Multiple sequence alignment - TraesCS5D01G382800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G382800 chr5D 100.000 2324 0 0 1 2324 452492782 452495105 0.000000e+00 4292.0
1 TraesCS5D01G382800 chr5D 92.258 155 12 0 96 250 505899803 505899957 1.080000e-53 220.0
2 TraesCS5D01G382800 chr5D 89.032 155 17 0 96 250 482643219 482643065 2.360000e-45 193.0
3 TraesCS5D01G382800 chr5D 77.778 198 33 8 1036 1232 344446892 344446705 6.790000e-21 111.0
4 TraesCS5D01G382800 chr5D 75.845 207 37 8 1033 1234 344468565 344468763 2.460000e-15 93.5
5 TraesCS5D01G382800 chr5D 81.132 106 17 3 6 109 41610542 41610646 5.320000e-12 82.4
6 TraesCS5D01G382800 chr5B 89.425 1201 53 30 289 1441 552834886 552836060 0.000000e+00 1447.0
7 TraesCS5D01G382800 chr5B 89.406 623 57 3 1701 2322 552838083 552838697 0.000000e+00 776.0
8 TraesCS5D01G382800 chr5B 94.194 155 9 0 96 250 536231406 536231560 1.070000e-58 237.0
9 TraesCS5D01G382800 chr5B 83.577 274 24 14 1431 1700 552837667 552837923 1.070000e-58 237.0
10 TraesCS5D01G382800 chr5B 89.130 92 8 2 6 95 63546226 63546135 1.890000e-21 113.0
11 TraesCS5D01G382800 chr5B 77.895 190 33 6 1033 1222 407622412 407622592 2.440000e-20 110.0
12 TraesCS5D01G382800 chr5B 78.523 149 26 4 1036 1184 407615199 407615057 2.460000e-15 93.5
13 TraesCS5D01G382800 chr5B 82.243 107 14 5 6 109 580757917 580757813 1.140000e-13 87.9
14 TraesCS5D01G382800 chr5A 85.238 1050 79 31 588 1578 571424858 571425890 0.000000e+00 1011.0
15 TraesCS5D01G382800 chr5A 86.164 159 22 0 92 250 77984960 77985118 3.070000e-39 172.0
16 TraesCS5D01G382800 chr5A 84.071 113 15 3 1585 1695 283159512 283159401 3.160000e-19 106.0
17 TraesCS5D01G382800 chr5A 79.221 154 26 4 1036 1189 447551978 447551831 4.090000e-18 102.0
18 TraesCS5D01G382800 chr5A 77.528 178 29 8 1056 1232 447631175 447631342 1.900000e-16 97.1
19 TraesCS5D01G382800 chr6D 89.032 155 17 0 96 250 57165131 57164977 2.360000e-45 193.0
20 TraesCS5D01G382800 chr2A 88.462 156 16 2 96 250 138182422 138182268 1.100000e-43 187.0
21 TraesCS5D01G382800 chr6A 87.821 156 18 1 95 250 413297634 413297480 5.100000e-42 182.0
22 TraesCS5D01G382800 chr3D 87.742 155 19 0 96 250 611539923 611540077 5.100000e-42 182.0
23 TraesCS5D01G382800 chr3D 87.342 158 19 1 93 250 66603384 66603540 1.830000e-41 180.0
24 TraesCS5D01G382800 chr3D 84.483 116 15 3 1582 1695 536894824 536894938 6.790000e-21 111.0
25 TraesCS5D01G382800 chr3D 83.478 115 12 7 1585 1695 396084461 396084572 1.470000e-17 100.0
26 TraesCS5D01G382800 chr3D 83.333 90 15 0 6 95 275908917 275909006 1.480000e-12 84.2
27 TraesCS5D01G382800 chr1A 88.043 92 9 2 6 95 23335738 23335829 8.780000e-20 108.0
28 TraesCS5D01G382800 chr4B 84.071 113 15 3 1585 1695 350130160 350130049 3.160000e-19 106.0
29 TraesCS5D01G382800 chr3B 84.071 113 15 3 1585 1695 175896461 175896350 3.160000e-19 106.0
30 TraesCS5D01G382800 chr3B 83.333 114 15 4 1589 1700 351688492 351688603 4.090000e-18 102.0
31 TraesCS5D01G382800 chr2D 85.047 107 13 3 1591 1695 27264982 27265087 3.160000e-19 106.0
32 TraesCS5D01G382800 chr2D 86.667 90 10 2 6 93 62035615 62035704 5.280000e-17 99.0
33 TraesCS5D01G382800 chr2D 84.706 85 11 2 9 91 567002224 567002140 1.480000e-12 84.2
34 TraesCS5D01G382800 chr4D 83.186 113 16 3 1585 1695 76850504 76850615 1.470000e-17 100.0
35 TraesCS5D01G382800 chr6B 81.132 106 16 3 6 109 365359422 365359525 5.320000e-12 82.4
36 TraesCS5D01G382800 chr6B 81.000 100 13 5 12 109 121796323 121796228 8.910000e-10 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G382800 chr5D 452492782 452495105 2323 False 4292 4292 100.000000 1 2324 1 chr5D.!!$F3 2323
1 TraesCS5D01G382800 chr5B 552834886 552838697 3811 False 820 1447 87.469333 289 2322 3 chr5B.!!$F3 2033
2 TraesCS5D01G382800 chr5A 571424858 571425890 1032 False 1011 1011 85.238000 588 1578 1 chr5A.!!$F3 990

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
261 262 0.034059 CACCGCTATTAGGCAGAGGG 59.966 60.0 0.0 0.0 37.3 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1583 3298 0.105039 GCGGAGGGAGTACTTCATGG 59.895 60.0 2.92 0.0 0.0 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 8.298729 TCCTAACCTAAACTACTAACCTTAGC 57.701 38.462 0.00 0.00 34.09 3.09
43 44 7.067494 TCCTAACCTAAACTACTAACCTTAGCG 59.933 40.741 0.00 0.00 34.09 4.26
44 45 5.588958 ACCTAAACTACTAACCTTAGCGG 57.411 43.478 0.00 0.00 34.09 5.52
45 46 5.264395 ACCTAAACTACTAACCTTAGCGGA 58.736 41.667 0.00 0.00 34.09 5.54
46 47 5.359292 ACCTAAACTACTAACCTTAGCGGAG 59.641 44.000 0.00 0.00 34.09 4.63
47 48 5.591877 CCTAAACTACTAACCTTAGCGGAGA 59.408 44.000 0.00 0.00 34.09 3.71
48 49 4.979943 AACTACTAACCTTAGCGGAGAC 57.020 45.455 0.00 0.00 34.09 3.36
49 50 3.960571 ACTACTAACCTTAGCGGAGACA 58.039 45.455 0.00 0.00 34.09 3.41
50 51 4.534797 ACTACTAACCTTAGCGGAGACAT 58.465 43.478 0.00 0.00 34.09 3.06
51 52 4.579753 ACTACTAACCTTAGCGGAGACATC 59.420 45.833 0.00 0.00 34.09 3.06
52 53 2.358267 ACTAACCTTAGCGGAGACATCG 59.642 50.000 0.00 0.00 34.09 3.84
53 54 0.460311 AACCTTAGCGGAGACATCGG 59.540 55.000 0.00 0.00 36.31 4.18
54 55 1.364171 CCTTAGCGGAGACATCGGG 59.636 63.158 0.00 0.00 33.16 5.14
55 56 1.107538 CCTTAGCGGAGACATCGGGA 61.108 60.000 0.00 0.00 33.16 5.14
56 57 0.962489 CTTAGCGGAGACATCGGGAT 59.038 55.000 0.00 0.00 0.00 3.85
57 58 1.341531 CTTAGCGGAGACATCGGGATT 59.658 52.381 0.00 0.00 0.00 3.01
58 59 0.959553 TAGCGGAGACATCGGGATTC 59.040 55.000 0.00 0.00 0.00 2.52
59 60 1.301009 GCGGAGACATCGGGATTCC 60.301 63.158 0.00 0.00 0.00 3.01
60 61 1.367840 CGGAGACATCGGGATTCCC 59.632 63.158 12.14 12.14 41.09 3.97
71 72 3.878667 GATTCCCCTCCCGCCCTG 61.879 72.222 0.00 0.00 0.00 4.45
105 106 4.479993 GCAGAGGCAGTGGCGGAT 62.480 66.667 11.51 0.00 42.47 4.18
106 107 2.202987 CAGAGGCAGTGGCGGATC 60.203 66.667 11.51 3.60 42.47 3.36
107 108 3.474570 AGAGGCAGTGGCGGATCC 61.475 66.667 11.51 0.00 42.47 3.36
108 109 3.785859 GAGGCAGTGGCGGATCCA 61.786 66.667 13.41 0.00 44.18 3.41
158 159 3.660621 GTGGCTGGCAGTCACTTC 58.339 61.111 37.61 17.69 46.70 3.01
159 160 2.031012 TGGCTGGCAGTCACTTCG 59.969 61.111 19.55 0.00 0.00 3.79
160 161 2.031163 GGCTGGCAGTCACTTCGT 59.969 61.111 15.50 0.00 0.00 3.85
161 162 1.598130 GGCTGGCAGTCACTTCGTT 60.598 57.895 15.50 0.00 0.00 3.85
162 163 1.571460 GCTGGCAGTCACTTCGTTG 59.429 57.895 17.16 0.00 0.00 4.10
163 164 1.845809 GCTGGCAGTCACTTCGTTGG 61.846 60.000 17.16 0.00 0.00 3.77
164 165 1.845809 CTGGCAGTCACTTCGTTGGC 61.846 60.000 6.28 0.00 36.72 4.52
165 166 1.598130 GGCAGTCACTTCGTTGGCT 60.598 57.895 0.00 0.00 33.77 4.75
166 167 0.320421 GGCAGTCACTTCGTTGGCTA 60.320 55.000 0.00 0.00 33.77 3.93
167 168 1.676014 GGCAGTCACTTCGTTGGCTAT 60.676 52.381 0.00 0.00 33.77 2.97
168 169 2.418197 GGCAGTCACTTCGTTGGCTATA 60.418 50.000 0.00 0.00 33.77 1.31
169 170 2.860735 GCAGTCACTTCGTTGGCTATAG 59.139 50.000 0.00 0.00 27.57 1.31
170 171 3.448686 CAGTCACTTCGTTGGCTATAGG 58.551 50.000 1.04 0.00 27.57 2.57
171 172 3.097614 AGTCACTTCGTTGGCTATAGGT 58.902 45.455 1.04 0.00 26.38 3.08
172 173 4.097437 CAGTCACTTCGTTGGCTATAGGTA 59.903 45.833 1.04 0.00 27.57 3.08
173 174 4.894114 AGTCACTTCGTTGGCTATAGGTAT 59.106 41.667 1.04 0.00 26.38 2.73
174 175 6.016527 CAGTCACTTCGTTGGCTATAGGTATA 60.017 42.308 1.04 0.00 27.57 1.47
175 176 6.207025 AGTCACTTCGTTGGCTATAGGTATAG 59.793 42.308 1.04 0.29 38.89 1.31
189 190 4.657436 AGGTATAGCTACAGTGTTCTGC 57.343 45.455 0.00 4.25 44.77 4.26
190 191 4.023980 AGGTATAGCTACAGTGTTCTGCA 58.976 43.478 0.00 0.00 44.77 4.41
191 192 4.651503 AGGTATAGCTACAGTGTTCTGCAT 59.348 41.667 0.00 4.04 44.77 3.96
192 193 5.129485 AGGTATAGCTACAGTGTTCTGCATT 59.871 40.000 0.00 0.00 44.77 3.56
193 194 5.235186 GGTATAGCTACAGTGTTCTGCATTG 59.765 44.000 0.00 0.00 44.77 2.82
195 196 3.480470 AGCTACAGTGTTCTGCATTGTT 58.520 40.909 0.00 0.00 44.14 2.83
196 197 3.885297 AGCTACAGTGTTCTGCATTGTTT 59.115 39.130 0.00 0.00 44.14 2.83
197 198 3.976942 GCTACAGTGTTCTGCATTGTTTG 59.023 43.478 0.00 0.00 44.14 2.93
198 199 3.441496 ACAGTGTTCTGCATTGTTTGG 57.559 42.857 0.00 0.00 44.14 3.28
199 200 2.760092 ACAGTGTTCTGCATTGTTTGGT 59.240 40.909 0.00 0.00 44.14 3.67
200 201 3.951037 ACAGTGTTCTGCATTGTTTGGTA 59.049 39.130 0.00 0.00 44.14 3.25
201 202 4.202010 ACAGTGTTCTGCATTGTTTGGTAC 60.202 41.667 0.00 0.00 44.14 3.34
202 203 4.036734 CAGTGTTCTGCATTGTTTGGTACT 59.963 41.667 0.00 0.00 34.79 2.73
203 204 4.036734 AGTGTTCTGCATTGTTTGGTACTG 59.963 41.667 0.00 0.00 0.00 2.74
204 205 3.951037 TGTTCTGCATTGTTTGGTACTGT 59.049 39.130 0.00 0.00 0.00 3.55
205 206 5.008217 GTGTTCTGCATTGTTTGGTACTGTA 59.992 40.000 0.00 0.00 0.00 2.74
206 207 5.008217 TGTTCTGCATTGTTTGGTACTGTAC 59.992 40.000 9.46 9.46 0.00 2.90
207 208 4.709250 TCTGCATTGTTTGGTACTGTACA 58.291 39.130 18.79 0.00 0.00 2.90
208 209 5.312895 TCTGCATTGTTTGGTACTGTACAT 58.687 37.500 18.79 0.85 0.00 2.29
209 210 6.468543 TCTGCATTGTTTGGTACTGTACATA 58.531 36.000 18.79 5.32 0.00 2.29
210 211 6.370442 TCTGCATTGTTTGGTACTGTACATAC 59.630 38.462 18.79 12.93 0.00 2.39
211 212 5.120986 TGCATTGTTTGGTACTGTACATACG 59.879 40.000 18.79 3.80 0.00 3.06
212 213 5.121142 GCATTGTTTGGTACTGTACATACGT 59.879 40.000 18.79 0.00 0.00 3.57
213 214 6.347888 GCATTGTTTGGTACTGTACATACGTT 60.348 38.462 18.79 3.64 0.00 3.99
214 215 6.528014 TTGTTTGGTACTGTACATACGTTG 57.472 37.500 18.79 0.00 0.00 4.10
215 216 5.599732 TGTTTGGTACTGTACATACGTTGT 58.400 37.500 18.79 0.41 42.62 3.32
216 217 6.047870 TGTTTGGTACTGTACATACGTTGTT 58.952 36.000 18.79 0.00 39.87 2.83
217 218 6.538021 TGTTTGGTACTGTACATACGTTGTTT 59.462 34.615 18.79 0.00 39.87 2.83
218 219 6.528014 TTGGTACTGTACATACGTTGTTTG 57.472 37.500 18.79 0.00 39.87 2.93
219 220 4.448395 TGGTACTGTACATACGTTGTTTGC 59.552 41.667 18.79 0.00 39.87 3.68
220 221 4.143052 GGTACTGTACATACGTTGTTTGCC 60.143 45.833 18.79 0.00 39.87 4.52
221 222 3.735591 ACTGTACATACGTTGTTTGCCT 58.264 40.909 0.00 0.00 39.87 4.75
222 223 3.496884 ACTGTACATACGTTGTTTGCCTG 59.503 43.478 0.00 0.00 39.87 4.85
223 224 2.809119 TGTACATACGTTGTTTGCCTGG 59.191 45.455 0.00 0.00 39.87 4.45
224 225 1.243902 ACATACGTTGTTTGCCTGGG 58.756 50.000 0.00 0.00 33.74 4.45
225 226 0.525761 CATACGTTGTTTGCCTGGGG 59.474 55.000 0.00 0.00 0.00 4.96
235 236 2.358984 GCCTGGGGCGTCGTTTTA 60.359 61.111 0.00 0.00 39.62 1.52
236 237 1.967494 GCCTGGGGCGTCGTTTTAA 60.967 57.895 0.00 0.00 39.62 1.52
237 238 1.871077 CCTGGGGCGTCGTTTTAAC 59.129 57.895 0.00 0.00 0.00 2.01
238 239 1.579964 CCTGGGGCGTCGTTTTAACC 61.580 60.000 0.00 0.00 0.00 2.85
239 240 0.604511 CTGGGGCGTCGTTTTAACCT 60.605 55.000 0.00 0.00 0.00 3.50
240 241 0.885596 TGGGGCGTCGTTTTAACCTG 60.886 55.000 0.00 0.00 0.00 4.00
241 242 1.579964 GGGGCGTCGTTTTAACCTGG 61.580 60.000 0.00 0.00 0.00 4.45
242 243 1.208358 GGCGTCGTTTTAACCTGGC 59.792 57.895 0.00 0.00 0.00 4.85
243 244 1.508808 GGCGTCGTTTTAACCTGGCA 61.509 55.000 0.00 0.00 0.00 4.92
244 245 0.385098 GCGTCGTTTTAACCTGGCAC 60.385 55.000 0.00 0.00 0.00 5.01
245 246 0.236449 CGTCGTTTTAACCTGGCACC 59.764 55.000 0.00 0.00 0.00 5.01
246 247 0.236449 GTCGTTTTAACCTGGCACCG 59.764 55.000 0.00 0.00 0.00 4.94
247 248 1.081708 CGTTTTAACCTGGCACCGC 60.082 57.895 0.00 0.00 0.00 5.68
248 249 1.512156 CGTTTTAACCTGGCACCGCT 61.512 55.000 0.00 0.00 0.00 5.52
249 250 1.525941 GTTTTAACCTGGCACCGCTA 58.474 50.000 0.00 0.00 0.00 4.26
250 251 2.089201 GTTTTAACCTGGCACCGCTAT 58.911 47.619 0.00 0.00 0.00 2.97
251 252 2.490509 GTTTTAACCTGGCACCGCTATT 59.509 45.455 0.00 0.00 0.00 1.73
252 253 3.630892 TTTAACCTGGCACCGCTATTA 57.369 42.857 0.00 0.00 0.00 0.98
253 254 2.902705 TAACCTGGCACCGCTATTAG 57.097 50.000 0.00 0.00 0.00 1.73
254 255 0.180406 AACCTGGCACCGCTATTAGG 59.820 55.000 0.00 0.00 0.00 2.69
255 256 1.598130 CCTGGCACCGCTATTAGGC 60.598 63.158 0.00 0.00 0.00 3.93
256 257 1.146041 CTGGCACCGCTATTAGGCA 59.854 57.895 0.00 0.00 35.18 4.75
257 258 0.882042 CTGGCACCGCTATTAGGCAG 60.882 60.000 0.00 0.00 45.95 4.85
258 259 1.334384 TGGCACCGCTATTAGGCAGA 61.334 55.000 0.00 0.00 32.48 4.26
259 260 0.601311 GGCACCGCTATTAGGCAGAG 60.601 60.000 0.00 0.00 0.00 3.35
260 261 0.601311 GCACCGCTATTAGGCAGAGG 60.601 60.000 0.00 0.00 38.77 3.69
261 262 0.034059 CACCGCTATTAGGCAGAGGG 59.966 60.000 0.00 0.00 37.30 4.30
262 263 1.122019 ACCGCTATTAGGCAGAGGGG 61.122 60.000 1.67 1.67 46.10 4.79
263 264 0.832135 CCGCTATTAGGCAGAGGGGA 60.832 60.000 0.00 0.00 44.06 4.81
264 265 0.605589 CGCTATTAGGCAGAGGGGAG 59.394 60.000 0.00 0.00 0.00 4.30
265 266 0.980423 GCTATTAGGCAGAGGGGAGG 59.020 60.000 0.00 0.00 0.00 4.30
266 267 1.483307 GCTATTAGGCAGAGGGGAGGA 60.483 57.143 0.00 0.00 0.00 3.71
267 268 2.534990 CTATTAGGCAGAGGGGAGGAG 58.465 57.143 0.00 0.00 0.00 3.69
268 269 0.944999 ATTAGGCAGAGGGGAGGAGA 59.055 55.000 0.00 0.00 0.00 3.71
269 270 0.716591 TTAGGCAGAGGGGAGGAGAA 59.283 55.000 0.00 0.00 0.00 2.87
270 271 0.944999 TAGGCAGAGGGGAGGAGAAT 59.055 55.000 0.00 0.00 0.00 2.40
271 272 0.399806 AGGCAGAGGGGAGGAGAATC 60.400 60.000 0.00 0.00 0.00 2.52
284 285 0.657840 GAGAATCCATGGTTTCGCCG 59.342 55.000 23.64 0.00 41.21 6.46
285 286 0.748005 AGAATCCATGGTTTCGCCGG 60.748 55.000 23.64 0.00 41.21 6.13
286 287 1.001393 AATCCATGGTTTCGCCGGT 60.001 52.632 12.58 0.00 41.21 5.28
287 288 1.312371 AATCCATGGTTTCGCCGGTG 61.312 55.000 12.58 9.28 41.21 4.94
288 289 2.191786 ATCCATGGTTTCGCCGGTGA 62.192 55.000 15.21 15.21 41.21 4.02
289 290 1.969064 CCATGGTTTCGCCGGTGAA 60.969 57.895 26.19 26.19 41.21 3.18
290 291 1.501741 CATGGTTTCGCCGGTGAAG 59.498 57.895 27.92 14.19 41.21 3.02
291 292 1.072505 ATGGTTTCGCCGGTGAAGT 59.927 52.632 27.92 14.25 41.21 3.01
292 293 0.953960 ATGGTTTCGCCGGTGAAGTC 60.954 55.000 27.92 23.22 41.21 3.01
293 294 2.664436 GGTTTCGCCGGTGAAGTCG 61.664 63.158 27.92 10.51 0.00 4.18
337 338 2.742204 GCCTAGGGCTAAGGAAGAAACG 60.742 54.545 11.72 0.00 46.69 3.60
409 410 7.386573 TGACATATTACTTTTCTTGCTTCGTGA 59.613 33.333 0.00 0.00 0.00 4.35
417 418 1.739466 TCTTGCTTCGTGATGCATTCC 59.261 47.619 10.70 0.00 40.45 3.01
437 438 7.121315 GCATTCCTTCTTGTTACAATACTTCCT 59.879 37.037 0.00 0.00 0.00 3.36
466 467 4.998788 GAAACTTCACTGCTTTGTTTCCT 58.001 39.130 0.00 0.00 39.99 3.36
467 468 4.376340 AACTTCACTGCTTTGTTTCCTG 57.624 40.909 0.00 0.00 0.00 3.86
468 469 3.620488 ACTTCACTGCTTTGTTTCCTGA 58.380 40.909 0.00 0.00 0.00 3.86
469 470 3.629398 ACTTCACTGCTTTGTTTCCTGAG 59.371 43.478 0.00 0.00 0.00 3.35
470 471 3.558931 TCACTGCTTTGTTTCCTGAGA 57.441 42.857 0.00 0.00 0.00 3.27
486 487 6.179906 TCCTGAGACTGAGAACATTTCTTT 57.820 37.500 0.00 0.00 40.87 2.52
489 490 6.654161 CCTGAGACTGAGAACATTTCTTTCAT 59.346 38.462 0.00 0.00 40.87 2.57
520 521 4.085415 GCGTGAAGCTCAGAAAACAAAATG 60.085 41.667 0.00 0.00 44.04 2.32
547 548 2.561419 CTCACCCCGTAGAGAAAGACAA 59.439 50.000 0.00 0.00 33.74 3.18
549 550 1.900486 ACCCCGTAGAGAAAGACAAGG 59.100 52.381 0.00 0.00 0.00 3.61
550 551 1.900486 CCCCGTAGAGAAAGACAAGGT 59.100 52.381 0.00 0.00 0.00 3.50
552 553 2.094130 CCCGTAGAGAAAGACAAGGTCC 60.094 54.545 0.00 0.00 32.18 4.46
553 554 2.561419 CCGTAGAGAAAGACAAGGTCCA 59.439 50.000 0.00 0.00 32.18 4.02
554 555 3.576648 CGTAGAGAAAGACAAGGTCCAC 58.423 50.000 0.00 0.00 32.18 4.02
555 556 3.256136 CGTAGAGAAAGACAAGGTCCACT 59.744 47.826 0.00 0.00 32.18 4.00
556 557 4.262079 CGTAGAGAAAGACAAGGTCCACTT 60.262 45.833 0.00 0.00 41.00 3.16
557 558 4.779993 AGAGAAAGACAAGGTCCACTTT 57.220 40.909 0.00 0.00 37.29 2.66
558 559 5.888982 AGAGAAAGACAAGGTCCACTTTA 57.111 39.130 0.00 0.00 37.29 1.85
559 560 6.248569 AGAGAAAGACAAGGTCCACTTTAA 57.751 37.500 0.00 0.00 37.29 1.52
560 561 6.292150 AGAGAAAGACAAGGTCCACTTTAAG 58.708 40.000 0.00 0.00 37.29 1.85
561 562 5.377478 AGAAAGACAAGGTCCACTTTAAGG 58.623 41.667 0.00 0.00 37.29 2.69
562 563 3.141767 AGACAAGGTCCACTTTAAGGC 57.858 47.619 0.00 0.00 37.29 4.35
563 564 2.160205 GACAAGGTCCACTTTAAGGCC 58.840 52.381 0.00 0.00 37.29 5.19
564 565 1.165270 CAAGGTCCACTTTAAGGCCG 58.835 55.000 0.00 0.00 37.29 6.13
625 633 6.304922 CGCGTCTGATTGTATAATACTACCAC 59.695 42.308 0.00 0.00 0.00 4.16
628 636 8.565416 CGTCTGATTGTATAATACTACCACTGA 58.435 37.037 0.00 0.00 0.00 3.41
664 674 1.341531 CAAAACCGCCCAAACCATACA 59.658 47.619 0.00 0.00 0.00 2.29
831 848 5.030147 TCTACACCATGGATCACTTAACCT 58.970 41.667 21.47 0.00 0.00 3.50
903 920 2.159226 CCTCCGTCACTAATCACTCCAC 60.159 54.545 0.00 0.00 0.00 4.02
915 932 2.316108 TCACTCCACAGCAGTTACTCA 58.684 47.619 0.00 0.00 0.00 3.41
916 933 2.035961 TCACTCCACAGCAGTTACTCAC 59.964 50.000 0.00 0.00 0.00 3.51
968 1012 1.624479 CCACTCATCTGCAGGCTCCT 61.624 60.000 15.13 0.00 0.00 3.69
1006 1058 1.039233 AAAGGAAGCGGCCATGGATG 61.039 55.000 18.40 7.71 0.00 3.51
1012 1064 2.501128 CGGCCATGGATGTCGACT 59.499 61.111 18.40 1.84 0.00 4.18
1017 1069 1.431488 CCATGGATGTCGACTTGGCG 61.431 60.000 17.92 0.98 0.00 5.69
1110 1162 2.675423 TCCCAGTCCTCCGACGTG 60.675 66.667 0.00 0.00 44.28 4.49
1299 1351 3.118112 ACCTGGAGATGGAGCTTATGTTG 60.118 47.826 0.00 0.00 0.00 3.33
1446 3144 5.458015 CGCGAGACATGTTATTATCTACCA 58.542 41.667 0.00 0.00 0.00 3.25
1496 3201 1.600916 GCCACTTCTCACGGCCTTT 60.601 57.895 0.00 0.00 40.07 3.11
1504 3209 3.314541 TCTCACGGCCTTTCTTAGTTC 57.685 47.619 0.00 0.00 0.00 3.01
1563 3278 2.892852 CAAATCACCACCAACATCCACT 59.107 45.455 0.00 0.00 0.00 4.00
1564 3279 2.978156 ATCACCACCAACATCCACTT 57.022 45.000 0.00 0.00 0.00 3.16
1578 3293 4.202398 ACATCCACTTCGATGAAGCCATAT 60.202 41.667 5.16 0.00 42.79 1.78
1579 3294 5.012046 ACATCCACTTCGATGAAGCCATATA 59.988 40.000 5.16 0.00 42.79 0.86
1580 3295 5.745312 TCCACTTCGATGAAGCCATATAT 57.255 39.130 5.16 0.00 42.79 0.86
1581 3296 5.724328 TCCACTTCGATGAAGCCATATATC 58.276 41.667 5.16 0.00 42.79 1.63
1582 3297 4.872691 CCACTTCGATGAAGCCATATATCC 59.127 45.833 5.16 0.00 42.79 2.59
1583 3298 4.872691 CACTTCGATGAAGCCATATATCCC 59.127 45.833 5.16 0.00 42.79 3.85
1584 3299 4.080863 ACTTCGATGAAGCCATATATCCCC 60.081 45.833 5.16 0.00 42.79 4.81
1585 3300 3.449918 TCGATGAAGCCATATATCCCCA 58.550 45.455 0.00 0.00 32.09 4.96
1586 3301 4.040047 TCGATGAAGCCATATATCCCCAT 58.960 43.478 0.00 0.00 32.09 4.00
1587 3302 4.132336 CGATGAAGCCATATATCCCCATG 58.868 47.826 0.00 0.00 32.09 3.66
1588 3303 4.141642 CGATGAAGCCATATATCCCCATGA 60.142 45.833 0.00 0.00 32.09 3.07
1597 3312 5.131142 CCATATATCCCCATGAAGTACTCCC 59.869 48.000 0.00 0.00 0.00 4.30
1626 3341 6.750501 GCCCCGAATTAGTTGTCTTAAATTTC 59.249 38.462 0.00 0.00 0.00 2.17
1629 3344 8.947115 CCCGAATTAGTTGTCTTAAATTTCTCT 58.053 33.333 0.00 0.00 0.00 3.10
1637 3352 9.321562 AGTTGTCTTAAATTTCTCTAAACACGA 57.678 29.630 0.00 0.00 0.00 4.35
1685 3401 6.903883 AGATACATCCGTATGTTGACAAAC 57.096 37.500 0.00 0.00 44.07 2.93
1686 3402 6.640518 AGATACATCCGTATGTTGACAAACT 58.359 36.000 0.00 0.00 44.07 2.66
1687 3403 6.535150 AGATACATCCGTATGTTGACAAACTG 59.465 38.462 0.00 0.00 44.07 3.16
1696 3412 6.238103 CGTATGTTGACAAACTGAAGACAACT 60.238 38.462 0.00 0.00 38.51 3.16
1700 3416 8.725405 TGTTGACAAACTGAAGACAACTAATA 57.275 30.769 0.00 0.00 38.51 0.98
1703 3419 8.902540 TGACAAACTGAAGACAACTAATATGT 57.097 30.769 0.00 0.00 0.00 2.29
1704 3420 9.990360 TGACAAACTGAAGACAACTAATATGTA 57.010 29.630 0.00 0.00 0.00 2.29
1706 3422 9.772973 ACAAACTGAAGACAACTAATATGTACA 57.227 29.630 0.00 0.00 0.00 2.90
1746 3621 1.229951 TCATTCCCACAGCCTCCCT 60.230 57.895 0.00 0.00 0.00 4.20
1755 3630 4.345286 AGCCTCCCTCCACCAGCT 62.345 66.667 0.00 0.00 0.00 4.24
1757 3632 2.439104 GCCTCCCTCCACCAGCTAG 61.439 68.421 0.00 0.00 0.00 3.42
1759 3634 2.759973 TCCCTCCACCAGCTAGCG 60.760 66.667 9.55 4.28 0.00 4.26
1795 3670 0.459237 CGTCGAGCAAGATGAAGGCT 60.459 55.000 0.00 0.00 41.35 4.58
1798 3673 2.687842 GAGCAAGATGAAGGCTCGG 58.312 57.895 0.00 0.00 43.83 4.63
1827 3702 3.153024 CTTAAGGGTAAGCGCTGCA 57.847 52.632 12.58 0.00 37.97 4.41
1828 3703 1.009829 CTTAAGGGTAAGCGCTGCAG 58.990 55.000 12.58 10.11 37.97 4.41
1844 3719 1.276705 TGCAGTGGCGGAAGTATACAA 59.723 47.619 5.50 0.00 45.35 2.41
1856 3731 5.006358 CGGAAGTATACAATGTAGTGGCAAC 59.994 44.000 5.50 0.00 0.00 4.17
1875 3750 1.292223 GAAGACAGGTAGCGGTGCA 59.708 57.895 1.45 0.00 0.00 4.57
1889 3764 2.593148 TGCAACCATGGTCGCGTT 60.593 55.556 22.45 1.25 29.28 4.84
1909 3784 1.276138 TGACACACATCACTAGGCCAG 59.724 52.381 5.01 2.64 0.00 4.85
1915 3790 3.099211 ATCACTAGGCCAGCCGCAG 62.099 63.158 5.01 7.36 41.95 5.18
1978 3853 1.975363 GAGCATGCACGCAAGGAGTC 61.975 60.000 21.98 0.00 46.39 3.36
1983 3858 1.082756 GCACGCAAGGAGTCAAACG 60.083 57.895 0.00 0.00 46.39 3.60
1993 3868 4.939052 AGGAGTCAAACGGGTAGATATG 57.061 45.455 0.00 0.00 0.00 1.78
2012 3887 0.738762 GCTCTCGCAAGCAGATGTCA 60.739 55.000 4.24 0.00 42.05 3.58
2031 3906 4.241681 GTCATCCACTCTTCTCAAGTGAC 58.758 47.826 4.89 0.00 45.64 3.67
2034 3909 1.000283 CCACTCTTCTCAAGTGACGCT 60.000 52.381 4.89 0.00 45.64 5.07
2051 3926 1.661743 CGCTAGTAGAGATGTGAGCGC 60.662 57.143 0.00 0.00 45.12 5.92
2055 3930 3.469754 TAGAGATGTGAGCGCGGCG 62.470 63.158 19.62 19.62 0.00 6.46
2116 3992 1.135603 CGTCGTTCACCGGTTCATCTA 60.136 52.381 2.97 0.00 37.11 1.98
2121 3997 3.367025 CGTTCACCGGTTCATCTAAGTTC 59.633 47.826 2.97 0.00 0.00 3.01
2125 4001 4.466370 TCACCGGTTCATCTAAGTTCAGAT 59.534 41.667 2.97 0.00 35.60 2.90
2154 4030 3.526534 GAGGAGAAGTGGATTTCGAAGG 58.473 50.000 0.00 0.00 32.33 3.46
2161 4037 0.541863 TGGATTTCGAAGGAGGAGGC 59.458 55.000 0.00 0.00 0.00 4.70
2167 4043 2.579738 GAAGGAGGAGGCCGTGTC 59.420 66.667 0.00 0.00 0.00 3.67
2189 4065 2.202518 CAATGCTTTGCTCCGCCG 60.203 61.111 0.00 0.00 0.00 6.46
2205 4081 1.147153 CCGGAGAATGGGAAGGAGC 59.853 63.158 0.00 0.00 0.00 4.70
2207 4083 0.543749 CGGAGAATGGGAAGGAGCTT 59.456 55.000 0.00 0.00 0.00 3.74
2214 4090 1.742308 TGGGAAGGAGCTTTAGGTGT 58.258 50.000 0.00 0.00 0.00 4.16
2229 4105 3.438297 AGGTGTCGATTCCATTACTCG 57.562 47.619 10.61 0.00 0.00 4.18
2296 4172 0.585357 GAGCGCCTAGACATGCATTG 59.415 55.000 2.29 0.00 0.00 2.82
2305 4181 1.442526 GACATGCATTGGGGCTCGAG 61.443 60.000 8.45 8.45 34.04 4.04
2322 4198 1.662438 GAGGAGACCTCTGACTGCGG 61.662 65.000 10.16 0.00 46.41 5.69
2323 4199 2.716017 GGAGACCTCTGACTGCGGG 61.716 68.421 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 8.922237 GCTAAGGTTAGTAGTTTAGGTTAGGAT 58.078 37.037 0.00 0.00 33.32 3.24
17 18 7.067494 CGCTAAGGTTAGTAGTTTAGGTTAGGA 59.933 40.741 0.00 0.00 33.32 2.94
18 19 7.199078 CGCTAAGGTTAGTAGTTTAGGTTAGG 58.801 42.308 0.00 0.00 33.32 2.69
19 20 7.067494 TCCGCTAAGGTTAGTAGTTTAGGTTAG 59.933 40.741 0.00 0.00 41.99 2.34
20 21 6.889722 TCCGCTAAGGTTAGTAGTTTAGGTTA 59.110 38.462 0.00 0.00 41.99 2.85
21 22 5.716703 TCCGCTAAGGTTAGTAGTTTAGGTT 59.283 40.000 0.00 0.00 41.99 3.50
22 23 5.264395 TCCGCTAAGGTTAGTAGTTTAGGT 58.736 41.667 0.00 0.00 41.99 3.08
23 24 5.591877 TCTCCGCTAAGGTTAGTAGTTTAGG 59.408 44.000 0.00 0.00 41.99 2.69
24 25 6.094603 TGTCTCCGCTAAGGTTAGTAGTTTAG 59.905 42.308 0.00 0.00 41.99 1.85
25 26 5.945784 TGTCTCCGCTAAGGTTAGTAGTTTA 59.054 40.000 0.00 0.00 41.99 2.01
26 27 4.768968 TGTCTCCGCTAAGGTTAGTAGTTT 59.231 41.667 0.00 0.00 41.99 2.66
27 28 4.338879 TGTCTCCGCTAAGGTTAGTAGTT 58.661 43.478 0.00 0.00 41.99 2.24
28 29 3.960571 TGTCTCCGCTAAGGTTAGTAGT 58.039 45.455 0.00 0.00 41.99 2.73
29 30 4.319622 CGATGTCTCCGCTAAGGTTAGTAG 60.320 50.000 0.00 0.00 41.99 2.57
30 31 3.562973 CGATGTCTCCGCTAAGGTTAGTA 59.437 47.826 0.00 0.00 41.99 1.82
31 32 2.358267 CGATGTCTCCGCTAAGGTTAGT 59.642 50.000 0.00 0.00 41.99 2.24
32 33 2.287668 CCGATGTCTCCGCTAAGGTTAG 60.288 54.545 0.00 0.00 41.99 2.34
33 34 1.679680 CCGATGTCTCCGCTAAGGTTA 59.320 52.381 0.00 0.00 41.99 2.85
34 35 0.460311 CCGATGTCTCCGCTAAGGTT 59.540 55.000 0.00 0.00 41.99 3.50
35 36 1.392710 CCCGATGTCTCCGCTAAGGT 61.393 60.000 0.00 0.00 41.99 3.50
36 37 1.107538 TCCCGATGTCTCCGCTAAGG 61.108 60.000 0.00 0.00 42.97 2.69
37 38 0.962489 ATCCCGATGTCTCCGCTAAG 59.038 55.000 0.00 0.00 0.00 2.18
38 39 1.340248 GAATCCCGATGTCTCCGCTAA 59.660 52.381 0.00 0.00 0.00 3.09
39 40 0.959553 GAATCCCGATGTCTCCGCTA 59.040 55.000 0.00 0.00 0.00 4.26
40 41 1.742768 GAATCCCGATGTCTCCGCT 59.257 57.895 0.00 0.00 0.00 5.52
41 42 1.301009 GGAATCCCGATGTCTCCGC 60.301 63.158 0.00 0.00 0.00 5.54
42 43 1.367840 GGGAATCCCGATGTCTCCG 59.632 63.158 0.90 0.00 32.13 4.63
43 44 1.755384 GGGGAATCCCGATGTCTCC 59.245 63.158 12.94 0.00 46.66 3.71
54 55 3.878667 CAGGGCGGGAGGGGAATC 61.879 72.222 0.00 0.00 0.00 2.52
76 77 4.834453 CTCTGCCTGCCGCTCCAG 62.834 72.222 0.00 0.00 38.78 3.86
88 89 4.479993 ATCCGCCACTGCCTCTGC 62.480 66.667 0.00 0.00 38.26 4.26
89 90 2.202987 GATCCGCCACTGCCTCTG 60.203 66.667 0.00 0.00 0.00 3.35
90 91 3.474570 GGATCCGCCACTGCCTCT 61.475 66.667 0.00 0.00 36.34 3.69
91 92 3.746949 CTGGATCCGCCACTGCCTC 62.747 68.421 7.39 0.00 43.33 4.70
92 93 3.790437 CTGGATCCGCCACTGCCT 61.790 66.667 7.39 0.00 43.33 4.75
93 94 4.864334 CCTGGATCCGCCACTGCC 62.864 72.222 7.39 0.00 43.33 4.85
95 96 4.864334 GGCCTGGATCCGCCACTG 62.864 72.222 22.00 2.37 43.33 3.66
139 140 4.996434 AGTGACTGCCAGCCACGC 62.996 66.667 5.47 0.00 36.06 5.34
140 141 2.281070 AAGTGACTGCCAGCCACG 60.281 61.111 5.47 0.00 36.06 4.94
141 142 2.320587 CGAAGTGACTGCCAGCCAC 61.321 63.158 2.57 2.57 0.00 5.01
142 143 2.031012 CGAAGTGACTGCCAGCCA 59.969 61.111 0.00 0.00 0.00 4.75
143 144 1.598130 AACGAAGTGACTGCCAGCC 60.598 57.895 0.00 0.00 45.00 4.85
144 145 1.571460 CAACGAAGTGACTGCCAGC 59.429 57.895 0.00 0.00 45.00 4.85
145 146 1.845809 GCCAACGAAGTGACTGCCAG 61.846 60.000 0.00 0.00 45.00 4.85
146 147 1.891919 GCCAACGAAGTGACTGCCA 60.892 57.895 0.00 0.00 45.00 4.92
147 148 0.320421 TAGCCAACGAAGTGACTGCC 60.320 55.000 0.00 0.00 45.00 4.85
148 149 1.726853 ATAGCCAACGAAGTGACTGC 58.273 50.000 0.00 0.00 45.00 4.40
149 150 3.119101 ACCTATAGCCAACGAAGTGACTG 60.119 47.826 0.00 0.00 45.00 3.51
150 151 3.097614 ACCTATAGCCAACGAAGTGACT 58.902 45.455 0.00 0.00 45.00 3.41
151 152 3.521947 ACCTATAGCCAACGAAGTGAC 57.478 47.619 0.00 0.00 45.00 3.67
152 153 6.570672 CTATACCTATAGCCAACGAAGTGA 57.429 41.667 0.00 0.00 32.84 3.41
163 164 7.838983 GCAGAACACTGTAGCTATACCTATAGC 60.839 44.444 14.21 14.21 44.36 2.97
164 165 7.175119 TGCAGAACACTGTAGCTATACCTATAG 59.825 40.741 0.00 0.00 35.76 1.31
165 166 7.002276 TGCAGAACACTGTAGCTATACCTATA 58.998 38.462 0.00 0.00 34.51 1.31
166 167 5.833667 TGCAGAACACTGTAGCTATACCTAT 59.166 40.000 0.00 0.00 34.51 2.57
167 168 5.198207 TGCAGAACACTGTAGCTATACCTA 58.802 41.667 0.00 0.00 34.51 3.08
168 169 4.023980 TGCAGAACACTGTAGCTATACCT 58.976 43.478 0.00 0.00 34.51 3.08
169 170 4.386867 TGCAGAACACTGTAGCTATACC 57.613 45.455 0.00 0.00 34.51 2.73
170 171 5.812642 ACAATGCAGAACACTGTAGCTATAC 59.187 40.000 0.00 0.00 36.85 1.47
171 172 5.977635 ACAATGCAGAACACTGTAGCTATA 58.022 37.500 0.00 0.00 36.85 1.31
172 173 4.836825 ACAATGCAGAACACTGTAGCTAT 58.163 39.130 0.00 0.00 36.85 2.97
173 174 4.271696 ACAATGCAGAACACTGTAGCTA 57.728 40.909 0.00 0.00 36.85 3.32
174 175 3.131709 ACAATGCAGAACACTGTAGCT 57.868 42.857 0.00 0.00 36.85 3.32
175 176 3.904136 AACAATGCAGAACACTGTAGC 57.096 42.857 0.00 0.00 37.87 3.58
176 177 4.036734 ACCAAACAATGCAGAACACTGTAG 59.963 41.667 0.00 0.00 37.87 2.74
177 178 3.951037 ACCAAACAATGCAGAACACTGTA 59.049 39.130 0.00 0.00 37.87 2.74
178 179 2.760092 ACCAAACAATGCAGAACACTGT 59.240 40.909 0.00 0.00 41.37 3.55
179 180 3.441496 ACCAAACAATGCAGAACACTG 57.559 42.857 0.00 0.00 35.06 3.66
180 181 4.036734 CAGTACCAAACAATGCAGAACACT 59.963 41.667 0.00 0.00 0.00 3.55
181 182 4.202010 ACAGTACCAAACAATGCAGAACAC 60.202 41.667 0.00 0.00 0.00 3.32
182 183 3.951037 ACAGTACCAAACAATGCAGAACA 59.049 39.130 0.00 0.00 0.00 3.18
183 184 4.568152 ACAGTACCAAACAATGCAGAAC 57.432 40.909 0.00 0.00 0.00 3.01
184 185 5.126779 TGTACAGTACCAAACAATGCAGAA 58.873 37.500 8.30 0.00 0.00 3.02
185 186 4.709250 TGTACAGTACCAAACAATGCAGA 58.291 39.130 8.30 0.00 0.00 4.26
186 187 5.627499 ATGTACAGTACCAAACAATGCAG 57.373 39.130 8.30 0.00 0.00 4.41
187 188 5.120986 CGTATGTACAGTACCAAACAATGCA 59.879 40.000 8.30 0.00 0.00 3.96
188 189 5.121142 ACGTATGTACAGTACCAAACAATGC 59.879 40.000 8.30 0.00 0.00 3.56
189 190 6.715344 ACGTATGTACAGTACCAAACAATG 57.285 37.500 8.30 0.00 0.00 2.82
190 191 6.707161 ACAACGTATGTACAGTACCAAACAAT 59.293 34.615 8.30 0.00 41.63 2.71
191 192 6.047870 ACAACGTATGTACAGTACCAAACAA 58.952 36.000 8.30 0.00 41.63 2.83
192 193 5.599732 ACAACGTATGTACAGTACCAAACA 58.400 37.500 8.30 0.00 41.63 2.83
193 194 6.529463 AACAACGTATGTACAGTACCAAAC 57.471 37.500 8.30 3.21 42.99 2.93
194 195 6.511444 GCAAACAACGTATGTACAGTACCAAA 60.511 38.462 8.30 0.00 42.99 3.28
195 196 5.050227 GCAAACAACGTATGTACAGTACCAA 60.050 40.000 8.30 0.00 42.99 3.67
196 197 4.448395 GCAAACAACGTATGTACAGTACCA 59.552 41.667 8.30 0.00 42.99 3.25
197 198 4.143052 GGCAAACAACGTATGTACAGTACC 60.143 45.833 8.30 0.00 42.99 3.34
198 199 4.687483 AGGCAAACAACGTATGTACAGTAC 59.313 41.667 0.33 3.49 42.99 2.73
199 200 4.687018 CAGGCAAACAACGTATGTACAGTA 59.313 41.667 0.33 0.00 42.99 2.74
200 201 3.496884 CAGGCAAACAACGTATGTACAGT 59.503 43.478 0.33 0.00 42.99 3.55
201 202 3.120338 CCAGGCAAACAACGTATGTACAG 60.120 47.826 0.33 0.00 42.99 2.74
202 203 2.809119 CCAGGCAAACAACGTATGTACA 59.191 45.455 0.00 0.00 42.99 2.90
203 204 2.160813 CCCAGGCAAACAACGTATGTAC 59.839 50.000 0.00 0.00 42.99 2.90
204 205 2.428491 CCCAGGCAAACAACGTATGTA 58.572 47.619 0.00 0.00 42.99 2.29
205 206 1.243902 CCCAGGCAAACAACGTATGT 58.756 50.000 0.00 0.00 46.82 2.29
206 207 0.525761 CCCCAGGCAAACAACGTATG 59.474 55.000 0.00 0.00 0.00 2.39
207 208 2.955609 CCCCAGGCAAACAACGTAT 58.044 52.632 0.00 0.00 0.00 3.06
208 209 4.484987 CCCCAGGCAAACAACGTA 57.515 55.556 0.00 0.00 0.00 3.57
218 219 1.967494 TTAAAACGACGCCCCAGGC 60.967 57.895 0.00 0.00 46.75 4.85
219 220 1.579964 GGTTAAAACGACGCCCCAGG 61.580 60.000 0.00 0.00 0.00 4.45
220 221 0.604511 AGGTTAAAACGACGCCCCAG 60.605 55.000 0.00 0.00 0.00 4.45
221 222 0.885596 CAGGTTAAAACGACGCCCCA 60.886 55.000 0.00 0.00 0.00 4.96
222 223 1.579964 CCAGGTTAAAACGACGCCCC 61.580 60.000 0.00 0.00 0.00 5.80
223 224 1.871077 CCAGGTTAAAACGACGCCC 59.129 57.895 0.00 0.00 0.00 6.13
224 225 1.208358 GCCAGGTTAAAACGACGCC 59.792 57.895 0.00 0.00 0.00 5.68
225 226 0.385098 GTGCCAGGTTAAAACGACGC 60.385 55.000 0.00 0.00 0.00 5.19
226 227 0.236449 GGTGCCAGGTTAAAACGACG 59.764 55.000 0.00 0.00 0.00 5.12
227 228 0.236449 CGGTGCCAGGTTAAAACGAC 59.764 55.000 0.00 0.00 0.00 4.34
228 229 1.508808 GCGGTGCCAGGTTAAAACGA 61.509 55.000 0.00 0.00 0.00 3.85
229 230 1.081708 GCGGTGCCAGGTTAAAACG 60.082 57.895 0.00 0.00 0.00 3.60
230 231 1.525941 TAGCGGTGCCAGGTTAAAAC 58.474 50.000 0.00 0.00 0.00 2.43
231 232 2.500392 ATAGCGGTGCCAGGTTAAAA 57.500 45.000 0.00 0.00 0.00 1.52
232 233 2.500392 AATAGCGGTGCCAGGTTAAA 57.500 45.000 0.00 0.00 0.00 1.52
233 234 2.158871 CCTAATAGCGGTGCCAGGTTAA 60.159 50.000 0.00 0.00 0.00 2.01
234 235 1.414919 CCTAATAGCGGTGCCAGGTTA 59.585 52.381 0.00 0.00 0.00 2.85
235 236 0.180406 CCTAATAGCGGTGCCAGGTT 59.820 55.000 0.00 0.00 0.00 3.50
236 237 1.830145 CCTAATAGCGGTGCCAGGT 59.170 57.895 0.00 0.00 0.00 4.00
237 238 1.598130 GCCTAATAGCGGTGCCAGG 60.598 63.158 0.00 1.39 0.00 4.45
238 239 0.882042 CTGCCTAATAGCGGTGCCAG 60.882 60.000 0.00 0.00 34.26 4.85
239 240 1.146041 CTGCCTAATAGCGGTGCCA 59.854 57.895 0.00 0.00 34.26 4.92
240 241 0.601311 CTCTGCCTAATAGCGGTGCC 60.601 60.000 0.00 0.00 40.22 5.01
241 242 0.601311 CCTCTGCCTAATAGCGGTGC 60.601 60.000 0.00 0.00 40.22 5.01
242 243 0.034059 CCCTCTGCCTAATAGCGGTG 59.966 60.000 0.00 0.00 40.22 4.94
243 244 1.122019 CCCCTCTGCCTAATAGCGGT 61.122 60.000 0.00 0.00 40.22 5.68
244 245 0.832135 TCCCCTCTGCCTAATAGCGG 60.832 60.000 0.00 0.00 40.71 5.52
245 246 0.605589 CTCCCCTCTGCCTAATAGCG 59.394 60.000 0.00 0.00 34.65 4.26
246 247 0.980423 CCTCCCCTCTGCCTAATAGC 59.020 60.000 0.00 0.00 0.00 2.97
247 248 2.110899 TCTCCTCCCCTCTGCCTAATAG 59.889 54.545 0.00 0.00 0.00 1.73
248 249 2.152982 TCTCCTCCCCTCTGCCTAATA 58.847 52.381 0.00 0.00 0.00 0.98
249 250 0.944999 TCTCCTCCCCTCTGCCTAAT 59.055 55.000 0.00 0.00 0.00 1.73
250 251 0.716591 TTCTCCTCCCCTCTGCCTAA 59.283 55.000 0.00 0.00 0.00 2.69
251 252 0.944999 ATTCTCCTCCCCTCTGCCTA 59.055 55.000 0.00 0.00 0.00 3.93
252 253 0.399806 GATTCTCCTCCCCTCTGCCT 60.400 60.000 0.00 0.00 0.00 4.75
253 254 1.414866 GGATTCTCCTCCCCTCTGCC 61.415 65.000 0.00 0.00 32.53 4.85
254 255 0.692419 TGGATTCTCCTCCCCTCTGC 60.692 60.000 0.00 0.00 37.46 4.26
255 256 1.698532 CATGGATTCTCCTCCCCTCTG 59.301 57.143 0.00 0.00 37.46 3.35
256 257 1.415716 CCATGGATTCTCCTCCCCTCT 60.416 57.143 5.56 0.00 37.46 3.69
257 258 1.063183 CCATGGATTCTCCTCCCCTC 58.937 60.000 5.56 0.00 37.46 4.30
258 259 0.348370 ACCATGGATTCTCCTCCCCT 59.652 55.000 21.47 0.00 37.46 4.79
259 260 1.226311 AACCATGGATTCTCCTCCCC 58.774 55.000 21.47 0.00 37.46 4.81
260 261 2.746472 CGAAACCATGGATTCTCCTCCC 60.746 54.545 26.61 5.45 37.46 4.30
261 262 2.565841 CGAAACCATGGATTCTCCTCC 58.434 52.381 26.61 6.09 37.46 4.30
262 263 1.943340 GCGAAACCATGGATTCTCCTC 59.057 52.381 26.61 12.88 37.46 3.71
263 264 1.408822 GGCGAAACCATGGATTCTCCT 60.409 52.381 27.77 0.00 36.38 3.69
264 265 1.025041 GGCGAAACCATGGATTCTCC 58.975 55.000 26.61 24.96 38.86 3.71
265 266 0.657840 CGGCGAAACCATGGATTCTC 59.342 55.000 26.61 20.88 39.03 2.87
266 267 0.748005 CCGGCGAAACCATGGATTCT 60.748 55.000 26.61 6.31 39.03 2.40
267 268 1.029947 ACCGGCGAAACCATGGATTC 61.030 55.000 21.47 21.58 39.03 2.52
268 269 1.001393 ACCGGCGAAACCATGGATT 60.001 52.632 21.47 14.05 39.03 3.01
269 270 1.748879 CACCGGCGAAACCATGGAT 60.749 57.895 21.47 2.68 39.03 3.41
270 271 2.359354 CACCGGCGAAACCATGGA 60.359 61.111 21.47 0.00 39.03 3.41
271 272 1.922135 CTTCACCGGCGAAACCATGG 61.922 60.000 11.19 11.19 39.03 3.66
272 273 1.234615 ACTTCACCGGCGAAACCATG 61.235 55.000 9.30 0.00 39.03 3.66
273 274 0.953960 GACTTCACCGGCGAAACCAT 60.954 55.000 9.30 0.00 39.03 3.55
274 275 1.595929 GACTTCACCGGCGAAACCA 60.596 57.895 9.30 0.00 39.03 3.67
275 276 2.664436 CGACTTCACCGGCGAAACC 61.664 63.158 9.30 0.35 0.00 3.27
276 277 2.664436 CCGACTTCACCGGCGAAAC 61.664 63.158 9.30 3.06 40.54 2.78
277 278 2.356553 CCGACTTCACCGGCGAAA 60.357 61.111 9.30 0.00 40.54 3.46
278 279 3.277211 CTCCGACTTCACCGGCGAA 62.277 63.158 9.30 1.96 46.10 4.70
279 280 3.744719 CTCCGACTTCACCGGCGA 61.745 66.667 9.30 0.00 46.10 5.54
280 281 4.796231 CCTCCGACTTCACCGGCG 62.796 72.222 0.00 0.00 46.10 6.46
281 282 3.358076 CTCCTCCGACTTCACCGGC 62.358 68.421 0.00 0.00 46.10 6.13
283 284 0.601558 TTTCTCCTCCGACTTCACCG 59.398 55.000 0.00 0.00 0.00 4.94
284 285 1.619332 ACTTTCTCCTCCGACTTCACC 59.381 52.381 0.00 0.00 0.00 4.02
285 286 3.388345 AACTTTCTCCTCCGACTTCAC 57.612 47.619 0.00 0.00 0.00 3.18
286 287 3.134081 ACAAACTTTCTCCTCCGACTTCA 59.866 43.478 0.00 0.00 0.00 3.02
287 288 3.729966 ACAAACTTTCTCCTCCGACTTC 58.270 45.455 0.00 0.00 0.00 3.01
288 289 3.494573 GGACAAACTTTCTCCTCCGACTT 60.495 47.826 0.00 0.00 0.00 3.01
289 290 2.037381 GGACAAACTTTCTCCTCCGACT 59.963 50.000 0.00 0.00 0.00 4.18
290 291 2.037381 AGGACAAACTTTCTCCTCCGAC 59.963 50.000 0.00 0.00 27.04 4.79
291 292 2.326428 AGGACAAACTTTCTCCTCCGA 58.674 47.619 0.00 0.00 27.04 4.55
292 293 2.841442 AGGACAAACTTTCTCCTCCG 57.159 50.000 0.00 0.00 27.04 4.63
293 294 3.601435 GCTAGGACAAACTTTCTCCTCC 58.399 50.000 1.82 0.00 35.87 4.30
323 324 3.870633 TCCTCTCGTTTCTTCCTTAGC 57.129 47.619 0.00 0.00 0.00 3.09
327 328 2.229302 CGACTTCCTCTCGTTTCTTCCT 59.771 50.000 0.00 0.00 0.00 3.36
349 350 8.638873 ACTCCTAAATATGATGTGATCGTGTAA 58.361 33.333 0.00 0.00 0.00 2.41
382 383 8.015087 CACGAAGCAAGAAAAGTAATATGTCAA 58.985 33.333 0.00 0.00 0.00 3.18
383 384 7.386573 TCACGAAGCAAGAAAAGTAATATGTCA 59.613 33.333 0.00 0.00 0.00 3.58
384 385 7.739295 TCACGAAGCAAGAAAAGTAATATGTC 58.261 34.615 0.00 0.00 0.00 3.06
385 386 7.667043 TCACGAAGCAAGAAAAGTAATATGT 57.333 32.000 0.00 0.00 0.00 2.29
386 387 7.164826 GCATCACGAAGCAAGAAAAGTAATATG 59.835 37.037 0.00 0.00 0.00 1.78
387 388 7.148255 TGCATCACGAAGCAAGAAAAGTAATAT 60.148 33.333 0.00 0.00 37.90 1.28
388 389 6.148645 TGCATCACGAAGCAAGAAAAGTAATA 59.851 34.615 0.00 0.00 37.90 0.98
389 390 5.048782 TGCATCACGAAGCAAGAAAAGTAAT 60.049 36.000 0.00 0.00 37.90 1.89
390 391 4.274705 TGCATCACGAAGCAAGAAAAGTAA 59.725 37.500 0.00 0.00 37.90 2.24
409 410 7.944729 AGTATTGTAACAAGAAGGAATGCAT 57.055 32.000 0.00 0.00 0.00 3.96
437 438 5.885912 ACAAAGCAGTGAAGTTTCCTAGAAA 59.114 36.000 0.00 0.00 0.00 2.52
447 448 3.620488 TCAGGAAACAAAGCAGTGAAGT 58.380 40.909 0.00 0.00 0.00 3.01
448 449 3.879295 TCTCAGGAAACAAAGCAGTGAAG 59.121 43.478 0.00 0.00 0.00 3.02
456 457 5.118990 TGTTCTCAGTCTCAGGAAACAAAG 58.881 41.667 0.00 0.00 0.00 2.77
465 466 7.670009 ATGAAAGAAATGTTCTCAGTCTCAG 57.330 36.000 0.00 0.00 39.61 3.35
466 467 9.376075 GATATGAAAGAAATGTTCTCAGTCTCA 57.624 33.333 0.00 0.00 39.61 3.27
467 468 8.825745 GGATATGAAAGAAATGTTCTCAGTCTC 58.174 37.037 0.00 0.00 39.61 3.36
468 469 7.493971 CGGATATGAAAGAAATGTTCTCAGTCT 59.506 37.037 0.00 0.00 39.61 3.24
469 470 7.254590 CCGGATATGAAAGAAATGTTCTCAGTC 60.255 40.741 0.00 0.00 39.61 3.51
470 471 6.540189 CCGGATATGAAAGAAATGTTCTCAGT 59.460 38.462 0.00 0.00 39.61 3.41
486 487 1.299850 CTTCACGCGCCGGATATGA 60.300 57.895 5.05 0.00 0.00 2.15
489 490 3.768185 GAGCTTCACGCGCCGGATA 62.768 63.158 5.05 0.00 45.59 2.59
509 510 4.033932 GGGTGAGTTGTGCATTTTGTTTTC 59.966 41.667 0.00 0.00 0.00 2.29
520 521 0.389948 CTCTACGGGGTGAGTTGTGC 60.390 60.000 0.00 0.00 0.00 4.57
547 548 1.002502 GCGGCCTTAAAGTGGACCT 60.003 57.895 0.00 0.00 0.00 3.85
549 550 2.103537 TTAGCGGCCTTAAAGTGGAC 57.896 50.000 0.00 0.00 0.00 4.02
550 551 2.639065 CATTAGCGGCCTTAAAGTGGA 58.361 47.619 0.00 0.00 0.00 4.02
564 565 3.976169 TGAGTTGTTGTTTGCCATTAGC 58.024 40.909 0.00 0.00 44.14 3.09
625 633 1.273887 GTTGCGCGGAATCGATCAG 59.726 57.895 18.13 0.00 39.00 2.90
628 636 1.302383 TTTGGTTGCGCGGAATCGAT 61.302 50.000 18.13 0.00 39.00 3.59
664 674 0.321653 GTCGGCAGACCAGGAAATGT 60.322 55.000 5.60 0.00 41.41 2.71
831 848 2.224209 GGACCCTTTGACTTTGTCGAGA 60.224 50.000 0.00 0.00 34.95 4.04
887 904 3.257393 CTGCTGTGGAGTGATTAGTGAC 58.743 50.000 0.00 0.00 0.00 3.67
893 910 3.324846 TGAGTAACTGCTGTGGAGTGATT 59.675 43.478 0.00 0.00 0.00 2.57
903 920 1.923204 GATGAGCGTGAGTAACTGCTG 59.077 52.381 2.23 0.00 38.29 4.41
915 932 0.616111 AGGGTTCTCCAGATGAGCGT 60.616 55.000 0.00 0.00 41.18 5.07
916 933 0.539051 AAGGGTTCTCCAGATGAGCG 59.461 55.000 0.00 0.00 41.18 5.03
968 1012 1.957668 TCTACGATGAACCGGATCGA 58.042 50.000 25.57 11.62 44.46 3.59
1006 1058 3.482783 GCAGCTCGCCAAGTCGAC 61.483 66.667 7.70 7.70 34.46 4.20
1299 1351 3.191371 ACGATGAAAAGGAGCAACCAATC 59.809 43.478 0.00 0.00 42.04 2.67
1400 1459 2.109126 GCCGTGAGAAGTGGCCATC 61.109 63.158 9.72 2.64 43.06 3.51
1446 3144 6.838382 AGACTGTAGGAAAACCACTTGTAAT 58.162 36.000 0.00 0.00 0.00 1.89
1461 3166 1.476891 TGGCGCTAAAGAGACTGTAGG 59.523 52.381 7.64 0.00 0.00 3.18
1462 3167 2.164624 AGTGGCGCTAAAGAGACTGTAG 59.835 50.000 7.64 0.00 0.00 2.74
1496 3201 9.967346 CATATCTTCATTCGGTTAGAACTAAGA 57.033 33.333 8.29 8.29 42.31 2.10
1504 3209 8.662781 TTCTTTCCATATCTTCATTCGGTTAG 57.337 34.615 0.00 0.00 0.00 2.34
1563 3278 3.843619 TGGGGATATATGGCTTCATCGAA 59.156 43.478 0.00 0.00 32.59 3.71
1564 3279 3.449918 TGGGGATATATGGCTTCATCGA 58.550 45.455 0.00 0.00 32.59 3.59
1578 3293 3.439558 GGAGGGAGTACTTCATGGGGATA 60.440 52.174 2.92 0.00 0.00 2.59
1579 3294 2.695585 GAGGGAGTACTTCATGGGGAT 58.304 52.381 2.92 0.00 0.00 3.85
1580 3295 1.344087 GGAGGGAGTACTTCATGGGGA 60.344 57.143 2.92 0.00 0.00 4.81
1581 3296 1.132500 GGAGGGAGTACTTCATGGGG 58.868 60.000 2.92 0.00 0.00 4.96
1582 3297 0.753262 CGGAGGGAGTACTTCATGGG 59.247 60.000 2.92 0.00 0.00 4.00
1583 3298 0.105039 GCGGAGGGAGTACTTCATGG 59.895 60.000 2.92 0.00 0.00 3.66
1584 3299 0.105039 GGCGGAGGGAGTACTTCATG 59.895 60.000 2.92 0.00 0.00 3.07
1585 3300 1.049289 GGGCGGAGGGAGTACTTCAT 61.049 60.000 2.92 0.00 0.00 2.57
1586 3301 1.684734 GGGCGGAGGGAGTACTTCA 60.685 63.158 2.92 0.00 0.00 3.02
1587 3302 2.433146 GGGGCGGAGGGAGTACTTC 61.433 68.421 0.00 0.00 0.00 3.01
1588 3303 2.365237 GGGGCGGAGGGAGTACTT 60.365 66.667 0.00 0.00 0.00 2.24
1597 3312 0.107848 ACAACTAATTCGGGGCGGAG 60.108 55.000 0.00 0.00 0.00 4.63
1671 3387 5.651172 TGTCTTCAGTTTGTCAACATACG 57.349 39.130 0.00 0.00 35.05 3.06
1676 3392 9.599322 CATATTAGTTGTCTTCAGTTTGTCAAC 57.401 33.333 0.00 0.00 36.46 3.18
1678 3394 8.902540 ACATATTAGTTGTCTTCAGTTTGTCA 57.097 30.769 0.00 0.00 0.00 3.58
1680 3396 9.772973 TGTACATATTAGTTGTCTTCAGTTTGT 57.227 29.630 0.00 0.00 0.00 2.83
1685 3401 7.255569 TCCGTGTACATATTAGTTGTCTTCAG 58.744 38.462 0.00 0.00 0.00 3.02
1686 3402 7.121611 TCTCCGTGTACATATTAGTTGTCTTCA 59.878 37.037 0.00 0.00 0.00 3.02
1687 3403 7.478322 TCTCCGTGTACATATTAGTTGTCTTC 58.522 38.462 0.00 0.00 0.00 2.87
1696 3412 3.548616 CGGCGTTCTCCGTGTACATATTA 60.549 47.826 0.00 0.00 44.18 0.98
1700 3416 1.153901 CGGCGTTCTCCGTGTACAT 60.154 57.895 0.00 0.00 44.18 2.29
1730 3605 2.003548 GGAGGGAGGCTGTGGGAAT 61.004 63.158 0.00 0.00 0.00 3.01
1759 3634 1.318158 ACGGTATCACCTCGGACACC 61.318 60.000 0.00 0.00 35.66 4.16
1795 3670 2.381911 CCTTAAGCCTACACTACCCGA 58.618 52.381 0.00 0.00 0.00 5.14
1796 3671 1.411612 CCCTTAAGCCTACACTACCCG 59.588 57.143 0.00 0.00 0.00 5.28
1797 3672 2.475155 ACCCTTAAGCCTACACTACCC 58.525 52.381 0.00 0.00 0.00 3.69
1798 3673 5.273674 CTTACCCTTAAGCCTACACTACC 57.726 47.826 0.00 0.00 0.00 3.18
1822 3697 0.179084 TATACTTCCGCCACTGCAGC 60.179 55.000 15.27 0.00 37.32 5.25
1823 3698 1.134818 TGTATACTTCCGCCACTGCAG 60.135 52.381 13.48 13.48 37.32 4.41
1827 3702 3.906720 ACATTGTATACTTCCGCCACT 57.093 42.857 4.17 0.00 0.00 4.00
1828 3703 4.506654 CACTACATTGTATACTTCCGCCAC 59.493 45.833 4.17 0.00 0.00 5.01
1836 3711 5.333299 TCGTTGCCACTACATTGTATACT 57.667 39.130 4.17 0.00 0.00 2.12
1844 3719 2.612972 CCTGTCTTCGTTGCCACTACAT 60.613 50.000 0.00 0.00 0.00 2.29
1856 3731 1.805945 GCACCGCTACCTGTCTTCG 60.806 63.158 0.00 0.00 0.00 3.79
1875 3750 1.227704 TGTCAACGCGACCATGGTT 60.228 52.632 20.85 0.00 44.71 3.67
1886 3761 1.726791 GCCTAGTGATGTGTGTCAACG 59.273 52.381 0.00 0.00 0.00 4.10
1889 3764 1.276138 CTGGCCTAGTGATGTGTGTCA 59.724 52.381 3.32 0.00 0.00 3.58
1898 3773 3.774528 CTGCGGCTGGCCTAGTGA 61.775 66.667 3.32 0.00 42.61 3.41
1915 3790 1.985116 AACAGGGGAGCTCCGACTC 60.985 63.158 26.36 15.07 36.71 3.36
1978 3853 3.309388 CGAGAGCATATCTACCCGTTTG 58.691 50.000 0.00 0.00 38.84 2.93
2012 3887 2.353208 GCGTCACTTGAGAAGAGTGGAT 60.353 50.000 4.62 0.00 43.61 3.41
2031 3906 2.308347 CGCTCACATCTCTACTAGCG 57.692 55.000 0.00 0.00 45.48 4.26
2034 3909 0.945099 CCGCGCTCACATCTCTACTA 59.055 55.000 5.56 0.00 0.00 1.82
2055 3930 2.134287 TCTCCTCGCCCCATACAGC 61.134 63.158 0.00 0.00 0.00 4.40
2056 3931 1.742768 GTCTCCTCGCCCCATACAG 59.257 63.158 0.00 0.00 0.00 2.74
2057 3932 1.760875 GGTCTCCTCGCCCCATACA 60.761 63.158 0.00 0.00 0.00 2.29
2058 3933 2.857744 CGGTCTCCTCGCCCCATAC 61.858 68.421 0.00 0.00 0.00 2.39
2059 3934 2.520982 CGGTCTCCTCGCCCCATA 60.521 66.667 0.00 0.00 0.00 2.74
2116 3992 5.710646 TCTCCTCCTATGCTATCTGAACTT 58.289 41.667 0.00 0.00 0.00 2.66
2121 3997 4.220382 CCACTTCTCCTCCTATGCTATCTG 59.780 50.000 0.00 0.00 0.00 2.90
2125 4001 3.973472 TCCACTTCTCCTCCTATGCTA 57.027 47.619 0.00 0.00 0.00 3.49
2184 4060 2.203070 CTTCCCATTCTCCGGCGG 60.203 66.667 22.51 22.51 0.00 6.13
2185 4061 2.203070 CCTTCCCATTCTCCGGCG 60.203 66.667 0.00 0.00 0.00 6.46
2188 4064 0.543749 AAGCTCCTTCCCATTCTCCG 59.456 55.000 0.00 0.00 0.00 4.63
2189 4065 2.816777 AAAGCTCCTTCCCATTCTCC 57.183 50.000 0.00 0.00 0.00 3.71
2195 4071 1.628846 GACACCTAAAGCTCCTTCCCA 59.371 52.381 0.00 0.00 0.00 4.37
2196 4072 1.405661 CGACACCTAAAGCTCCTTCCC 60.406 57.143 0.00 0.00 0.00 3.97
2205 4081 5.459107 CGAGTAATGGAATCGACACCTAAAG 59.541 44.000 10.39 0.00 38.72 1.85
2207 4083 4.735578 GCGAGTAATGGAATCGACACCTAA 60.736 45.833 10.39 0.00 38.72 2.69
2214 4090 2.288825 GGGATGCGAGTAATGGAATCGA 60.289 50.000 0.00 0.00 38.72 3.59
2249 4125 4.225942 GCCCTTCCATCTATATCCATGACA 59.774 45.833 0.00 0.00 0.00 3.58
2282 4158 0.184451 AGCCCCAATGCATGTCTAGG 59.816 55.000 0.00 0.00 0.00 3.02
2285 4161 1.452651 CGAGCCCCAATGCATGTCT 60.453 57.895 0.00 0.00 0.00 3.41
2296 4172 2.835895 GAGGTCTCCTCGAGCCCC 60.836 72.222 6.99 3.37 41.08 5.80
2305 4181 2.716017 CCCGCAGTCAGAGGTCTCC 61.716 68.421 0.00 0.00 35.04 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.