>input_sequence_83811
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-----------ATGGATGTCGACTTGGCGAGCTGCAGCGGGAGCGAGGCGCTGTTCAAGTTCGCGGTGTTCGTCCTGGTG
CAGGCGCTGGTGTACCTCATCCTGTCCCAGTCCTCCGACGTGTTCTCCGGCGCCAGGAGCCTCGGCAGCTTCCGTCGCCC
GGCGAGGTCTGTCAGCCTCCGCCGCATGGTCACGCAGCTGCTCACGGAGATGCCGGCGGGCGGCGAGCCGTCGTCTCCGG
CCGCCAGGCAGCGGGACGGGGGATCCGACGGTGCCGGCGTGGACGTTGACCTGGAGATGGAGCTTATGTTGATTGGTTGC
TCCTTTTCATCGTGA-----------------------------------------------------------------
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>chr5D_1_TraesCS5D01G382800
CTGGAAGGACTAAAAAATCCTAACCTAAACTACTAACCTTAGCGGAGACATCGGGATTCCCCTCCCGCCCTGGCCGCTGG
AGCGGCAGGCAGAGGCAGTGGCGGATCCAGGCCCCAGGCAGCCAGGGCCTCGGCCTGGGGCGTGGCTGGCAGTCACTTCG
TTGGCTATAGGTATAGCTACAGTGTTCTGCATTGTTTGGTACTGTACATACGTTGTTTGCCTGGGGCGTCGTTTTAACCT
GGCACCGCTATTAGGCAGAGGGGAGGAGAATCCATGGTTTCGCCGGTGAAGTCGGAGGAGAAAGTTTGTCCTAGCCGCCT
AGGGCTAAGGAAGAAACGAGAGGAAGTCGTTACACGATCACATCATATTTAGGAGTATCTCTTTGACATATTACTTTTCT
TGCTTCGTGATGCATTCCTTCTTGTTACAATACTTCCTTTCTAGGAAACTTCACTGCTTTGTTTCCTGAGACTGAGAACA
TTTCTTTCATATCCGGCGCGTGAAGCTCAGAAAACAAAATGCACAACTCACCCCGTAGAGAAAGACAAGGTCCACTTTAA
GGCCGCTAATGGCAAACAACAACTCAGTAAGGCGCGCCTACGCGTCTGATT-------GTATAATACTACCACTGATCGA
TTCCGCGCAACCAAAA--CCGCCCAAACCATACACAT-TTCCTGGTCTGCCGACGCGGGAAACAAACCGAAGAGTTGACC
AAGAAGCCAACCGATAGGAACCCTAAACTTAGTTCATTCATGCAGAG------GACCATTTCAATCTCAACCAATGTAAC
AACACAATGCATGCACCGGCTGGATCTACACCATGGATCACTTAACCTCTCGACAAAGTCAAAGGGTCCGGGCATCATCT
TTAAATAGCTAGCCACGCCCTCCGTCACTAATCACTCCACAGCAGTTACTCAC----------------------GCTCA
T-CTGGAGAACCCTTCAGCCGACGACATCCAC----TCATCTGCAGGCTCCTCGATCCGGTTCATCGTAGAAAGGAAG--
------CGGCCATGGATGTCGACTTGGCGAGCTGCAGCGGGAGCGAGGCGCTGTTCAAGTTCGCGGTGTTCGTCCTGGTG
CAGGCGCTGGTGTACCTCATCCTGTCCCAGTCCTCCGACGTGTTCTCCGGCGCCAGGAGCCTCGGCAGCTTCCGTCGCCC
GGCGAGGTCTGTCAGCCTCCGCCGCATGGTCACGCAGCTGCTCACGGAGATGCCGGCGGGCGGCGAGCCGTCGTCTCCGG
CCGCCAGGCAGCGGGACGGGGGATCCGACGGTGCCGGCGTGGACGTTGACCTGGAGATGGAGCTTATGTTGATTGGTTGC
TCCTTTTCATCGTGAACTTTTTTACTTGGTGTGGGATTCTTTTTTTCTTT--AGGGGTGGTGTGGGATTCTTAGAATG--
---TAATCTCTAGGACTAGATG-------------------GCCACTTCTCACGG---CCTCCCGCGAGACATGTTATTA
T-------------------------------------------------------------------------------
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------------------CTACCATTACAAGTG-------GTTTTCCTACAGTCTCTTTAGCGCCACTTCTCACGGCCTT
TCTTAGTTCTAACCGAATGAAGATAT----------GGAAAGAAGTATAGAAATCACAAATCACCACCAACATCCACTTC
GATGAAGCCATATATCCCCATGAAGTACTCCCTCCGCCCCGAATTAGTTGTCTTAAATTTCTCTAAACACGAATGTATCT
GACATATTTTAGTATTA-GATACATCCGTATGTTGACAAACTGAAGACAACTAATATGTACA------------------
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-------------------------------------------------------------CGGAGAACGCCGGCACCAC
CGTCATTCCCACAGCCTCCCTCCACCAGCTAGCGGTGTCCGAGGTGATACCGTCGAGCAAGATGAAGGCTCGGGTAGTGT
AGGCTTAAGGGTAAGCGCTGCAGTGGCGGAAGTATACAATGTAGTGGCAACGAAGACAGGTAGCGGTGCAACCATGGTCG
CGTTGACACACATCACTAGGCCAGCCGCAGAGTCGGAGCTCCCCTGTTGCACATGCAGGCTAACGGCCAACGCGAGCATG
CACGCAAGGAGTCAAACGGGTAGATATGCTCTCGCAAGCAGATGTCATCCACTCTTCTCAAGTGACGCTAGTAGAGATGT
GAGCGCGGCGCTGTATGGGGCGAGGAGACCGCGAGCCATGGCCTCCA-TGCCGTCGTTCACCGGTTCATCTAAGTTCAGA
TAGCATAGGAGGAGAAGTGGATTTCGAAGGAGGAGGCCGTGTCGCGGCAATGCTTTGCTCCGCCGGAGAATGGGAAGGAG
CTTTAGGTGTCGATTCCATTACTCGCATCCCTTGCTAATTCCTTTGTCATGGATATAGATGGAAGGGCGACGGAGCGCCT
AGACATGCATTGGGGCTCGAGGAGACCTCTGACTGCGGG
>chr5B_289
AAATCA--------------------------------------------------------------------------
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------------------------------------------------------GAGGAGAAAGTTTGTCCTAGCCGCCT
AGGACTAGGGAAGAAACTAGAGGAAGTCGGTACACGATCACAGCATATTTAGGAGTATCTCTAC-------TACTTTTCT
TGCTTCGTGCTGCATTCTTTCTTGTTACAATACTTCC-TTCTAGGAATTTTCACTGATTTGTTTC------CTGAGAACA
TTTCTTGCACATCCGGCGCGTGAAGCTCAAAAAACAAAATACACAACTCACCCCGTAGAGAAAGACACGTCCA-------
-----CTAATGGCAAACAACAACTCAGTAAGGCGCGCATACGCGTCTGGTTATACTCCGTATAATACTACCATTGGTCGA
TTGCGCGCAACCAAAAAACCGCCCAAACAATAGGCATATTCCTGGTCTGCCGACGCGGGAAACAAACCGAAGAGTTGACC
AAGAAGGCAACCGATAGGAACCCTAAACTTAGTTCATTCATGCAGAG------GACCATTTCAATCTCAACCAATGTAAC
AACACAATGCATGCACCGGCTGGATCTACACCACGGATCACTTAACCCCTCGACAAAGTCAAAGGGTCCGGGCATCATCT
TTAAATAGCTACCCACGCCCTCCCTCACTGATCACTCTCTCCAAAGCCCTCCGTTACTGACAACTCCAGATCGAAGCTCA
TCCTGGAGAACCCTTCAGCCGACGGCATCCAC----TCATCCGCAGGCTCCCCGATCCGGTTCATCGTAGAAAGGAATTA
AGCGGCCGGCCATGGATCTCGACCTGGCCAGCTGCAGCGAGAGCGAGGCGCTGTTCAAGTTCGCGGTGTTCGTGCTGGTG
CAAGCGCTGGTGTACCTCATCCTGTCCCAGTCCTCCGACGTCTTCTCCGGCGCCAGGAGCCTCAGCGGCTTCCGTCGCCC
GGCGAGGTCCGTCAGCCTCCGTCGCATGGTCACGCAGCTGCTCACGGAGACGCCGGCGGGTGGCGAGCCGTCGTCTCCGG
CCGTCAGGCAGCGGGACGGGGGATCCGACGGTGCCGGCGTGGACGTTGACCTGGAGATGGAGCTTATGTTAATCGGTTGC
TCCTTTTCATCGTGAACTTCTTTACTTGGTGTGGGATTCTTTTTTTCTTTTGAGGGGTGGTGTGGGATTCTTAGAATGTA
CTCTAATCTCTAGGACTAAATG-------------------GCCACTTCTCACGG---CCTCCCGCGAGACATGTTATTA
TTGAGAAACAGTATAACGGGGCGAGCTAGGAGCCACCACAGCGATTTGGCGTTCTCCACCGTCGGATCACAGTCACAAAC
GTTTAGGATTATTGGTCGATCATCCCACTTCTAATTAACGAGCTCGGCTTGAGTAACTGTCTCACGGGCCGCTGCTCCAC
GGAACGAGCTCGGCTTCGCGTCGGTAATCGGGCCGTAGAGGTTGAAGGCCTACGAGGACCACTCGATTCTTTCTTCCCTT
CGTCGGTTTGTCCAATCGCCAGCTCTATCCCGAGTTTCTCCCCTTCTCAATGCTACGCCGCCGCCGCATGTGTCCCGGAG
GCGAGATTATACTGCAGGTGTACTACGACATCGGCGCCCTGTACTGTTCCTCCGCAGCCCCATGGTGGGTCCCTTCTTTC
CCTGCTGCGTTCCTTCATGGCGGTTGCGGTGGCTGCACGTGCCACCGGCGTCCTCCACCGGCAGCCGCCTCCATGCCCTT
GCAGCTGTAACATCAAGTCATATCCACGCCCTTTCCCATTCTGTACGACGCCTTCAGAACATGCAAATAATAAACTGTCT
CTGGCTCCTAATTATCTGCTCATATATAGGCCTCCTGTTACCACTATCTGCTGTTCATCCTCACGGCAGTGGCAGAATTT
TGCATGAAATTGTCCAAGTGACCAAAGATTTTATTCTGTTTGTGCAAGGTTGTGCCTATTTTGGACCATCTTGGAATTGA
TTTTCGAAATGAGCAAATGCTGCTGCTGTGGTCATCCGTACAGTTTTTTTCATGATCATGCTAATGGTAGATTTGTGCTA
CTATTAGAAATATTTCGTTGTTTTATCCTTTATTGGACTTTGATAGATGTGATCTCACGTGCAGACTGCTCTTTGTTTAC
ACTTTTTGACTAAACCAAGGTTTGTTTCCTTTGCTATTTTTTTTTCAAGTTTCTAATATTCCTCCTCAAAGTGTTATTGC
TCACAATTTATTGCTGCAAGTGTTTTGTCCCATTTTTTAGAGTCTATGCGCAAACTTAATTCCTGAAAGTAGATGTTCTT
GTTGCCAGGCACAAATTACATTAACGTGGAGTACAAGCTTAGTTCCCATGTCTCACCATTCTTCTCCTTTTCAAAATTTA
GGATTTAATTTGGTTAAGAAAGCTTCACTGAAGTGATGTGTATTAAGTATTAACATGGCCTGATTTCAGACGTAAATCCT
ATTTTCGACAAGTAGTTCGGGATATTGCTGAAGATGAAGCCGTTTGCTCGATAATGAGGGTCATGTAGATGCCTGCATTA
CCTAGCACTGTGATGTTGCTTTTTGTTTGGAGCTAAGAATGTCATTAAAGTGTACTTGCTGACGGACTCAGATCCAAATG
TCTACATTCTGCGTAACAGAATGTAGCTTAATTGTCCAATCTGTGCTGCCGTTGAGATTATGATTTGTCATGGTCTTAAC
GTACCATTGAGATTCACCATTACCAACCACTGCTTATGATAGTTTGTCTATTTAACTATATAAAATGTTAAAGCTTTGCT
ATTCTCAGTTGATTGTACTCTTTGAGATTTTTTTTCTAAATAGTTCATTTATTTGTTGTCGAGGGCGGGCGCGGCAAAGC
GCGCCTTCATGTTCTAGTCTACCGTTACAAGTG-------GTTTTGTTGCAGTCTCTTTAGCGCCACTTCTCACGGCCTT
CCTTAGTTTTAACCGAATGAAAATAT----------GGAAAGAAGTATAGAAATCACAAATCACCACCAACATCCATGAA
CTCAAATTT--------------AGTACTCCTTCCGCCCCGAATTAGTTGTCTTAAATTTATCAAGATACAGATGTATCT
GACACGTTTTAGAATTAAGATACATCTGTATCTAGGCAAATGTAAGACAACAAATTTGGGGCGGAGGTATAATTGTAACT
CTCAAAATACATGAAACCACATAAATCATACCCTTGAGTCGTTTTGAAGCTAAGATGCCAAATTTTAGGTGGTTCCGCTC
TCTAGGACGTTTACTCCTACTCTCGTTTTCCCTACTCTCTCTCTCTCTCTGGCCATGTACGCGGAGAACGCCGGCACCAC
CGTCGTTCCCACAGCCTCCCACCACCAGCCACCCGTGTCCGAGGTGATACCGTCGAGCAAGATGAAGGCATATGTAGTGT
AGGCTTAAGGGTAAGCAGTGCCATGGCGGACGTATACATTGTAGTGGCAATGAAGACAGGTAGCGGTGCGACCATGGTCG
TGTCGACACACACCACTAGGCCAACCGCAAAGTCGGAGCTCCCCTGTTGCACATGCGGGCTAATGGCCAACGCGAGCATG
CACGCAAGGAGTGAAACAGGTAGATATACTCTCGCAAGCAGATGTCGTCCACTCTTCTCAAGTGATGCCAGTAGAGATGT
GAGCGTGGC-------GGGGCGAGGAGACTGCGAGCCATGGCCTCCCTTGCCGTCGTTCACCGGTTCATCTCAGTTGAGA
CAGCATAGGAGGAGAAGTGGATTTCGAAGTAGGAGGTCGTGTTGCAACAACGCTTTGCTTTGCTAGAGAAGTGGAAGGAG
TTGTAGGTGCCGATTCCATTACTCACATCCCTTGCTAATTCCTTCGTCATGGATATAGATGGAAGGGCGACGGAGCGTCT
GGACATGCATTAGGGCTCGA-GAGACCTCTGACTGCG--
>chr5A_588
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---------------------------TAAGGCGCGCCTACGCGTGTAGTTGTATA----ATAATACTAC---TGGCCGA
TTCTGCTCGACCAAAAAACAGCCCAAACCATCCGCAG--TCCTGGTCTGCCGACGCGGGAAACCA----AAGAGTTGACC
AAGAAGCCAACCGATAGGAACCCTAAACTTAGTTCATTCATGCAGAAGCAGAAGACCATTTCAATCTCAACCAATGTAAC
AACACAATGCATGCACCGGCTGGATCTACACCATGGATCGCTTAACCCCTCGACAAAGTCAAAGGGTCCGGGCACCATCT
TTAAATAGCTAGCCACGCCCTCCCTCACTCATCACTCCAAAGCAGTTAGTACTTACTCTGTTACTCCAGATCGAAGCTCG
T-CTCGAGAACCCTTCAGCCGACGACCTCCACTCACTCATCTGCAGGCTCCCCGATCCGGTTCGTCGTAGAAAGGATGA-
---GGTCGGCCATGGATCTTGACCTGGCCAGCTGC------AGCGAGGCGCTGTTCAAGTTCGCGGTGTTCGTCCTGGTG
CAGGCGCTGGTGTACCTCATCCTGTCCCAGTCCTCCGACGTCTTCTCCGGCGCCAGGAGCCTCAGCAGCTTCCGTCGCCC
GGCGAGGTCCGTCAGCCTCCGCCGCATGGTCACGCAGCTGCTCACGGAGATGCCGGCGGGCGGCGAGCTGTCGTCTCCGG
CTGCCAGGCTGCGGGACGGGGGATCCGATGGTGCAGGCGTGGACGTTGACCTGGAGATGGAGCTTATGTTAATTGGTTGC
TCTTTTTCATCGTGAACTTTTTTACTTGGTGTGTGATTCTTAGGATGT--------------------------AACG--
---TAATTTCTAGAGGCCTAGATGGTCAGTAAATTAGTAGCGCCACTTCTCATGGCATCCTCCCGCGAGACAAGTTATTA
T-------------------------------------------------------------------------------
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------------------CTGCCGTTAGAAACGCATACCAGTTTTGTTACAGTTTCTTTAGCGCCACTTCTCACGGCCTT
CCTTAGTTTTAATTGAATGAAGAAATTTTCTAACATGGAAAGAAGTATAGAAATCACAAATCACCACCAACATCCACCGC
GATGAAGCCATA--------------------------------------------------------------------
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>SNPs
SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------
---S---S---------S-----------S------------S-------------------SSSSSSSSS---------
---------S-------S-------------------S---------SS-------S--------SSSSSS---------
------S--S-------------------S----------S--------------------------S-SS-SSSSSSSS
SSSSS-------------------------------------------S-----------------------S--S----
---------------------------------S----------------------------------------------
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-----------------------------------------------S--------------------------------
-----------------------S-----S---------S-----------SS---------------------------
---------------------------------------------------S----------------------------
-----------------S-----S----S----------S----------------------------------------
-----------------------------------------S---------------------S----------------
---------S----------------------------------------------------------------------
----------------------------------------------------------------------S---------
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------------------S-------------------------------------------------------------
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-----------------------S---------------------SS---------------------------------
S-------S--------------------------------------------------------------------SS-
------------SSSSSSSSSSS--------S----------------------------S--S-S-S--SS--------
----SS------S-------------S----S-S-S----SSS--------S---S--SSSS------------------
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----S---------------S--------S-S-S-----------------------------------SSSS-------
----------------SS---SS-------S-------S-----------S------------------S----------
S--S--------S----------S-----S--------------------------S------S----------------
------------S----S---------S------------------S------------------S--S-----------
-----S---SSSSSSS-------------S----------------S------------------------S----S---
S----------------------------S------S-----S--SS---S--------SS--SS-----SS--------
S-S------S--------------S-------------------S--------------------------------S--
S----------S--------S----------------SS
>forward_262
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--CACCGCTATTAGGCAGAGGG----------------------------------------------------------
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>reverse_3298
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-----------------CCATGAAGTACTCCCTCCGC-------------------------------------------
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