Multiple sequence alignment - TraesCS5D01G365200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5D01G365200 | chr5D | 100.000 | 2330 | 0 | 0 | 1 | 2330 | 442502934 | 442500605 | 0.000000e+00 | 4303.0 |
1 | TraesCS5D01G365200 | chr5D | 100.000 | 37 | 0 | 0 | 1943 | 1979 | 3965408 | 3965372 | 4.150000e-08 | 69.4 |
2 | TraesCS5D01G365200 | chr5A | 91.039 | 770 | 44 | 13 | 1 | 755 | 558690658 | 558689899 | 0.000000e+00 | 1016.0 |
3 | TraesCS5D01G365200 | chr5A | 92.123 | 292 | 16 | 4 | 454 | 742 | 558689834 | 558689547 | 2.790000e-109 | 405.0 |
4 | TraesCS5D01G365200 | chr5A | 88.947 | 190 | 12 | 8 | 825 | 1006 | 558689526 | 558689338 | 2.330000e-55 | 226.0 |
5 | TraesCS5D01G365200 | chr5A | 92.806 | 139 | 10 | 0 | 1135 | 1273 | 558688936 | 558688798 | 3.930000e-48 | 202.0 |
6 | TraesCS5D01G365200 | chr5A | 90.909 | 88 | 6 | 2 | 739 | 825 | 569803202 | 569803288 | 1.460000e-22 | 117.0 |
7 | TraesCS5D01G365200 | chr5B | 93.639 | 676 | 20 | 5 | 1 | 669 | 538723324 | 538722665 | 0.000000e+00 | 989.0 |
8 | TraesCS5D01G365200 | chr5B | 91.228 | 684 | 31 | 11 | 667 | 1339 | 538722551 | 538721886 | 0.000000e+00 | 904.0 |
9 | TraesCS5D01G365200 | chr5B | 92.114 | 317 | 15 | 5 | 1603 | 1912 | 316763550 | 316763863 | 2.750000e-119 | 438.0 |
10 | TraesCS5D01G365200 | chr5B | 90.127 | 314 | 21 | 5 | 1606 | 1912 | 613263350 | 613263040 | 1.300000e-107 | 399.0 |
11 | TraesCS5D01G365200 | chr5B | 88.889 | 297 | 18 | 7 | 1362 | 1657 | 538721192 | 538720910 | 3.680000e-93 | 351.0 |
12 | TraesCS5D01G365200 | chr5B | 89.209 | 278 | 18 | 3 | 1990 | 2255 | 538720546 | 538720269 | 1.030000e-88 | 337.0 |
13 | TraesCS5D01G365200 | chr6B | 91.055 | 559 | 31 | 9 | 1362 | 1912 | 157015905 | 157015358 | 0.000000e+00 | 737.0 |
14 | TraesCS5D01G365200 | chr6B | 90.966 | 476 | 26 | 7 | 1445 | 1912 | 357513918 | 357514384 | 1.970000e-175 | 625.0 |
15 | TraesCS5D01G365200 | chr4B | 91.483 | 317 | 17 | 5 | 1603 | 1912 | 48006582 | 48006269 | 5.950000e-116 | 427.0 |
16 | TraesCS5D01G365200 | chr4B | 91.815 | 281 | 16 | 3 | 1606 | 1879 | 515891976 | 515891696 | 3.630000e-103 | 385.0 |
17 | TraesCS5D01G365200 | chr4B | 88.043 | 92 | 10 | 1 | 744 | 834 | 322674033 | 322674124 | 8.800000e-20 | 108.0 |
18 | TraesCS5D01G365200 | chr7B | 91.167 | 317 | 18 | 5 | 1603 | 1912 | 120369629 | 120369316 | 2.770000e-114 | 422.0 |
19 | TraesCS5D01G365200 | chr7B | 88.372 | 86 | 8 | 2 | 744 | 829 | 713284362 | 713284279 | 4.100000e-18 | 102.0 |
20 | TraesCS5D01G365200 | chrUn | 90.536 | 317 | 18 | 7 | 1603 | 1912 | 37015586 | 37015897 | 2.160000e-110 | 409.0 |
21 | TraesCS5D01G365200 | chr1B | 90.221 | 317 | 21 | 5 | 1603 | 1912 | 634032846 | 634033159 | 2.790000e-109 | 405.0 |
22 | TraesCS5D01G365200 | chr2D | 79.695 | 197 | 31 | 7 | 547 | 740 | 626676742 | 626676932 | 1.450000e-27 | 134.0 |
23 | TraesCS5D01G365200 | chr2D | 86.813 | 91 | 10 | 1 | 744 | 834 | 547882293 | 547882381 | 1.470000e-17 | 100.0 |
24 | TraesCS5D01G365200 | chr3D | 89.583 | 96 | 6 | 3 | 755 | 849 | 556145718 | 556145810 | 4.070000e-23 | 119.0 |
25 | TraesCS5D01G365200 | chr3A | 89.583 | 96 | 6 | 3 | 755 | 849 | 693161955 | 693162047 | 4.070000e-23 | 119.0 |
26 | TraesCS5D01G365200 | chr3A | 88.506 | 87 | 9 | 1 | 744 | 829 | 358268356 | 358268442 | 1.140000e-18 | 104.0 |
27 | TraesCS5D01G365200 | chr4A | 88.043 | 92 | 10 | 1 | 744 | 834 | 342448628 | 342448719 | 8.800000e-20 | 108.0 |
28 | TraesCS5D01G365200 | chr4D | 86.957 | 92 | 11 | 1 | 744 | 834 | 179860424 | 179860333 | 4.100000e-18 | 102.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5D01G365200 | chr5D | 442500605 | 442502934 | 2329 | True | 4303.00 | 4303 | 100.00000 | 1 | 2330 | 1 | chr5D.!!$R2 | 2329 |
1 | TraesCS5D01G365200 | chr5A | 558688798 | 558690658 | 1860 | True | 462.25 | 1016 | 91.22875 | 1 | 1273 | 4 | chr5A.!!$R1 | 1272 |
2 | TraesCS5D01G365200 | chr5B | 538720269 | 538723324 | 3055 | True | 645.25 | 989 | 90.74125 | 1 | 2255 | 4 | chr5B.!!$R2 | 2254 |
3 | TraesCS5D01G365200 | chr6B | 157015358 | 157015905 | 547 | True | 737.00 | 737 | 91.05500 | 1362 | 1912 | 1 | chr6B.!!$R1 | 550 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
225 | 238 | 0.680618 | TTAGGGCGAACAGAAACCGA | 59.319 | 50.0 | 0.0 | 0.0 | 0.0 | 4.69 | F |
1192 | 2010 | 0.814457 | TATTGGTGCGTTCATTGGGC | 59.186 | 50.0 | 0.0 | 0.0 | 0.0 | 5.36 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1278 | 2101 | 0.035630 | GAGCTGGCCTCACATCAAGT | 60.036 | 55.0 | 3.32 | 0.0 | 40.45 | 3.16 | R |
2044 | 3632 | 0.108756 | GACACCGTGTCTAGCCTTCC | 60.109 | 60.0 | 22.08 | 0.0 | 43.73 | 3.46 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
225 | 238 | 0.680618 | TTAGGGCGAACAGAAACCGA | 59.319 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
314 | 327 | 6.306356 | GCAATGATGTGCATAATCGTAAATCC | 59.694 | 38.462 | 7.31 | 0.00 | 44.29 | 3.01 |
404 | 417 | 9.934190 | ATTGATTTTCAAGTTTTTGTGCAATAC | 57.066 | 25.926 | 0.00 | 0.00 | 40.05 | 1.89 |
405 | 418 | 8.715191 | TGATTTTCAAGTTTTTGTGCAATACT | 57.285 | 26.923 | 0.00 | 0.00 | 35.73 | 2.12 |
486 | 499 | 6.552445 | AGCCATCTTAAGTTGTCAGTAGAT | 57.448 | 37.500 | 11.63 | 0.00 | 0.00 | 1.98 |
488 | 501 | 6.820656 | AGCCATCTTAAGTTGTCAGTAGATTG | 59.179 | 38.462 | 11.63 | 0.00 | 0.00 | 2.67 |
585 | 607 | 6.747414 | TGAAGCTCCATACAACACCTATAT | 57.253 | 37.500 | 0.00 | 0.00 | 0.00 | 0.86 |
586 | 608 | 7.849322 | TGAAGCTCCATACAACACCTATATA | 57.151 | 36.000 | 0.00 | 0.00 | 0.00 | 0.86 |
742 | 1246 | 9.817365 | CAACATTCTTACAAGACTACAGAAATG | 57.183 | 33.333 | 0.00 | 0.00 | 34.13 | 2.32 |
749 | 1253 | 4.042187 | ACAAGACTACAGAAATGCTCCCTT | 59.958 | 41.667 | 0.00 | 0.00 | 0.00 | 3.95 |
751 | 1255 | 3.118956 | AGACTACAGAAATGCTCCCTTCG | 60.119 | 47.826 | 0.00 | 0.00 | 0.00 | 3.79 |
784 | 1288 | 5.751243 | AGTGTCGTGCTTTTAGTTCAAAT | 57.249 | 34.783 | 0.00 | 0.00 | 0.00 | 2.32 |
785 | 1289 | 6.131544 | AGTGTCGTGCTTTTAGTTCAAATT | 57.868 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
786 | 1290 | 6.560711 | AGTGTCGTGCTTTTAGTTCAAATTT | 58.439 | 32.000 | 0.00 | 0.00 | 0.00 | 1.82 |
787 | 1291 | 6.472163 | AGTGTCGTGCTTTTAGTTCAAATTTG | 59.528 | 34.615 | 12.15 | 12.15 | 0.00 | 2.32 |
788 | 1292 | 6.470877 | GTGTCGTGCTTTTAGTTCAAATTTGA | 59.529 | 34.615 | 16.91 | 16.91 | 34.92 | 2.69 |
789 | 1293 | 7.008810 | GTGTCGTGCTTTTAGTTCAAATTTGAA | 59.991 | 33.333 | 26.01 | 26.01 | 44.31 | 2.69 |
813 | 1317 | 9.113876 | GAACTAAAACCATGACACTTATTTTCG | 57.886 | 33.333 | 0.00 | 0.00 | 0.00 | 3.46 |
817 | 1321 | 6.627395 | AACCATGACACTTATTTTCGAACA | 57.373 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
850 | 1354 | 6.757010 | AGTAGTAAATAAGACTCACATTGCCG | 59.243 | 38.462 | 0.00 | 0.00 | 0.00 | 5.69 |
863 | 1367 | 4.457257 | TCACATTGCCGATTTATGTGTCAA | 59.543 | 37.500 | 12.52 | 0.00 | 45.76 | 3.18 |
864 | 1368 | 5.125257 | TCACATTGCCGATTTATGTGTCAAT | 59.875 | 36.000 | 12.52 | 0.00 | 45.76 | 2.57 |
1020 | 1532 | 5.066505 | GGACATGATGGTGGAATCTGTTAAC | 59.933 | 44.000 | 0.00 | 0.00 | 0.00 | 2.01 |
1107 | 1620 | 3.891422 | AATGCATTGGGTGTGTATTGG | 57.109 | 42.857 | 12.09 | 0.00 | 31.96 | 3.16 |
1108 | 1621 | 2.593925 | TGCATTGGGTGTGTATTGGA | 57.406 | 45.000 | 0.00 | 0.00 | 0.00 | 3.53 |
1109 | 1622 | 2.445427 | TGCATTGGGTGTGTATTGGAG | 58.555 | 47.619 | 0.00 | 0.00 | 0.00 | 3.86 |
1119 | 1632 | 7.107542 | TGGGTGTGTATTGGAGTAGTTATTTC | 58.892 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
1141 | 1959 | 2.113139 | AAGACGGGCCCAGTGTTG | 59.887 | 61.111 | 24.92 | 6.57 | 0.00 | 3.33 |
1192 | 2010 | 0.814457 | TATTGGTGCGTTCATTGGGC | 59.186 | 50.000 | 0.00 | 0.00 | 0.00 | 5.36 |
1248 | 2066 | 4.023193 | CCTTTGCTGTTCCAGACGTTTTAT | 60.023 | 41.667 | 0.00 | 0.00 | 32.44 | 1.40 |
1307 | 2130 | 1.451028 | GGCCAGCTCCACATCTGTC | 60.451 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
1339 | 2162 | 3.967987 | ACCCATATCCTGACCTGAAGTAC | 59.032 | 47.826 | 0.00 | 0.00 | 0.00 | 2.73 |
1340 | 2163 | 3.325135 | CCCATATCCTGACCTGAAGTACC | 59.675 | 52.174 | 0.00 | 0.00 | 0.00 | 3.34 |
1342 | 2165 | 5.394738 | CCATATCCTGACCTGAAGTACCTA | 58.605 | 45.833 | 0.00 | 0.00 | 0.00 | 3.08 |
1343 | 2166 | 5.839063 | CCATATCCTGACCTGAAGTACCTAA | 59.161 | 44.000 | 0.00 | 0.00 | 0.00 | 2.69 |
1345 | 2168 | 7.016661 | CCATATCCTGACCTGAAGTACCTAAAT | 59.983 | 40.741 | 0.00 | 0.00 | 0.00 | 1.40 |
1346 | 2169 | 5.934402 | TCCTGACCTGAAGTACCTAAATC | 57.066 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
1348 | 2171 | 5.422331 | TCCTGACCTGAAGTACCTAAATCTG | 59.578 | 44.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1349 | 2172 | 5.187967 | CCTGACCTGAAGTACCTAAATCTGT | 59.812 | 44.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1350 | 2173 | 6.380274 | CCTGACCTGAAGTACCTAAATCTGTA | 59.620 | 42.308 | 0.00 | 0.00 | 0.00 | 2.74 |
1351 | 2174 | 7.166691 | TGACCTGAAGTACCTAAATCTGTAC | 57.833 | 40.000 | 0.00 | 0.00 | 38.06 | 2.90 |
1352 | 2175 | 6.154021 | TGACCTGAAGTACCTAAATCTGTACC | 59.846 | 42.308 | 0.00 | 0.00 | 38.45 | 3.34 |
1353 | 2176 | 5.424573 | ACCTGAAGTACCTAAATCTGTACCC | 59.575 | 44.000 | 0.00 | 0.00 | 38.45 | 3.69 |
1354 | 2177 | 5.424252 | CCTGAAGTACCTAAATCTGTACCCA | 59.576 | 44.000 | 0.00 | 0.00 | 38.45 | 4.51 |
1356 | 2179 | 7.289317 | CCTGAAGTACCTAAATCTGTACCCATA | 59.711 | 40.741 | 0.00 | 0.00 | 38.45 | 2.74 |
1359 | 2182 | 9.708092 | GAAGTACCTAAATCTGTACCCATATTC | 57.292 | 37.037 | 0.00 | 0.00 | 38.45 | 1.75 |
1521 | 3016 | 2.208132 | ATCGGGCACTCGATCTCTAT | 57.792 | 50.000 | 0.00 | 0.00 | 45.43 | 1.98 |
1523 | 3018 | 0.242286 | CGGGCACTCGATCTCTATGG | 59.758 | 60.000 | 0.00 | 0.00 | 0.00 | 2.74 |
1524 | 3019 | 1.333177 | GGGCACTCGATCTCTATGGT | 58.667 | 55.000 | 0.00 | 0.00 | 0.00 | 3.55 |
1544 | 3039 | 3.440522 | GGTGCCAAAAGAACCTACAGATC | 59.559 | 47.826 | 0.00 | 0.00 | 41.79 | 2.75 |
1546 | 3041 | 2.678336 | GCCAAAAGAACCTACAGATCGG | 59.322 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
1548 | 3043 | 4.622220 | GCCAAAAGAACCTACAGATCGGTA | 60.622 | 45.833 | 5.57 | 5.57 | 32.07 | 4.02 |
1558 | 3053 | 6.746120 | ACCTACAGATCGGTACATCATTTAC | 58.254 | 40.000 | 1.18 | 0.00 | 0.00 | 2.01 |
1570 | 3065 | 5.627182 | ACATCATTTACTGAGGATCTGCT | 57.373 | 39.130 | 0.00 | 0.00 | 37.89 | 4.24 |
1576 | 3071 | 5.426689 | TTTACTGAGGATCTGCTTCACAT | 57.573 | 39.130 | 0.00 | 0.00 | 37.61 | 3.21 |
1586 | 3081 | 4.662468 | TCTGCTTCACATAGAGGATCAC | 57.338 | 45.455 | 0.00 | 0.00 | 37.82 | 3.06 |
1638 | 3133 | 9.148879 | ACTCTCATGTAGTATAAGTATTGCCTT | 57.851 | 33.333 | 2.24 | 0.00 | 0.00 | 4.35 |
1643 | 3138 | 8.765219 | CATGTAGTATAAGTATTGCCTTGTCAC | 58.235 | 37.037 | 0.00 | 0.00 | 0.00 | 3.67 |
1657 | 3152 | 3.380004 | CCTTGTCACTGTGGTAAGCAAAA | 59.620 | 43.478 | 8.11 | 0.00 | 0.00 | 2.44 |
1666 | 3220 | 9.290988 | TCACTGTGGTAAGCAAAATAATTCTTA | 57.709 | 29.630 | 8.11 | 0.00 | 0.00 | 2.10 |
1672 | 3226 | 9.168451 | TGGTAAGCAAAATAATTCTTATCGACA | 57.832 | 29.630 | 0.00 | 0.00 | 0.00 | 4.35 |
1692 | 3246 | 6.768861 | TCGACAAGGATTTCTAAAGGTCAAAA | 59.231 | 34.615 | 0.00 | 0.00 | 0.00 | 2.44 |
1841 | 3401 | 1.962807 | CAATCTCAAAGGCCACCACAA | 59.037 | 47.619 | 5.01 | 0.00 | 0.00 | 3.33 |
1887 | 3447 | 1.584175 | CTAATGCAGCAGGAGAGCAG | 58.416 | 55.000 | 0.00 | 0.00 | 42.14 | 4.24 |
1888 | 3448 | 0.463295 | TAATGCAGCAGGAGAGCAGC | 60.463 | 55.000 | 0.00 | 0.00 | 45.86 | 5.25 |
1890 | 3450 | 2.820479 | GCAGCAGGAGAGCAGCAG | 60.820 | 66.667 | 0.00 | 0.00 | 45.12 | 4.24 |
1912 | 3472 | 3.618507 | GCACTGACCAGTCTAGCTTGAAT | 60.619 | 47.826 | 0.00 | 0.00 | 40.20 | 2.57 |
1913 | 3473 | 4.180057 | CACTGACCAGTCTAGCTTGAATC | 58.820 | 47.826 | 0.00 | 0.00 | 40.20 | 2.52 |
1914 | 3474 | 4.081752 | CACTGACCAGTCTAGCTTGAATCT | 60.082 | 45.833 | 0.00 | 0.00 | 40.20 | 2.40 |
1915 | 3475 | 4.081752 | ACTGACCAGTCTAGCTTGAATCTG | 60.082 | 45.833 | 0.00 | 4.26 | 36.92 | 2.90 |
1916 | 3476 | 3.834813 | TGACCAGTCTAGCTTGAATCTGT | 59.165 | 43.478 | 12.47 | 6.17 | 0.00 | 3.41 |
1917 | 3477 | 4.180057 | GACCAGTCTAGCTTGAATCTGTG | 58.820 | 47.826 | 12.47 | 8.08 | 0.00 | 3.66 |
1918 | 3478 | 2.935201 | CCAGTCTAGCTTGAATCTGTGC | 59.065 | 50.000 | 12.47 | 0.00 | 0.00 | 4.57 |
1919 | 3479 | 3.369261 | CCAGTCTAGCTTGAATCTGTGCT | 60.369 | 47.826 | 12.47 | 0.00 | 39.30 | 4.40 |
1920 | 3480 | 3.617706 | CAGTCTAGCTTGAATCTGTGCTG | 59.382 | 47.826 | 0.00 | 0.00 | 37.02 | 4.41 |
1921 | 3481 | 3.260380 | AGTCTAGCTTGAATCTGTGCTGT | 59.740 | 43.478 | 0.00 | 0.00 | 37.02 | 4.40 |
1922 | 3482 | 4.464244 | AGTCTAGCTTGAATCTGTGCTGTA | 59.536 | 41.667 | 0.00 | 0.00 | 37.02 | 2.74 |
1923 | 3483 | 4.564769 | GTCTAGCTTGAATCTGTGCTGTAC | 59.435 | 45.833 | 0.00 | 0.00 | 37.02 | 2.90 |
1924 | 3484 | 3.407424 | AGCTTGAATCTGTGCTGTACA | 57.593 | 42.857 | 0.00 | 0.00 | 37.78 | 2.90 |
1925 | 3485 | 3.947868 | AGCTTGAATCTGTGCTGTACAT | 58.052 | 40.909 | 0.00 | 0.00 | 38.92 | 2.29 |
1930 | 3490 | 4.498241 | TGAATCTGTGCTGTACATCACTC | 58.502 | 43.478 | 25.48 | 16.89 | 38.92 | 3.51 |
1938 | 3498 | 5.067805 | TGTGCTGTACATCACTCCTATGTAG | 59.932 | 44.000 | 25.48 | 0.00 | 39.76 | 2.74 |
1945 | 3505 | 3.596940 | TCACTCCTATGTAGTCCCTCC | 57.403 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
1957 | 3517 | 4.472108 | TGTAGTCCCTCCGTTCCATAATTT | 59.528 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
1960 | 3520 | 6.069705 | AGTCCCTCCGTTCCATAATTTTTA | 57.930 | 37.500 | 0.00 | 0.00 | 0.00 | 1.52 |
1962 | 3522 | 6.771267 | AGTCCCTCCGTTCCATAATTTTTATC | 59.229 | 38.462 | 0.00 | 0.00 | 0.00 | 1.75 |
2001 | 3589 | 5.298347 | AGGTTCTGCTCTGTTACAGTTTAC | 58.702 | 41.667 | 12.41 | 1.60 | 35.37 | 2.01 |
2021 | 3609 | 3.460825 | ACACTGGGGGATTAGAGCTAAA | 58.539 | 45.455 | 0.00 | 0.00 | 0.00 | 1.85 |
2044 | 3632 | 1.546476 | ACTAACGGTGCCTCTCTGAAG | 59.454 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
2075 | 3663 | 3.340727 | CGGTGTCGTTGAGGGTATC | 57.659 | 57.895 | 0.00 | 0.00 | 0.00 | 2.24 |
2090 | 3678 | 3.197983 | AGGGTATCTTTCTGTTTCCCTCG | 59.802 | 47.826 | 0.00 | 0.00 | 39.44 | 4.63 |
2127 | 3715 | 0.681564 | TTTCAACCACACGGCCAACT | 60.682 | 50.000 | 2.24 | 0.00 | 34.57 | 3.16 |
2137 | 3725 | 2.218603 | CACGGCCAACTTACAGTTTCT | 58.781 | 47.619 | 2.24 | 0.00 | 36.03 | 2.52 |
2156 | 3745 | 7.955864 | CAGTTTCTTATTTAGCACTTACGGTTC | 59.044 | 37.037 | 0.00 | 0.00 | 0.00 | 3.62 |
2167 | 3756 | 2.229784 | ACTTACGGTTCGGGAAGTACAG | 59.770 | 50.000 | 6.26 | 0.00 | 36.13 | 2.74 |
2168 | 3757 | 1.176527 | TACGGTTCGGGAAGTACAGG | 58.823 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2171 | 3760 | 0.035739 | GGTTCGGGAAGTACAGGCAA | 59.964 | 55.000 | 0.00 | 0.00 | 0.00 | 4.52 |
2234 | 3833 | 3.281727 | TGGAGTACCAAGCAATCCATC | 57.718 | 47.619 | 0.00 | 0.00 | 43.91 | 3.51 |
2235 | 3834 | 2.846206 | TGGAGTACCAAGCAATCCATCT | 59.154 | 45.455 | 0.00 | 0.00 | 43.91 | 2.90 |
2236 | 3835 | 3.209410 | GGAGTACCAAGCAATCCATCTG | 58.791 | 50.000 | 0.00 | 0.00 | 35.97 | 2.90 |
2237 | 3836 | 3.370953 | GGAGTACCAAGCAATCCATCTGT | 60.371 | 47.826 | 0.00 | 0.00 | 35.97 | 3.41 |
2238 | 3837 | 4.141711 | GGAGTACCAAGCAATCCATCTGTA | 60.142 | 45.833 | 0.00 | 0.00 | 35.97 | 2.74 |
2239 | 3838 | 4.770795 | AGTACCAAGCAATCCATCTGTAC | 58.229 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
2240 | 3839 | 4.471386 | AGTACCAAGCAATCCATCTGTACT | 59.529 | 41.667 | 0.00 | 0.00 | 34.44 | 2.73 |
2241 | 3840 | 4.307032 | ACCAAGCAATCCATCTGTACTT | 57.693 | 40.909 | 0.00 | 0.00 | 0.00 | 2.24 |
2242 | 3841 | 4.012374 | ACCAAGCAATCCATCTGTACTTG | 58.988 | 43.478 | 0.00 | 0.00 | 34.30 | 3.16 |
2243 | 3842 | 4.012374 | CCAAGCAATCCATCTGTACTTGT | 58.988 | 43.478 | 0.00 | 0.00 | 33.00 | 3.16 |
2244 | 3843 | 4.460382 | CCAAGCAATCCATCTGTACTTGTT | 59.540 | 41.667 | 0.00 | 0.00 | 33.00 | 2.83 |
2245 | 3844 | 5.647658 | CCAAGCAATCCATCTGTACTTGTTA | 59.352 | 40.000 | 0.00 | 0.00 | 33.00 | 2.41 |
2246 | 3845 | 6.319658 | CCAAGCAATCCATCTGTACTTGTTAT | 59.680 | 38.462 | 0.00 | 0.00 | 33.00 | 1.89 |
2247 | 3846 | 7.498900 | CCAAGCAATCCATCTGTACTTGTTATA | 59.501 | 37.037 | 0.00 | 0.00 | 33.00 | 0.98 |
2248 | 3847 | 9.060347 | CAAGCAATCCATCTGTACTTGTTATAT | 57.940 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
2249 | 3848 | 9.632638 | AAGCAATCCATCTGTACTTGTTATATT | 57.367 | 29.630 | 0.00 | 0.00 | 0.00 | 1.28 |
2250 | 3849 | 9.632638 | AGCAATCCATCTGTACTTGTTATATTT | 57.367 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
2251 | 3850 | 9.884465 | GCAATCCATCTGTACTTGTTATATTTC | 57.116 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
2275 | 3874 | 8.893219 | TCTAATATGATTCTTGCAGTACCAAG | 57.107 | 34.615 | 5.72 | 5.72 | 42.73 | 3.61 |
2278 | 3877 | 0.804989 | ATTCTTGCAGTACCAAGCGC | 59.195 | 50.000 | 0.00 | 0.00 | 41.47 | 5.92 |
2287 | 3886 | 1.450134 | TACCAAGCGCTGCCATCTG | 60.450 | 57.895 | 12.58 | 3.61 | 0.00 | 2.90 |
2323 | 3922 | 8.621532 | ATTTCTAAACTAGCATGTTGACTTCA | 57.378 | 30.769 | 0.00 | 0.00 | 0.00 | 3.02 |
2324 | 3923 | 8.445275 | TTTCTAAACTAGCATGTTGACTTCAA | 57.555 | 30.769 | 0.00 | 0.00 | 0.00 | 2.69 |
2325 | 3924 | 7.658179 | TCTAAACTAGCATGTTGACTTCAAG | 57.342 | 36.000 | 0.00 | 0.00 | 36.39 | 3.02 |
2326 | 3925 | 5.695851 | AAACTAGCATGTTGACTTCAAGG | 57.304 | 39.130 | 0.00 | 0.00 | 36.39 | 3.61 |
2327 | 3926 | 4.623932 | ACTAGCATGTTGACTTCAAGGA | 57.376 | 40.909 | 0.00 | 0.00 | 36.39 | 3.36 |
2328 | 3927 | 5.171339 | ACTAGCATGTTGACTTCAAGGAT | 57.829 | 39.130 | 0.00 | 0.00 | 36.39 | 3.24 |
2329 | 3928 | 4.940046 | ACTAGCATGTTGACTTCAAGGATG | 59.060 | 41.667 | 0.00 | 0.06 | 36.39 | 3.51 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
225 | 238 | 3.010584 | ACTGATATCCAAGTGGGCTGTTT | 59.989 | 43.478 | 0.00 | 0.00 | 36.21 | 2.83 |
314 | 327 | 1.069204 | AGTGCAGCCTACCATCATACG | 59.931 | 52.381 | 0.00 | 0.00 | 0.00 | 3.06 |
486 | 499 | 6.419791 | CCATCTACCCTATAAACACCAACAA | 58.580 | 40.000 | 0.00 | 0.00 | 0.00 | 2.83 |
488 | 501 | 4.820173 | GCCATCTACCCTATAAACACCAAC | 59.180 | 45.833 | 0.00 | 0.00 | 0.00 | 3.77 |
698 | 836 | 9.415544 | AGAATGTTGATGTTTTAATCAAGCTTC | 57.584 | 29.630 | 0.00 | 6.58 | 44.96 | 3.86 |
734 | 1238 | 1.339151 | GGACGAAGGGAGCATTTCTGT | 60.339 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
742 | 1246 | 2.413310 | TATTTTGGGACGAAGGGAGC | 57.587 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
749 | 1253 | 3.061322 | CACGACACTTATTTTGGGACGA | 58.939 | 45.455 | 0.00 | 0.00 | 0.00 | 4.20 |
751 | 1255 | 2.812011 | AGCACGACACTTATTTTGGGAC | 59.188 | 45.455 | 0.00 | 0.00 | 0.00 | 4.46 |
786 | 1290 | 9.959749 | GAAAATAAGTGTCATGGTTTTAGTTCA | 57.040 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
787 | 1291 | 9.113876 | CGAAAATAAGTGTCATGGTTTTAGTTC | 57.886 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
788 | 1292 | 8.842280 | TCGAAAATAAGTGTCATGGTTTTAGTT | 58.158 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
789 | 1293 | 8.385898 | TCGAAAATAAGTGTCATGGTTTTAGT | 57.614 | 30.769 | 0.00 | 0.00 | 0.00 | 2.24 |
790 | 1294 | 9.113876 | GTTCGAAAATAAGTGTCATGGTTTTAG | 57.886 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
791 | 1295 | 8.622157 | TGTTCGAAAATAAGTGTCATGGTTTTA | 58.378 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
792 | 1296 | 7.484975 | TGTTCGAAAATAAGTGTCATGGTTTT | 58.515 | 30.769 | 0.00 | 0.00 | 0.00 | 2.43 |
793 | 1297 | 7.012894 | TCTGTTCGAAAATAAGTGTCATGGTTT | 59.987 | 33.333 | 0.00 | 0.00 | 0.00 | 3.27 |
813 | 1317 | 8.407832 | GTCTTATTTACTACTCTCCCTCTGTTC | 58.592 | 40.741 | 0.00 | 0.00 | 0.00 | 3.18 |
817 | 1321 | 7.776500 | GTGAGTCTTATTTACTACTCTCCCTCT | 59.224 | 40.741 | 0.00 | 0.00 | 39.27 | 3.69 |
850 | 1354 | 5.524646 | CCCATGCCAAATTGACACATAAATC | 59.475 | 40.000 | 0.00 | 0.00 | 0.00 | 2.17 |
863 | 1367 | 0.043032 | ACCATGACCCCATGCCAAAT | 59.957 | 50.000 | 0.00 | 0.00 | 46.73 | 2.32 |
864 | 1368 | 0.903924 | CACCATGACCCCATGCCAAA | 60.904 | 55.000 | 0.00 | 0.00 | 46.73 | 3.28 |
1020 | 1532 | 1.795872 | TGAACACACTTAATCGCCACG | 59.204 | 47.619 | 0.00 | 0.00 | 0.00 | 4.94 |
1131 | 1644 | 1.021968 | AAACGTCTTCAACACTGGGC | 58.978 | 50.000 | 0.00 | 0.00 | 0.00 | 5.36 |
1141 | 1959 | 8.333186 | ACTGTTCATACAAGTAAAAACGTCTTC | 58.667 | 33.333 | 0.00 | 0.00 | 32.92 | 2.87 |
1204 | 2022 | 3.655211 | AAGCCTGGCTGAGTGGGG | 61.655 | 66.667 | 24.16 | 0.00 | 39.62 | 4.96 |
1248 | 2066 | 8.573035 | GTTGTACCAAGGAATACATTTTTCTGA | 58.427 | 33.333 | 0.00 | 0.00 | 31.55 | 3.27 |
1274 | 2097 | 2.625737 | CTGGCCTCACATCAAGTACAG | 58.374 | 52.381 | 3.32 | 0.00 | 0.00 | 2.74 |
1278 | 2101 | 0.035630 | GAGCTGGCCTCACATCAAGT | 60.036 | 55.000 | 3.32 | 0.00 | 40.45 | 3.16 |
1285 | 2108 | 1.451028 | GATGTGGAGCTGGCCTCAC | 60.451 | 63.158 | 3.32 | 5.61 | 42.62 | 3.51 |
1307 | 2130 | 6.498651 | AGGTCAGGATATGGGTACAGATTTAG | 59.501 | 42.308 | 0.00 | 0.00 | 0.00 | 1.85 |
1339 | 2162 | 7.944554 | ACCAATGAATATGGGTACAGATTTAGG | 59.055 | 37.037 | 0.00 | 0.00 | 38.93 | 2.69 |
1340 | 2163 | 8.786898 | CACCAATGAATATGGGTACAGATTTAG | 58.213 | 37.037 | 0.00 | 0.00 | 38.64 | 1.85 |
1342 | 2165 | 6.040842 | GCACCAATGAATATGGGTACAGATTT | 59.959 | 38.462 | 0.00 | 0.00 | 38.64 | 2.17 |
1343 | 2166 | 5.536161 | GCACCAATGAATATGGGTACAGATT | 59.464 | 40.000 | 0.00 | 0.00 | 38.64 | 2.40 |
1345 | 2168 | 4.165950 | AGCACCAATGAATATGGGTACAGA | 59.834 | 41.667 | 0.00 | 0.00 | 38.64 | 3.41 |
1346 | 2169 | 4.276678 | CAGCACCAATGAATATGGGTACAG | 59.723 | 45.833 | 0.00 | 0.00 | 38.64 | 2.74 |
1348 | 2171 | 3.004734 | GCAGCACCAATGAATATGGGTAC | 59.995 | 47.826 | 0.00 | 0.00 | 38.64 | 3.34 |
1349 | 2172 | 3.221771 | GCAGCACCAATGAATATGGGTA | 58.778 | 45.455 | 0.00 | 0.00 | 38.64 | 3.69 |
1350 | 2173 | 2.034124 | GCAGCACCAATGAATATGGGT | 58.966 | 47.619 | 0.00 | 0.00 | 41.56 | 4.51 |
1351 | 2174 | 2.033372 | TGCAGCACCAATGAATATGGG | 58.967 | 47.619 | 0.00 | 0.00 | 42.48 | 4.00 |
1352 | 2175 | 3.804786 | TTGCAGCACCAATGAATATGG | 57.195 | 42.857 | 0.00 | 0.00 | 43.84 | 2.74 |
1353 | 2176 | 5.466819 | CCTATTGCAGCACCAATGAATATG | 58.533 | 41.667 | 0.00 | 0.00 | 36.21 | 1.78 |
1354 | 2177 | 4.021719 | GCCTATTGCAGCACCAATGAATAT | 60.022 | 41.667 | 0.00 | 0.00 | 40.77 | 1.28 |
1356 | 2179 | 2.101917 | GCCTATTGCAGCACCAATGAAT | 59.898 | 45.455 | 0.00 | 0.00 | 40.77 | 2.57 |
1359 | 2182 | 1.108776 | AGCCTATTGCAGCACCAATG | 58.891 | 50.000 | 0.00 | 3.32 | 44.83 | 2.82 |
1485 | 2979 | 1.998315 | CGATTGTGTGAGAGCTTCCTG | 59.002 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
1521 | 3016 | 2.173782 | TCTGTAGGTTCTTTTGGCACCA | 59.826 | 45.455 | 0.00 | 0.00 | 32.43 | 4.17 |
1523 | 3018 | 3.125316 | CGATCTGTAGGTTCTTTTGGCAC | 59.875 | 47.826 | 0.00 | 0.00 | 0.00 | 5.01 |
1524 | 3019 | 3.334691 | CGATCTGTAGGTTCTTTTGGCA | 58.665 | 45.455 | 0.00 | 0.00 | 0.00 | 4.92 |
1544 | 3039 | 5.923114 | CAGATCCTCAGTAAATGATGTACCG | 59.077 | 44.000 | 0.00 | 0.00 | 37.28 | 4.02 |
1546 | 3041 | 6.520272 | AGCAGATCCTCAGTAAATGATGTAC | 58.480 | 40.000 | 0.00 | 0.00 | 37.28 | 2.90 |
1548 | 3043 | 5.627182 | AGCAGATCCTCAGTAAATGATGT | 57.373 | 39.130 | 0.00 | 0.00 | 37.28 | 3.06 |
1558 | 3053 | 4.262121 | CCTCTATGTGAAGCAGATCCTCAG | 60.262 | 50.000 | 0.00 | 0.00 | 0.00 | 3.35 |
1570 | 3065 | 6.266330 | CCTATCAGTGTGATCCTCTATGTGAA | 59.734 | 42.308 | 0.00 | 0.00 | 38.26 | 3.18 |
1576 | 3071 | 4.816048 | ACCCTATCAGTGTGATCCTCTA | 57.184 | 45.455 | 0.00 | 0.00 | 38.26 | 2.43 |
1638 | 3133 | 6.892658 | ATTATTTTGCTTACCACAGTGACA | 57.107 | 33.333 | 0.62 | 0.00 | 0.00 | 3.58 |
1643 | 3138 | 9.438291 | CGATAAGAATTATTTTGCTTACCACAG | 57.562 | 33.333 | 0.00 | 0.00 | 42.35 | 3.66 |
1666 | 3220 | 6.049955 | TGACCTTTAGAAATCCTTGTCGAT | 57.950 | 37.500 | 0.00 | 0.00 | 0.00 | 3.59 |
1887 | 3447 | 0.739112 | GCTAGACTGGTCAGTGCTGC | 60.739 | 60.000 | 8.49 | 5.85 | 42.66 | 5.25 |
1888 | 3448 | 0.894141 | AGCTAGACTGGTCAGTGCTG | 59.106 | 55.000 | 8.49 | 0.00 | 42.66 | 4.41 |
1889 | 3449 | 1.274728 | CAAGCTAGACTGGTCAGTGCT | 59.725 | 52.381 | 8.49 | 8.28 | 42.66 | 4.40 |
1890 | 3450 | 1.273606 | TCAAGCTAGACTGGTCAGTGC | 59.726 | 52.381 | 8.49 | 6.12 | 42.66 | 4.40 |
1916 | 3476 | 5.201243 | ACTACATAGGAGTGATGTACAGCA | 58.799 | 41.667 | 10.32 | 10.32 | 38.47 | 4.41 |
1917 | 3477 | 5.278561 | GGACTACATAGGAGTGATGTACAGC | 60.279 | 48.000 | 3.61 | 3.61 | 38.47 | 4.40 |
1918 | 3478 | 5.241949 | GGGACTACATAGGAGTGATGTACAG | 59.758 | 48.000 | 0.33 | 0.00 | 38.47 | 2.74 |
1919 | 3479 | 5.103643 | AGGGACTACATAGGAGTGATGTACA | 60.104 | 44.000 | 0.00 | 0.00 | 38.47 | 2.90 |
1920 | 3480 | 5.386924 | AGGGACTACATAGGAGTGATGTAC | 58.613 | 45.833 | 0.00 | 0.00 | 38.47 | 2.90 |
1921 | 3481 | 5.457778 | GGAGGGACTACATAGGAGTGATGTA | 60.458 | 48.000 | 0.00 | 0.00 | 40.63 | 2.29 |
1922 | 3482 | 4.475345 | GAGGGACTACATAGGAGTGATGT | 58.525 | 47.826 | 0.00 | 0.00 | 41.55 | 3.06 |
1923 | 3483 | 3.829601 | GGAGGGACTACATAGGAGTGATG | 59.170 | 52.174 | 0.00 | 0.00 | 40.63 | 3.07 |
1924 | 3484 | 3.498841 | CGGAGGGACTACATAGGAGTGAT | 60.499 | 52.174 | 0.00 | 0.00 | 41.36 | 3.06 |
1925 | 3485 | 2.158652 | CGGAGGGACTACATAGGAGTGA | 60.159 | 54.545 | 0.00 | 0.00 | 41.36 | 3.41 |
1930 | 3490 | 1.962100 | GGAACGGAGGGACTACATAGG | 59.038 | 57.143 | 0.00 | 0.00 | 41.36 | 2.57 |
1938 | 3498 | 6.293244 | CGATAAAAATTATGGAACGGAGGGAC | 60.293 | 42.308 | 0.00 | 0.00 | 0.00 | 4.46 |
1945 | 3505 | 8.455598 | AAAACCACGATAAAAATTATGGAACG | 57.544 | 30.769 | 0.00 | 0.00 | 0.00 | 3.95 |
1957 | 3517 | 7.571080 | ACCTTTGAACTAAAACCACGATAAA | 57.429 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
1960 | 3520 | 5.826208 | AGAACCTTTGAACTAAAACCACGAT | 59.174 | 36.000 | 0.00 | 0.00 | 0.00 | 3.73 |
1962 | 3522 | 5.270853 | CAGAACCTTTGAACTAAAACCACG | 58.729 | 41.667 | 0.00 | 0.00 | 0.00 | 4.94 |
1975 | 3535 | 4.130118 | ACTGTAACAGAGCAGAACCTTTG | 58.870 | 43.478 | 0.00 | 0.00 | 36.62 | 2.77 |
1976 | 3536 | 4.423625 | ACTGTAACAGAGCAGAACCTTT | 57.576 | 40.909 | 0.00 | 0.00 | 36.62 | 3.11 |
2001 | 3589 | 4.713792 | ATTTAGCTCTAATCCCCCAGTG | 57.286 | 45.455 | 0.00 | 0.00 | 0.00 | 3.66 |
2007 | 3595 | 7.384387 | CACCGTTAGTTATTTAGCTCTAATCCC | 59.616 | 40.741 | 0.00 | 0.00 | 0.00 | 3.85 |
2021 | 3609 | 3.362706 | TCAGAGAGGCACCGTTAGTTAT | 58.637 | 45.455 | 0.00 | 0.00 | 0.00 | 1.89 |
2044 | 3632 | 0.108756 | GACACCGTGTCTAGCCTTCC | 60.109 | 60.000 | 22.08 | 0.00 | 43.73 | 3.46 |
2063 | 3651 | 4.392138 | GGAAACAGAAAGATACCCTCAACG | 59.608 | 45.833 | 0.00 | 0.00 | 0.00 | 4.10 |
2069 | 3657 | 3.532542 | CGAGGGAAACAGAAAGATACCC | 58.467 | 50.000 | 0.00 | 0.00 | 36.47 | 3.69 |
2075 | 3663 | 1.002544 | AGAGGCGAGGGAAACAGAAAG | 59.997 | 52.381 | 0.00 | 0.00 | 0.00 | 2.62 |
2127 | 3715 | 8.928733 | CCGTAAGTGCTAAATAAGAAACTGTAA | 58.071 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
2137 | 3725 | 4.081752 | TCCCGAACCGTAAGTGCTAAATAA | 60.082 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
2156 | 3745 | 1.482593 | AGATCTTGCCTGTACTTCCCG | 59.517 | 52.381 | 0.00 | 0.00 | 0.00 | 5.14 |
2167 | 3756 | 2.430465 | TGAGCTCACAAAGATCTTGCC | 58.570 | 47.619 | 13.74 | 3.05 | 41.17 | 4.52 |
2168 | 3757 | 4.874966 | AGTATGAGCTCACAAAGATCTTGC | 59.125 | 41.667 | 20.97 | 7.67 | 41.17 | 4.01 |
2171 | 3760 | 5.929058 | TCAGTATGAGCTCACAAAGATCT | 57.071 | 39.130 | 20.97 | 2.59 | 42.56 | 2.75 |
2216 | 3815 | 3.878778 | ACAGATGGATTGCTTGGTACTC | 58.121 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
2217 | 3816 | 4.471386 | AGTACAGATGGATTGCTTGGTACT | 59.529 | 41.667 | 0.00 | 0.00 | 36.36 | 2.73 |
2218 | 3817 | 4.770795 | AGTACAGATGGATTGCTTGGTAC | 58.229 | 43.478 | 0.00 | 0.00 | 0.00 | 3.34 |
2219 | 3818 | 5.185454 | CAAGTACAGATGGATTGCTTGGTA | 58.815 | 41.667 | 0.00 | 0.00 | 0.00 | 3.25 |
2220 | 3819 | 4.012374 | CAAGTACAGATGGATTGCTTGGT | 58.988 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
2221 | 3820 | 4.012374 | ACAAGTACAGATGGATTGCTTGG | 58.988 | 43.478 | 0.00 | 0.00 | 36.96 | 3.61 |
2222 | 3821 | 5.633830 | AACAAGTACAGATGGATTGCTTG | 57.366 | 39.130 | 0.00 | 0.00 | 38.14 | 4.01 |
2223 | 3822 | 9.632638 | AATATAACAAGTACAGATGGATTGCTT | 57.367 | 29.630 | 0.00 | 0.00 | 0.00 | 3.91 |
2224 | 3823 | 9.632638 | AAATATAACAAGTACAGATGGATTGCT | 57.367 | 29.630 | 0.00 | 0.00 | 0.00 | 3.91 |
2225 | 3824 | 9.884465 | GAAATATAACAAGTACAGATGGATTGC | 57.116 | 33.333 | 0.00 | 0.00 | 0.00 | 3.56 |
2247 | 3846 | 9.851686 | TGGTACTGCAAGAATCATATTAGAAAT | 57.148 | 29.630 | 0.00 | 0.00 | 37.43 | 2.17 |
2248 | 3847 | 9.679661 | TTGGTACTGCAAGAATCATATTAGAAA | 57.320 | 29.630 | 0.00 | 0.00 | 37.43 | 2.52 |
2249 | 3848 | 9.330063 | CTTGGTACTGCAAGAATCATATTAGAA | 57.670 | 33.333 | 6.11 | 0.00 | 37.43 | 2.10 |
2250 | 3849 | 7.442364 | GCTTGGTACTGCAAGAATCATATTAGA | 59.558 | 37.037 | 14.00 | 0.00 | 37.43 | 2.10 |
2251 | 3850 | 7.570140 | CGCTTGGTACTGCAAGAATCATATTAG | 60.570 | 40.741 | 14.00 | 0.00 | 37.43 | 1.73 |
2252 | 3851 | 6.202762 | CGCTTGGTACTGCAAGAATCATATTA | 59.797 | 38.462 | 14.00 | 0.00 | 37.43 | 0.98 |
2253 | 3852 | 5.008019 | CGCTTGGTACTGCAAGAATCATATT | 59.992 | 40.000 | 14.00 | 0.00 | 37.43 | 1.28 |
2254 | 3853 | 4.512944 | CGCTTGGTACTGCAAGAATCATAT | 59.487 | 41.667 | 14.00 | 0.00 | 37.43 | 1.78 |
2255 | 3854 | 3.871006 | CGCTTGGTACTGCAAGAATCATA | 59.129 | 43.478 | 14.00 | 0.00 | 37.43 | 2.15 |
2256 | 3855 | 2.679837 | CGCTTGGTACTGCAAGAATCAT | 59.320 | 45.455 | 14.00 | 0.00 | 37.43 | 2.45 |
2257 | 3856 | 2.076100 | CGCTTGGTACTGCAAGAATCA | 58.924 | 47.619 | 14.00 | 0.00 | 37.43 | 2.57 |
2258 | 3857 | 1.202076 | GCGCTTGGTACTGCAAGAATC | 60.202 | 52.381 | 14.00 | 1.32 | 37.43 | 2.52 |
2259 | 3858 | 0.804989 | GCGCTTGGTACTGCAAGAAT | 59.195 | 50.000 | 14.00 | 0.00 | 37.43 | 2.40 |
2260 | 3859 | 0.250295 | AGCGCTTGGTACTGCAAGAA | 60.250 | 50.000 | 2.64 | 0.00 | 37.43 | 2.52 |
2261 | 3860 | 0.950555 | CAGCGCTTGGTACTGCAAGA | 60.951 | 55.000 | 7.50 | 0.00 | 37.43 | 3.02 |
2262 | 3861 | 1.499056 | CAGCGCTTGGTACTGCAAG | 59.501 | 57.895 | 7.50 | 7.33 | 42.29 | 4.01 |
2263 | 3862 | 3.654201 | CAGCGCTTGGTACTGCAA | 58.346 | 55.556 | 7.50 | 0.00 | 0.00 | 4.08 |
2275 | 3874 | 1.021390 | ACAAGTACAGATGGCAGCGC | 61.021 | 55.000 | 0.00 | 0.00 | 0.00 | 5.92 |
2278 | 3877 | 8.668510 | AGAAATATAACAAGTACAGATGGCAG | 57.331 | 34.615 | 0.00 | 0.00 | 0.00 | 4.85 |
2306 | 3905 | 4.623932 | TCCTTGAAGTCAACATGCTAGT | 57.376 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
2307 | 3906 | 5.481200 | CATCCTTGAAGTCAACATGCTAG | 57.519 | 43.478 | 0.00 | 0.00 | 0.00 | 3.42 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.