------TCCGCCGATTCTGTGATCCT
GCATGCAAGCGGCCCCTCCCCCACTGCAACCCTCAATCATCATCTCCTTTTCCCCGTTCCGTTCTTCTTCCTCGCCGTTT
CCTCGGCTTCCAAAAGCTCTAATCTAATAA---------TCCTAGATCAAAAAACTAAACACCTTGTGTTTGGCCAATGA
TGCCCAGCACACATGATCGAATGATTTCGCCGGCAAAAATGAAGCATCCCAGGACATCATGTAGTAGTAGCGCTTCAGCT
CATGCT----------CATGCAGTGA--------TCCCACTCACTCGCTGAAGCCTTCAGCTCGTGGG----AGCAGCAC
TCTGCTCCTGTGCGCGCGCGCCCTCTGTTTCC----CACGCACACAGTCAGCCACACAGGGAGAAACGATTTCGCCGTGG
GGAAGGACGCATGGACACGTCAGAAGCCACTGAACCGTGGGCCGCCGCACTGGCAATGTGCCATGCATGCAGCACAGCTC
CGCACAACGCGACGCTAGTAGTACGTTCCATAG-----------------------------------------------
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-------------------------------------------------------------------------CTTAGGT
GGTGTACTCTACCGGACGGGACGTCCCCAGCTACACGTCCGCACAGTGCACGCATTTACGCGCGCGCCCCGCATGCAAGC
TGTCCCCAACAACCTCCAGGTTGGCATCCTCCT-CCTCCCCCGCGACACCACCCGACGACGCGAGCCGAGGCGTCGCCCC
CCTATATATACGCTCACGGCTCACTCCTCCCCACA-----CAACCACCGCCGTGCGCGCGCAGCTCGAGCTCCTCTCCTC
-----ACCTCGGATTAATAAGCTTCGGCGGCGATTTT---TACTATAATATCTTCACCATGGGCGCGTGCAACTCGTGCG
AGGCGACGGCCGTGGCGGCGGTCACGGGGGCCTCCGCGGTGGGCGAGGCCACGGCGGCAAGGGTCGTGCTCGCGGACGGC
CAGCTGCAGCGGTTCCCCGGGGGCACCCGGGCGTCGCAGGCCATGAAGGCCGCGGCGGCGGC---------------GGC
TCCCGCGGGCGCGTGCTTCCTGTGCAGCGCCGACGGGCTCGAGCTCGGCGGCGCGGTGGCCGCGGTGGCGGGCGACGAGG
AGCTGCAGCCCGGGCAGCTCTACTTCGTGCTGCCCGGCGCGATGCGGCGGCGGGCCCTGCAGGCGGAGGAGATGGCCGCG
CTCGCGATCCGCGCCAGCGCCGCGCTGGCCGGCGACCACGACGGCCCGCTCGTGTTCCCCGACTCGGCCAGCGGCGCCCC
CGCGGCGAGGAGCGGCGTGAAGGGTGGGTCCCGCCGGCGGTCGCGGAGGGCCCCCAGCCTGGGGCGCGACTTCGTGCCGG
ATCTAGGCGCCATTGCAGAGTAGTAGCCGCTGCCCTGGCCAGCTCG---------CCGTCCGGCG------------GGC
AAGAAGAAATAACCCGAGTGTAGAGTTACGTGTAAACTAATCCACCGGAGGGAGATTTGGTTTGACTAATGCTAATCTAG
TGTAGTT-GGGGGGAGGCTAAACAATCTCTGCTTAGCTGTAGCTACGGCTGCACGTTCTGGTGCACACA------TGTAC
AAGAAAGACGCGTAGGCACATTGCATTGCGTATTATTTTGATCTGAAATCCATGGAAGGGCTGTCTGAAATCTGCACCGG
ACGCCAAGGTCTGTCGTGTATGGCCGACGGGTGGGTCCCACAGGGCCTACTGTCTTGCACCGTGCCTTGAGTGGGATACT
C-TTTGACGAAATGACGTGCCGAATGGCCGGATCCATGCTTAGCCATGCGCCCATCGTAATAAAGTCGTTGCTAAATGGA
GTGTATTTTG------CTGCGCGTTAATTCAGTTGCTTGCACACTTGCCCCTGGA-------------------------
------------------------------------------CCCTGGTATTTGTGGCGGTAGCTTGGGAGAGGAGAGGA
GGAGAAGCGCGGCGAGGG----AATGCGGGCTAAGCAAAGGCCATTTCGGTAGGAGGAAGACGACAAGGAGAGACCTTTT
-TCAGCTTTTCGGTCTAATCCTCTCGTGCGCGACATGGCCGGCTCCCGTCGCTCGCCTACAGCGCGCAGCACTGCTGCCG
CCCGCGAG-GCGCGAGCCACTGGGC-----GTGGATGGTGGCCGGGGCGGACCGGTCGCCGTCTCGTGACCGTGCGCTCG
CCGGCGCAACTTGGCAAAGCAAGATATTCCAC----GAGCTGACAGCGGCGGCCGAGGAC-------------GA-----
----TTCCCGGGGCCGGGCTTATTATCTCGCCATGCACACGGTGACTGATCGATGTGCCCGGCGAACAAATCAAATTCG-
-TTCCGGCCCGTCCCGGGGTCCGGATAAGCAGGCGCAGTAGC-----AGAAAGAAGGCCGTACTTGTTTGAGACCTCGTC
GGGTCCAGATCTAATGCTATGCTATCTGAGACTCTGAGTAGAGACGGAA
>chr5A_1
TGGACTTTTCAAAG-AAAAACATAATAATATTTTAAAACGAGATATATCTAAAACCCCAGGTTACTACTGTCTATCTTTT
GAATATGTGACGTTTCTTAACAAGTCCTGCATTGGCGCCTCATGATAGGCGCGATGTTGGTACTTTGCGCAGGAGATCCA
GGAAATCCATATCCAACATGGCGGAGAAAATGGCGCGAAGTTGCCAACTTTGGCGGATCCTCCGCCGATTCTGTGATCCT
GCATGCAAGCGGCCCCTCCCCCACTGCAATCATCAACCATCATCTCCTTTTCCCCGTTCCGTTCTTCTTCCTCGCCGTTT
CCTCGGCTTCCAAAAGCTCCTATCTAAAATACC-------CCTAGATCAAAAAACTAAGCGCCTTTGCTTTGCCCAATGA
TGCGCAGCACACACGATCAAATGATCTCGCCGGCGAAAAAGAAGCATCACACGACACAATGTAGTAGTAGCGCTTCACTT
CGTGCTTGGGACTTGACATGCAGTGA--------TCCCACTCACTCGC------CTTCAGCTCGTGAGATAAAGCAGCGC
TCTGCTCCTGTGCACGCCCGTCCTCTGTTTCTCCCGCACGCACACAGTTACTACACAATGTGTTAC--------------
---------------CACGTCAGCAGCCACTGAACCGTGGGCCGCCGCAGTGCCAACGTGCCATGCATGCGGCACAGCTC
CGCACAACGCGACGCTG-------GTACAAGTAGGTTATATAGACTAGCCACAATGAAAAGTAACATATACTAGTAACAT
ACATATTTTTCTAGACTATGTTATTATCTTTATAGAGGGTAATAACTTAAGTGTGGAAACATGTAAAGATTCATTTATTA
TGTTATAGACTTATATTGCATTAGGACATGTGATGTTACAGTAACTAGCTAAATTACTACAACTAGCTCTCTCCTTATTA
ATTCGTTGTCACATAAGCAAATTTTCTGGGTTGGACCCAATGTTACTAGTGAAGTTACTCGCACTTGGCTAGTCTGAGGT
GGTGTACTCTACCAGACGGGACGTCCCTAGGTACACGTCTGCACAGTGCGCGCATTTACGCGCGCGCCCCGCATGCAAGC
TGTCCCCAACAACCTCCAGGTTGGCATCCTCCT-CCTCCGCCGCGACACCGCCCGGCGGGT----------CGTCG-CCC
CCTATATATACGCTCACGGCTCACTCCTCCCCACAAGACACAACCACCGCCGTGCGCGCGCAGCTCGAGCTCTGCTCCTC
CCTTCACCTCGGATTAATAAACTTCGGCGCCGATTTT---TACTATAATATTTT-ACCATGGGCGCGTGCAACTCGTGCG
AGGCGACGGCCGTGGCGGCGGTCACGGGGGCCTCCGCGGTGGGCGAGGCCACGGCGGCAAGGGTCGTGCTCGCGGACGGC
CAGCTGCAGCGGTTCCCCGGGGGCACCCGGGCGTCGCAGGCCATGAAGGCCGCGG------C---------------GGC
TCCCGCGGGCGCGTGCTTCCTGTGCAGCGCCGACGGGCTCGAGCTCGGCGGCGCGGTGGCCGCGGTGGTGGGCGACGAGG
AGCTGCAGCCCGGGCAGCTCTACTTCGTGCTGCCCGCGGCGATGCGGCGGCGGGCGCTGCAGGCGGAGGAGATGGCCGCG
CTCGCGATCCGCGCCAGCGCCGCGCTGGCCGGCGACCACGACGGCCCGCTCGTGTTCCCCGACTCGGCCAGTGGCGCCCC
CGCGGCGAGGAGCGGCGCGAAGGGCGGGTCCCGCCGGCGGTCGCGGAGGGCGCCCAGCCTCGGGCGCGACTTCGTGCCGG
ATCTCGGCGCCATTGCCGAGTAG---CCGCTGGCCTGGCCGGCGAGATGGATCGACCGAACCGGACGCGCGGCGGGCGGC
GAGGA-AAATAACCCGAGTGTAGAGTTACGTGTAAACTAATCCAGTGGAGGGAGATTTGGTTTGACTAATGCTAATCTAG
TGTAGTTGGGGGGGAGGCTAAACAAGCTCTGCTTAGCTGTAGCTACTGCCGCACGTTCCAGTGTAGTGCGCATGTTGTAC
AAGAAAGACGCGTAGGCACATTGCATTGCGTATTTTTTTGATCCTGATTCCGTCGAAGGGCCGTCTGAAATCTGGACTGG
ACGCCATGGTCTCCCGTGTGTGGCTGACGGGTGGGTCCCACGACGCTTAATGTCCAGCACTGCCGCCAGAATGGGGCGTT
CTTCTGACGAAATGACGTGCCGAACGGCCAGATCGATGCTTAGCCATGCGCCCATCGTATTAAAGCCGTTGGTAAATGGA
GTGTATTTTGGTACGCCTACGCGTTAATCCGGTCGCTTTTTGCGCCTTTTCTTTTAAAAAAAAGCTCGGTTGCTTTCTGC
------------------------------------ATTTGCCCCTGGTATTTGTGGTGGTGCCTTGGGAG-----GGAA
GGAGAAGCGCGGGGAGGT----AGTGTGGGCTAAGCAAAGGCCATTTCGGTACGAGGAAGACGACAAGGGGGGACCTTTT
CTCAGCTTTTCTGTCTAATCCTCTCGCGCGCGACATGGCCGCCTCCCGTCGCTCGCCTACAGCCCGCACCACTGCTGCCT
GCCGCCACTCGT---------------------------------------------------TCGTGGCCGTGCGCTCG
CCGGCGCAACTTGGCAAAGCAAGATATTCCACGGATGAGCTGACGGCGGCAGCCGAGGAC-------------GATGATT
CGTTTTCCCGGGGCCGGCTTTATTATCTCGCCATGCACCCGGCGACTGGTCGATGTGCCCCGCGAACAGAT---------
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>chr5B_14
-------------AAAAAAGCGTGACAATATTTTCAAACGAAGTATATCTAAAACCCGAGGTAT-TACTGTCTATCTTTT
GAATATGTGACGTTTCTTACCTATTCCTGCATTGGCGCCTCATGATAGGCGTGATGTTGGTACTTTTCGCAGGAGATCCA
GGAAATCCCAGTCCAACATGGCGGAGAAAATGGCGCGAAGTTGCCAACTTTGGCGGATCCTCCGCCGATTCTGTGATCCT
GCATGCAAGCGGCCCCTCCCCCACTGCAATCATCAACCATCATCTCCTTTTCCCCGTTCCCTTCTTCTTCCTCGCCGTTT
CCTCGGCTTCCAAAAGCTCCTATCTAATACTCCTACTCCTCCTAGATCAAAAAACTAAGCGCCTC-GCTTTGCCCAATGA
TTCTCAGCACGCATGATCGAATGATTTCGCCGGCAAAAAAGAAGCATCACACGACATAATGTAGTTGTAGCGCTTCAGCT
CGTGCTTGGGACTTGACATGCAGTGATGCAGTGATCCCACTCACTCACTC--GCCTCCAGCTCGTGGG----AGCAGCAC
TCTGCTCCTGTGC----------------------------------------ACACAGGGAGAAACGATTTCGCCGTGG
GGAACGACGCATGGACACGTCAGCGGTCACTGAACCGTGGGCCGCCGCACTGCCAATGTGCCATGCATGCAGCACAGCTC
CGCACAACGCGACGCT---AGTACGTTCCAGTAGGCTATA----------------------------------------
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------------------GGACGTCCCTAGCTACACGTCCGCACAGTGCACGCATTTACGCGCGCGCCCCGCATGCAAGC
TGTCCCCAACAACCTCCAGGTTGGCATCCTCCTTCCTCCTCCGCGACACCGCCCGGCGGGT----------CGTCGCCCC
CCTATATATACGCTCACGGCTCACTCCTCCCCACT-----CAGCCACCACCGTGCGCGCGCAGCTCGAGCTCTGCTCCTC
TCTTCACCTCGGATTAATAACCCTCGGCGGCGATTTTTACTACTATAATATCTTCACCATGGGCGCGTGCAACTCGTGCG
AGGCGACGGCCGTGGCGGCGGTGACGGGGGCCTCCGCGGTGGGCGAGGCCACGGCGGCGCGGGTCGTGCTCGCGGACGGC
CAGCTGCAGCGGTTCCCCGGGGGCACCCGGGCGTCGCAGGCCATGAAGGCCGCGG------CTGCGGCGGCGACGGCGGC
GCCCGCGGGCGCGTGCTTCCTGTGCAGCGCCGACGGGCTCGAGCTCGGCGGCGCGGTGGCCGCGGTGGCGGCCGACGAGG
AGCTGCAGCCCGGGCAGCTCTACTTCGTGCTGCCCGCGGCGATGCGGCGCCGGCCGCTGCAGGCGGAGGAGATGGCCGCG
CTCGCGATCCGCGCCAGCGCCGCGCTGGCCTGCGACCACGACGGCCCGCTCGTGTTCCCCGACTCGGCCAGCGGCGCCCC
CGCGGCGAGGAGCGGCGTGAAGGGTGCGTCCCGCCGGCGGTCGCGGAGGGCCCCCAGCCTCGGGCGCGACTTCGTGCCTG
ATCTCGGCGCCATTGCCGAGTAG---CCGCCGGCCTGGCCTGCTCG---------CCGTCCGGCAAGAGCGGCGGGCGGC
AAGAACGAATAACCCGAGTGTAGAGTTACGTGTAAACAAATCCACCGGAGGGAGATTTGGTTTGACTAATGCTAATCTAG
TGTAGTT-GGGGGAAGGCTGAACGAACTCTGCTTAGCTGTAGCTACTGCTGCACGTTCTAGTGCACACA------TGTAC
AAGGAAGACGCGTAGGCACATTGCCCTGCGTATTATTTTGATCCG--ATCCATGGAAGGGCTGTCTGAAATCTGGACTGG
AAGCCGTTGTCCCCCGTGTATAGCTGACGGGTGGGTCCCACGAGGCCTACCGTCCTGC-----------AATGAGATGTT
GTTTTGACGAAATGACGTGCCGAGTGACCAGATCGATGCTTAGCCATGCGCCCCTGGTATTAAT----------------
-----------------------------------------------------------------TCGGTTGCTTTTTGC
ACTTTATAAAAAAAAAGAGTAAGTTGCTTCTGCTAGATTTGCCCCTGGTATTTGTGGCGGTAGCTTGGGGG-----AGGA
GGAGAAGCGCGGCGAGGGATGGAGCGTGGGCTAAGCAAGGGCCATTTCGGTACGGGGAAGACGACAAGGAGAGACCTTTT
-TCAGCTTTTTGGTCTAATCCTCTCGTGCGCGACATGGCCGGCTCCCGTCGCTCGCGTACAGCGCGCCGCACTGCTGCCG
CCCGCCCGCGCGCGAGCCACTGGGGTGGGGGTGGATGGTGGCCGGGGCGGATCGGTCGACGTCTCGTGACCGTGCGCTCG
CCGGCGCAACTTGGCAAAGCCAGATATTCCACGGATGAGCTGACAGCGGCAGCCGAGGGCGAAGCCGCCGATTGATAATT
CGTTTTTCCGGGGCCGGGTTTATCATCTCGCCATGCACACGGTGACTGATCGATGTGCCCGGCGACATATTCGTTCCGGG
CTTCCGGCCCGTCCCGGG-TCCGGATAAGCAAGCGCAGTAGAATCGTAGAAAGAAGGCCGTACGTCTTTGAGACCTCGTC
GGGTCCGTATCCAATGCCATGCTATCTGAGAC-----------------
>SNPs
---------SSS-------------------------------------------------S------------------
-------S-----------S------------------------------------------------------------
------------------------------------------------S-------------------------------
-----------------------------S-S----S-------------------------------------------
-------------------SS--------S----------------------------S-S----SSS----S-------
---S-----------------------------------S--------S--S-----S----------------------
-S-----------------------------------------------SSS----------------------------
-------------S---S--S----------S----------------S-SSS---------------------------
----S------------------S----------------------------S---------------------------
----------------SSS-----------SSS-----------------------------------------------
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---------------------------------------------------------------------------S----
-------------S-------------S----------------------------------------------------
---------------------------------------S----------S----S--SSSSSSSSSSSSS---------
------------------------------------------------------------------------SS------
--------------------S-----------------------------------------------------------
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-------------------------------------------------------SSSSSS-------------------
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------------------------------------SS-----------------S------------------------
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------------------------------------------------------------S-------------------
----S-----------S------SSS------S-------S-----------------------S---------------
-----S--------------------------------------------------------------------------
-------------------------S--------------------S------------S--------------------
-------------------------------------------S-S----------------------------S--S--
------S-----SS----------S----------------SS-----------S-----S-SSS-SS--S------SS-
-----------------------------S----S------------------------S-----S-----S--------
------------------S---------S-S--S----SSSSSSSSSSSS--SSS-------------------------
-----------------------------------------------------------------------SSSSS----
-----------------------S--S-------------------------S---------------------------
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-----S------------------S--------------------------S------S---------------------
--------------------------------------------------S-----------------------------
------------------S-----------------------------------------------------SSSSSS--
------------------S------------S---------S---------------------S-S--------------
------SS---S-----S--------------SSSSSSSSSSSSSSSSS
>forward_530
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------------------------------GTGATCCCACTCACTCGCTG------------------------------
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>reverse_2944
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---------------------------------------------------------------TTGTTTGAGACCTCGTC
GGG----------------------------------------------
