>input_sequence_83678
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-----------------------------------------------------------------------ATGATGGTG
GAATCTGTTAACGTGGCGATTAAGTGTGTTCAGGAGCTGATAGAAAAAA-CAAGACACTTCAATCAAACCAGCATGCATA
ATGCATTGGGTGTGTATTGGAGTAGTTATTTCGTTCAAGACGGGCC----------------------------------
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-------------------------------CAGTGTTGAAGACGTTTTTACTTGTATGAACAGTGGTTTTATTGGTGCG
TTCATTGGGCTTTACAAGAAGCCCCACTCAGCCAGGCTTGGACCTTTGCTGTTCCAGACGTTTTATCAGAAAAATGTATT
C-----CTTGGTACAACTGTACTTGATGTGAGGCCAGCTCCACATCTGTCTAAATCTGTACCCATATCCTGA--------
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>chr5D_1_TraesCS5D01G365200
AGGTGAACATCATTCCTG-TTTTTATTCCTTTAGTCATC---GCACATGTGCAGTGCATCTTTCTGAATATCTATACACA
AGTTTTTTGTCATTGACTTTTAGTTTAGAAAGAATTAGATATAACTACATTTTAGAAA--TATTGGAAGATGCTCGACCT
TTTTGTCTTCGGTTTGATGGTACAGAGCGTGTTCTTTCTTTTGCCAAAGGTGTTAGGG------CGAACAGAAACCGAAA
CAGCCCACTTGGATATCAGTGTAGAAATGGTTGTGTAGATCAAAACTGCATGCAGGGATAAGCAATGATGTGCATAATCG
TAAATCCGTATGATGGTAGGCTGCACTTTAGGACTGTAGCATGTGACATCTCCAGTTGTTTTCAGATCTGATTGATTTTC
AAGTTTTTGTGCAATACTATATCAAACAAATGTGCATTTACTACTCTTGCAGTCAGAATTGAGTTGTCAGATTTAAGCCA
TCTTAAGTTGTCAGTAGATTGTTGGTGTTTATAGGGTAGATGGCAGAATTGCTTCCTGCTCCATTGCAACTCT--GACCA
ACCTTAACCTGAACTTTGAAG-------CTCCATACAACACCTATATAGTTAGCTGAAGGCTTGATAGACTATGGGTCCG
GGTCACTGAATTTCATTGTAGTCACAAGTTGAACTCTGCCATTAAGAT--------------------------------
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----ATTTGAAAACAAGATTTGATATAATTATTTCGAAGCTTGATT-AAAACATCAAC----------------------
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-----------------------ATTCTTACAAGACTACAGAAATGCTCCCTTCGTCCCAAAATAAGTGTCGTGCTTTTA
GTTCAAATTTGAACTAAAACCATGACACTTATTTTCGAACAGAGGGAGAGTAGTAAATAAGACTCACATTGCCGATTTAT
GTGTCAATT-----TGGCATGGGGTCATGG-TGCATGCTGATGTTCCACTCTCGGACAGAGAGTGCAAGCACAGTGTAAC
ATCACAACATTTCACATGATTGAATTTCTAAAAGACCTT--TGAAATGCACTTTTCAGTTTTGAGTTGGACATGATGGTG
GAATCTGTTAACGTGGCGATTAAGTGTGTTCAGGAGCTGATAGAAAAAA-CAAGACACTTCAATCAAACCAGCATGCATA
ATGCATTGGGTGTGTATTGGAGTAGTTATTTCGTTCAAGACGGGCC----------------------------------
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-------------------------------CAGTGTTGAAGACGTTTTTACTTGTATGAACAGTGGTTTTATTGGTGCG
TTCATTGGGCTTTACAAGAAGCCCCACTCAGCCAGGCTTGGACCTTTGCTGTTCCAGACGTTTTATCAGAAAAATGTATT
C-----CTTGGTACAACTGTACTTGATGTGAGGCCAGCTCCACATCTGTCTAAATCTGTACCCATATCCTGACCTGAAGT
ACCTAAATCTGTACCCATATTCA---------------------------------------------------------
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------------------------------------------------------TTGGTGCTGCAATAGGCTTTCAGATT
ATGTCCTTATTTGTCGAATATATGCTAGAAAGAAGGAATTTTCTGAAGAATGCTTGAAAGGCAGAGTTCAGCAAACAAAT
GACAATTATTTGTCCCCTCAGGAAGCTCTCACACAATCGGGCA-CTCGATCTCTATGGTGCCAAAAGAACCTACAGATCG
GTACATCATTTACTGAGGATCTGCTTCACATAGAGGATCACACTGATAGGGTTACCCAGCCAAAAAACTCTCATGTAGTA
TAAGTATTGCCTTGTCACTGTGGTAAGCAAAA------------------------------------------------
-----------TAATTCTTATCGACAAGGATTTCTAAAGGTCAAAAATAGTAATCTTTGACCAAGTTTATAAAGAAAATC
ATTTATATCTGCAATACCAAGTATATACA----GTATGAAAATATGTCTCATGATGTATCTATTGATAT--ACACTTGGT
ATTCTAAAATTCTAATGAGTCAATCTCAAAGGCCACCACAACAGAACACAATTAAGTTGGAATATACCTAATGCAGCAGG
AGAGCAGCAGCACTGACCAGTCTAGCTTGAATCTGTGCTGTACATCACTCCTATGTAGTCCCTCCGTTCCATAATTTTTA
TCGTGGTTTTAGTTCA---------------------AAGGTTCTGCTC-------TGTTACAGTTTACACTGGGGGATT
AGAGCTAAATAACTAACGGTGCCTCTCTGAAGGAAGGCTAGACACGGTGTCGTTGAGGGTATCTTTCTGTTTCCCTCGCC
TCTCAGTTGCACTAATTTCAACCACACGGCCAACTTACAGTTTCTTATTTAGCACTT-ACGGTTCGGGAAGTACAGGCAA
GATCTTTGTGAGCTCATAC----------TGATATGATATGAATATGATTCTTGGAGTACCAAGCAATCCATCTGTACTT
GTTATATTTCTAATATGATTCTTGCAGTACCAAGCGCTGCCATCTGTACTTGTTATATTTCTAAACTAGCATGTTGACTT
CAAGGATG
>chr5A_1
AGGTGAACATTATTCCTTCTTTTTATTCCTTTAGTCATCTTCGCATATGTGCAGTGCATCTTTCTGAATTTCTATACTCA
TGTTTTTTGTTATTGACTTTTAGTTCAGAGAGAATTAGGTATAACTACCTTTTAGAAATTTATTGGAAGATTCTTGACCT
TTTTGTCTTAGGTTAGATGGTACAGAGCGTGTTCTTTCTTTTGCTAAAGGTGTTAGGACTTGGACGAACAGAA--CGGAA
CAACCCACTTGGATATCAGTGTAGAATTGGTTGTGTAGATCAAAACTGCATGCAGGGATAAGCAATGATGTGCATAATCG
TAAATCAGTATGATGGTATGCTGCACTTTAGGACTGTAGCATGTGACATCTCCAATTGTTTCCAGATCTGATTGATTTTG
AAGTTTTTGTGCAAT---ATATCAAACAAATGTGCATTTACTATTCTTGCAGTCAGAATTGAGTTGTCAGATTTAAGCCA
TCTTAAGTTGTCAGTAGAATATTGGTGTTTATAGGGTAGATGGCAGAATTGCTTCCTGCTGCATTGCAACTCTCTGACCA
ACCTTAACCTGAACTTTGAAG-------CTCCCTACAACACCTAA----TTAGCTGAAGGCTTGATAGACTTCGCGCCCA
GGTCACTGAATTTCAGTGTAGTCACAAGTTGAACTCTGCCATTAAGAT--------------------------------
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----ATTTGAAAACAAGATTTAATATTATTATTTCCAAGCTTGGTT-AAAACATCAACTATTCTTACAAGACTTAAGAAA
TACTACTTCCTCCGTCGGAGGGAGTGGTAAATAAGACCCACATTGCTAATTTATATGTCATATTGTCATGGCATGGGGTC
AGATTTAAGCCATCTTAAGTTGTCAGTAGAATATTGGTGTTTATAGGGTAGATGGCAGAATTGCTTCCTGCTGCATTGCA
ACTCTCTGACCAACCTTAACCTGAACTTTGAAGCTCCCTACAACACCTAATTAGCTGAAGGCTTGATAGACTTCGCGCCC
AGGTCACTGAATTTCAGTGTAGTCACAAGTTGAACTCTGCCATTAAGATATTTGAAAACAAGATTTAATATTATTATTTC
CAAGCTTGGTTAAAACATCAACTATTCTTACAAGACTTAAGAAATATTACTTCCTCCGTCGGAGG---------------
-----------------------------------------------GAGTGGTAAATAAGACCCACATTGCTAATTTAT
ATGTCATATTGTCATGGCATGGGGTCATGGATGCATGCTGATGTACCACTCCCGGACACAGAGTGCAAGCACAGTGC-AC
ATCACAAGATTCCACATGATTGAATATCTAAAAAGACCTTGTGAAATGCACTTTTCAGTTTTGAGTTGGACATGATGTC-
----------------------AGCGTGTTGAGGAGCTGATAGAAAAAAGCAAGACAATTCAATCAAACCAGCATGCAT-
------TGGGTGTGTCTGG---TAATTATTTTGTTGTACGGCTTTTGAGTGTTCTCCTATGGTTGAGAAGAACGCGTTAA
AGTCTTTGTGCCTTTGTCAGCTTTGAACACTGGGTGCATGGAACAATTATATGGTGACCATGGCCTTGATGTCATGGATG
TCATGATATGTCATTTGAATATGTAGCTTTAGAAACTCATGAAGATCTTATCAGATCATCAAGTACTCTTGTGGCTCTGC
AGATCACGTTGATAAAGTGACGAGACCCTGGACAAGATTCATGGAACTTATTTTGGGAGTTCAGCCCTGAGTTCACGGTG
TTCAAGATGCAGGTGTGGTGAAACCGAAGAACAGTGTTCTAGACGTTTTTACTTGTATGAACAGTGGTACTATTGGTGCG
TTCACTGGGGTTTACAACAAGTCCCACTCAGCCAGGCTTGGACCTTTGCTGTTCCAGATGTTTTACCAGAAAAATGTATT
C-----CTTGGTACA-----------------------------------------------------------------
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>chr5B_1
AGGTGAACATCATTCCTG-TTTTTATTCTTTCAGTCATC---GCACATGTGCAGTGCATCTTTCTGAATATCTATACACA
AGTTTTTTGTCA--GACTTTTAGTTGTGAAAGAATTAGGTATAACTACATTTTAGAAA--TATTGGAAGATGCTCGACCT
TTTTGTCTTCAGTTTGATGGTACAGAGCGTGTTCTTTCTTTTGCCAAATGTGTGAGGG------CGAACAGAAACTGCAA
CAGCCCACTTGGATATCAGGGTAGAAATGGTTGTGCAGATCAAAACTGCATGCAGGGATAAGGAATGATGTGCATAATCG
TAAATCTGTATGATGGTAGGCTGCACTTTAGGACTG---------ACATCTCCAGTTGTTTTCAGATCTGATTGATTTTC
AAGTTTTTGTGCAAT---ATATCAAACAAATGTGCATTTACTACTCTTGCAGTCAGAATTGAGTTGTGAGATTTAAGCCA
TCTTAAGTTGTCAGTAGAATATTGGTGTTTATAGGGTAAATGGCAGAATTGCTTCCTGCTCCATTGCAACTCT--GGCCA
ACCTTAACCTGAACTTTGAAGTTTGAAGCTCCATACAACACCTATA--GTTAGCTAAAGGCTTGATAGACTATGGGTCCG
GGTCACTGAATTTCATTGTAGTCACAAGTTGAACTCTGCCATTAAGATATACTCCCTCCGTCCGGAAATACTTGTCGAAG
AAATGCATAAAATGAATGTATCTAGAACTAAAATATGTCTAGATACATCCATTCCTACGACAAGTATTTCCGGACAGAGG
GGGTATTTGAAAACAAGATTTGATATAATTATTTCCAAGCTTGATTAAAAGCATCAAC----------------------
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-----------------------ATTCTTACAAGACTTCAGAAATACTCCCTCCATTCCAAAATAAGTGTCGTGCTTTTA
GTTCAAA----------AACCATGACACTTATTTTCAAACGGAGGGAGAGTAGTAAATAAGACTCGCATCGCCAATTTAT
GTCA---ATTGTCATGGCATGGGGTCATGG-TGCATGCTGATGTTCCACTCTCGGACAGAGAGTGCAAGCACAGTGTAAC
ATCACAACATTTCACATGATTGAATTTCTAGAAGACCTT--TGAAATGCACTTTTCAGTTTTGAGTTGGACATGATGGTG
GAATCTGTTAATGTGGCGATTAAGTGTGTTCAGGAGCTGATAGAAAAAG-CAAGACACTT--ATCAAACCAGCATGCATA
ATGCATTGGGTGTGTATTG---TAGTTGTCTTGTTCAAGACGGACC----------------------------------
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-------------------------------CAGTGTTCAGGACGTTTTTACTTGTATGAACAGTGGTTTTATCGGTGCG
TTCATTGGGGTTTACAAGAAGTCCCACTCAGCCAGGCCTGGACATTTGCTGTTCCAGACGTTTTACCAGAAAATATATTC
CTTGGGCTTGGTACAATTGTGCTTGATCTGAGGCCAGCTCCACATCTGTTTAAATCTGTACCCATATCCTGACCTGAAGT
ATGTGCAGATACTGTTTTTTTTAATTAATCCTGTACCCCAGCCCTAAGATTCTAATAATAATTGTCTCATTTGTCAATCA
ATTGCAAGCATATGGCTTCTCATGTGGTCATGTGGAGCTTTACATATTTAAGTTTAAATGGCACCGAGGCACAGCAATGC
ATGTGTTCTTCCTTTGTTTGAGAAAAAGCGTCTAATTTGATGAGGAAAAAAAATAGCCTATTAAGAACAGAAACGGTTCA
GTGCAATGTACTCTTCAGAACAGAAACGGTGCATGTTTGATTTCACTTACCATTTTCCTTGGACCCTCGCATAGATTTTA
TGTTTGGAAAATAGCCTATTAAGATTAAACTATCATTGTTTCACCGCAGGGCTGCAACATTGTTCTTCTTGAAAAGTTCC
AGACTAAACTGTACGTGTACTGGTAGGTTATTTATATGTTAAGCTGCATTTTCCTTAATACTATTACTCACAATGTTGCA
TATCTGCATTGCCAAACCTCTATATTCGATTAACAGATTTCCTGGTACGCCGGACTTTGGAATGCCGCATGATTAATTCC
ACATTGGAACGCTGAGCATGTGAACTTCAGCTTCTTAGTATTTTCTCAACCTGGTCATATATACTTTATACTACCTATGT
TAGCAAACTCTCATTTTTGAATGGTTATTAGTGCTGCTCTACGGAAATAATAGGTTGGTGCTGCAATAGGCTTTCAGATT
ATGTCCTTATTTGTCTAATATATGCTAGAAAGAAGGAATTTTCTGAAGAATGCTTGAAATGCAGAGTTCAGCAAACAAAT
GACAATTATTTGTCCCCTTGGGAAGCTCTCACACAATCGGGCAACTCGATCTCTACGACGCCAAAAGAAC----------
----ATCATTTATTGAGGATCTGCGTCACACAGAGGATCAGACTCATAGGGTTACCCAGCCAAAAAACTCTGATGAAGTA
TGAGTATTGCTTCGTCAGTGTGGTAAGCAAAGATGAGAGTATTGGCTCATCAGTGTAGGATCTGTTTCTCTATAAACTTG
GTCAAACATAGTAATTCTTGTCGACGAGGATTTCTAAAGGTCAAACATAGTAATCTTTGACCAAGTTTATCGAGAAAATC
ATTTATATCTACAATACCAAGCATATACAAACAGTACGAAAATATACCTTATGATGTATCTATTGATATACACACTTGGT
ATTCTAAAATTCTAATGAATCAATCTCAAAGGCCACCACAGCAGAACACAATTAAGTTGGCAT-----------------
---------------------------------------------CACTGCTATGTACTCCCTCTGTTCCATAATTCTTG
TTGTGGTTTTAGTTAGATTATGGAACAGATGGAGTACAAGGTTCTGCTCTCTGTAGTGTTACAGTTTATACTGGAGGATT
AGAGCTAATTAACTAACGGTGCCTCTCTGAAAGAAGGCTAGACACGGTGTTGTTGATGGTATATTTCTGTTTCCCTCTCC
TCTCAGTTGCACTAATTTCAACCACACGGCCAACATACAGTTTCCTATTTAGCACTTGACGGTTGGGGAAGTACAACCAC
GATCTTTGTGAGCTCATACTGATATGATATGATATGATATGAATATGATTCTTG--------------------------
------------------------CAGTACCAAACGATGCCATCTATACTTGTTATATTTCTAA----------------
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>chr6B_1362
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------------------------------------------------------TTGGTGCTGTAATAGGCTTTCAGATT
ATGTCCTTATTTGTTGAATATATGCTAGAAAGGACT--TTTTCTGAAGAATGCTTGAAAGGCAGAGTTCAGCAAACAA--
----ATTATTTGTCCCCTTAGGAAGCTCTCACACAATCGGGCAACTCGATCTCTACGACGCCAAAAGAACCTACAGATTG
TTTCATCATTTATTGAGGATCTGCGTCACACAGAGGATCAGACTGATAGGGTTACCCAGCCAAAAAATTCTCATGTAGTA
TAAGTATTGCCTCGTCAGTGTGGTAAGCAGAGATGATG------------------------------------------
----------GTAATTCTTGTCGACGAGGATTTCTAAAGGTCAAACATAGTAATCTTTGACCAAGTTTATAGAGAAAATC
ATTTATATCTGCATTAAGAAGCATAT----ACAGTATGAAAATATATCTCATGATGTATCTATTGATAT--ACACTTGGT
ATTCTAAAATTCTAATGAGTCAATCTCAAGGGCCACCACAGCAGAACACAATTTAGTTGGAATATACCTAATGCAGCAGG
AGAGCAA---CACTGACCAGTCTAGCTTGAA-------------------------------------------------
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>SNPs
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-------------------------S------------S-----------------------------------------
-----------------------------------------------------------------------------S--
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------S-------------------------------------------------------------------------
---------------SSS--------------------------------------------------------------
------------------S-S-----------------------------------------------------------
----------------------------------------------SS--------------------------------
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-----------------------------------S--------------------------------------------
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-------------------------------------S-------S------S-S-------------------------
-------SSSSSSSSSS-------------------S---S--------------------------------S------
------SS------------------------------------------------------------------------
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-----------S--------------------------------------------------------------------
-------------------SSS---------S-----------S------------------------------------
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--------------------------------------S-----------------------------------------
---------S-----------S-------------------------------------------S--------------
----------------S---S------S---------------------S------------------------------
-SS-SS-SS-SSSSSSS-S--S----------------------------------------------------------
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------------------S------------------------------------S-SS-------------------S-
S-S---------S-----------S-----S---------S---------------------------------------
------------S----S-------------S------------------------------------------------
-------------------S-----S-------------------S-------------------------S--------
---------------------S-----------------------S----------------------------------
----------------------------------------S---------------------------------------
------SSSS---------------------SSSSSSSSSSSSSS----S-------S------S-----------S--S
-S------------SS----------------------------------------------------S-----S-----
--------S----------------------S------------------S-----S-----S--------------S--
----------------------------------S---------S-------------------S----------SS--S
------------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS---------S--S--------S------------------SSSSSSSSSSSSSSSS
SSSSSSSS
>forward_238
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----------------------------------------------------------TTAGGGCGAACAGAAACCGA--
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>reverse_2101
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--------------------ACTTGATGTGAGGCCAGCTC----------------------------------------
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>forward_2010
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----------------------------------------------------------------------TATTGGTGCG
TTCATTGGGC----------------------------------------------------------------------
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>reverse_3632
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-------------------------------GGAAGGCTAGACACGGTGTC-----------------------------
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