Multiple sequence alignment - TraesCS5D01G343300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G343300 chr5D 100.000 2720 0 0 1 2720 431253543 431250824 0.000000e+00 5024.0
1 TraesCS5D01G343300 chr5D 85.240 271 31 7 1356 1623 431402109 431401845 1.240000e-68 270.0
2 TraesCS5D01G343300 chr5D 89.764 127 12 1 1054 1180 483113201 483113326 7.790000e-36 161.0
3 TraesCS5D01G343300 chr5B 92.076 1262 78 9 549 1795 520971331 520970077 0.000000e+00 1757.0
4 TraesCS5D01G343300 chr5B 93.311 299 19 1 1947 2245 520969918 520969621 8.940000e-120 440.0
5 TraesCS5D01G343300 chr5B 85.852 311 35 7 1316 1623 521032338 521032034 3.380000e-84 322.0
6 TraesCS5D01G343300 chr5B 88.571 140 12 3 147 282 520971829 520971690 1.680000e-37 167.0
7 TraesCS5D01G343300 chr5B 81.696 224 15 14 326 548 520971612 520971414 2.170000e-36 163.0
8 TraesCS5D01G343300 chr5B 94.253 87 5 0 1 87 520972057 520971971 1.700000e-27 134.0
9 TraesCS5D01G343300 chr5A 89.349 1305 97 20 524 1795 546565031 546563736 0.000000e+00 1602.0
10 TraesCS5D01G343300 chr5A 88.277 563 55 7 1938 2491 546563675 546563115 0.000000e+00 664.0
11 TraesCS5D01G343300 chr5A 84.098 327 42 8 1300 1623 546576363 546576044 9.460000e-80 307.0
12 TraesCS5D01G343300 chr5A 92.857 140 10 0 3 142 546565675 546565536 1.280000e-48 204.0
13 TraesCS5D01G343300 chr5A 86.550 171 12 5 320 487 546565262 546565100 7.740000e-41 178.0
14 TraesCS5D01G343300 chr3B 82.618 466 60 13 1891 2342 64536617 64537075 2.540000e-105 392.0
15 TraesCS5D01G343300 chr3B 91.093 247 16 2 2480 2720 81531974 81532220 2.020000e-86 329.0
16 TraesCS5D01G343300 chr3B 88.060 67 6 2 1829 1894 341965915 341965850 8.070000e-11 78.7
17 TraesCS5D01G343300 chr3B 88.710 62 6 1 1832 1893 644817050 644817110 1.040000e-09 75.0
18 TraesCS5D01G343300 chr1D 93.913 230 14 0 2491 2720 246951564 246951335 5.570000e-92 348.0
19 TraesCS5D01G343300 chr1D 95.392 217 9 1 2504 2720 481493445 481493660 7.210000e-91 344.0
20 TraesCS5D01G343300 chr3D 93.506 231 14 1 2491 2720 541408632 541408402 2.590000e-90 342.0
21 TraesCS5D01G343300 chr3D 77.215 158 24 8 1891 2037 269941513 269941357 6.240000e-12 82.4
22 TraesCS5D01G343300 chr2B 93.103 232 16 0 2489 2720 747814286 747814055 9.330000e-90 340.0
23 TraesCS5D01G343300 chr2B 76.923 169 33 6 2194 2359 773172943 773172778 1.040000e-14 91.6
24 TraesCS5D01G343300 chr2B 100.000 28 0 0 2194 2221 737487033 737487060 5.000000e-03 52.8
25 TraesCS5D01G343300 chr6A 93.421 228 14 1 2493 2720 54514713 54514487 1.210000e-88 337.0
26 TraesCS5D01G343300 chr4D 93.043 230 16 0 2491 2720 31017583 31017812 1.210000e-88 337.0
27 TraesCS5D01G343300 chr4D 91.667 132 10 1 1051 1182 508529746 508529616 5.980000e-42 182.0
28 TraesCS5D01G343300 chr4D 90.000 50 4 1 1829 1877 111981671 111981622 2.260000e-06 63.9
29 TraesCS5D01G343300 chr4A 92.609 230 17 0 2491 2720 603735807 603736036 5.610000e-87 331.0
30 TraesCS5D01G343300 chr4A 91.111 45 4 0 1833 1877 429228522 429228478 8.130000e-06 62.1
31 TraesCS5D01G343300 chr2D 92.609 230 17 0 2491 2720 649514882 649514653 5.610000e-87 331.0
32 TraesCS5D01G343300 chr7D 89.231 130 13 1 1053 1182 63398423 63398551 7.790000e-36 161.0
33 TraesCS5D01G343300 chr7D 77.483 151 29 5 2194 2341 30285519 30285667 4.830000e-13 86.1
34 TraesCS5D01G343300 chr7B 89.231 130 13 1 1053 1182 3721703 3721831 7.790000e-36 161.0
35 TraesCS5D01G343300 chr7B 80.380 158 19 8 1891 2037 420036094 420036250 2.860000e-20 110.0
36 TraesCS5D01G343300 chr7A 88.462 130 14 1 1053 1182 66173988 66174116 3.630000e-34 156.0
37 TraesCS5D01G343300 chr7A 79.885 174 27 8 2187 2356 30675163 30675332 1.320000e-23 121.0
38 TraesCS5D01G343300 chr7A 79.167 96 17 3 2145 2240 121391395 121391303 2.260000e-06 63.9
39 TraesCS5D01G343300 chr7A 83.607 61 10 0 385 445 594553426 594553366 1.050000e-04 58.4
40 TraesCS5D01G343300 chr3A 86.170 94 8 3 1805 1894 406720 406628 2.230000e-16 97.1
41 TraesCS5D01G343300 chr2A 85.507 69 8 2 1829 1896 55936414 55936347 1.350000e-08 71.3
42 TraesCS5D01G343300 chr2A 85.484 62 8 1 1832 1893 768997492 768997432 2.260000e-06 63.9
43 TraesCS5D01G343300 chrUn 97.222 36 0 1 1829 1863 48653958 48653993 2.920000e-05 60.2
44 TraesCS5D01G343300 chrUn 97.222 36 0 1 1829 1863 185214234 185214269 2.920000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G343300 chr5D 431250824 431253543 2719 True 5024.0 5024 100.00000 1 2720 1 chr5D.!!$R1 2719
1 TraesCS5D01G343300 chr5B 520969621 520972057 2436 True 532.2 1757 89.98140 1 2245 5 chr5B.!!$R2 2244
2 TraesCS5D01G343300 chr5A 546563115 546565675 2560 True 662.0 1602 89.25825 3 2491 4 chr5A.!!$R2 2488

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
572 865 0.108329 CGTTTGGTCGCAGGTCCTAT 60.108 55.0 0.0 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2467 2905 0.106708 TGCATCGATTAGGAGCCACC 59.893 55.0 0.0 0.0 39.35 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 0.321671 GAGTCAGGGCACACAGCTTA 59.678 55.000 0.00 0.00 44.79 3.09
71 72 2.498481 AGGGCACACAGCTTATAACGTA 59.502 45.455 0.00 0.00 44.79 3.57
115 168 3.181487 GGGCACATGGCTTATAACTTGTG 60.181 47.826 13.50 13.50 44.01 3.33
120 173 6.128007 GCACATGGCTTATAACTTGTGTAAGT 60.128 38.462 16.67 0.00 43.62 2.24
142 195 1.210478 GAGTGGTATGTCAGGGCACAT 59.790 52.381 0.00 0.00 40.28 3.21
144 197 1.065491 GTGGTATGTCAGGGCACATGA 60.065 52.381 0.00 0.00 37.57 3.07
156 239 2.034879 CACATGACCCACTGCCGTC 61.035 63.158 0.00 0.00 0.00 4.79
157 240 2.436646 CATGACCCACTGCCGTCC 60.437 66.667 0.00 0.00 0.00 4.79
164 247 1.003355 CCACTGCCGTCCTTGACAT 60.003 57.895 0.00 0.00 32.09 3.06
168 251 1.915614 CTGCCGTCCTTGACATGTGC 61.916 60.000 1.15 0.00 32.09 4.57
183 266 3.980698 ACATGTGCCATATACCCTTACCT 59.019 43.478 0.00 0.00 0.00 3.08
190 273 6.042897 GTGCCATATACCCTTACCTAGAACTT 59.957 42.308 0.00 0.00 0.00 2.66
235 318 5.362263 TGTTTATATACCGAGTGCCCTTTC 58.638 41.667 0.00 0.00 0.00 2.62
301 396 2.409870 CCGAGGCCTCCATGTTTGC 61.410 63.158 27.20 0.00 0.00 3.68
315 411 3.305398 TGTTTGCCGTGTGTTCTTTTT 57.695 38.095 0.00 0.00 0.00 1.94
316 412 2.989840 TGTTTGCCGTGTGTTCTTTTTG 59.010 40.909 0.00 0.00 0.00 2.44
351 475 2.535012 TGCACTCGGTTTACACATGA 57.465 45.000 0.00 0.00 0.00 3.07
360 484 2.414138 GGTTTACACATGACTACACGGC 59.586 50.000 0.00 0.00 0.00 5.68
363 487 2.248280 ACACATGACTACACGGCAAA 57.752 45.000 0.00 0.00 0.00 3.68
364 488 1.871039 ACACATGACTACACGGCAAAC 59.129 47.619 0.00 0.00 0.00 2.93
365 489 1.870402 CACATGACTACACGGCAAACA 59.130 47.619 0.00 0.00 0.00 2.83
376 500 3.181482 ACACGGCAAACACATGATTTTCA 60.181 39.130 0.00 0.00 0.00 2.69
415 540 9.642327 TTGCAAATGATTGACATAATATATGCC 57.358 29.630 0.00 0.00 38.94 4.40
423 548 8.938801 ATTGACATAATATATGCCCAAGACAA 57.061 30.769 9.82 0.00 0.00 3.18
429 554 2.036958 TATGCCCAAGACAATGGACG 57.963 50.000 0.00 0.00 43.54 4.79
440 565 4.287552 AGACAATGGACGAGTATACCCTT 58.712 43.478 0.00 0.00 0.00 3.95
441 566 4.099573 AGACAATGGACGAGTATACCCTTG 59.900 45.833 0.00 0.00 36.13 3.61
442 567 3.134081 ACAATGGACGAGTATACCCTTGG 59.866 47.826 0.00 0.00 35.00 3.61
443 568 2.832643 TGGACGAGTATACCCTTGGA 57.167 50.000 0.00 0.00 0.00 3.53
444 569 2.381911 TGGACGAGTATACCCTTGGAC 58.618 52.381 0.00 0.00 0.00 4.02
445 570 1.685517 GGACGAGTATACCCTTGGACC 59.314 57.143 0.00 0.00 0.00 4.46
446 571 2.664015 GACGAGTATACCCTTGGACCT 58.336 52.381 0.00 0.00 0.00 3.85
499 708 7.966204 ACTATGATGGTTTTGCGTAATTACAAC 59.034 33.333 15.67 11.20 0.00 3.32
500 709 6.073327 TGATGGTTTTGCGTAATTACAACA 57.927 33.333 15.67 9.87 0.00 3.33
501 710 6.682746 TGATGGTTTTGCGTAATTACAACAT 58.317 32.000 15.67 9.37 0.00 2.71
502 711 6.804295 TGATGGTTTTGCGTAATTACAACATC 59.196 34.615 17.70 17.70 32.05 3.06
503 712 5.462405 TGGTTTTGCGTAATTACAACATCC 58.538 37.500 15.67 13.75 0.00 3.51
504 713 5.009710 TGGTTTTGCGTAATTACAACATCCA 59.990 36.000 15.67 15.54 0.00 3.41
505 714 5.343860 GGTTTTGCGTAATTACAACATCCAC 59.656 40.000 15.67 9.10 0.00 4.02
506 715 5.690997 TTTGCGTAATTACAACATCCACA 57.309 34.783 15.67 0.00 0.00 4.17
507 716 5.888691 TTGCGTAATTACAACATCCACAT 57.111 34.783 15.67 0.00 0.00 3.21
508 717 5.228579 TGCGTAATTACAACATCCACATG 57.771 39.130 15.67 0.00 35.92 3.21
509 718 4.035017 GCGTAATTACAACATCCACATGC 58.965 43.478 15.67 2.70 32.57 4.06
510 719 4.438065 GCGTAATTACAACATCCACATGCA 60.438 41.667 15.67 0.00 32.57 3.96
511 720 5.265477 CGTAATTACAACATCCACATGCAG 58.735 41.667 15.67 0.00 32.57 4.41
512 721 5.163764 CGTAATTACAACATCCACATGCAGT 60.164 40.000 15.67 0.00 32.57 4.40
559 852 6.095160 AGTTCTCTAGTACTATGGACGTTTGG 59.905 42.308 2.33 0.00 0.00 3.28
572 865 0.108329 CGTTTGGTCGCAGGTCCTAT 60.108 55.000 0.00 0.00 0.00 2.57
587 880 2.031857 GTCCTATAGAGACGCGTCCTTG 60.032 54.545 34.08 20.69 0.00 3.61
599 896 2.096417 CGCGTCCTTGTAAGTTTTCCTG 60.096 50.000 0.00 0.00 0.00 3.86
836 1145 1.279496 CTCCTTGGACTGGTGGATGA 58.721 55.000 0.00 0.00 0.00 2.92
936 1245 4.200283 CGCTGCCTCGTCCTCCTC 62.200 72.222 0.00 0.00 0.00 3.71
937 1246 3.844090 GCTGCCTCGTCCTCCTCC 61.844 72.222 0.00 0.00 0.00 4.30
938 1247 3.151022 CTGCCTCGTCCTCCTCCC 61.151 72.222 0.00 0.00 0.00 4.30
973 1282 0.838608 TTTCCCTTGGTACGTGTGGT 59.161 50.000 0.00 0.00 0.00 4.16
1227 1558 0.538746 TGTCCAGGACTGCTACGACA 60.539 55.000 20.82 5.43 33.15 4.35
1231 1562 0.867753 CAGGACTGCTACGACATCGC 60.868 60.000 0.14 0.00 44.43 4.58
1488 1822 2.997315 CTCTGGTCCGAGGTGGCA 60.997 66.667 3.57 0.00 37.80 4.92
1683 2020 1.374758 GAGCCTGGACAAGACACCG 60.375 63.158 0.00 0.00 0.00 4.94
1774 2120 8.739039 CAGATGGTCAAATTACAACCAAAGATA 58.261 33.333 9.73 0.00 45.65 1.98
1788 2134 9.005777 ACAACCAAAGATAATACATAACGTTGT 57.994 29.630 11.99 4.35 35.40 3.32
1796 2142 9.865321 AGATAATACATAACGTTGTTGTGTACT 57.135 29.630 21.87 11.83 30.73 2.73
1798 2144 7.949903 AATACATAACGTTGTTGTGTACTCA 57.050 32.000 21.87 7.44 30.73 3.41
1799 2145 8.542497 AATACATAACGTTGTTGTGTACTCAT 57.458 30.769 21.87 8.96 30.73 2.90
1801 2147 6.884187 ACATAACGTTGTTGTGTACTCATTC 58.116 36.000 11.99 0.00 0.00 2.67
1803 2149 7.868922 ACATAACGTTGTTGTGTACTCATTCTA 59.131 33.333 11.99 0.00 0.00 2.10
1804 2150 8.869897 CATAACGTTGTTGTGTACTCATTCTAT 58.130 33.333 11.99 0.00 0.00 1.98
1805 2151 6.946229 ACGTTGTTGTGTACTCATTCTATC 57.054 37.500 0.00 0.00 0.00 2.08
1806 2152 5.867716 ACGTTGTTGTGTACTCATTCTATCC 59.132 40.000 0.00 0.00 0.00 2.59
1807 2153 5.867174 CGTTGTTGTGTACTCATTCTATCCA 59.133 40.000 0.00 0.00 0.00 3.41
1808 2154 6.367695 CGTTGTTGTGTACTCATTCTATCCAA 59.632 38.462 0.00 0.00 0.00 3.53
1809 2155 7.095397 CGTTGTTGTGTACTCATTCTATCCAAA 60.095 37.037 0.00 0.00 0.00 3.28
1810 2156 8.564574 GTTGTTGTGTACTCATTCTATCCAAAA 58.435 33.333 0.00 0.00 0.00 2.44
1811 2157 8.684386 TGTTGTGTACTCATTCTATCCAAAAA 57.316 30.769 0.00 0.00 0.00 1.94
1832 2178 6.484364 AAAAGATTGTCCCTCAATTGTTGT 57.516 33.333 5.13 0.00 45.49 3.32
1833 2179 5.458041 AAGATTGTCCCTCAATTGTTGTG 57.542 39.130 5.13 0.00 45.49 3.33
1834 2180 3.256631 AGATTGTCCCTCAATTGTTGTGC 59.743 43.478 5.13 0.00 45.49 4.57
1835 2181 2.363306 TGTCCCTCAATTGTTGTGCT 57.637 45.000 5.13 0.00 0.00 4.40
1836 2182 3.500448 TGTCCCTCAATTGTTGTGCTA 57.500 42.857 5.13 0.00 0.00 3.49
1837 2183 3.411446 TGTCCCTCAATTGTTGTGCTAG 58.589 45.455 5.13 0.00 0.00 3.42
1838 2184 3.072330 TGTCCCTCAATTGTTGTGCTAGA 59.928 43.478 5.13 0.00 0.00 2.43
1839 2185 4.263462 TGTCCCTCAATTGTTGTGCTAGAT 60.263 41.667 5.13 0.00 0.00 1.98
1840 2186 5.045942 TGTCCCTCAATTGTTGTGCTAGATA 60.046 40.000 5.13 0.00 0.00 1.98
1841 2187 5.294552 GTCCCTCAATTGTTGTGCTAGATAC 59.705 44.000 5.13 0.00 0.00 2.24
1842 2188 5.045942 TCCCTCAATTGTTGTGCTAGATACA 60.046 40.000 5.13 0.00 0.00 2.29
1843 2189 5.824624 CCCTCAATTGTTGTGCTAGATACAT 59.175 40.000 5.13 0.00 0.00 2.29
1844 2190 6.017605 CCCTCAATTGTTGTGCTAGATACATC 60.018 42.308 5.13 0.00 0.00 3.06
1845 2191 6.017605 CCTCAATTGTTGTGCTAGATACATCC 60.018 42.308 5.13 0.00 0.00 3.51
1846 2192 6.413892 TCAATTGTTGTGCTAGATACATCCA 58.586 36.000 5.13 0.00 0.00 3.41
1847 2193 7.056006 TCAATTGTTGTGCTAGATACATCCAT 58.944 34.615 5.13 0.00 0.00 3.41
1848 2194 7.557358 TCAATTGTTGTGCTAGATACATCCATT 59.443 33.333 5.13 0.00 0.00 3.16
1849 2195 7.886629 ATTGTTGTGCTAGATACATCCATTT 57.113 32.000 0.00 0.00 0.00 2.32
1850 2196 8.978874 ATTGTTGTGCTAGATACATCCATTTA 57.021 30.769 0.00 0.00 0.00 1.40
1851 2197 8.800370 TTGTTGTGCTAGATACATCCATTTAA 57.200 30.769 0.00 0.00 0.00 1.52
1852 2198 8.437360 TGTTGTGCTAGATACATCCATTTAAG 57.563 34.615 0.00 0.00 0.00 1.85
1853 2199 8.264347 TGTTGTGCTAGATACATCCATTTAAGA 58.736 33.333 0.00 0.00 0.00 2.10
1854 2200 8.768955 GTTGTGCTAGATACATCCATTTAAGAG 58.231 37.037 0.00 0.00 0.00 2.85
1855 2201 8.250143 TGTGCTAGATACATCCATTTAAGAGA 57.750 34.615 0.00 0.00 0.00 3.10
1856 2202 8.144478 TGTGCTAGATACATCCATTTAAGAGAC 58.856 37.037 0.00 0.00 0.00 3.36
1857 2203 8.144478 GTGCTAGATACATCCATTTAAGAGACA 58.856 37.037 0.00 0.00 0.00 3.41
1858 2204 8.704668 TGCTAGATACATCCATTTAAGAGACAA 58.295 33.333 0.00 0.00 0.00 3.18
1859 2205 9.202273 GCTAGATACATCCATTTAAGAGACAAG 57.798 37.037 0.00 0.00 0.00 3.16
1860 2206 9.202273 CTAGATACATCCATTTAAGAGACAAGC 57.798 37.037 0.00 0.00 0.00 4.01
1861 2207 7.800092 AGATACATCCATTTAAGAGACAAGCT 58.200 34.615 0.00 0.00 0.00 3.74
1862 2208 8.270744 AGATACATCCATTTAAGAGACAAGCTT 58.729 33.333 0.00 0.00 0.00 3.74
1863 2209 6.506500 ACATCCATTTAAGAGACAAGCTTG 57.493 37.500 24.84 24.84 0.00 4.01
1864 2210 6.240894 ACATCCATTTAAGAGACAAGCTTGA 58.759 36.000 32.50 8.10 0.00 3.02
1865 2211 6.716628 ACATCCATTTAAGAGACAAGCTTGAA 59.283 34.615 32.50 14.63 0.00 2.69
1866 2212 7.231317 ACATCCATTTAAGAGACAAGCTTGAAA 59.769 33.333 32.50 20.09 0.00 2.69
1867 2213 6.970484 TCCATTTAAGAGACAAGCTTGAAAC 58.030 36.000 32.50 20.78 0.00 2.78
1868 2214 6.545666 TCCATTTAAGAGACAAGCTTGAAACA 59.454 34.615 32.50 9.46 0.00 2.83
1869 2215 7.068103 TCCATTTAAGAGACAAGCTTGAAACAA 59.932 33.333 32.50 14.48 0.00 2.83
1870 2216 7.380602 CCATTTAAGAGACAAGCTTGAAACAAG 59.619 37.037 32.50 13.42 0.00 3.16
1871 2217 7.391148 TTTAAGAGACAAGCTTGAAACAAGT 57.609 32.000 32.50 8.41 0.00 3.16
1872 2218 5.904362 AAGAGACAAGCTTGAAACAAGTT 57.096 34.783 32.50 7.60 0.00 2.66
1873 2219 5.904362 AGAGACAAGCTTGAAACAAGTTT 57.096 34.783 32.50 6.80 35.14 2.66
1874 2220 6.272822 AGAGACAAGCTTGAAACAAGTTTT 57.727 33.333 32.50 5.99 32.11 2.43
1875 2221 6.691508 AGAGACAAGCTTGAAACAAGTTTTT 58.308 32.000 32.50 5.43 32.11 1.94
1906 2252 9.134055 GACAGAGGGAGTATTAGTTATAACAGT 57.866 37.037 17.65 5.66 0.00 3.55
1907 2253 9.134055 ACAGAGGGAGTATTAGTTATAACAGTC 57.866 37.037 17.65 8.75 0.00 3.51
1912 2258 9.408069 GGGAGTATTAGTTATAACAGTCGAATG 57.592 37.037 17.65 11.98 0.00 2.67
1981 2410 4.833390 AGTGTATTTTGGCTAGGTGTCTC 58.167 43.478 0.00 0.00 0.00 3.36
2014 2443 9.499479 CTATCTCAAAGCTAATGTACAATCCAT 57.501 33.333 0.00 0.00 0.00 3.41
2084 2514 8.090214 AGTAAAAATGAATGACTGGTTTGGATG 58.910 33.333 0.00 0.00 0.00 3.51
2085 2515 5.410355 AAATGAATGACTGGTTTGGATGG 57.590 39.130 0.00 0.00 0.00 3.51
2179 2609 2.814805 ATGTCCACATGGCTTAAGCT 57.185 45.000 25.88 5.35 41.70 3.74
2192 2625 5.509498 TGGCTTAAGCTCAACCATAGAATT 58.491 37.500 25.88 0.00 41.70 2.17
2226 2659 2.821378 CACATGGCAGAATCTGGTGAAA 59.179 45.455 12.66 0.00 31.21 2.69
2228 2661 3.446161 ACATGGCAGAATCTGGTGAAATG 59.554 43.478 12.66 0.00 31.21 2.32
2248 2681 4.115401 TGATGAGAAGATCCAACAGTCG 57.885 45.455 0.00 0.00 0.00 4.18
2249 2682 3.118992 TGATGAGAAGATCCAACAGTCGG 60.119 47.826 0.00 0.00 0.00 4.79
2258 2691 1.336440 TCCAACAGTCGGCAACAATTG 59.664 47.619 3.24 3.24 0.00 2.32
2277 2710 1.346395 TGGATTTGCCACGTCACTACT 59.654 47.619 0.00 0.00 43.33 2.57
2279 2712 2.413837 GATTTGCCACGTCACTACTGT 58.586 47.619 0.00 0.00 0.00 3.55
2280 2713 1.577468 TTTGCCACGTCACTACTGTG 58.423 50.000 0.00 0.00 45.07 3.66
2286 2719 1.544246 CACGTCACTACTGTGGGATCA 59.456 52.381 0.00 0.00 43.94 2.92
2299 2732 2.614057 GTGGGATCAGCTTAATCCAACG 59.386 50.000 21.16 0.00 43.85 4.10
2300 2733 2.222027 GGGATCAGCTTAATCCAACGG 58.778 52.381 21.16 0.00 43.85 4.44
2303 2736 2.851263 TCAGCTTAATCCAACGGTGT 57.149 45.000 0.00 0.00 0.00 4.16
2319 2752 7.228906 TCCAACGGTGTTATTCAAAGTTATTCA 59.771 33.333 0.00 0.00 0.00 2.57
2416 2854 6.024552 TGTTCTATGCCCAAAAACTTCATC 57.975 37.500 0.00 0.00 0.00 2.92
2417 2855 5.774690 TGTTCTATGCCCAAAAACTTCATCT 59.225 36.000 0.00 0.00 0.00 2.90
2420 2858 9.120538 GTTCTATGCCCAAAAACTTCATCTATA 57.879 33.333 0.00 0.00 0.00 1.31
2425 2863 7.087639 TGCCCAAAAACTTCATCTATAAAACG 58.912 34.615 0.00 0.00 0.00 3.60
2434 2872 9.924650 AACTTCATCTATAAAACGTACTCAAGT 57.075 29.630 0.00 0.00 0.00 3.16
2456 2894 5.613116 AGTTTTAAATCCCCAAAAATCCCCA 59.387 36.000 0.00 0.00 0.00 4.96
2457 2895 6.103353 AGTTTTAAATCCCCAAAAATCCCCAA 59.897 34.615 0.00 0.00 0.00 4.12
2459 2897 7.830848 TTTAAATCCCCAAAAATCCCCAATA 57.169 32.000 0.00 0.00 0.00 1.90
2491 2929 2.289002 GGCTCCTAATCGATGCACAAAG 59.711 50.000 0.00 0.00 0.00 2.77
2492 2930 2.289002 GCTCCTAATCGATGCACAAAGG 59.711 50.000 0.00 0.00 0.00 3.11
2493 2931 2.874701 CTCCTAATCGATGCACAAAGGG 59.125 50.000 0.00 0.00 0.00 3.95
2494 2932 1.334869 CCTAATCGATGCACAAAGGGC 59.665 52.381 0.00 0.00 0.00 5.19
2495 2933 1.003545 CTAATCGATGCACAAAGGGCG 60.004 52.381 0.00 0.00 0.00 6.13
2496 2934 2.270297 AATCGATGCACAAAGGGCGC 62.270 55.000 0.00 0.00 0.00 6.53
2497 2935 4.817063 CGATGCACAAAGGGCGCG 62.817 66.667 0.00 0.00 0.00 6.86
2498 2936 3.737172 GATGCACAAAGGGCGCGT 61.737 61.111 8.43 0.00 0.00 6.01
2499 2937 3.267597 GATGCACAAAGGGCGCGTT 62.268 57.895 8.43 0.00 0.00 4.84
2500 2938 2.747507 GATGCACAAAGGGCGCGTTT 62.748 55.000 8.43 0.02 0.00 3.60
2501 2939 3.029735 GCACAAAGGGCGCGTTTG 61.030 61.111 24.49 24.49 42.53 2.93
2502 2940 2.354539 CACAAAGGGCGCGTTTGG 60.355 61.111 27.62 17.40 41.58 3.28
2503 2941 2.831284 ACAAAGGGCGCGTTTGGT 60.831 55.556 27.62 15.22 41.58 3.67
2504 2942 2.415426 CAAAGGGCGCGTTTGGTT 59.585 55.556 20.56 0.00 36.14 3.67
2505 2943 1.948635 CAAAGGGCGCGTTTGGTTG 60.949 57.895 20.56 7.86 36.14 3.77
2506 2944 3.783478 AAAGGGCGCGTTTGGTTGC 62.783 57.895 8.43 0.00 0.00 4.17
2512 2950 4.676586 GCGTTTGGTTGCCGTCGG 62.677 66.667 6.99 6.99 0.00 4.79
2522 2960 2.103736 GCCGTCGGCTACAGTACC 59.896 66.667 28.98 0.00 46.69 3.34
2523 2961 2.413142 GCCGTCGGCTACAGTACCT 61.413 63.158 28.98 0.00 46.69 3.08
2524 2962 1.432251 CCGTCGGCTACAGTACCTG 59.568 63.158 0.00 0.00 37.52 4.00
2525 2963 1.226603 CGTCGGCTACAGTACCTGC 60.227 63.158 0.00 0.00 34.37 4.85
2526 2964 1.226603 GTCGGCTACAGTACCTGCG 60.227 63.158 0.00 0.00 34.37 5.18
2527 2965 1.676635 TCGGCTACAGTACCTGCGT 60.677 57.895 0.00 0.00 34.37 5.24
2528 2966 1.214589 CGGCTACAGTACCTGCGTT 59.785 57.895 0.00 0.00 34.37 4.84
2529 2967 1.076533 CGGCTACAGTACCTGCGTTG 61.077 60.000 0.00 0.00 34.37 4.10
2530 2968 1.359459 GGCTACAGTACCTGCGTTGC 61.359 60.000 0.00 0.00 34.37 4.17
2531 2969 0.669318 GCTACAGTACCTGCGTTGCA 60.669 55.000 0.00 0.00 34.37 4.08
2532 2970 2.007049 GCTACAGTACCTGCGTTGCAT 61.007 52.381 0.00 0.00 38.13 3.96
2533 2971 2.737359 GCTACAGTACCTGCGTTGCATA 60.737 50.000 0.00 0.00 38.13 3.14
2534 2972 1.722011 ACAGTACCTGCGTTGCATAC 58.278 50.000 0.00 0.00 38.13 2.39
2535 2973 1.006832 CAGTACCTGCGTTGCATACC 58.993 55.000 0.00 0.00 38.13 2.73
2536 2974 0.107848 AGTACCTGCGTTGCATACCC 60.108 55.000 0.00 0.00 38.13 3.69
2537 2975 0.107848 GTACCTGCGTTGCATACCCT 60.108 55.000 0.00 0.00 38.13 4.34
2538 2976 0.616371 TACCTGCGTTGCATACCCTT 59.384 50.000 0.00 0.00 38.13 3.95
2539 2977 0.676782 ACCTGCGTTGCATACCCTTC 60.677 55.000 0.00 0.00 38.13 3.46
2540 2978 0.392998 CCTGCGTTGCATACCCTTCT 60.393 55.000 0.00 0.00 38.13 2.85
2541 2979 1.009829 CTGCGTTGCATACCCTTCTC 58.990 55.000 0.00 0.00 38.13 2.87
2542 2980 0.392461 TGCGTTGCATACCCTTCTCC 60.392 55.000 0.00 0.00 31.71 3.71
2543 2981 0.392461 GCGTTGCATACCCTTCTCCA 60.392 55.000 0.00 0.00 0.00 3.86
2544 2982 1.369625 CGTTGCATACCCTTCTCCAC 58.630 55.000 0.00 0.00 0.00 4.02
2545 2983 1.066143 CGTTGCATACCCTTCTCCACT 60.066 52.381 0.00 0.00 0.00 4.00
2546 2984 2.633488 GTTGCATACCCTTCTCCACTC 58.367 52.381 0.00 0.00 0.00 3.51
2547 2985 1.951209 TGCATACCCTTCTCCACTCA 58.049 50.000 0.00 0.00 0.00 3.41
2548 2986 1.833630 TGCATACCCTTCTCCACTCAG 59.166 52.381 0.00 0.00 0.00 3.35
2549 2987 1.474143 GCATACCCTTCTCCACTCAGC 60.474 57.143 0.00 0.00 0.00 4.26
2550 2988 1.139853 CATACCCTTCTCCACTCAGCC 59.860 57.143 0.00 0.00 0.00 4.85
2551 2989 0.413832 TACCCTTCTCCACTCAGCCT 59.586 55.000 0.00 0.00 0.00 4.58
2552 2990 1.197430 ACCCTTCTCCACTCAGCCTG 61.197 60.000 0.00 0.00 0.00 4.85
2553 2991 1.601171 CCTTCTCCACTCAGCCTGG 59.399 63.158 0.00 0.00 0.00 4.45
2554 2992 1.078567 CTTCTCCACTCAGCCTGGC 60.079 63.158 11.65 11.65 0.00 4.85
2555 2993 1.537397 TTCTCCACTCAGCCTGGCT 60.537 57.895 17.22 17.22 40.77 4.75
2556 2994 1.548357 TTCTCCACTCAGCCTGGCTC 61.548 60.000 20.49 0.00 36.40 4.70
2557 2995 1.988956 CTCCACTCAGCCTGGCTCT 60.989 63.158 20.49 0.62 36.40 4.09
2558 2996 0.685785 CTCCACTCAGCCTGGCTCTA 60.686 60.000 20.49 9.24 36.40 2.43
2559 2997 0.685785 TCCACTCAGCCTGGCTCTAG 60.686 60.000 20.49 20.62 36.40 2.43
2560 2998 0.685785 CCACTCAGCCTGGCTCTAGA 60.686 60.000 26.42 17.64 36.40 2.43
2561 2999 1.189752 CACTCAGCCTGGCTCTAGAA 58.810 55.000 26.42 8.72 36.40 2.10
2562 3000 1.552337 CACTCAGCCTGGCTCTAGAAA 59.448 52.381 26.42 7.22 36.40 2.52
2563 3001 2.027745 CACTCAGCCTGGCTCTAGAAAA 60.028 50.000 26.42 5.76 36.40 2.29
2564 3002 2.639839 ACTCAGCCTGGCTCTAGAAAAA 59.360 45.455 26.42 4.59 36.40 1.94
2565 3003 3.006247 CTCAGCCTGGCTCTAGAAAAAC 58.994 50.000 20.49 0.00 36.40 2.43
2566 3004 2.371841 TCAGCCTGGCTCTAGAAAAACA 59.628 45.455 20.49 0.00 36.40 2.83
2567 3005 2.746362 CAGCCTGGCTCTAGAAAAACAG 59.254 50.000 20.49 0.00 36.40 3.16
2568 3006 1.470494 GCCTGGCTCTAGAAAAACAGC 59.530 52.381 12.43 0.00 0.00 4.40
2572 3010 3.059352 GGCTCTAGAAAAACAGCCTCA 57.941 47.619 10.41 0.00 46.88 3.86
2573 3011 3.615155 GGCTCTAGAAAAACAGCCTCAT 58.385 45.455 10.41 0.00 46.88 2.90
2574 3012 4.770795 GGCTCTAGAAAAACAGCCTCATA 58.229 43.478 10.41 0.00 46.88 2.15
2575 3013 5.372373 GGCTCTAGAAAAACAGCCTCATAT 58.628 41.667 10.41 0.00 46.88 1.78
2576 3014 5.238214 GGCTCTAGAAAAACAGCCTCATATG 59.762 44.000 10.41 0.00 46.88 1.78
2577 3015 5.277731 GCTCTAGAAAAACAGCCTCATATGC 60.278 44.000 0.00 0.00 0.00 3.14
2578 3016 4.811024 TCTAGAAAAACAGCCTCATATGCG 59.189 41.667 0.00 0.00 0.00 4.73
2579 3017 3.609853 AGAAAAACAGCCTCATATGCGA 58.390 40.909 0.00 0.00 0.00 5.10
2580 3018 3.375299 AGAAAAACAGCCTCATATGCGAC 59.625 43.478 0.00 0.00 0.00 5.19
2581 3019 2.401583 AAACAGCCTCATATGCGACA 57.598 45.000 0.00 0.00 0.00 4.35
2582 3020 2.627515 AACAGCCTCATATGCGACAT 57.372 45.000 0.00 0.00 0.00 3.06
2583 3021 2.160822 ACAGCCTCATATGCGACATC 57.839 50.000 0.00 0.00 0.00 3.06
2584 3022 1.690893 ACAGCCTCATATGCGACATCT 59.309 47.619 0.00 0.00 0.00 2.90
2585 3023 2.067013 CAGCCTCATATGCGACATCTG 58.933 52.381 0.00 0.00 0.00 2.90
2586 3024 0.795085 GCCTCATATGCGACATCTGC 59.205 55.000 0.00 0.00 0.00 4.26
2588 3026 2.486918 CCTCATATGCGACATCTGCAA 58.513 47.619 0.00 0.00 46.87 4.08
2589 3027 2.479275 CCTCATATGCGACATCTGCAAG 59.521 50.000 0.00 0.00 46.87 4.01
2590 3028 3.129109 CTCATATGCGACATCTGCAAGT 58.871 45.455 0.00 0.00 46.87 3.16
2591 3029 3.534554 TCATATGCGACATCTGCAAGTT 58.465 40.909 0.00 0.00 46.87 2.66
2592 3030 3.310501 TCATATGCGACATCTGCAAGTTG 59.689 43.478 0.00 0.00 46.87 3.16
2594 3032 1.308047 TGCGACATCTGCAAGTTGTT 58.692 45.000 4.48 0.00 46.23 2.83
2595 3033 1.675483 TGCGACATCTGCAAGTTGTTT 59.325 42.857 4.48 0.00 46.23 2.83
2596 3034 2.046313 GCGACATCTGCAAGTTGTTTG 58.954 47.619 4.48 0.48 46.23 2.93
2597 3035 2.653890 CGACATCTGCAAGTTGTTTGG 58.346 47.619 4.48 0.00 46.23 3.28
2598 3036 2.033299 CGACATCTGCAAGTTGTTTGGT 59.967 45.455 4.48 0.00 46.23 3.67
2599 3037 3.489059 CGACATCTGCAAGTTGTTTGGTT 60.489 43.478 4.48 0.00 46.23 3.67
2600 3038 3.784338 ACATCTGCAAGTTGTTTGGTTG 58.216 40.909 4.48 0.00 44.00 3.77
2601 3039 2.292103 TCTGCAAGTTGTTTGGTTGC 57.708 45.000 4.48 0.00 45.56 4.17
2602 3040 1.134848 TCTGCAAGTTGTTTGGTTGCC 60.135 47.619 4.48 0.00 44.90 4.52
2603 3041 0.901124 TGCAAGTTGTTTGGTTGCCT 59.099 45.000 4.48 0.00 44.90 4.75
2604 3042 1.289276 GCAAGTTGTTTGGTTGCCTG 58.711 50.000 4.48 0.00 40.61 4.85
2605 3043 1.289276 CAAGTTGTTTGGTTGCCTGC 58.711 50.000 0.00 0.00 32.95 4.85
2606 3044 0.901124 AAGTTGTTTGGTTGCCTGCA 59.099 45.000 0.00 0.00 0.00 4.41
2607 3045 1.122227 AGTTGTTTGGTTGCCTGCAT 58.878 45.000 0.00 0.00 0.00 3.96
2608 3046 2.315176 AGTTGTTTGGTTGCCTGCATA 58.685 42.857 0.00 0.00 0.00 3.14
2609 3047 2.899256 AGTTGTTTGGTTGCCTGCATAT 59.101 40.909 0.00 0.00 0.00 1.78
2610 3048 2.995258 GTTGTTTGGTTGCCTGCATATG 59.005 45.455 0.00 0.00 0.00 1.78
2611 3049 2.523245 TGTTTGGTTGCCTGCATATGA 58.477 42.857 6.97 0.00 0.00 2.15
2612 3050 2.896044 TGTTTGGTTGCCTGCATATGAA 59.104 40.909 6.97 0.00 0.00 2.57
2613 3051 3.253230 GTTTGGTTGCCTGCATATGAAC 58.747 45.455 6.97 1.19 0.00 3.18
2614 3052 2.512692 TGGTTGCCTGCATATGAACT 57.487 45.000 6.97 0.00 0.00 3.01
2615 3053 2.806434 TGGTTGCCTGCATATGAACTT 58.194 42.857 6.97 0.00 0.00 2.66
2616 3054 3.164268 TGGTTGCCTGCATATGAACTTT 58.836 40.909 6.97 0.00 0.00 2.66
2617 3055 3.193267 TGGTTGCCTGCATATGAACTTTC 59.807 43.478 6.97 0.00 0.00 2.62
2618 3056 3.445096 GGTTGCCTGCATATGAACTTTCT 59.555 43.478 6.97 0.00 0.00 2.52
2619 3057 4.418392 GTTGCCTGCATATGAACTTTCTG 58.582 43.478 6.97 0.00 0.00 3.02
2620 3058 2.424601 TGCCTGCATATGAACTTTCTGC 59.575 45.455 6.97 0.00 0.00 4.26
2621 3059 2.424601 GCCTGCATATGAACTTTCTGCA 59.575 45.455 6.97 4.79 40.29 4.41
2622 3060 3.067742 GCCTGCATATGAACTTTCTGCAT 59.932 43.478 6.97 0.00 41.55 3.96
2623 3061 4.441079 GCCTGCATATGAACTTTCTGCATT 60.441 41.667 6.97 0.00 41.55 3.56
2624 3062 5.221106 GCCTGCATATGAACTTTCTGCATTA 60.221 40.000 6.97 0.00 41.55 1.90
2625 3063 6.204359 CCTGCATATGAACTTTCTGCATTAC 58.796 40.000 6.97 0.00 41.55 1.89
2626 3064 5.809464 TGCATATGAACTTTCTGCATTACG 58.191 37.500 6.97 0.00 37.88 3.18
2627 3065 5.207768 GCATATGAACTTTCTGCATTACGG 58.792 41.667 6.97 0.00 33.13 4.02
2628 3066 5.751680 CATATGAACTTTCTGCATTACGGG 58.248 41.667 0.00 0.00 0.00 5.28
2629 3067 3.410631 TGAACTTTCTGCATTACGGGA 57.589 42.857 0.00 0.00 0.00 5.14
2630 3068 3.950397 TGAACTTTCTGCATTACGGGAT 58.050 40.909 0.00 0.00 0.00 3.85
2631 3069 3.938963 TGAACTTTCTGCATTACGGGATC 59.061 43.478 0.00 0.00 0.00 3.36
2632 3070 3.627395 ACTTTCTGCATTACGGGATCA 57.373 42.857 0.00 0.00 0.00 2.92
2633 3071 3.950397 ACTTTCTGCATTACGGGATCAA 58.050 40.909 0.00 0.00 0.00 2.57
2634 3072 3.689649 ACTTTCTGCATTACGGGATCAAC 59.310 43.478 0.00 0.00 0.00 3.18
2635 3073 3.627395 TTCTGCATTACGGGATCAACT 57.373 42.857 0.00 0.00 0.00 3.16
2636 3074 3.627395 TCTGCATTACGGGATCAACTT 57.373 42.857 0.00 0.00 0.00 2.66
2637 3075 3.950397 TCTGCATTACGGGATCAACTTT 58.050 40.909 0.00 0.00 0.00 2.66
2638 3076 3.689161 TCTGCATTACGGGATCAACTTTG 59.311 43.478 0.00 0.00 0.00 2.77
2639 3077 2.752354 TGCATTACGGGATCAACTTTGG 59.248 45.455 0.00 0.00 0.00 3.28
2640 3078 2.752903 GCATTACGGGATCAACTTTGGT 59.247 45.455 0.00 0.00 0.00 3.67
2641 3079 3.942748 GCATTACGGGATCAACTTTGGTA 59.057 43.478 0.00 0.00 0.00 3.25
2642 3080 4.201881 GCATTACGGGATCAACTTTGGTAC 60.202 45.833 0.00 0.00 0.00 3.34
2643 3081 4.620589 TTACGGGATCAACTTTGGTACA 57.379 40.909 0.00 0.00 0.00 2.90
2644 3082 3.713826 ACGGGATCAACTTTGGTACAT 57.286 42.857 0.00 0.00 39.30 2.29
2645 3083 4.028993 ACGGGATCAACTTTGGTACATT 57.971 40.909 0.00 0.00 39.30 2.71
2646 3084 3.756434 ACGGGATCAACTTTGGTACATTG 59.244 43.478 0.00 0.00 39.30 2.82
2647 3085 3.756434 CGGGATCAACTTTGGTACATTGT 59.244 43.478 0.00 0.00 39.30 2.71
2648 3086 4.217550 CGGGATCAACTTTGGTACATTGTT 59.782 41.667 0.00 0.00 39.30 2.83
2649 3087 5.278758 CGGGATCAACTTTGGTACATTGTTT 60.279 40.000 0.00 0.00 39.30 2.83
2650 3088 5.925969 GGGATCAACTTTGGTACATTGTTTG 59.074 40.000 0.00 0.00 39.30 2.93
2651 3089 5.925969 GGATCAACTTTGGTACATTGTTTGG 59.074 40.000 0.00 0.00 39.30 3.28
2652 3090 5.923733 TCAACTTTGGTACATTGTTTGGT 57.076 34.783 0.00 0.00 39.30 3.67
2653 3091 6.287589 TCAACTTTGGTACATTGTTTGGTT 57.712 33.333 0.00 0.00 39.30 3.67
2654 3092 6.102663 TCAACTTTGGTACATTGTTTGGTTG 58.897 36.000 0.00 0.00 39.30 3.77
2655 3093 4.438148 ACTTTGGTACATTGTTTGGTTGC 58.562 39.130 0.00 0.00 39.30 4.17
2656 3094 3.460857 TTGGTACATTGTTTGGTTGCC 57.539 42.857 0.00 0.00 39.30 4.52
2657 3095 2.672098 TGGTACATTGTTTGGTTGCCT 58.328 42.857 0.00 0.00 0.00 4.75
2658 3096 2.363680 TGGTACATTGTTTGGTTGCCTG 59.636 45.455 0.00 0.00 0.00 4.85
2659 3097 2.403259 GTACATTGTTTGGTTGCCTGC 58.597 47.619 0.00 0.00 0.00 4.85
2660 3098 0.829333 ACATTGTTTGGTTGCCTGCA 59.171 45.000 0.00 0.00 0.00 4.41
2661 3099 1.417145 ACATTGTTTGGTTGCCTGCAT 59.583 42.857 0.00 0.00 0.00 3.96
2662 3100 2.158784 ACATTGTTTGGTTGCCTGCATT 60.159 40.909 0.00 0.00 0.00 3.56
2663 3101 1.950828 TTGTTTGGTTGCCTGCATTG 58.049 45.000 0.00 0.00 0.00 2.82
2664 3102 0.829333 TGTTTGGTTGCCTGCATTGT 59.171 45.000 0.00 0.00 0.00 2.71
2665 3103 1.202510 TGTTTGGTTGCCTGCATTGTC 60.203 47.619 0.00 0.00 0.00 3.18
2666 3104 1.069049 GTTTGGTTGCCTGCATTGTCT 59.931 47.619 0.00 0.00 0.00 3.41
2667 3105 0.961019 TTGGTTGCCTGCATTGTCTC 59.039 50.000 0.00 0.00 0.00 3.36
2668 3106 1.236616 TGGTTGCCTGCATTGTCTCG 61.237 55.000 0.00 0.00 0.00 4.04
2669 3107 1.503542 GTTGCCTGCATTGTCTCGG 59.496 57.895 0.00 0.00 0.00 4.63
2670 3108 2.334946 TTGCCTGCATTGTCTCGGC 61.335 57.895 4.02 4.02 41.06 5.54
2671 3109 3.869272 GCCTGCATTGTCTCGGCG 61.869 66.667 0.00 0.00 0.00 6.46
2672 3110 3.869272 CCTGCATTGTCTCGGCGC 61.869 66.667 0.00 0.00 0.00 6.53
2673 3111 3.120385 CTGCATTGTCTCGGCGCA 61.120 61.111 10.83 0.00 0.00 6.09
2674 3112 2.436469 TGCATTGTCTCGGCGCAT 60.436 55.556 10.83 0.00 0.00 4.73
2675 3113 1.153469 TGCATTGTCTCGGCGCATA 60.153 52.632 10.83 0.00 0.00 3.14
2676 3114 1.276844 GCATTGTCTCGGCGCATAC 59.723 57.895 10.83 1.29 0.00 2.39
2677 3115 1.428370 GCATTGTCTCGGCGCATACA 61.428 55.000 10.83 4.34 0.00 2.29
2678 3116 1.006086 CATTGTCTCGGCGCATACAA 58.994 50.000 18.73 18.73 36.37 2.41
2679 3117 1.006832 ATTGTCTCGGCGCATACAAC 58.993 50.000 18.78 0.52 34.89 3.32
2680 3118 0.037697 TTGTCTCGGCGCATACAACT 60.038 50.000 10.83 0.00 0.00 3.16
2681 3119 0.812549 TGTCTCGGCGCATACAACTA 59.187 50.000 10.83 0.00 0.00 2.24
2682 3120 1.197910 GTCTCGGCGCATACAACTAC 58.802 55.000 10.83 0.00 0.00 2.73
2683 3121 0.812549 TCTCGGCGCATACAACTACA 59.187 50.000 10.83 0.00 0.00 2.74
2684 3122 0.921347 CTCGGCGCATACAACTACAC 59.079 55.000 10.83 0.00 0.00 2.90
2685 3123 0.244178 TCGGCGCATACAACTACACA 59.756 50.000 10.83 0.00 0.00 3.72
2686 3124 1.134936 TCGGCGCATACAACTACACAT 60.135 47.619 10.83 0.00 0.00 3.21
2687 3125 1.663643 CGGCGCATACAACTACACATT 59.336 47.619 10.83 0.00 0.00 2.71
2688 3126 2.536728 CGGCGCATACAACTACACATTG 60.537 50.000 10.83 0.00 0.00 2.82
2689 3127 2.418628 GGCGCATACAACTACACATTGT 59.581 45.455 10.83 0.00 42.78 2.71
2690 3128 3.119990 GGCGCATACAACTACACATTGTT 60.120 43.478 10.83 0.00 40.68 2.83
2691 3129 4.472286 GCGCATACAACTACACATTGTTT 58.528 39.130 0.30 0.00 40.68 2.83
2692 3130 4.320690 GCGCATACAACTACACATTGTTTG 59.679 41.667 0.30 0.42 40.68 2.93
2693 3131 4.851014 CGCATACAACTACACATTGTTTGG 59.149 41.667 9.36 0.00 40.68 3.28
2694 3132 5.561919 CGCATACAACTACACATTGTTTGGT 60.562 40.000 9.36 0.00 40.68 3.67
2695 3133 6.212955 GCATACAACTACACATTGTTTGGTT 58.787 36.000 9.36 0.00 40.68 3.67
2696 3134 6.143758 GCATACAACTACACATTGTTTGGTTG 59.856 38.462 22.81 22.81 40.68 3.77
2697 3135 4.429108 ACAACTACACATTGTTTGGTTGC 58.571 39.130 23.78 0.00 36.93 4.17
2698 3136 3.726291 ACTACACATTGTTTGGTTGCC 57.274 42.857 0.00 0.00 0.00 4.52
2699 3137 2.364002 ACTACACATTGTTTGGTTGCCC 59.636 45.455 0.00 0.00 0.00 5.36
2700 3138 0.103937 ACACATTGTTTGGTTGCCCG 59.896 50.000 0.00 0.00 0.00 6.13
2701 3139 1.068921 ACATTGTTTGGTTGCCCGC 59.931 52.632 0.00 0.00 0.00 6.13
2702 3140 1.068753 CATTGTTTGGTTGCCCGCA 59.931 52.632 0.00 0.00 0.00 5.69
2703 3141 0.320596 CATTGTTTGGTTGCCCGCAT 60.321 50.000 0.00 0.00 0.00 4.73
2704 3142 0.320596 ATTGTTTGGTTGCCCGCATG 60.321 50.000 0.00 0.00 0.00 4.06
2705 3143 2.048316 GTTTGGTTGCCCGCATGG 60.048 61.111 0.00 0.00 37.09 3.66
2717 3155 2.169832 CCGCATGGGGTATGACTAAG 57.830 55.000 20.38 0.00 39.21 2.18
2718 3156 1.691976 CCGCATGGGGTATGACTAAGA 59.308 52.381 20.38 0.00 39.21 2.10
2719 3157 2.289072 CCGCATGGGGTATGACTAAGAG 60.289 54.545 20.38 0.00 39.21 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 4.644103 ACACTCGGCTTACATACGTTAT 57.356 40.909 0.00 0.00 0.00 1.89
71 72 2.093181 TGGCATAACACTCGGCTTACAT 60.093 45.455 0.00 0.00 0.00 2.29
115 168 4.504858 CCCTGACATACCACTCAACTTAC 58.495 47.826 0.00 0.00 0.00 2.34
120 173 1.003118 GTGCCCTGACATACCACTCAA 59.997 52.381 0.00 0.00 0.00 3.02
142 195 2.847234 AAGGACGGCAGTGGGTCA 60.847 61.111 0.00 0.00 34.87 4.02
144 197 2.847234 TCAAGGACGGCAGTGGGT 60.847 61.111 0.00 0.00 0.00 4.51
150 233 1.965930 GCACATGTCAAGGACGGCA 60.966 57.895 0.00 0.00 34.95 5.69
168 251 7.613551 ACAAGTTCTAGGTAAGGGTATATGG 57.386 40.000 0.00 0.00 0.00 2.74
183 266 4.806330 CTCTCGGCTTACAACAAGTTCTA 58.194 43.478 0.00 0.00 0.00 2.10
190 273 2.362242 AGGCTCTCGGCTTACAACA 58.638 52.632 0.00 0.00 44.74 3.33
235 318 7.013529 GTGCTTACAAAATGTACTCGGTTTAG 58.986 38.462 0.00 0.00 31.69 1.85
269 352 2.269172 GCCTCGGCTTACAGTACTTTC 58.731 52.381 0.00 0.00 38.26 2.62
301 396 0.099791 ACCGCAAAAAGAACACACGG 59.900 50.000 0.00 0.00 44.49 4.94
351 475 2.248280 TCATGTGTTTGCCGTGTAGT 57.752 45.000 0.00 0.00 0.00 2.73
376 500 8.959548 TCAATCATTTGCAAGTATTCACTACAT 58.040 29.630 0.00 0.00 31.54 2.29
410 535 1.557371 TCGTCCATTGTCTTGGGCATA 59.443 47.619 0.00 0.00 41.67 3.14
415 540 4.369182 GGTATACTCGTCCATTGTCTTGG 58.631 47.826 2.25 0.00 38.18 3.61
419 544 4.369182 CAAGGGTATACTCGTCCATTGTC 58.631 47.826 2.25 0.00 37.95 3.18
423 548 2.963782 GTCCAAGGGTATACTCGTCCAT 59.036 50.000 2.25 0.00 0.00 3.41
429 554 3.113043 ACCAAGGTCCAAGGGTATACTC 58.887 50.000 2.25 0.00 0.00 2.59
440 565 1.110442 CAAACAAGCACCAAGGTCCA 58.890 50.000 0.00 0.00 0.00 4.02
441 566 0.249447 GCAAACAAGCACCAAGGTCC 60.249 55.000 0.00 0.00 0.00 4.46
442 567 0.594796 CGCAAACAAGCACCAAGGTC 60.595 55.000 0.00 0.00 0.00 3.85
443 568 1.319614 ACGCAAACAAGCACCAAGGT 61.320 50.000 0.00 0.00 0.00 3.50
444 569 0.871163 CACGCAAACAAGCACCAAGG 60.871 55.000 0.00 0.00 0.00 3.61
445 570 0.100325 TCACGCAAACAAGCACCAAG 59.900 50.000 0.00 0.00 0.00 3.61
446 571 0.528017 TTCACGCAAACAAGCACCAA 59.472 45.000 0.00 0.00 0.00 3.67
559 852 1.532007 CGTCTCTATAGGACCTGCGAC 59.468 57.143 3.53 0.00 0.00 5.19
565 858 0.873721 GGACGCGTCTCTATAGGACC 59.126 60.000 35.50 14.54 0.00 4.46
567 860 2.219458 CAAGGACGCGTCTCTATAGGA 58.781 52.381 35.50 0.00 0.00 2.94
572 865 2.430465 ACTTACAAGGACGCGTCTCTA 58.570 47.619 35.50 17.79 0.00 2.43
587 880 5.766222 TCTAGTCGACACAGGAAAACTTAC 58.234 41.667 19.50 0.00 0.00 2.34
599 896 0.374410 GTCCGCTCTCTAGTCGACAC 59.626 60.000 19.50 0.00 0.00 3.67
767 1076 2.616330 GCCTGCGCTTGCACAAGTA 61.616 57.895 9.73 0.00 45.56 2.24
836 1145 2.743718 CTCCTCCACGTTGGTGCT 59.256 61.111 0.00 0.00 43.00 4.40
936 1245 2.518825 CGACGTAGGAGGAGGGGG 60.519 72.222 0.00 0.00 0.00 5.40
937 1246 0.969409 AAACGACGTAGGAGGAGGGG 60.969 60.000 0.00 0.00 0.00 4.79
938 1247 0.455005 GAAACGACGTAGGAGGAGGG 59.545 60.000 0.00 0.00 0.00 4.30
1000 1328 0.387202 CTAGCTAGCTCGCACCACAT 59.613 55.000 23.26 0.00 0.00 3.21
1145 1473 2.654877 GGGACGCGAGGAAGTTGA 59.345 61.111 15.93 0.00 0.00 3.18
1207 1538 0.171455 GTCGTAGCAGTCCTGGACAG 59.829 60.000 27.48 20.98 34.60 3.51
1473 1807 4.767255 GCTGCCACCTCGGACCAG 62.767 72.222 0.00 0.00 36.56 4.00
1636 1973 4.154347 CTCGCCCCAGCTGTCCTC 62.154 72.222 13.81 0.00 36.60 3.71
1737 2083 5.939764 TTTGACCATCTGAGCTACAGTAT 57.060 39.130 11.37 3.93 45.86 2.12
1774 2120 7.949903 TGAGTACACAACAACGTTATGTATT 57.050 32.000 15.91 11.71 32.02 1.89
1781 2127 6.367969 GGATAGAATGAGTACACAACAACGTT 59.632 38.462 0.00 0.00 0.00 3.99
1808 2154 6.762661 CACAACAATTGAGGGACAATCTTTTT 59.237 34.615 13.59 0.00 46.90 1.94
1809 2155 6.282930 CACAACAATTGAGGGACAATCTTTT 58.717 36.000 13.59 0.00 46.90 2.27
1810 2156 5.739935 GCACAACAATTGAGGGACAATCTTT 60.740 40.000 13.59 0.00 46.90 2.52
1811 2157 4.262164 GCACAACAATTGAGGGACAATCTT 60.262 41.667 13.59 0.00 46.90 2.40
1812 2158 3.256631 GCACAACAATTGAGGGACAATCT 59.743 43.478 13.59 0.00 46.90 2.40
1813 2159 3.256631 AGCACAACAATTGAGGGACAATC 59.743 43.478 13.59 0.00 46.90 2.67
1815 2161 2.665165 AGCACAACAATTGAGGGACAA 58.335 42.857 13.59 0.00 42.95 3.18
1816 2162 2.363306 AGCACAACAATTGAGGGACA 57.637 45.000 13.59 0.00 0.00 4.02
1817 2163 3.674997 TCTAGCACAACAATTGAGGGAC 58.325 45.455 13.59 2.43 0.00 4.46
1818 2164 4.574674 ATCTAGCACAACAATTGAGGGA 57.425 40.909 13.59 0.00 0.00 4.20
1819 2165 5.185454 TGTATCTAGCACAACAATTGAGGG 58.815 41.667 13.59 6.49 0.00 4.30
1820 2166 6.017605 GGATGTATCTAGCACAACAATTGAGG 60.018 42.308 13.59 6.01 0.00 3.86
1821 2167 6.539826 TGGATGTATCTAGCACAACAATTGAG 59.460 38.462 13.59 6.78 0.00 3.02
1822 2168 6.413892 TGGATGTATCTAGCACAACAATTGA 58.586 36.000 13.59 0.00 0.00 2.57
1823 2169 6.682423 TGGATGTATCTAGCACAACAATTG 57.318 37.500 3.24 3.24 0.00 2.32
1824 2170 7.886629 AATGGATGTATCTAGCACAACAATT 57.113 32.000 1.72 2.46 0.00 2.32
1825 2171 7.886629 AAATGGATGTATCTAGCACAACAAT 57.113 32.000 1.72 0.00 0.00 2.71
1826 2172 8.800370 TTAAATGGATGTATCTAGCACAACAA 57.200 30.769 1.72 0.00 0.00 2.83
1827 2173 8.264347 TCTTAAATGGATGTATCTAGCACAACA 58.736 33.333 1.72 4.91 0.00 3.33
1828 2174 8.662781 TCTTAAATGGATGTATCTAGCACAAC 57.337 34.615 1.72 0.00 0.00 3.32
1829 2175 8.704668 TCTCTTAAATGGATGTATCTAGCACAA 58.295 33.333 1.72 0.00 0.00 3.33
1830 2176 8.144478 GTCTCTTAAATGGATGTATCTAGCACA 58.856 37.037 0.22 0.22 0.00 4.57
1831 2177 8.144478 TGTCTCTTAAATGGATGTATCTAGCAC 58.856 37.037 0.00 0.00 0.00 4.40
1832 2178 8.250143 TGTCTCTTAAATGGATGTATCTAGCA 57.750 34.615 0.00 0.00 0.00 3.49
1833 2179 9.202273 CTTGTCTCTTAAATGGATGTATCTAGC 57.798 37.037 0.00 0.00 0.00 3.42
1834 2180 9.202273 GCTTGTCTCTTAAATGGATGTATCTAG 57.798 37.037 0.00 0.00 0.00 2.43
1835 2181 8.928448 AGCTTGTCTCTTAAATGGATGTATCTA 58.072 33.333 0.00 0.00 0.00 1.98
1836 2182 7.800092 AGCTTGTCTCTTAAATGGATGTATCT 58.200 34.615 0.00 0.00 0.00 1.98
1837 2183 8.341173 CAAGCTTGTCTCTTAAATGGATGTATC 58.659 37.037 18.65 0.00 0.00 2.24
1838 2184 8.049117 TCAAGCTTGTCTCTTAAATGGATGTAT 58.951 33.333 25.19 0.00 0.00 2.29
1839 2185 7.394016 TCAAGCTTGTCTCTTAAATGGATGTA 58.606 34.615 25.19 0.00 0.00 2.29
1840 2186 6.240894 TCAAGCTTGTCTCTTAAATGGATGT 58.759 36.000 25.19 0.00 0.00 3.06
1841 2187 6.748333 TCAAGCTTGTCTCTTAAATGGATG 57.252 37.500 25.19 0.00 0.00 3.51
1842 2188 7.231317 TGTTTCAAGCTTGTCTCTTAAATGGAT 59.769 33.333 25.19 0.00 0.00 3.41
1843 2189 6.545666 TGTTTCAAGCTTGTCTCTTAAATGGA 59.454 34.615 25.19 0.00 0.00 3.41
1844 2190 6.738114 TGTTTCAAGCTTGTCTCTTAAATGG 58.262 36.000 25.19 0.00 0.00 3.16
1845 2191 7.917505 ACTTGTTTCAAGCTTGTCTCTTAAATG 59.082 33.333 25.19 13.03 0.00 2.32
1846 2192 8.000780 ACTTGTTTCAAGCTTGTCTCTTAAAT 57.999 30.769 25.19 3.25 0.00 1.40
1847 2193 7.391148 ACTTGTTTCAAGCTTGTCTCTTAAA 57.609 32.000 25.19 14.36 0.00 1.52
1848 2194 7.391148 AACTTGTTTCAAGCTTGTCTCTTAA 57.609 32.000 25.19 9.01 0.00 1.85
1849 2195 7.391148 AAACTTGTTTCAAGCTTGTCTCTTA 57.609 32.000 25.19 2.57 0.00 2.10
1850 2196 5.904362 AACTTGTTTCAAGCTTGTCTCTT 57.096 34.783 25.19 6.92 0.00 2.85
1851 2197 5.904362 AAACTTGTTTCAAGCTTGTCTCT 57.096 34.783 25.19 1.20 0.00 3.10
1852 2198 6.951256 AAAAACTTGTTTCAAGCTTGTCTC 57.049 33.333 25.19 16.00 0.00 3.36
1878 2224 9.483489 TGTTATAACTAATACTCCCTCTGTCAA 57.517 33.333 16.33 0.00 0.00 3.18
1879 2225 9.132923 CTGTTATAACTAATACTCCCTCTGTCA 57.867 37.037 16.33 0.00 0.00 3.58
1880 2226 9.134055 ACTGTTATAACTAATACTCCCTCTGTC 57.866 37.037 16.33 0.00 0.00 3.51
1896 2242 7.970384 TCACAATTCCATTCGACTGTTATAAC 58.030 34.615 8.75 8.75 0.00 1.89
1897 2243 7.279981 CCTCACAATTCCATTCGACTGTTATAA 59.720 37.037 1.83 0.00 0.00 0.98
1906 2252 2.488204 TGCCTCACAATTCCATTCGA 57.512 45.000 0.00 0.00 0.00 3.71
1907 2253 4.790878 CATATGCCTCACAATTCCATTCG 58.209 43.478 0.00 0.00 0.00 3.34
1912 2258 3.570975 TCATGCATATGCCTCACAATTCC 59.429 43.478 24.54 0.00 41.18 3.01
1961 2390 5.499004 AAGAGACACCTAGCCAAAATACA 57.501 39.130 0.00 0.00 0.00 2.29
1981 2410 7.093322 ACATTAGCTTTGAGATAGCCAAAAG 57.907 36.000 0.00 0.00 39.47 2.27
2074 2504 7.291182 TCCTAAATTCTTTTTCCATCCAAACCA 59.709 33.333 0.00 0.00 0.00 3.67
2075 2505 7.676004 TCCTAAATTCTTTTTCCATCCAAACC 58.324 34.615 0.00 0.00 0.00 3.27
2084 2514 7.040617 ACTCGGACTTTCCTAAATTCTTTTTCC 60.041 37.037 0.00 0.00 33.30 3.13
2085 2515 7.872881 ACTCGGACTTTCCTAAATTCTTTTTC 58.127 34.615 0.00 0.00 33.30 2.29
2192 2625 7.418337 TTCTGCCATGTGTACTATCTAGAAA 57.582 36.000 0.00 0.00 0.00 2.52
2226 2659 4.442612 CCGACTGTTGGATCTTCTCATCAT 60.443 45.833 8.48 0.00 0.00 2.45
2228 2661 3.452474 CCGACTGTTGGATCTTCTCATC 58.548 50.000 8.48 0.00 0.00 2.92
2258 2691 1.732259 CAGTAGTGACGTGGCAAATCC 59.268 52.381 0.00 0.00 0.00 3.01
2277 2710 3.620488 GTTGGATTAAGCTGATCCCACA 58.380 45.455 20.85 7.54 41.97 4.17
2279 2712 2.421388 CCGTTGGATTAAGCTGATCCCA 60.421 50.000 20.85 11.42 41.97 4.37
2280 2713 2.222027 CCGTTGGATTAAGCTGATCCC 58.778 52.381 20.85 9.85 41.97 3.85
2286 2719 5.250200 TGAATAACACCGTTGGATTAAGCT 58.750 37.500 0.00 0.00 0.00 3.74
2299 2732 8.028938 AGTGCATGAATAACTTTGAATAACACC 58.971 33.333 0.00 0.00 0.00 4.16
2300 2733 8.970691 AGTGCATGAATAACTTTGAATAACAC 57.029 30.769 0.00 0.00 0.00 3.32
2377 2815 9.331282 GGCATAGAACAGATCAACTTTTACTAT 57.669 33.333 0.00 0.00 0.00 2.12
2394 2832 6.272822 AGATGAAGTTTTTGGGCATAGAAC 57.727 37.500 0.00 0.00 0.00 3.01
2395 2833 9.693739 TTATAGATGAAGTTTTTGGGCATAGAA 57.306 29.630 0.00 0.00 0.00 2.10
2402 2840 9.550811 GTACGTTTTATAGATGAAGTTTTTGGG 57.449 33.333 0.00 0.00 0.00 4.12
2420 2858 7.068470 TGGGGATTTAAAACTTGAGTACGTTTT 59.932 33.333 12.12 12.12 43.44 2.43
2425 2863 9.772973 ATTTTTGGGGATTTAAAACTTGAGTAC 57.227 29.630 0.00 0.00 0.00 2.73
2433 2871 5.882040 TGGGGATTTTTGGGGATTTAAAAC 58.118 37.500 0.00 0.00 0.00 2.43
2434 2872 6.530601 TTGGGGATTTTTGGGGATTTAAAA 57.469 33.333 0.00 0.00 0.00 1.52
2436 2874 8.277918 CAATATTGGGGATTTTTGGGGATTTAA 58.722 33.333 7.62 0.00 0.00 1.52
2467 2905 0.106708 TGCATCGATTAGGAGCCACC 59.893 55.000 0.00 0.00 39.35 4.61
2495 2933 4.676586 CCGACGGCAACCAAACGC 62.677 66.667 0.00 0.00 0.00 4.84
2505 2943 2.413142 AGGTACTGTAGCCGACGGC 61.413 63.158 31.49 31.49 44.80 5.68
2506 2944 3.915575 AGGTACTGTAGCCGACGG 58.084 61.111 10.29 10.29 37.18 4.79
2517 2955 0.107848 GGGTATGCAACGCAGGTACT 60.108 55.000 0.00 0.00 43.65 2.73
2518 2956 0.107848 AGGGTATGCAACGCAGGTAC 60.108 55.000 14.92 1.84 43.65 3.34
2519 2957 0.616371 AAGGGTATGCAACGCAGGTA 59.384 50.000 14.92 0.00 43.65 3.08
2520 2958 0.676782 GAAGGGTATGCAACGCAGGT 60.677 55.000 14.92 3.97 43.65 4.00
2521 2959 0.392998 AGAAGGGTATGCAACGCAGG 60.393 55.000 14.92 0.00 43.65 4.85
2522 2960 1.009829 GAGAAGGGTATGCAACGCAG 58.990 55.000 14.92 0.00 43.65 5.18
2523 2961 0.392461 GGAGAAGGGTATGCAACGCA 60.392 55.000 14.92 0.00 43.32 5.24
2524 2962 0.392461 TGGAGAAGGGTATGCAACGC 60.392 55.000 0.00 0.00 41.25 4.84
2525 2963 1.066143 AGTGGAGAAGGGTATGCAACG 60.066 52.381 0.00 0.00 0.00 4.10
2526 2964 2.027192 TGAGTGGAGAAGGGTATGCAAC 60.027 50.000 0.00 0.00 0.00 4.17
2527 2965 2.237143 CTGAGTGGAGAAGGGTATGCAA 59.763 50.000 0.00 0.00 0.00 4.08
2528 2966 1.833630 CTGAGTGGAGAAGGGTATGCA 59.166 52.381 0.00 0.00 0.00 3.96
2529 2967 1.474143 GCTGAGTGGAGAAGGGTATGC 60.474 57.143 0.00 0.00 0.00 3.14
2530 2968 1.139853 GGCTGAGTGGAGAAGGGTATG 59.860 57.143 0.00 0.00 0.00 2.39
2531 2969 1.008938 AGGCTGAGTGGAGAAGGGTAT 59.991 52.381 0.00 0.00 0.00 2.73
2532 2970 0.413832 AGGCTGAGTGGAGAAGGGTA 59.586 55.000 0.00 0.00 0.00 3.69
2533 2971 1.159664 AGGCTGAGTGGAGAAGGGT 59.840 57.895 0.00 0.00 0.00 4.34
2534 2972 1.601171 CAGGCTGAGTGGAGAAGGG 59.399 63.158 9.42 0.00 0.00 3.95
2535 2973 1.601171 CCAGGCTGAGTGGAGAAGG 59.399 63.158 17.94 0.00 37.23 3.46
2536 2974 1.078567 GCCAGGCTGAGTGGAGAAG 60.079 63.158 17.94 0.00 37.23 2.85
2537 2975 1.537397 AGCCAGGCTGAGTGGAGAA 60.537 57.895 15.24 0.00 37.57 2.87
2538 2976 1.986757 GAGCCAGGCTGAGTGGAGA 60.987 63.158 22.26 0.00 39.88 3.71
2539 2977 0.685785 TAGAGCCAGGCTGAGTGGAG 60.686 60.000 22.26 0.00 39.88 3.86
2540 2978 0.685785 CTAGAGCCAGGCTGAGTGGA 60.686 60.000 22.26 0.00 39.88 4.02
2541 2979 0.685785 TCTAGAGCCAGGCTGAGTGG 60.686 60.000 22.26 5.31 39.88 4.00
2542 2980 1.189752 TTCTAGAGCCAGGCTGAGTG 58.810 55.000 22.26 6.33 39.88 3.51
2543 2981 1.944177 TTTCTAGAGCCAGGCTGAGT 58.056 50.000 22.26 5.65 39.88 3.41
2544 2982 3.006247 GTTTTTCTAGAGCCAGGCTGAG 58.994 50.000 22.26 16.16 39.88 3.35
2545 2983 2.371841 TGTTTTTCTAGAGCCAGGCTGA 59.628 45.455 22.26 7.38 39.88 4.26
2546 2984 2.746362 CTGTTTTTCTAGAGCCAGGCTG 59.254 50.000 22.26 7.75 39.88 4.85
2547 2985 2.877708 GCTGTTTTTCTAGAGCCAGGCT 60.878 50.000 16.12 16.12 43.88 4.58
2548 2986 1.470494 GCTGTTTTTCTAGAGCCAGGC 59.530 52.381 1.84 1.84 0.00 4.85
2553 2991 5.277731 GCATATGAGGCTGTTTTTCTAGAGC 60.278 44.000 6.97 0.00 0.00 4.09
2554 2992 5.050499 CGCATATGAGGCTGTTTTTCTAGAG 60.050 44.000 6.97 0.00 0.00 2.43
2555 2993 4.811024 CGCATATGAGGCTGTTTTTCTAGA 59.189 41.667 6.97 0.00 0.00 2.43
2556 2994 4.811024 TCGCATATGAGGCTGTTTTTCTAG 59.189 41.667 6.97 0.00 0.00 2.43
2557 2995 4.570772 GTCGCATATGAGGCTGTTTTTCTA 59.429 41.667 6.97 0.00 0.00 2.10
2558 2996 3.375299 GTCGCATATGAGGCTGTTTTTCT 59.625 43.478 6.97 0.00 0.00 2.52
2559 2997 3.126858 TGTCGCATATGAGGCTGTTTTTC 59.873 43.478 12.39 0.00 0.00 2.29
2560 2998 3.081061 TGTCGCATATGAGGCTGTTTTT 58.919 40.909 12.39 0.00 0.00 1.94
2561 2999 2.710377 TGTCGCATATGAGGCTGTTTT 58.290 42.857 12.39 0.00 0.00 2.43
2562 3000 2.401583 TGTCGCATATGAGGCTGTTT 57.598 45.000 12.39 0.00 0.00 2.83
2563 3001 2.103771 AGATGTCGCATATGAGGCTGTT 59.896 45.455 12.39 0.00 0.00 3.16
2564 3002 1.690893 AGATGTCGCATATGAGGCTGT 59.309 47.619 12.39 1.22 0.00 4.40
2565 3003 2.067013 CAGATGTCGCATATGAGGCTG 58.933 52.381 12.39 8.38 0.00 4.85
2566 3004 1.607509 GCAGATGTCGCATATGAGGCT 60.608 52.381 12.39 0.00 0.00 4.58
2567 3005 0.795085 GCAGATGTCGCATATGAGGC 59.205 55.000 6.97 5.31 0.00 4.70
2568 3006 2.159327 TGCAGATGTCGCATATGAGG 57.841 50.000 6.97 0.00 33.55 3.86
2569 3007 3.129109 ACTTGCAGATGTCGCATATGAG 58.871 45.455 6.97 2.88 39.58 2.90
2570 3008 3.183793 ACTTGCAGATGTCGCATATGA 57.816 42.857 6.97 0.00 39.58 2.15
2571 3009 3.064408 ACAACTTGCAGATGTCGCATATG 59.936 43.478 0.00 0.00 39.58 1.78
2572 3010 3.273434 ACAACTTGCAGATGTCGCATAT 58.727 40.909 0.00 0.00 39.58 1.78
2573 3011 2.698803 ACAACTTGCAGATGTCGCATA 58.301 42.857 0.00 0.00 39.58 3.14
2574 3012 1.527034 ACAACTTGCAGATGTCGCAT 58.473 45.000 0.00 0.00 39.58 4.73
2575 3013 1.308047 AACAACTTGCAGATGTCGCA 58.692 45.000 2.18 0.00 37.68 5.10
2576 3014 2.046313 CAAACAACTTGCAGATGTCGC 58.954 47.619 2.18 0.00 29.45 5.19
2577 3015 2.033299 ACCAAACAACTTGCAGATGTCG 59.967 45.455 2.18 0.00 29.45 4.35
2578 3016 3.715628 ACCAAACAACTTGCAGATGTC 57.284 42.857 2.18 0.00 29.45 3.06
2579 3017 3.784338 CAACCAAACAACTTGCAGATGT 58.216 40.909 0.00 0.00 32.27 3.06
2580 3018 2.540931 GCAACCAAACAACTTGCAGATG 59.459 45.455 0.00 0.00 40.09 2.90
2581 3019 2.483538 GGCAACCAAACAACTTGCAGAT 60.484 45.455 4.18 0.00 41.77 2.90
2582 3020 1.134848 GGCAACCAAACAACTTGCAGA 60.135 47.619 4.18 0.00 41.77 4.26
2583 3021 1.134729 AGGCAACCAAACAACTTGCAG 60.135 47.619 4.18 0.00 41.77 4.41
2584 3022 0.901124 AGGCAACCAAACAACTTGCA 59.099 45.000 4.18 0.00 41.77 4.08
2585 3023 1.289276 CAGGCAACCAAACAACTTGC 58.711 50.000 0.00 0.00 39.70 4.01
2586 3024 1.289276 GCAGGCAACCAAACAACTTG 58.711 50.000 0.00 0.00 34.52 3.16
2587 3025 0.901124 TGCAGGCAACCAAACAACTT 59.099 45.000 0.00 0.00 37.17 2.66
2588 3026 1.122227 ATGCAGGCAACCAAACAACT 58.878 45.000 0.00 0.00 37.17 3.16
2589 3027 2.810439 TATGCAGGCAACCAAACAAC 57.190 45.000 0.00 0.00 37.17 3.32
2590 3028 2.896044 TCATATGCAGGCAACCAAACAA 59.104 40.909 0.00 0.00 37.17 2.83
2591 3029 2.523245 TCATATGCAGGCAACCAAACA 58.477 42.857 0.00 0.00 37.17 2.83
2592 3030 3.056607 AGTTCATATGCAGGCAACCAAAC 60.057 43.478 0.00 1.90 37.17 2.93
2593 3031 3.164268 AGTTCATATGCAGGCAACCAAA 58.836 40.909 0.00 0.00 37.17 3.28
2594 3032 2.806434 AGTTCATATGCAGGCAACCAA 58.194 42.857 0.00 0.00 37.17 3.67
2595 3033 2.512692 AGTTCATATGCAGGCAACCA 57.487 45.000 0.00 0.00 37.17 3.67
2596 3034 3.445096 AGAAAGTTCATATGCAGGCAACC 59.555 43.478 0.00 0.00 37.17 3.77
2597 3035 4.418392 CAGAAAGTTCATATGCAGGCAAC 58.582 43.478 0.00 0.00 0.00 4.17
2598 3036 3.119388 GCAGAAAGTTCATATGCAGGCAA 60.119 43.478 0.00 0.00 36.88 4.52
2599 3037 2.424601 GCAGAAAGTTCATATGCAGGCA 59.575 45.455 0.00 0.00 36.88 4.75
2600 3038 2.424601 TGCAGAAAGTTCATATGCAGGC 59.575 45.455 0.00 0.00 41.65 4.85
2604 3042 5.207768 CCGTAATGCAGAAAGTTCATATGC 58.792 41.667 0.00 0.00 37.40 3.14
2605 3043 5.527214 TCCCGTAATGCAGAAAGTTCATATG 59.473 40.000 0.00 0.00 0.00 1.78
2606 3044 5.680619 TCCCGTAATGCAGAAAGTTCATAT 58.319 37.500 0.00 0.00 0.00 1.78
2607 3045 5.092554 TCCCGTAATGCAGAAAGTTCATA 57.907 39.130 0.00 0.00 0.00 2.15
2608 3046 3.950397 TCCCGTAATGCAGAAAGTTCAT 58.050 40.909 0.00 0.00 0.00 2.57
2609 3047 3.410631 TCCCGTAATGCAGAAAGTTCA 57.589 42.857 0.00 0.00 0.00 3.18
2610 3048 3.938963 TGATCCCGTAATGCAGAAAGTTC 59.061 43.478 0.00 0.00 0.00 3.01
2611 3049 3.950397 TGATCCCGTAATGCAGAAAGTT 58.050 40.909 0.00 0.00 0.00 2.66
2612 3050 3.627395 TGATCCCGTAATGCAGAAAGT 57.373 42.857 0.00 0.00 0.00 2.66
2613 3051 3.941483 AGTTGATCCCGTAATGCAGAAAG 59.059 43.478 0.00 0.00 0.00 2.62
2614 3052 3.950397 AGTTGATCCCGTAATGCAGAAA 58.050 40.909 0.00 0.00 0.00 2.52
2615 3053 3.627395 AGTTGATCCCGTAATGCAGAA 57.373 42.857 0.00 0.00 0.00 3.02
2616 3054 3.627395 AAGTTGATCCCGTAATGCAGA 57.373 42.857 0.00 0.00 0.00 4.26
2617 3055 3.181497 CCAAAGTTGATCCCGTAATGCAG 60.181 47.826 0.00 0.00 0.00 4.41
2618 3056 2.752354 CCAAAGTTGATCCCGTAATGCA 59.248 45.455 0.00 0.00 0.00 3.96
2619 3057 2.752903 ACCAAAGTTGATCCCGTAATGC 59.247 45.455 0.00 0.00 0.00 3.56
2620 3058 4.938832 TGTACCAAAGTTGATCCCGTAATG 59.061 41.667 0.00 0.00 0.00 1.90
2621 3059 5.168647 TGTACCAAAGTTGATCCCGTAAT 57.831 39.130 0.00 0.00 0.00 1.89
2622 3060 4.620589 TGTACCAAAGTTGATCCCGTAA 57.379 40.909 0.00 0.00 0.00 3.18
2623 3061 4.829872 ATGTACCAAAGTTGATCCCGTA 57.170 40.909 0.00 0.00 0.00 4.02
2624 3062 3.713826 ATGTACCAAAGTTGATCCCGT 57.286 42.857 0.00 0.00 0.00 5.28
2625 3063 3.756434 ACAATGTACCAAAGTTGATCCCG 59.244 43.478 0.00 0.00 0.00 5.14
2626 3064 5.722021 AACAATGTACCAAAGTTGATCCC 57.278 39.130 0.00 0.00 0.00 3.85
2627 3065 5.925969 CCAAACAATGTACCAAAGTTGATCC 59.074 40.000 0.00 0.00 0.00 3.36
2628 3066 6.512297 ACCAAACAATGTACCAAAGTTGATC 58.488 36.000 0.00 0.00 0.00 2.92
2629 3067 6.478512 ACCAAACAATGTACCAAAGTTGAT 57.521 33.333 0.00 0.00 0.00 2.57
2630 3068 5.923733 ACCAAACAATGTACCAAAGTTGA 57.076 34.783 0.00 0.00 0.00 3.18
2631 3069 5.220567 GCAACCAAACAATGTACCAAAGTTG 60.221 40.000 0.00 0.00 35.24 3.16
2632 3070 4.873259 GCAACCAAACAATGTACCAAAGTT 59.127 37.500 0.00 0.00 0.00 2.66
2633 3071 4.438148 GCAACCAAACAATGTACCAAAGT 58.562 39.130 0.00 0.00 0.00 2.66
2634 3072 3.807071 GGCAACCAAACAATGTACCAAAG 59.193 43.478 0.00 0.00 0.00 2.77
2635 3073 3.452627 AGGCAACCAAACAATGTACCAAA 59.547 39.130 0.00 0.00 37.17 3.28
2636 3074 3.034635 AGGCAACCAAACAATGTACCAA 58.965 40.909 0.00 0.00 37.17 3.67
2637 3075 2.363680 CAGGCAACCAAACAATGTACCA 59.636 45.455 0.00 0.00 37.17 3.25
2638 3076 2.866065 GCAGGCAACCAAACAATGTACC 60.866 50.000 0.00 0.00 37.17 3.34
2639 3077 2.223923 TGCAGGCAACCAAACAATGTAC 60.224 45.455 0.00 0.00 37.17 2.90
2640 3078 2.034878 TGCAGGCAACCAAACAATGTA 58.965 42.857 0.00 0.00 37.17 2.29
2641 3079 0.829333 TGCAGGCAACCAAACAATGT 59.171 45.000 0.00 0.00 37.17 2.71
2642 3080 2.172851 ATGCAGGCAACCAAACAATG 57.827 45.000 0.00 0.00 37.17 2.82
2643 3081 2.158784 ACAATGCAGGCAACCAAACAAT 60.159 40.909 0.00 0.00 37.17 2.71
2644 3082 1.209019 ACAATGCAGGCAACCAAACAA 59.791 42.857 0.00 0.00 37.17 2.83
2645 3083 0.829333 ACAATGCAGGCAACCAAACA 59.171 45.000 0.00 0.00 37.17 2.83
2646 3084 1.069049 AGACAATGCAGGCAACCAAAC 59.931 47.619 0.00 0.00 37.17 2.93
2647 3085 1.340889 GAGACAATGCAGGCAACCAAA 59.659 47.619 0.00 0.00 37.17 3.28
2648 3086 0.961019 GAGACAATGCAGGCAACCAA 59.039 50.000 0.00 0.00 37.17 3.67
2649 3087 1.236616 CGAGACAATGCAGGCAACCA 61.237 55.000 0.00 0.00 37.17 3.67
2650 3088 1.503542 CGAGACAATGCAGGCAACC 59.496 57.895 0.00 0.00 37.17 3.77
2651 3089 1.503542 CCGAGACAATGCAGGCAAC 59.496 57.895 0.00 0.00 0.00 4.17
2652 3090 2.334946 GCCGAGACAATGCAGGCAA 61.335 57.895 6.04 0.00 46.48 4.52
2653 3091 2.747460 GCCGAGACAATGCAGGCA 60.747 61.111 6.04 0.00 46.48 4.75
2654 3092 3.869272 CGCCGAGACAATGCAGGC 61.869 66.667 0.91 0.91 44.00 4.85
2655 3093 3.869272 GCGCCGAGACAATGCAGG 61.869 66.667 0.00 0.00 0.00 4.85
2656 3094 1.153597 TATGCGCCGAGACAATGCAG 61.154 55.000 4.18 0.00 39.17 4.41
2657 3095 1.153469 TATGCGCCGAGACAATGCA 60.153 52.632 4.18 0.00 40.23 3.96
2658 3096 1.276844 GTATGCGCCGAGACAATGC 59.723 57.895 4.18 0.00 0.00 3.56
2659 3097 1.006086 TTGTATGCGCCGAGACAATG 58.994 50.000 4.18 0.00 0.00 2.82
2660 3098 1.006832 GTTGTATGCGCCGAGACAAT 58.993 50.000 10.57 0.00 34.54 2.71
2661 3099 0.037697 AGTTGTATGCGCCGAGACAA 60.038 50.000 4.18 4.10 0.00 3.18
2662 3100 0.812549 TAGTTGTATGCGCCGAGACA 59.187 50.000 4.18 0.00 0.00 3.41
2663 3101 1.197910 GTAGTTGTATGCGCCGAGAC 58.802 55.000 4.18 0.00 0.00 3.36
2664 3102 0.812549 TGTAGTTGTATGCGCCGAGA 59.187 50.000 4.18 0.00 0.00 4.04
2665 3103 0.921347 GTGTAGTTGTATGCGCCGAG 59.079 55.000 4.18 0.00 0.00 4.63
2666 3104 0.244178 TGTGTAGTTGTATGCGCCGA 59.756 50.000 4.18 0.00 0.00 5.54
2667 3105 1.286501 ATGTGTAGTTGTATGCGCCG 58.713 50.000 4.18 0.00 0.00 6.46
2668 3106 2.418628 ACAATGTGTAGTTGTATGCGCC 59.581 45.455 4.18 0.00 37.98 6.53
2669 3107 3.740044 ACAATGTGTAGTTGTATGCGC 57.260 42.857 0.00 0.00 37.98 6.09
2670 3108 4.851014 CCAAACAATGTGTAGTTGTATGCG 59.149 41.667 0.00 0.00 38.76 4.73
2671 3109 5.768317 ACCAAACAATGTGTAGTTGTATGC 58.232 37.500 0.00 0.00 38.76 3.14
2672 3110 6.143758 GCAACCAAACAATGTGTAGTTGTATG 59.856 38.462 14.50 5.50 38.76 2.39
2673 3111 6.212955 GCAACCAAACAATGTGTAGTTGTAT 58.787 36.000 14.50 0.00 38.76 2.29
2674 3112 5.450688 GGCAACCAAACAATGTGTAGTTGTA 60.451 40.000 14.50 0.00 38.76 2.41
2675 3113 4.429108 GCAACCAAACAATGTGTAGTTGT 58.571 39.130 14.50 0.00 41.28 3.32
2676 3114 3.801594 GGCAACCAAACAATGTGTAGTTG 59.198 43.478 9.93 9.93 38.21 3.16
2677 3115 4.053469 GGCAACCAAACAATGTGTAGTT 57.947 40.909 0.00 0.00 0.00 2.24
2678 3116 3.726291 GGCAACCAAACAATGTGTAGT 57.274 42.857 0.00 0.00 0.00 2.73
2698 3136 1.691976 TCTTAGTCATACCCCATGCGG 59.308 52.381 0.00 0.00 34.35 5.69
2699 3137 3.032017 CTCTTAGTCATACCCCATGCG 57.968 52.381 0.00 0.00 34.35 4.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.