>input_sequence_70735
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-----------------------------------------------ATGTGGTGCGAGCTAGCTAGCATGTGTGCCGGC
GACGGCACCAGGGAGCGCTGCGCATGCGCGCTGTGTGGAGCGGCGGCGGACGTGCACTGCGAGGCCGACGCGGCGCTCCT
CTGCGCGCCCTGCGACGCCCAGGTGCACGGCGTCAACTTCCTCGCGTCCCGCCACCGCCGCACGCGCGTTTGGCG---GC
CTATGGGCGTGGACGTCCTGTCCAGGACTGCTACGACATCGCGCTCCTGCGTGTCCACGGCCGACTCCGCGACGACGGCG
GCGCTGCGCGGCAGGGGGACGACGCCGCCGGCC---AGGAGGCGCGGCGCGCGGGGCGAGGCGGTGCTCGAGGGCTGGGC
CAGGCGGATGGGCCTCGAGGCGGGGGCGGCGCACCGGCGTGCCGCGGCGGCTAGCCGCGCGATCCGGGTCCAGGTCGCCG
CGGCGGCGCCACGGGTGCCGCTGCGCGTTGCGATGGCTGCGGCGCTCTGGTCCGAGGTGGCAGCTCACGGCGTCCACGAG
CCCGGCGAAGCGCTCCGGCGCCTGGAGGCCTGCGCGCACGTGCCGATGAGGCTCCTCGTGGAGGTGGCAGCGGTGTCGAC
GATGGGGGACGCGCGCGCGAAGAAGAGGACGGCCGCAGTGGACG---CCGACGAGGACAGCTGGGGCGAGTGCTCGATCG
TGAGCCTGGACAAGACACCGTCTTCTCCAAGACACGAGCTTCTCTTGTTCGTTTAG------------------------
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>chr5D_1_TraesCS5D01G343300
AAAATAGATTTGCAAAAATTATGTAAAACTTAAGACGAGTGTGTAGAGTCAGGGCACACAGCTTATAACGTATGTAAGCC
----------------------------------------------------GAGTGTTATGCCAGGGCACATGGCTTAT
AACTTGTGTAAGTTGAGTGGTATGTCAGGGCACATGAC------------------------------CCACTGCCGTCC
TTGACATGTGCCATATACCCTTACCTAGAACTTGTTGTAAGCCGAGAGCCTTTTTGTTTATATACCGAGTGCCCTTTCTA
AACCGAGTACATTTTGTAAGCACTCGGCTTAGAAAGTACT------------GTAAGCCGAGGCCTCCATGTTTGCCGTG
TGTT-CTTTTTGCG--------------------------GTACCCGAAATATTGCACTCGGTTTACACA--TGACTACA
CGGCAAACACATGATTTTCATGTAGTGAATACTTGCAAATGATTGACATAA-TATATGCCCAAGACAATGGACGAGTATA
CCCTTGGACCTTGGTGCTTGTTTGCGTGAAACATAATACTATGA------------------------------------
-------------------------TGGTTTTGCGTAATT-----------------------ACAACATCCACATGCAG
TGAAAAAAGAGACAAGCAAAAAAGTTCTCTAGTAC--T------------------------------------------
----------------------------------------ATGGACGTTTGGTCGCAGGTCCTATAGAGACGCGTCCTTG
TAAGTT----TTCCTGTGTCGACTAGAGAGCGGACCAACGAGCTCGGATAACGACCGGCGGGCACGTAGTACGGTAGGTA
GTTCGAGCGGGTCTAGGTTTCGTGGCCAAGGATGACTACGT-------ACGCATCCCACCGA-----TGGAGCCCCCATC
CCCCAAACTCGCGGCTCACGTCGACCAGCCGCCGCTACTTGTGCAAGCGCAGGCGCGCCGTGGAATATTTGAGCGGCCGT
GGTTGCTCCTTGGACTGGTGGATGAGCACCAACGTGGAGGAGCGGAAAAGATCTCACGCCCCCGCCATCGTCTATAAATA
CGCGCCCGGACGAGGGGAAGCAAACCACGCTGCCTCGTCCTCCTCCCCCTCCTCCTACGTCGTTTCCCTTGGTACGTGTG
GT-------------------AGAACGCTCGAACCGAGAGCTCGATCATGTGGTGCGAGCTAGCTAGCATGTGTGCCGGC
GACGGCACCAGGGAGCGCTGCGCATGCGCGCTGTGTGGAGCGGCGGCGGACGTGCACTGCGAGGCCGACGCGGCGCTCCT
CTGCGCGCCCTGCGACGCCCAGGTGCACGGCGTCAACTTCCTCGCGTCCCGCCACCGCCGCACGCGCGTTTGGCG---GC
CTATGGGCGTGGACGTCCTGTCCAGGACTGCTACGACATCGCGCTCCTGCGTGTCCACGGCCGACTCCGCGACGACGGCG
GCGCTGCGCGGCAGGGGGACGACGCCGCCGGCC---AGGAGGCGCGGCGCGCGGGGCGAGGCGGTGCTCGAGGGCTGGGC
CAGGCGGATGGGCCTCGAGGCGGGGGCGGCGCACCGGCGTGCCGCGGCGGCTAGCCGCGCGATCCGGGTCCAGGTCGCCG
CGGCGGCGCCACGGGTGCCGCTGCGCGTTGCGATGGCTGCGGCGCTCTGGTCCGAGGTGGCAGCTCACGGCGTCCACGAG
CCCGGCGAAGCGCTCCGGCGCCTGGAGGCCTGCGCGCACGTGCCGATGAGGCTCCTCGTGGAGGTGGCAGCGGTGTCGAC
GATGGGGGACGCGCGCGCGAAGAAGAGGACGGCCGCAGTGGACG---CCGACGAGGACAGCTGGGGCGAGTGCTCGATCG
TGAGCCTGGACAAGACACCGTCTTCTCCAAGACACGAGCTTCTCTTGTTCGTTTAGTAC---------ACTAGTAGTAAG
TTATACTGTAGCTCAGATGGTCAAATTACAACCAAAGATAATACATAACGTTGTTGTGTACTCATTCTATCCAAAAAAGA
TTGTCCCTCAATTGTTGTGCTAGATACATCCATTTAAGAGACAAGCTTGAAACAAGTTTTTTTTTGACAGAGGGAGTATT
AGTTATAACAGTCGAATGGAATTGTGAGGCATATGCATGAAGT----------------------CATCTAAA-------
------------------------------------------------------ATATATTGAGTTGAGTGTATTTTGGC
TAGGTGTCTCTTTTGGCTATCTCAAAGCTAATGTACAATCCATAAAGTTAAA-TATGATTTATGAAGGTACATAACATTA
AATACAAAGTAAAAATGAATGACTGGTTTGGATGGAAAAAGAATTTAGGAAAGTCCGAGTATGGAAGAGTCTAGAATATA
GTACAAGTGTGCCTTGAGTTTTGTGCAAAATGTCCACATGGCTTAAGCTCAAC---CATAGAATTTTCTAGATAGTACAC
ATGGCAGAATCTGGTGAAATGATGAGAAGATCCAACAGTCGGCAACAATTGGATTTGCCACGTCACTACTGTGGGATCAG
CTTAATCCAACGGTGTTATTCAAAGTTATTCATGCACTATATGATGGTATAGATATA-----AGATATAGATAGACATTA
ATTGTTTAAATGTTATAGTAAAAGTTGATCTGTTCTATGCCCAAAAACTTCATCTATAAAACGTACTCAAGTTTTAAATC
CCCAAAAATCCCCAATATTGGGAGGGTGGCTCCTAATCGATGCACAAAGGGCGCGTTTGGTTGCCGTCGGCTACAGTACC
TGCGTTGCATACCCTTCTCCACTCAGCCTGGCTCTAGAAAAACAGCCTCATATGCGACATCTGCAAGTTGTTTGGTTGCC
TGCATATGAACTTTCTGCATTACGGGATCAACTTTGGTACATTGTTTGGTTGCCTGCATTGTCTCGGCGCATACAACTAC
ACATTGTTTGGTTGCCCGCATGGGGTATGACTAAGAG
>chr5B_1
AAAATAGATTTGCAAAAATTATGTAAAACTTAAGACGGGTGTGTAGAGTCAGGGCACACAGCTCGTAACATGTGTAAGCC
GAGTGTTTTTTTTTCTTTTTGCGGGGTTTAAAAAGAACACTCTGTGTAAGCTGAGTGTTATGCCCGGGCACATGGCTTAT
AACTTGTATAAGCTGAGTGGTATGTCAGGGCACACGGCTTATAGACAGCTCCATGACAGCATCGTCATCCACCGCCGTTG
TTGACACGTGGCATATACCCTTACCGAGAACTCGTTGTAAGCCGAGAGCCTTTTTGTTTATATACCAAGCGTCCTTTTTA
AACCGAGTACATTTTGTAAGCACTCGGCTTATTTATAAGGTACTGTAACTCGGTAAGCCAAGGCTTCCATTTCTGTCGTG
TGTTTCTTGTCACGGTACTCGGCTAGGGATGTAAGTCGAGTTTCT-GAAATATTGCACTCGGTTCACACA--TGGGTGCA
CGGAAACACG-TGATTTTCCTGTAGTGAATACTTGCAAATGATTGACATAATTACATGCACAT-----------AGTATA
CCCT-------TGGTGCTTGTCTGCGTGAAACATAGTACTACGA------------------------------------
-------------------------TGGTTTTGCGTAATCACCTCGATATGCGGTGAAAAAAGACAAAC-----------
------------------AAAAAGTTCTCTAGTAC--TCCCTCTGTAAATTAATGTAAGAGCATTTGGATCACTAAAGTA
GTGATCTAAATGCTAGTATACGGACTACGGAGGGAGTGGCATGGGCGTTTGCTCACAAGCCCTAGAGAGGCGCGTCTTTT
TAAATTTTCCTTCCTCTGTCGACTAGAGAGCGGACCAACGAGCTCGGATAACAACCGGCGGGCACATAGTACGGTAGGTA
GTTCGAGCGGGTCTAGGTTTCGTGGCCAAGGATGACTACGTTCGCATAACGCATCCCACCGA-----TGGAGCCCCCATC
CCCCAAACTCGCGGCTCACGTCGACCAGCCGCCGCCACTTGTGCAAGCGCAGGCGCGCCGTGGAATATTTGAGCGGCCGT
GGTTGCTCGTTGGACTGGTGGATGGGCACGAACGTGGAGGAGCGGAAAAGATCTCACGCCCCCGCTATCGTCTATAAATA
CGCGCCCGGACGAGGGGAAGCAAACCACGCTGCCTCGTCCTCCT---CCTCCTCCTACGTCGCTTCCCTTGGTACGTGTG
G-------------------AAGAACGCTCGAACCGAGAGCTCGATCGTGTGGTGCAAGCTAGCTAGCATGTGTGCCGGC
GACGGTACGGGGGAGCGCTGCGCATGCGCGCTGTGCGGAGCGGCGGCGGACGTGCACTGCGAGGCCGACGCGGCGTTCCT
CTGCGCGCCATGCGACGCCCACGTGCACGGCGCCAACTTCCTCGCGTCCCGCCACCGCCGCACGCGCGTGTCGCTGACGC
CTAAGGGCGTGAACGTCATATCCAGGACTGCTACGACGTCGAACTCCTGCGTGTCCACGGCCGACTCCGCGACGACGGCG
GCGCTGCACAGCAGGGGGGCGACGCTACCGGTC---AGAAGGCGCGGCGCGCGGGGCGAGGCGGTGCTTGAGGGCTGGGC
CAGGCGGATGGGCCTCGAGGCGGGGGCGGCGCACCGGCGTGCCGCGGCGGCCGGCCGCGCGATCCGGGCCCAGGTCGCCG
CGGCGGCGCCACGCGTGCCGCTGCGCGTCACCATGGCTGCGGTGCTGTGGTCGGAGGTGGCGGCTCCCGGCGTCCACGAG
CCCGGCGAAGCGCTCCGGCGCCTGGAGGCCTGCGCGCACGTGCCGGCGAGGCTCCTCGTGGAGGTGGCAGCGGTGTCGAC
GATGGGGGACGCGCGCGCGAAGAAGAGGACGGCCGCAGTGGACA---CCG---AGGACGGCTGGGGGGACTGCTTGACCG
TGAGCCTGGACAAGACACCATGTTCTCCAAGACACGAGCTTCTCTTGTTCGTTTAGTAC--------TACTAGGAGTAAG
TTCTACTGCAGCTCAGGTGGTCAAATTACAAGCAAAGAT-ATACATGACCTTACTGTGTAAAGTATGTCGGT--------
------------------------------------------------------------------ACAGAGGAAATATT
AAATATAACAG--GAATAGAATTGTGAGGCATATGCATGAGCATGAATTGTAACGTGCAAAAAATCATCTAAAATACTCA
TGCTCATGCAAAACTCATCAAAATATTTTATATGATTTTTTGTAATTGTGAGGCATATATTGAGTTGAGCGTATTTTGGC
TAGGTGTCTTTTTTGGCTATCTCAAAGCCAATGTGCAATCCACAAAGTTAAA-TATGATTTATGGAGGTACATAGCCTTA
AATACAAAGTAAAAATGAATGACA-GTTTGGATATAAAAAGAATTTAGGAAAGTCCGAGTACGGAAGAGTCTAGAATATA
GTAGAAGTGTGCCTTGAGTTTTGTGCAAAATGTCCACATGGCTTAAGCCCAAC---CATAGAATCTTCTAGAGAGTACAC
GTGGCAGAATCTGGTGAAGTAATGAGAAGATCCAACA-------------------------------------------
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>chr5A_3
--AATAGATTTGCAAAAAATATGTAAAACTTAAGACGAGTGTGTAGAGTCATGGCACACGGCTTGTAACGTGTCTAAGCC
GAGTGTAATGCTAGGGCACATGGCTTATAACT----------TGTATAAGCTGAGTGGTATGTCAGGGCACACAGCTGAT
AACTTGTATAAGCTGAGTGGTATGTCAGGGCACACGGCTTATAGACTGCTCTTTGACAGCGTCATCATCCACGT-CGTTG
TTTACACATGGCATATACCCTTAC-GAGAACTCGCTGTAAGCCGAGAGCCTTTTTGTTTACATACCGAATGCTCTTTTTA
AACTGAATACATGTTGTAGGCACTCGGCTTATAAGGTACT------------GTAAGCCGAAGCCTCCATGTTTGTTGTG
TGTT-CTTTTAACGGTACTCGGCTAGGGATGTAAGCCAAAGTACCCGAAATATTGCACTCGGTTTACACACATGGCTACA
CGGAAATG-CATGATTTTGCTGTAGTGAATACTGGCAAATGATTGACATAA-TACATGCACAAAACAGTGGACAAGTATA
CCCA-------TGGTGGTTGTTTGCGTGAAACATAATACTATGATGGGTTTTTTTTTGATAATCTAATACTATGATGGTT
TTTTTTTGATAATCTAATACTATGGTGGTTTTGCGTAATT-----------------------ACAAAC-----------
------------------AAAAAGTTCTCTAGTATAGT------------------------------------------
----------------------------------------ATGGACGTTTGCTCGCAA------GAGAGACGCGTCCTTT
CAAGTT----CTCCTCTGTCGACTAGAGAGCGGACCAACGAGCTCGGATAACGAGCGGCGGACACGTAGTACGGTACGTA
GTTCGAGCGGGTCTAGGTTTCGTGGCCAAGGATGACTACGT-------ACGCATCCCACCGATGGAATGGAGCCCCCATC
CCCCAAACTCGCGGCTCACGTCGACCAGCCGCCGCCACTTGTGCAAGTGCAGGCGCGCCGCGGAGTATTTGTGCGGCCGT
GGTTGCTCCTTGGACTGGTGGATGGGCACCAACGTGGAGGAGCGGAAAAGATCTCACGCCCCCGCCGTCGTCTATAAATA
CGCGCCCGGACGAGGGGAAGCAAACCACGCTG------CCTCGT---CGTCCCCCTCCGTCGTCTCCCTTGGTCCGTACG
TACGTACTTGGAGGAGCTGAAAGAACGCTCGAACCGAGAGCTCGATTGTTTGGCGCGAGCTTGCTAGCATGTGTGCCGGC
GACGGCACCAGGGAGCGCTGCGCATGCGCGCTGTGCGGCGCGGCGGCGGACGTGCACTGCGAGGCGGACGCGGCGTTCCT
CTGCGCGCCGTGTGACGCCCAGGTGCACGGCGCCAACTTCCTCGCGTCCCGCCACCGCCGCACGCGCGTCTCGCCGACGC
CTAAGGGCGTGGGCGTCATGTCCAGGACTGCTACGACGTCGAGCTCCTGCGTGTCCACGGCTGACTCCGCGACGACGGCG
GCGCTGCACGGCAGGAAGACGACGCCGCCGCCGGCTAGGAGGCGCGCCGCGCGGGGCGAGGCGGTGCTTGACGGCTGGGC
CAGGCGGATGGGCCTCGAGGCGGGGGCGGCGCACCGCTGTGCAACCGCTGCCAGCCGCGCGATCCGGGCCCAGGTAGCCG
CGGCCATGCCACACGTGCCGCTGCGTGTCGCGATGGCTGCGGCGCTGTGGTCGGAGGTGGCGGCTCATGGCGTCCACGAG
CCCGGCGAAGCGCTCCGGCGCCTGGAGGCCTGCGCGCACGTGCCGGCGAGGCTCCTCGTGGAGGTGGCTCCGCTGTCGAC
GATGGGGAACGCGCGCGGGAAGAAGAGGACGGCCGCAGTGGACGCCGCCG---AGGACGGCTGGGGCGAGTGCTCGATCG
TGAGCCCACACAAAACACCATCTTCTCCAAGACACGAGCTTCTCTTGTTCGTTTAGTACTACAGTACTACTACTAGTAAG
TTCTACTGTAGCTCAGATGATCAAATTACAACCAAAGAT-ATACGTGACGTTACTGTGTA--------------------
------------------------------------------------------------------------------TT
AAATATAACAT--GAATAGAATTGCGAGGCATATGCATGAAGTATAACATGCAA----AAAAAATCATCTAAA-------
------------------------------------------------------ATACATTGAGTTGAGCGTATTTTGGC
TAGGTGTCTTTTTTGGCAATCTCAAAGCTAATGTACAATCCACAAAGTTGGAGTATGATTTATGAAGGTACATAGCCTTA
AATACGAAGTAAAAATGAATGACA-GTCTGGATATAAAAAGAATTTAGGAAAGTCCAAGTATGGAAGAGTCTAGAATATA
GTAGAAGTGTGCCTTGAGTTTTGTGCAAAATGTTCACATGGCTTCTAGATAGTACACATAGAATCTTCTAGATAGTACAC
ATGGCATAATATGGTGAAGTAATGAGAAGATCCAACAGTCAACAACAATTCGATTTGCCACGTCACTACCGCCGGATCGG
CTTAATCCAACAATGGTATTCAAAGTTATTCGTGCACTATATGATGGTATAGATATAGATATAGATATATATAGATATTA
ATTGTTTAAATGTTGTAGTAAAAGTTGATCTAATCGATGACCAAAAACTTCATTCAT-AAACATACTCAAAATGTAAATC
CCCAAAAATCCCCGGTGTTGAGAGAGTGGCTCCTAATCGATGCACAAA--------------------------------
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>SNPs
----------------------------------------------------------------S------S--------
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-------S----S---------------------S-S-----------------------------------S-----SS
------S---S--------------S------S--------------------------------------------S--
-------------------------------S-------------------------------------------S----
----------SS--------------------------------------------------------------S-----
---S--SSS----------S----------------------------------S----S---S---S-----S------
----SSSSSSS---------------------------------------------------------------------
-------------------------------------------------------------------SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS--------------------------------------------------------------
---------------------------------------------------S-----S-S----S--------------S
---------------S----------------------------------------------------------------
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-----------------------------------S--------------------------------------------
------------------------S-------------------------------------------------------
--------------------------------------------SSS---------------------------------
-S---------------------------------------------S--------------------------------
-----------------------------------S---------------------------------------S----
---------S----------------------S------------------------------------S-S--S-----
---S-------------S-------------------S---S--------------------------------------
-------S------------------------------------------------------------S-----------
---------------------------------------------------S----------------S-----------
-------------S--------------S-----------------S-----S--------S------------------
---------------------------------------------SS---------------------------------
--------------------------------------------------SSS-----S---------------------
-------------------S------------------------------------------------------------
--S------------------------------------S------S-----SS------SSSSS-S-SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S-S----
-SS--------SS----S--------------------------------------------------------------
---------------------------------------------------------------------S----------
---------S--------------------------------S-------------------------------S-S---
-----------------------SS--------SS---------------------------------------------
---S--------------------------------------------S---------------S---------------
------------------S-S-------------------SS--------S------------------S-SS-----S-
-----------SS--S---------------S-------------------------------------S-----S----
--------------S----------------SS--S---S-------------SS--S----S-------SS-S------
-------------SS-S---S---S-----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_865
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---------------------------------------------CGTTTGGTCGCAGGTCCTAT---------------
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>reverse_2905
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------------------------GGTGGCTCCTAATCGATGCA------------------------------------
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