Multiple sequence alignment - TraesCS5D01G339100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G339100 chr5D 100.000 3176 0 0 1 3176 428391911 428395086 0.000000e+00 5866.0
1 TraesCS5D01G339100 chr5D 90.129 932 59 10 1721 2629 428468175 428469096 0.000000e+00 1181.0
2 TraesCS5D01G339100 chr5D 85.272 679 64 25 1799 2462 428463166 428463823 0.000000e+00 667.0
3 TraesCS5D01G339100 chr5D 89.770 391 21 7 1518 1908 428467922 428468293 1.710000e-132 483.0
4 TraesCS5D01G339100 chr5D 90.756 119 11 0 1721 1839 428468244 428468362 3.280000e-35 159.0
5 TraesCS5D01G339100 chr5D 89.916 119 12 0 1790 1908 428393631 428393749 1.530000e-33 154.0
6 TraesCS5D01G339100 chr5D 89.916 119 12 0 1721 1839 428393700 428393818 1.530000e-33 154.0
7 TraesCS5D01G339100 chr5D 85.714 126 16 2 1136 1260 286963595 286963471 7.150000e-27 132.0
8 TraesCS5D01G339100 chr5D 95.238 42 1 1 2650 2691 553814539 553814579 7.350000e-07 65.8
9 TraesCS5D01G339100 chr5D 94.444 36 2 0 99 134 506108816 506108851 4.430000e-04 56.5
10 TraesCS5D01G339100 chr5A 94.854 1982 62 15 763 2714 543962359 543964330 0.000000e+00 3059.0
11 TraesCS5D01G339100 chr5A 78.421 760 107 29 1 721 543960696 543961437 2.910000e-120 442.0
12 TraesCS5D01G339100 chr5A 91.346 104 9 0 1721 1824 543963397 543963500 3.300000e-30 143.0
13 TraesCS5D01G339100 chr5B 92.378 1207 51 21 728 1908 517583974 517585165 0.000000e+00 1681.0
14 TraesCS5D01G339100 chr5B 88.235 765 55 18 1721 2468 517585047 517585793 0.000000e+00 881.0
15 TraesCS5D01G339100 chr5B 87.432 183 15 5 2472 2650 517647988 517648166 1.490000e-48 204.0
16 TraesCS5D01G339100 chr2A 88.417 941 68 21 801 1725 72910098 72911013 0.000000e+00 1096.0
17 TraesCS5D01G339100 chr2A 79.670 364 48 12 1838 2176 72911021 72911383 4.090000e-59 239.0
18 TraesCS5D01G339100 chr2D 87.779 941 74 21 801 1725 73425198 73426113 0.000000e+00 1062.0
19 TraesCS5D01G339100 chr2D 82.292 288 36 5 1904 2176 73426208 73426495 5.300000e-58 235.0
20 TraesCS5D01G339100 chr2D 93.284 134 8 1 3043 3176 370634999 370634867 2.500000e-46 196.0
21 TraesCS5D01G339100 chr2D 92.248 129 8 2 3044 3171 498263009 498263136 7.000000e-42 182.0
22 TraesCS5D01G339100 chr2D 94.737 38 1 1 479 516 445059059 445059023 1.230000e-04 58.4
23 TraesCS5D01G339100 chr2B 87.636 922 68 23 825 1725 111171145 111172041 0.000000e+00 1029.0
24 TraesCS5D01G339100 chr2B 79.946 369 44 13 1838 2176 111172049 111172417 8.800000e-61 244.0
25 TraesCS5D01G339100 chr2B 90.769 130 8 4 3040 3167 511137061 511137188 1.510000e-38 171.0
26 TraesCS5D01G339100 chr4D 91.912 136 9 2 3042 3176 386494028 386493894 4.180000e-44 189.0
27 TraesCS5D01G339100 chr7D 91.406 128 9 2 3045 3171 568692918 568693044 1.170000e-39 174.0
28 TraesCS5D01G339100 chr1B 90.152 132 11 2 3041 3171 669910668 669910538 1.510000e-38 171.0
29 TraesCS5D01G339100 chr1B 92.308 52 0 3 2654 2702 34276768 34276818 1.580000e-08 71.3
30 TraesCS5D01G339100 chr3D 90.000 130 9 3 3044 3170 597311046 597310918 7.050000e-37 165.0
31 TraesCS5D01G339100 chr3D 87.200 125 16 0 1136 1260 589420982 589420858 3.300000e-30 143.0
32 TraesCS5D01G339100 chr3D 93.333 45 1 2 2648 2691 462076379 462076336 7.350000e-07 65.8
33 TraesCS5D01G339100 chr6B 86.897 145 15 4 3034 3176 644388353 644388495 3.280000e-35 159.0
34 TraesCS5D01G339100 chr7B 87.681 138 11 4 3042 3176 701288558 701288692 4.240000e-34 156.0
35 TraesCS5D01G339100 chr7B 82.051 117 20 1 21 137 12237566 12237451 7.250000e-17 99.0
36 TraesCS5D01G339100 chr7B 81.197 117 21 1 21 137 12202456 12202341 3.370000e-15 93.5
37 TraesCS5D01G339100 chr7B 100.000 28 0 0 426 453 483776668 483776641 6.000000e-03 52.8
38 TraesCS5D01G339100 chr4B 92.308 52 0 4 2654 2702 343544066 343544116 1.580000e-08 71.3
39 TraesCS5D01G339100 chr4B 90.385 52 1 4 2654 2702 343679160 343679210 7.350000e-07 65.8
40 TraesCS5D01G339100 chr4B 100.000 30 0 0 95 124 657177995 657177966 4.430000e-04 56.5
41 TraesCS5D01G339100 chr3B 90.909 55 1 3 2654 2705 585690107 585690054 1.580000e-08 71.3
42 TraesCS5D01G339100 chr3B 93.333 45 2 1 2646 2689 633173069 633173113 7.350000e-07 65.8
43 TraesCS5D01G339100 chrUn 90.385 52 1 4 2654 2702 12512488 12512438 7.350000e-07 65.8
44 TraesCS5D01G339100 chrUn 100.000 30 0 0 424 453 27584424 27584453 4.430000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G339100 chr5D 428391911 428395086 3175 False 2058.000000 5866 93.277333 1 3176 3 chr5D.!!$F4 3175
1 TraesCS5D01G339100 chr5D 428463166 428463823 657 False 667.000000 667 85.272000 1799 2462 1 chr5D.!!$F1 663
2 TraesCS5D01G339100 chr5D 428467922 428469096 1174 False 607.666667 1181 90.218333 1518 2629 3 chr5D.!!$F5 1111
3 TraesCS5D01G339100 chr5A 543960696 543964330 3634 False 1214.666667 3059 88.207000 1 2714 3 chr5A.!!$F1 2713
4 TraesCS5D01G339100 chr5B 517583974 517585793 1819 False 1281.000000 1681 90.306500 728 2468 2 chr5B.!!$F2 1740
5 TraesCS5D01G339100 chr2A 72910098 72911383 1285 False 667.500000 1096 84.043500 801 2176 2 chr2A.!!$F1 1375
6 TraesCS5D01G339100 chr2D 73425198 73426495 1297 False 648.500000 1062 85.035500 801 2176 2 chr2D.!!$F2 1375
7 TraesCS5D01G339100 chr2B 111171145 111172417 1272 False 636.500000 1029 83.791000 825 2176 2 chr2B.!!$F2 1351

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
709 749 0.036388 TCAAGTCTGACCCAATCGGC 60.036 55.000 3.76 0.0 33.15 5.54 F
715 755 1.212688 TCTGACCCAATCGGCAATCAT 59.787 47.619 0.00 0.0 33.15 2.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1635 2602 3.305516 CCCTGCACCTGGCCAAAC 61.306 66.667 7.01 0.0 43.89 2.93 R
2223 3374 4.489810 ACACATGAAAAGAAAAACGCACA 58.510 34.783 0.00 0.0 0.00 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.645710 ACCTTTGGTGTCTCGGATCT 58.354 50.000 0.00 0.00 32.98 2.75
35 36 1.550524 CCTTTGGTGTCTCGGATCTGA 59.449 52.381 3.71 3.71 0.00 3.27
38 39 1.924731 TGGTGTCTCGGATCTGACTT 58.075 50.000 0.00 0.00 34.57 3.01
41 42 2.753452 GGTGTCTCGGATCTGACTTGTA 59.247 50.000 0.00 0.00 34.57 2.41
43 44 2.423892 TGTCTCGGATCTGACTTGTAGC 59.576 50.000 0.00 0.00 34.57 3.58
47 48 5.009210 GTCTCGGATCTGACTTGTAGCTTAT 59.991 44.000 0.00 0.00 0.00 1.73
48 49 5.009110 TCTCGGATCTGACTTGTAGCTTATG 59.991 44.000 0.00 0.00 0.00 1.90
52 53 7.014326 TCGGATCTGACTTGTAGCTTATGTTAT 59.986 37.037 0.00 0.00 0.00 1.89
59 60 9.073475 TGACTTGTAGCTTATGTTATGGTTTTT 57.927 29.630 0.00 0.00 0.00 1.94
95 96 3.169378 TGCTTGGGCAGATGGTGA 58.831 55.556 0.00 0.00 44.28 4.02
98 99 1.589716 GCTTGGGCAGATGGTGACAC 61.590 60.000 0.00 0.00 40.34 3.67
120 121 3.594603 TCATCTTCGAGTTGGTCTTCC 57.405 47.619 0.00 0.00 0.00 3.46
152 153 2.208431 CTCCTTGGACGATTCATCTGC 58.792 52.381 0.00 0.00 0.00 4.26
154 155 1.407299 CCTTGGACGATTCATCTGCCA 60.407 52.381 0.00 0.00 0.00 4.92
155 156 2.358957 CTTGGACGATTCATCTGCCAA 58.641 47.619 0.00 0.00 34.54 4.52
168 169 0.247460 CTGCCAAGATGGAGTCGACA 59.753 55.000 19.50 0.00 40.96 4.35
176 177 1.728971 GATGGAGTCGACAAAGCACAG 59.271 52.381 19.50 0.00 0.00 3.66
189 190 5.008331 ACAAAGCACAGATTCATGTCATCT 58.992 37.500 4.80 4.80 0.00 2.90
192 193 3.199289 AGCACAGATTCATGTCATCTCCA 59.801 43.478 7.07 0.00 0.00 3.86
201 202 3.254411 TCATGTCATCTCCATAGAGCGTC 59.746 47.826 0.00 0.00 40.22 5.19
211 212 1.267261 CATAGAGCGTCGAGGTTAGGG 59.733 57.143 7.01 0.00 0.00 3.53
214 215 0.245813 GAGCGTCGAGGTTAGGGTTT 59.754 55.000 7.01 0.00 0.00 3.27
215 216 1.474077 GAGCGTCGAGGTTAGGGTTTA 59.526 52.381 7.01 0.00 0.00 2.01
216 217 1.475682 AGCGTCGAGGTTAGGGTTTAG 59.524 52.381 7.01 0.00 0.00 1.85
217 218 1.918595 CGTCGAGGTTAGGGTTTAGC 58.081 55.000 0.00 0.00 0.00 3.09
219 220 1.829849 GTCGAGGTTAGGGTTTAGCCT 59.170 52.381 5.72 5.72 37.43 4.58
220 221 2.105766 TCGAGGTTAGGGTTTAGCCTC 58.894 52.381 3.32 6.93 40.27 4.70
221 222 2.598686 GAGGTTAGGGTTTAGCCTCG 57.401 55.000 3.32 0.00 35.71 4.63
222 223 1.829849 GAGGTTAGGGTTTAGCCTCGT 59.170 52.381 3.32 0.00 35.71 4.18
223 224 3.026694 GAGGTTAGGGTTTAGCCTCGTA 58.973 50.000 3.32 0.00 35.71 3.43
226 227 2.128771 TAGGGTTTAGCCTCGTACGT 57.871 50.000 16.05 0.00 37.43 3.57
227 228 1.260544 AGGGTTTAGCCTCGTACGTT 58.739 50.000 16.05 2.59 37.43 3.99
228 229 1.203287 AGGGTTTAGCCTCGTACGTTC 59.797 52.381 16.05 5.66 37.43 3.95
229 230 1.262882 GGTTTAGCCTCGTACGTTCG 58.737 55.000 16.05 8.41 0.00 3.95
230 231 1.401539 GGTTTAGCCTCGTACGTTCGT 60.402 52.381 16.05 2.91 0.00 3.85
231 232 1.645751 GTTTAGCCTCGTACGTTCGTG 59.354 52.381 16.05 11.68 0.00 4.35
272 273 8.255206 TGTTAGGCACTTTAGATCGATTAAAGA 58.745 33.333 27.85 14.42 39.40 2.52
285 286 9.039870 AGATCGATTAAAGAGTTCAATGATGAC 57.960 33.333 0.00 0.00 34.61 3.06
290 291 9.302345 GATTAAAGAGTTCAATGATGACGACTA 57.698 33.333 0.00 0.00 34.61 2.59
294 295 5.066634 AGAGTTCAATGATGACGACTACGAT 59.933 40.000 0.00 0.00 42.66 3.73
297 298 4.279659 TCAATGATGACGACTACGATTCG 58.720 43.478 4.14 4.14 42.66 3.34
302 303 0.316854 GACGACTACGATTCGAGGGC 60.317 60.000 13.95 5.98 42.66 5.19
303 304 1.028330 ACGACTACGATTCGAGGGCA 61.028 55.000 13.95 0.00 42.66 5.36
304 305 0.591741 CGACTACGATTCGAGGGCAC 60.592 60.000 13.95 0.00 42.66 5.01
314 316 4.551388 GATTCGAGGGCACTAGTTCATAG 58.449 47.826 0.00 0.00 37.53 2.23
320 322 2.938956 GCACTAGTTCATAGGGGCAT 57.061 50.000 0.00 0.00 35.22 4.40
326 328 1.216175 AGTTCATAGGGGCATGTGCAT 59.784 47.619 7.36 0.00 44.36 3.96
327 329 1.338973 GTTCATAGGGGCATGTGCATG 59.661 52.381 7.36 7.74 44.36 4.06
358 360 5.947566 TCATTGATGTCATTGACAAGGTCAT 59.052 36.000 22.44 11.42 45.96 3.06
366 368 5.121454 GTCATTGACAAGGTCATTCTGACTC 59.879 44.000 11.93 0.00 42.40 3.36
368 370 4.963318 TGACAAGGTCATTCTGACTCTT 57.037 40.909 7.17 6.30 46.19 2.85
383 407 2.497675 GACTCTTGTATGGGTGAGCTCA 59.502 50.000 13.74 13.74 0.00 4.26
444 474 9.750125 GGAGCTAATTTTTATTATGTTTGAGGG 57.250 33.333 0.00 0.00 0.00 4.30
461 491 9.907229 TGTTTGAGGGGTTTTGTATTTTAAATT 57.093 25.926 0.00 0.00 0.00 1.82
500 530 7.861372 ACTACTTCCGATCAATAATAAGTGTCG 59.139 37.037 0.00 0.00 0.00 4.35
508 538 5.623335 TCAATAATAAGTGTCGCGGTTTTG 58.377 37.500 6.13 0.00 0.00 2.44
509 539 5.408909 TCAATAATAAGTGTCGCGGTTTTGA 59.591 36.000 6.13 0.00 0.00 2.69
512 542 4.759516 ATAAGTGTCGCGGTTTTGAAAT 57.240 36.364 6.13 0.00 0.00 2.17
517 547 3.422876 GTGTCGCGGTTTTGAAATTAACC 59.577 43.478 6.13 0.00 40.31 2.85
520 550 2.330286 GCGGTTTTGAAATTAACCCCG 58.670 47.619 2.88 0.00 40.55 5.73
524 554 4.706035 GGTTTTGAAATTAACCCCGGTTT 58.294 39.130 4.08 0.00 38.26 3.27
529 559 8.924691 GTTTTGAAATTAACCCCGGTTTAATAC 58.075 33.333 15.27 13.18 39.31 1.89
530 560 6.772360 TGAAATTAACCCCGGTTTAATACC 57.228 37.500 15.27 11.59 44.03 2.73
576 606 4.713814 TCAGAGGCAATAGATCAGTGTCTT 59.286 41.667 0.00 0.00 37.29 3.01
579 609 6.036953 CAGAGGCAATAGATCAGTGTCTTTTC 59.963 42.308 0.00 0.00 37.29 2.29
619 649 9.940166 AAAAATACAACACTCCGTAGTTTAAAG 57.060 29.630 0.00 0.00 35.51 1.85
620 650 6.716898 ATACAACACTCCGTAGTTTAAAGC 57.283 37.500 0.00 0.00 31.97 3.51
621 651 4.700700 ACAACACTCCGTAGTTTAAAGCT 58.299 39.130 0.00 0.00 31.97 3.74
622 652 4.510340 ACAACACTCCGTAGTTTAAAGCTG 59.490 41.667 0.00 0.00 31.97 4.24
623 653 4.332428 ACACTCCGTAGTTTAAAGCTGT 57.668 40.909 0.00 0.00 31.97 4.40
626 656 4.929808 CACTCCGTAGTTTAAAGCTGTGAT 59.070 41.667 0.00 0.00 31.97 3.06
645 676 7.602644 GCTGTGATACTTATTTTGGATCGGATA 59.397 37.037 0.00 0.00 0.00 2.59
646 677 9.489084 CTGTGATACTTATTTTGGATCGGATAA 57.511 33.333 0.00 0.00 0.00 1.75
658 689 4.021719 TGGATCGGATAAAATAGACCCGTC 60.022 45.833 0.00 0.00 40.87 4.79
664 695 6.047231 CGGATAAAATAGACCCGTCTCTTTT 58.953 40.000 18.92 18.92 43.62 2.27
665 696 7.068593 TCGGATAAAATAGACCCGTCTCTTTTA 59.931 37.037 20.98 20.98 44.62 1.52
666 697 7.381678 CGGATAAAATAGACCCGTCTCTTTTAG 59.618 40.741 22.16 12.33 44.20 1.85
670 710 8.549338 AAAATAGACCCGTCTCTTTTAGAAAG 57.451 34.615 15.41 0.00 41.28 2.62
691 731 7.768120 AGAAAGATACAACATTCACTCCATCTC 59.232 37.037 0.00 0.00 0.00 2.75
707 747 3.193263 CATCTCAAGTCTGACCCAATCG 58.807 50.000 3.76 0.00 0.00 3.34
709 749 0.036388 TCAAGTCTGACCCAATCGGC 60.036 55.000 3.76 0.00 33.15 5.54
715 755 1.212688 TCTGACCCAATCGGCAATCAT 59.787 47.619 0.00 0.00 33.15 2.45
726 1629 4.481368 TCGGCAATCATACTAACCACTT 57.519 40.909 0.00 0.00 0.00 3.16
728 1631 4.081365 TCGGCAATCATACTAACCACTTGA 60.081 41.667 0.00 0.00 0.00 3.02
729 1632 4.034048 CGGCAATCATACTAACCACTTGAC 59.966 45.833 0.00 0.00 0.00 3.18
730 1633 4.941263 GGCAATCATACTAACCACTTGACA 59.059 41.667 0.00 0.00 0.00 3.58
731 1634 5.163754 GGCAATCATACTAACCACTTGACAC 60.164 44.000 0.00 0.00 0.00 3.67
732 1635 5.411361 GCAATCATACTAACCACTTGACACA 59.589 40.000 0.00 0.00 0.00 3.72
733 1636 6.402550 GCAATCATACTAACCACTTGACACAG 60.403 42.308 0.00 0.00 0.00 3.66
734 1637 4.566004 TCATACTAACCACTTGACACAGC 58.434 43.478 0.00 0.00 0.00 4.40
735 1638 4.039852 TCATACTAACCACTTGACACAGCA 59.960 41.667 0.00 0.00 0.00 4.41
785 1705 1.496429 CTCCCATGCCCCAACTATTCT 59.504 52.381 0.00 0.00 0.00 2.40
793 1725 2.422945 GCCCCAACTATTCTAACCCAGG 60.423 54.545 0.00 0.00 0.00 4.45
814 1746 2.227036 CCTCACCACTCCCCTGCTT 61.227 63.158 0.00 0.00 0.00 3.91
820 1752 2.113986 ACTCCCCTGCTTGTGCAC 59.886 61.111 10.75 10.75 45.31 4.57
2223 3374 1.714899 GGCAGTTTGGATATGCGCGT 61.715 55.000 8.43 7.55 40.90 6.01
2444 3615 1.959226 CCGTCGGTGGGTTCAGTTG 60.959 63.158 2.08 0.00 0.00 3.16
2453 3626 3.554129 GGTGGGTTCAGTTGCCATTTTAC 60.554 47.826 0.00 0.00 0.00 2.01
2476 3649 6.401394 ACGGATGTATATGATGTCCAGATTG 58.599 40.000 0.00 0.00 0.00 2.67
2631 3804 2.171448 GGGATTCTAGCAAGCTCCTGAA 59.829 50.000 0.00 2.92 0.00 3.02
2650 3823 6.039270 TCCTGAACATTTTAATTGGCTATCGG 59.961 38.462 0.00 0.00 0.00 4.18
2653 3826 5.418310 ACATTTTAATTGGCTATCGGTCG 57.582 39.130 0.00 0.00 0.00 4.79
2714 3888 8.332464 CGTTTTAATTGGCTATCGAATCAACTA 58.668 33.333 0.00 0.00 0.00 2.24
2715 3889 9.997482 GTTTTAATTGGCTATCGAATCAACTAA 57.003 29.630 0.00 0.00 0.00 2.24
2718 3892 5.734855 TTGGCTATCGAATCAACTAAAGC 57.265 39.130 0.00 0.00 0.00 3.51
2719 3893 4.765273 TGGCTATCGAATCAACTAAAGCA 58.235 39.130 0.00 0.00 0.00 3.91
2720 3894 5.368145 TGGCTATCGAATCAACTAAAGCAT 58.632 37.500 0.00 0.00 0.00 3.79
2721 3895 6.521162 TGGCTATCGAATCAACTAAAGCATA 58.479 36.000 0.00 0.00 0.00 3.14
2722 3896 6.989759 TGGCTATCGAATCAACTAAAGCATAA 59.010 34.615 0.00 0.00 0.00 1.90
2723 3897 7.497579 TGGCTATCGAATCAACTAAAGCATAAA 59.502 33.333 0.00 0.00 0.00 1.40
2724 3898 8.342634 GGCTATCGAATCAACTAAAGCATAAAA 58.657 33.333 0.00 0.00 0.00 1.52
2725 3899 9.884465 GCTATCGAATCAACTAAAGCATAAAAT 57.116 29.630 0.00 0.00 0.00 1.82
2779 3953 4.697802 TCTACTTTGGTAGACCCCCTAA 57.302 45.455 2.24 0.00 46.44 2.69
2780 3954 5.027385 TCTACTTTGGTAGACCCCCTAAA 57.973 43.478 2.24 0.00 46.44 1.85
2781 3955 4.779489 TCTACTTTGGTAGACCCCCTAAAC 59.221 45.833 2.24 0.00 46.44 2.01
2782 3956 3.329277 ACTTTGGTAGACCCCCTAAACA 58.671 45.455 0.00 0.00 34.29 2.83
2783 3957 3.073503 ACTTTGGTAGACCCCCTAAACAC 59.926 47.826 0.00 0.00 34.29 3.32
2784 3958 2.419457 TGGTAGACCCCCTAAACACA 57.581 50.000 0.00 0.00 34.29 3.72
2785 3959 2.923908 TGGTAGACCCCCTAAACACAT 58.076 47.619 0.00 0.00 34.29 3.21
2786 3960 3.261962 TGGTAGACCCCCTAAACACATT 58.738 45.455 0.00 0.00 34.29 2.71
2787 3961 4.437023 TGGTAGACCCCCTAAACACATTA 58.563 43.478 0.00 0.00 34.29 1.90
2788 3962 4.850963 TGGTAGACCCCCTAAACACATTAA 59.149 41.667 0.00 0.00 34.29 1.40
2789 3963 5.493250 TGGTAGACCCCCTAAACACATTAAT 59.507 40.000 0.00 0.00 34.29 1.40
2790 3964 5.826208 GGTAGACCCCCTAAACACATTAATG 59.174 44.000 14.01 14.01 0.00 1.90
2791 3965 4.867086 AGACCCCCTAAACACATTAATGG 58.133 43.478 19.37 10.68 0.00 3.16
2792 3966 4.293901 AGACCCCCTAAACACATTAATGGT 59.706 41.667 19.37 11.28 0.00 3.55
2793 3967 5.018374 ACCCCCTAAACACATTAATGGTT 57.982 39.130 19.37 15.95 33.02 3.67
2794 3968 4.775253 ACCCCCTAAACACATTAATGGTTG 59.225 41.667 19.37 11.72 30.33 3.77
2795 3969 5.020132 CCCCCTAAACACATTAATGGTTGA 58.980 41.667 19.37 11.98 30.33 3.18
2796 3970 5.127031 CCCCCTAAACACATTAATGGTTGAG 59.873 44.000 19.37 18.79 30.33 3.02
2797 3971 5.949354 CCCCTAAACACATTAATGGTTGAGA 59.051 40.000 23.03 12.72 30.33 3.27
2798 3972 6.607198 CCCCTAAACACATTAATGGTTGAGAT 59.393 38.462 23.03 12.38 30.33 2.75
2799 3973 7.124147 CCCCTAAACACATTAATGGTTGAGATT 59.876 37.037 23.03 13.50 30.33 2.40
2800 3974 9.184523 CCCTAAACACATTAATGGTTGAGATTA 57.815 33.333 23.03 13.76 30.33 1.75
2803 3977 7.404671 AACACATTAATGGTTGAGATTACCC 57.595 36.000 19.37 0.00 34.66 3.69
2804 3978 5.891551 ACACATTAATGGTTGAGATTACCCC 59.108 40.000 19.37 0.00 34.66 4.95
2805 3979 5.008613 CACATTAATGGTTGAGATTACCCCG 59.991 44.000 19.37 0.00 34.66 5.73
2806 3980 4.847990 TTAATGGTTGAGATTACCCCGT 57.152 40.909 0.00 0.00 34.66 5.28
2807 3981 5.954153 TTAATGGTTGAGATTACCCCGTA 57.046 39.130 0.00 0.00 34.66 4.02
2808 3982 3.832615 ATGGTTGAGATTACCCCGTAC 57.167 47.619 0.00 0.00 34.66 3.67
2809 3983 1.832998 TGGTTGAGATTACCCCGTACC 59.167 52.381 0.00 0.00 34.66 3.34
2810 3984 2.113807 GGTTGAGATTACCCCGTACCT 58.886 52.381 0.00 0.00 0.00 3.08
2811 3985 2.502947 GGTTGAGATTACCCCGTACCTT 59.497 50.000 0.00 0.00 0.00 3.50
2812 3986 3.054875 GGTTGAGATTACCCCGTACCTTT 60.055 47.826 0.00 0.00 0.00 3.11
2813 3987 4.566278 GGTTGAGATTACCCCGTACCTTTT 60.566 45.833 0.00 0.00 0.00 2.27
2814 3988 4.476628 TGAGATTACCCCGTACCTTTTC 57.523 45.455 0.00 0.00 0.00 2.29
2815 3989 3.839490 TGAGATTACCCCGTACCTTTTCA 59.161 43.478 0.00 0.00 0.00 2.69
2816 3990 4.472108 TGAGATTACCCCGTACCTTTTCAT 59.528 41.667 0.00 0.00 0.00 2.57
2817 3991 5.662208 TGAGATTACCCCGTACCTTTTCATA 59.338 40.000 0.00 0.00 0.00 2.15
2818 3992 6.156602 TGAGATTACCCCGTACCTTTTCATAA 59.843 38.462 0.00 0.00 0.00 1.90
2819 3993 7.145474 AGATTACCCCGTACCTTTTCATAAT 57.855 36.000 0.00 0.00 0.00 1.28
2820 3994 8.266363 AGATTACCCCGTACCTTTTCATAATA 57.734 34.615 0.00 0.00 0.00 0.98
2821 3995 8.373220 AGATTACCCCGTACCTTTTCATAATAG 58.627 37.037 0.00 0.00 0.00 1.73
2822 3996 7.673641 TTACCCCGTACCTTTTCATAATAGA 57.326 36.000 0.00 0.00 0.00 1.98
2823 3997 6.170846 ACCCCGTACCTTTTCATAATAGAG 57.829 41.667 0.00 0.00 0.00 2.43
2824 3998 5.901276 ACCCCGTACCTTTTCATAATAGAGA 59.099 40.000 0.00 0.00 0.00 3.10
2825 3999 6.384886 ACCCCGTACCTTTTCATAATAGAGAA 59.615 38.462 0.00 0.00 0.00 2.87
2826 4000 7.072076 ACCCCGTACCTTTTCATAATAGAGAAT 59.928 37.037 0.00 0.00 0.00 2.40
2827 4001 8.591072 CCCCGTACCTTTTCATAATAGAGAATA 58.409 37.037 0.00 0.00 0.00 1.75
2828 4002 9.420551 CCCGTACCTTTTCATAATAGAGAATAC 57.579 37.037 0.00 0.00 0.00 1.89
2829 4003 9.125906 CCGTACCTTTTCATAATAGAGAATACG 57.874 37.037 0.00 0.00 32.83 3.06
2830 4004 9.888878 CGTACCTTTTCATAATAGAGAATACGA 57.111 33.333 0.00 0.00 33.93 3.43
2833 4007 9.712305 ACCTTTTCATAATAGAGAATACGATGG 57.288 33.333 0.00 0.00 0.00 3.51
2834 4008 9.712305 CCTTTTCATAATAGAGAATACGATGGT 57.288 33.333 0.00 0.00 0.00 3.55
2884 4058 4.361451 TTTAGAAACTAGGTACCGAGCG 57.639 45.455 20.79 6.59 0.00 5.03
2885 4059 1.101331 AGAAACTAGGTACCGAGCGG 58.899 55.000 20.79 7.48 42.03 5.52
2886 4060 0.101939 GAAACTAGGTACCGAGCGGG 59.898 60.000 20.79 0.00 43.62 6.13
2887 4061 1.325476 AAACTAGGTACCGAGCGGGG 61.325 60.000 20.79 0.00 41.60 5.73
2888 4062 2.194056 CTAGGTACCGAGCGGGGA 59.806 66.667 14.07 0.00 41.60 4.81
2889 4063 1.228490 CTAGGTACCGAGCGGGGAT 60.228 63.158 14.07 0.00 41.60 3.85
2890 4064 0.037303 CTAGGTACCGAGCGGGGATA 59.963 60.000 14.07 0.28 41.60 2.59
2891 4065 0.250901 TAGGTACCGAGCGGGGATAC 60.251 60.000 14.07 6.74 41.60 2.24
2892 4066 2.641559 GTACCGAGCGGGGATACG 59.358 66.667 14.07 0.00 41.60 3.06
2895 4069 4.280494 CCGAGCGGGGATACGGTG 62.280 72.222 0.00 0.00 45.44 4.94
2896 4070 4.944372 CGAGCGGGGATACGGTGC 62.944 72.222 0.00 0.00 45.44 5.01
2897 4071 3.537874 GAGCGGGGATACGGTGCT 61.538 66.667 0.00 0.00 45.44 4.40
2898 4072 3.081409 AGCGGGGATACGGTGCTT 61.081 61.111 0.00 0.00 43.60 3.91
2899 4073 1.741327 GAGCGGGGATACGGTGCTTA 61.741 60.000 0.00 0.00 45.44 3.09
2900 4074 1.144496 GCGGGGATACGGTGCTTAA 59.856 57.895 0.00 0.00 37.60 1.85
2901 4075 1.156034 GCGGGGATACGGTGCTTAAC 61.156 60.000 0.00 0.00 37.60 2.01
2902 4076 0.462789 CGGGGATACGGTGCTTAACT 59.537 55.000 0.00 0.00 37.60 2.24
2903 4077 1.805120 CGGGGATACGGTGCTTAACTG 60.805 57.143 0.00 0.00 41.37 3.16
2904 4078 1.474498 GGGGATACGGTGCTTAACTGG 60.474 57.143 0.00 0.00 39.74 4.00
2905 4079 1.474498 GGGATACGGTGCTTAACTGGG 60.474 57.143 0.00 0.00 39.74 4.45
2906 4080 1.208776 GGATACGGTGCTTAACTGGGT 59.791 52.381 0.00 0.00 39.74 4.51
2907 4081 2.355412 GGATACGGTGCTTAACTGGGTT 60.355 50.000 0.00 0.00 39.74 4.11
2908 4082 2.172851 TACGGTGCTTAACTGGGTTG 57.827 50.000 0.00 0.00 39.74 3.77
2909 4083 0.536460 ACGGTGCTTAACTGGGTTGG 60.536 55.000 0.00 0.00 39.74 3.77
2910 4084 1.862602 CGGTGCTTAACTGGGTTGGC 61.863 60.000 0.00 0.00 0.00 4.52
2911 4085 1.532604 GGTGCTTAACTGGGTTGGCC 61.533 60.000 0.00 0.00 0.00 5.36
2939 4113 2.983433 CGAGGCCACTTGCTATCTG 58.017 57.895 5.01 0.00 40.92 2.90
2940 4114 0.461548 CGAGGCCACTTGCTATCTGA 59.538 55.000 5.01 0.00 40.92 3.27
2941 4115 1.537776 CGAGGCCACTTGCTATCTGAG 60.538 57.143 5.01 0.00 40.92 3.35
2949 4123 3.606826 GCTATCTGAGCGTGCGTC 58.393 61.111 0.00 0.00 42.62 5.19
2950 4124 1.226688 GCTATCTGAGCGTGCGTCA 60.227 57.895 0.00 0.00 42.62 4.35
2951 4125 1.205485 GCTATCTGAGCGTGCGTCAG 61.205 60.000 12.27 12.27 42.62 3.51
2952 4126 0.593518 CTATCTGAGCGTGCGTCAGG 60.594 60.000 16.05 0.00 41.62 3.86
2953 4127 1.313091 TATCTGAGCGTGCGTCAGGT 61.313 55.000 16.05 13.33 41.62 4.00
2954 4128 1.313091 ATCTGAGCGTGCGTCAGGTA 61.313 55.000 16.05 4.41 41.62 3.08
2955 4129 1.080772 CTGAGCGTGCGTCAGGTAA 60.081 57.895 11.20 0.00 38.24 2.85
2956 4130 0.666274 CTGAGCGTGCGTCAGGTAAA 60.666 55.000 11.20 0.00 38.24 2.01
2957 4131 0.249531 TGAGCGTGCGTCAGGTAAAA 60.250 50.000 0.00 0.00 0.00 1.52
2958 4132 0.863144 GAGCGTGCGTCAGGTAAAAA 59.137 50.000 0.00 0.00 0.00 1.94
2959 4133 1.463444 GAGCGTGCGTCAGGTAAAAAT 59.537 47.619 0.00 0.00 0.00 1.82
2960 4134 1.463444 AGCGTGCGTCAGGTAAAAATC 59.537 47.619 0.00 0.00 0.00 2.17
2961 4135 1.465187 GCGTGCGTCAGGTAAAAATCC 60.465 52.381 0.00 0.00 0.00 3.01
2962 4136 2.073816 CGTGCGTCAGGTAAAAATCCT 58.926 47.619 0.00 0.00 35.45 3.24
2974 4148 8.361169 CAGGTAAAAATCCTGGGAAAATAAGA 57.639 34.615 4.27 0.00 46.03 2.10
2975 4149 8.811994 CAGGTAAAAATCCTGGGAAAATAAGAA 58.188 33.333 4.27 0.00 46.03 2.52
2976 4150 9.387397 AGGTAAAAATCCTGGGAAAATAAGAAA 57.613 29.630 0.00 0.00 33.62 2.52
2983 4157 9.782900 AATCCTGGGAAAATAAGAAAAATAGGA 57.217 29.630 0.00 0.00 34.34 2.94
2984 4158 8.823220 TCCTGGGAAAATAAGAAAAATAGGAG 57.177 34.615 0.00 0.00 0.00 3.69
2985 4159 7.839200 TCCTGGGAAAATAAGAAAAATAGGAGG 59.161 37.037 0.00 0.00 0.00 4.30
2986 4160 7.069950 CCTGGGAAAATAAGAAAAATAGGAGGG 59.930 40.741 0.00 0.00 0.00 4.30
2987 4161 7.714500 TGGGAAAATAAGAAAAATAGGAGGGA 58.286 34.615 0.00 0.00 0.00 4.20
2988 4162 8.351414 TGGGAAAATAAGAAAAATAGGAGGGAT 58.649 33.333 0.00 0.00 0.00 3.85
2989 4163 8.861086 GGGAAAATAAGAAAAATAGGAGGGATC 58.139 37.037 0.00 0.00 0.00 3.36
2990 4164 8.568794 GGAAAATAAGAAAAATAGGAGGGATCG 58.431 37.037 0.00 0.00 0.00 3.69
2991 4165 9.338622 GAAAATAAGAAAAATAGGAGGGATCGA 57.661 33.333 0.00 0.00 0.00 3.59
2992 4166 9.695155 AAAATAAGAAAAATAGGAGGGATCGAA 57.305 29.630 0.00 0.00 0.00 3.71
2993 4167 9.695155 AAATAAGAAAAATAGGAGGGATCGAAA 57.305 29.630 0.00 0.00 0.00 3.46
2994 4168 9.868160 AATAAGAAAAATAGGAGGGATCGAAAT 57.132 29.630 0.00 0.00 0.00 2.17
2995 4169 7.809546 AAGAAAAATAGGAGGGATCGAAATC 57.190 36.000 0.00 0.00 0.00 2.17
2996 4170 6.900194 AGAAAAATAGGAGGGATCGAAATCA 58.100 36.000 0.00 0.00 33.21 2.57
2997 4171 7.521669 AGAAAAATAGGAGGGATCGAAATCAT 58.478 34.615 0.00 0.00 33.21 2.45
2998 4172 8.660435 AGAAAAATAGGAGGGATCGAAATCATA 58.340 33.333 0.00 0.00 33.21 2.15
2999 4173 9.284968 GAAAAATAGGAGGGATCGAAATCATAA 57.715 33.333 0.00 0.00 33.21 1.90
3000 4174 8.622948 AAAATAGGAGGGATCGAAATCATAAC 57.377 34.615 0.00 0.00 33.21 1.89
3001 4175 4.625607 AGGAGGGATCGAAATCATAACC 57.374 45.455 0.00 0.00 33.21 2.85
3002 4176 4.235372 AGGAGGGATCGAAATCATAACCT 58.765 43.478 0.00 0.00 33.21 3.50
3003 4177 4.284746 AGGAGGGATCGAAATCATAACCTC 59.715 45.833 0.00 0.00 36.58 3.85
3004 4178 4.238514 GAGGGATCGAAATCATAACCTCG 58.761 47.826 0.00 0.00 31.30 4.63
3005 4179 3.641906 AGGGATCGAAATCATAACCTCGT 59.358 43.478 0.00 0.00 33.21 4.18
3006 4180 3.988517 GGGATCGAAATCATAACCTCGTC 59.011 47.826 0.00 0.00 33.21 4.20
3007 4181 3.988517 GGATCGAAATCATAACCTCGTCC 59.011 47.826 0.00 0.00 33.21 4.79
3008 4182 4.262079 GGATCGAAATCATAACCTCGTCCT 60.262 45.833 0.00 0.00 33.04 3.85
3009 4183 4.303086 TCGAAATCATAACCTCGTCCTC 57.697 45.455 0.00 0.00 33.15 3.71
3010 4184 3.952323 TCGAAATCATAACCTCGTCCTCT 59.048 43.478 0.00 0.00 33.15 3.69
3011 4185 5.128205 TCGAAATCATAACCTCGTCCTCTA 58.872 41.667 0.00 0.00 33.15 2.43
3012 4186 5.591472 TCGAAATCATAACCTCGTCCTCTAA 59.409 40.000 0.00 0.00 33.15 2.10
3013 4187 6.095860 TCGAAATCATAACCTCGTCCTCTAAA 59.904 38.462 0.00 0.00 33.15 1.85
3014 4188 6.198591 CGAAATCATAACCTCGTCCTCTAAAC 59.801 42.308 0.00 0.00 0.00 2.01
3015 4189 6.540438 AATCATAACCTCGTCCTCTAAACA 57.460 37.500 0.00 0.00 0.00 2.83
3016 4190 5.988310 TCATAACCTCGTCCTCTAAACAA 57.012 39.130 0.00 0.00 0.00 2.83
3017 4191 5.962433 TCATAACCTCGTCCTCTAAACAAG 58.038 41.667 0.00 0.00 0.00 3.16
3018 4192 2.745515 ACCTCGTCCTCTAAACAAGC 57.254 50.000 0.00 0.00 0.00 4.01
3019 4193 1.067776 ACCTCGTCCTCTAAACAAGCG 60.068 52.381 0.00 0.00 0.00 4.68
3020 4194 1.630148 CTCGTCCTCTAAACAAGCGG 58.370 55.000 0.00 0.00 0.00 5.52
3021 4195 1.201647 CTCGTCCTCTAAACAAGCGGA 59.798 52.381 0.00 0.00 36.73 5.54
3022 4196 1.614903 TCGTCCTCTAAACAAGCGGAA 59.385 47.619 0.00 0.00 40.81 4.30
3023 4197 1.725164 CGTCCTCTAAACAAGCGGAAC 59.275 52.381 0.00 0.00 40.81 3.62
3024 4198 2.074576 GTCCTCTAAACAAGCGGAACC 58.925 52.381 0.00 0.00 40.81 3.62
3025 4199 1.695242 TCCTCTAAACAAGCGGAACCA 59.305 47.619 0.00 0.00 36.12 3.67
3026 4200 2.076863 CCTCTAAACAAGCGGAACCAG 58.923 52.381 0.00 0.00 31.02 4.00
3027 4201 1.464997 CTCTAAACAAGCGGAACCAGC 59.535 52.381 0.00 0.00 0.00 4.85
3028 4202 0.521735 CTAAACAAGCGGAACCAGCC 59.478 55.000 0.00 0.00 34.64 4.85
3029 4203 0.179015 TAAACAAGCGGAACCAGCCA 60.179 50.000 0.00 0.00 34.64 4.75
3030 4204 1.734388 AAACAAGCGGAACCAGCCAC 61.734 55.000 0.00 0.00 34.64 5.01
3031 4205 2.281761 CAAGCGGAACCAGCCACT 60.282 61.111 0.00 0.00 34.64 4.00
3032 4206 2.032681 AAGCGGAACCAGCCACTC 59.967 61.111 0.00 0.00 34.64 3.51
3033 4207 3.883744 AAGCGGAACCAGCCACTCG 62.884 63.158 0.00 0.00 34.64 4.18
3034 4208 4.373116 GCGGAACCAGCCACTCGA 62.373 66.667 0.00 0.00 0.00 4.04
3035 4209 2.432628 CGGAACCAGCCACTCGAC 60.433 66.667 0.00 0.00 0.00 4.20
3036 4210 2.932234 CGGAACCAGCCACTCGACT 61.932 63.158 0.00 0.00 0.00 4.18
3037 4211 1.592400 CGGAACCAGCCACTCGACTA 61.592 60.000 0.00 0.00 0.00 2.59
3038 4212 0.108756 GGAACCAGCCACTCGACTAC 60.109 60.000 0.00 0.00 0.00 2.73
3039 4213 0.456312 GAACCAGCCACTCGACTACG 60.456 60.000 0.00 0.00 41.26 3.51
3040 4214 2.202623 CCAGCCACTCGACTACGC 60.203 66.667 0.00 0.00 39.58 4.42
3041 4215 2.701780 CCAGCCACTCGACTACGCT 61.702 63.158 0.00 0.00 39.58 5.07
3042 4216 1.374343 CCAGCCACTCGACTACGCTA 61.374 60.000 0.00 0.00 39.58 4.26
3043 4217 0.450583 CAGCCACTCGACTACGCTAA 59.549 55.000 0.00 0.00 39.58 3.09
3044 4218 0.733729 AGCCACTCGACTACGCTAAG 59.266 55.000 0.00 0.00 39.58 2.18
3045 4219 0.731417 GCCACTCGACTACGCTAAGA 59.269 55.000 0.00 0.00 39.58 2.10
3046 4220 1.268133 GCCACTCGACTACGCTAAGAG 60.268 57.143 0.00 0.00 39.58 2.85
3047 4221 1.268133 CCACTCGACTACGCTAAGAGC 60.268 57.143 0.00 0.00 39.58 4.09
3048 4222 1.397343 CACTCGACTACGCTAAGAGCA 59.603 52.381 0.00 0.00 42.58 4.26
3049 4223 2.032302 CACTCGACTACGCTAAGAGCAT 59.968 50.000 0.00 0.00 42.58 3.79
3050 4224 2.288458 ACTCGACTACGCTAAGAGCATC 59.712 50.000 0.00 0.00 42.58 3.91
3051 4225 2.546368 CTCGACTACGCTAAGAGCATCT 59.454 50.000 0.00 0.00 42.58 2.90
3052 4226 2.544686 TCGACTACGCTAAGAGCATCTC 59.455 50.000 0.00 0.00 42.58 2.75
3053 4227 4.597835 TCGACTACGCTAAGAGCATCTCC 61.598 52.174 0.00 0.00 42.58 3.71
3062 4236 2.378028 GAGCATCTCCAACAGTCGC 58.622 57.895 0.00 0.00 0.00 5.19
3063 4237 1.416813 GAGCATCTCCAACAGTCGCG 61.417 60.000 0.00 0.00 0.00 5.87
3064 4238 3.084579 CATCTCCAACAGTCGCGC 58.915 61.111 0.00 0.00 0.00 6.86
3065 4239 2.125512 ATCTCCAACAGTCGCGCC 60.126 61.111 0.00 0.00 0.00 6.53
3066 4240 2.650116 ATCTCCAACAGTCGCGCCT 61.650 57.895 0.00 0.00 0.00 5.52
3067 4241 1.320344 ATCTCCAACAGTCGCGCCTA 61.320 55.000 0.00 0.00 0.00 3.93
3068 4242 1.141881 CTCCAACAGTCGCGCCTAT 59.858 57.895 0.00 0.00 0.00 2.57
3069 4243 0.384309 CTCCAACAGTCGCGCCTATA 59.616 55.000 0.00 0.00 0.00 1.31
3070 4244 1.000163 CTCCAACAGTCGCGCCTATAT 60.000 52.381 0.00 0.00 0.00 0.86
3071 4245 2.228103 CTCCAACAGTCGCGCCTATATA 59.772 50.000 0.00 0.00 0.00 0.86
3072 4246 2.624364 TCCAACAGTCGCGCCTATATAA 59.376 45.455 0.00 0.00 0.00 0.98
3073 4247 2.987149 CCAACAGTCGCGCCTATATAAG 59.013 50.000 0.00 0.00 0.00 1.73
3074 4248 2.349297 ACAGTCGCGCCTATATAAGC 57.651 50.000 0.00 0.00 0.00 3.09
3079 4253 3.384927 CGCCTATATAAGCGCCGC 58.615 61.111 12.47 0.00 46.50 6.53
3080 4254 2.505498 CGCCTATATAAGCGCCGCG 61.505 63.158 12.47 8.83 46.50 6.46
3091 4265 4.755546 CGCCGCGCTGAAAAATTA 57.244 50.000 5.56 0.00 0.00 1.40
3092 4266 2.554656 CGCCGCGCTGAAAAATTAG 58.445 52.632 5.56 0.00 0.00 1.73
3093 4267 0.179200 CGCCGCGCTGAAAAATTAGT 60.179 50.000 5.56 0.00 0.00 2.24
3094 4268 1.259316 GCCGCGCTGAAAAATTAGTG 58.741 50.000 5.56 0.00 0.00 2.74
3095 4269 1.401018 GCCGCGCTGAAAAATTAGTGT 60.401 47.619 5.56 0.00 0.00 3.55
3096 4270 2.920647 GCCGCGCTGAAAAATTAGTGTT 60.921 45.455 5.56 0.00 0.00 3.32
3097 4271 3.305110 CCGCGCTGAAAAATTAGTGTTT 58.695 40.909 5.56 0.00 0.00 2.83
3098 4272 3.733727 CCGCGCTGAAAAATTAGTGTTTT 59.266 39.130 5.56 0.00 32.94 2.43
3099 4273 4.208253 CCGCGCTGAAAAATTAGTGTTTTT 59.792 37.500 5.56 0.00 42.29 1.94
3100 4274 5.123029 CGCGCTGAAAAATTAGTGTTTTTG 58.877 37.500 5.56 0.00 40.35 2.44
3101 4275 4.897924 GCGCTGAAAAATTAGTGTTTTTGC 59.102 37.500 0.00 1.07 40.35 3.68
3102 4276 5.123029 CGCTGAAAAATTAGTGTTTTTGCG 58.877 37.500 12.02 12.02 41.98 4.85
3103 4277 4.897924 GCTGAAAAATTAGTGTTTTTGCGC 59.102 37.500 0.00 0.00 40.35 6.09
3104 4278 5.059660 TGAAAAATTAGTGTTTTTGCGCG 57.940 34.783 0.00 0.00 40.35 6.86
3105 4279 3.497482 AAAATTAGTGTTTTTGCGCGC 57.503 38.095 27.26 27.26 0.00 6.86
3106 4280 1.049251 AATTAGTGTTTTTGCGCGCG 58.951 45.000 28.44 28.44 0.00 6.86
3107 4281 1.334288 ATTAGTGTTTTTGCGCGCGC 61.334 50.000 45.02 45.02 42.35 6.86
3140 4314 4.634703 TCCAGCGGAGGCGCAAAA 62.635 61.111 10.83 0.00 46.35 2.44
3141 4315 3.669344 CCAGCGGAGGCGCAAAAA 61.669 61.111 10.83 0.00 46.35 1.94
3142 4316 2.429069 CAGCGGAGGCGCAAAAAC 60.429 61.111 10.83 0.00 46.35 2.43
3143 4317 3.670377 AGCGGAGGCGCAAAAACC 61.670 61.111 10.83 3.54 46.35 3.27
3165 4339 3.858040 CGCGGCGCATATCTAATTC 57.142 52.632 32.61 0.00 0.00 2.17
3166 4340 1.067693 CGCGGCGCATATCTAATTCA 58.932 50.000 32.61 0.00 0.00 2.57
3167 4341 1.459209 CGCGGCGCATATCTAATTCAA 59.541 47.619 32.61 0.00 0.00 2.69
3168 4342 2.721797 CGCGGCGCATATCTAATTCAAC 60.722 50.000 32.61 0.00 0.00 3.18
3169 4343 2.721797 GCGGCGCATATCTAATTCAACG 60.722 50.000 29.21 0.00 0.00 4.10
3170 4344 2.721797 CGGCGCATATCTAATTCAACGC 60.722 50.000 10.83 0.00 44.02 4.84
3171 4345 2.223144 GGCGCATATCTAATTCAACGCA 59.777 45.455 10.83 0.00 46.35 5.24
3172 4346 3.218398 GCGCATATCTAATTCAACGCAC 58.782 45.455 0.30 0.00 44.15 5.34
3173 4347 3.460357 CGCATATCTAATTCAACGCACG 58.540 45.455 0.00 0.00 0.00 5.34
3174 4348 3.661678 CGCATATCTAATTCAACGCACGG 60.662 47.826 0.00 0.00 0.00 4.94
3175 4349 3.363970 GCATATCTAATTCAACGCACGGG 60.364 47.826 0.00 0.00 0.00 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.072143 ACCAAAGGTTCCCCCTCCT 60.072 57.895 0.00 0.00 45.47 3.69
6 7 0.251209 GACACCAAAGGTTCCCCCTC 60.251 60.000 0.00 0.00 45.47 4.30
9 10 0.605589 CGAGACACCAAAGGTTCCCC 60.606 60.000 0.00 0.00 31.02 4.81
13 14 1.978580 AGATCCGAGACACCAAAGGTT 59.021 47.619 0.00 0.00 31.02 3.50
15 16 1.550524 TCAGATCCGAGACACCAAAGG 59.449 52.381 0.00 0.00 0.00 3.11
17 18 2.248248 AGTCAGATCCGAGACACCAAA 58.752 47.619 11.64 0.00 37.23 3.28
27 28 4.938080 ACATAAGCTACAAGTCAGATCCG 58.062 43.478 0.00 0.00 0.00 4.18
33 34 8.630054 AAAACCATAACATAAGCTACAAGTCA 57.370 30.769 0.00 0.00 0.00 3.41
59 60 0.333993 ACTGCCCCTACGAGGACTAA 59.666 55.000 0.00 0.00 37.67 2.24
72 73 3.951769 ATCTGCCCAAGCACTGCCC 62.952 63.158 0.00 0.00 46.52 5.36
88 89 3.849911 TCGAAGATGAAGTGTCACCATC 58.150 45.455 12.03 12.03 36.31 3.51
92 93 3.430218 CCAACTCGAAGATGAAGTGTCAC 59.570 47.826 0.00 0.00 36.31 3.67
95 96 3.322254 AGACCAACTCGAAGATGAAGTGT 59.678 43.478 0.00 0.00 33.89 3.55
98 99 3.929610 GGAAGACCAACTCGAAGATGAAG 59.070 47.826 0.00 0.00 33.35 3.02
101 102 3.257393 CTGGAAGACCAACTCGAAGATG 58.743 50.000 0.00 0.00 46.32 2.90
102 103 2.234908 CCTGGAAGACCAACTCGAAGAT 59.765 50.000 0.00 0.00 46.32 2.40
120 121 3.439857 TCCAAGGAGGATCAAAACCTG 57.560 47.619 0.00 0.00 43.07 4.00
147 148 1.137872 GTCGACTCCATCTTGGCAGAT 59.862 52.381 8.70 0.00 40.79 2.90
152 153 1.734465 GCTTTGTCGACTCCATCTTGG 59.266 52.381 17.92 0.00 39.43 3.61
154 155 2.224281 TGTGCTTTGTCGACTCCATCTT 60.224 45.455 17.92 0.00 0.00 2.40
155 156 1.344438 TGTGCTTTGTCGACTCCATCT 59.656 47.619 17.92 0.00 0.00 2.90
168 169 4.639310 GGAGATGACATGAATCTGTGCTTT 59.361 41.667 16.84 0.00 34.50 3.51
176 177 4.863689 CGCTCTATGGAGATGACATGAATC 59.136 45.833 10.75 2.17 41.86 2.52
189 190 2.219458 CTAACCTCGACGCTCTATGGA 58.781 52.381 0.00 0.00 0.00 3.41
192 193 1.133853 ACCCTAACCTCGACGCTCTAT 60.134 52.381 0.00 0.00 0.00 1.98
201 202 2.598686 GAGGCTAAACCCTAACCTCG 57.401 55.000 0.00 0.00 40.58 4.63
211 212 1.645751 CACGAACGTACGAGGCTAAAC 59.354 52.381 24.41 2.95 37.03 2.01
214 215 1.063027 CATCACGAACGTACGAGGCTA 59.937 52.381 24.41 2.82 37.03 3.93
215 216 0.179171 CATCACGAACGTACGAGGCT 60.179 55.000 24.41 2.76 37.03 4.58
216 217 1.138047 CCATCACGAACGTACGAGGC 61.138 60.000 24.41 9.36 37.03 4.70
217 218 1.138047 GCCATCACGAACGTACGAGG 61.138 60.000 24.41 12.49 37.03 4.63
219 220 1.512522 CGCCATCACGAACGTACGA 60.513 57.895 24.41 0.00 37.03 3.43
220 221 1.461317 CTCGCCATCACGAACGTACG 61.461 60.000 15.01 15.01 42.39 3.67
221 222 0.179181 TCTCGCCATCACGAACGTAC 60.179 55.000 0.00 0.00 42.39 3.67
222 223 0.736636 ATCTCGCCATCACGAACGTA 59.263 50.000 0.00 0.00 42.39 3.57
223 224 0.525668 GATCTCGCCATCACGAACGT 60.526 55.000 0.00 0.00 42.39 3.99
226 227 2.033424 CACTAGATCTCGCCATCACGAA 59.967 50.000 0.00 0.00 42.39 3.85
227 228 1.604278 CACTAGATCTCGCCATCACGA 59.396 52.381 0.00 0.00 40.36 4.35
228 229 1.335182 ACACTAGATCTCGCCATCACG 59.665 52.381 0.00 0.00 0.00 4.35
229 230 3.444703 AACACTAGATCTCGCCATCAC 57.555 47.619 0.00 0.00 0.00 3.06
230 231 3.570125 CCTAACACTAGATCTCGCCATCA 59.430 47.826 0.00 0.00 0.00 3.07
231 232 3.612955 GCCTAACACTAGATCTCGCCATC 60.613 52.174 0.00 0.00 0.00 3.51
264 265 8.190888 AGTCGTCATCATTGAACTCTTTAATC 57.809 34.615 0.00 0.00 32.48 1.75
272 273 4.696899 TCGTAGTCGTCATCATTGAACT 57.303 40.909 0.00 0.00 38.33 3.01
282 283 1.012086 CCCTCGAATCGTAGTCGTCA 58.988 55.000 1.52 0.00 39.52 4.35
285 286 0.591741 GTGCCCTCGAATCGTAGTCG 60.592 60.000 1.52 0.00 39.88 4.18
290 291 1.134560 GAACTAGTGCCCTCGAATCGT 59.865 52.381 1.52 0.00 0.00 3.73
294 295 2.693591 CCTATGAACTAGTGCCCTCGAA 59.306 50.000 0.00 0.00 0.00 3.71
297 298 1.694696 CCCCTATGAACTAGTGCCCTC 59.305 57.143 0.00 0.00 0.00 4.30
302 303 3.470709 CACATGCCCCTATGAACTAGTG 58.529 50.000 0.00 0.00 0.00 2.74
303 304 2.158755 GCACATGCCCCTATGAACTAGT 60.159 50.000 0.00 0.00 34.31 2.57
304 305 2.158769 TGCACATGCCCCTATGAACTAG 60.159 50.000 0.49 0.00 41.18 2.57
314 316 0.609662 AGTTTTCATGCACATGCCCC 59.390 50.000 5.73 0.00 41.18 5.80
326 328 7.714703 TGTCAATGACATCAATGAAGTTTTCA 58.285 30.769 12.63 0.00 39.81 2.69
327 329 8.578308 TTGTCAATGACATCAATGAAGTTTTC 57.422 30.769 17.48 0.00 42.40 2.29
340 342 5.563592 TCAGAATGACCTTGTCAATGACAT 58.436 37.500 17.48 1.89 45.96 3.06
358 360 3.055819 GCTCACCCATACAAGAGTCAGAA 60.056 47.826 0.00 0.00 0.00 3.02
366 368 1.945394 GCATGAGCTCACCCATACAAG 59.055 52.381 20.97 1.90 37.91 3.16
368 370 3.786656 GCATGAGCTCACCCATACA 57.213 52.632 20.97 0.00 37.91 2.29
391 415 3.372730 CCAATGGCCACCACGGTG 61.373 66.667 8.16 9.36 45.02 4.94
392 416 2.917897 ATCCAATGGCCACCACGGT 61.918 57.895 8.16 0.00 35.80 4.83
393 417 2.044053 ATCCAATGGCCACCACGG 60.044 61.111 8.16 6.38 35.80 4.94
394 418 2.417257 CCATCCAATGGCCACCACG 61.417 63.158 8.16 0.00 44.70 4.94
407 431 5.859205 AAAATTAGCTCCATGAACCATCC 57.141 39.130 0.00 0.00 0.00 3.51
476 506 6.639686 GCGACACTTATTATTGATCGGAAGTA 59.360 38.462 0.00 0.00 0.00 2.24
477 507 5.462398 GCGACACTTATTATTGATCGGAAGT 59.538 40.000 0.00 0.00 0.00 3.01
482 512 3.734231 ACCGCGACACTTATTATTGATCG 59.266 43.478 8.23 0.00 0.00 3.69
487 517 5.866335 TCAAAACCGCGACACTTATTATT 57.134 34.783 8.23 0.00 0.00 1.40
546 576 8.896744 CACTGATCTATTGCCTCTGATTTAAAA 58.103 33.333 0.00 0.00 0.00 1.52
547 577 8.049117 ACACTGATCTATTGCCTCTGATTTAAA 58.951 33.333 0.00 0.00 0.00 1.52
548 578 7.568349 ACACTGATCTATTGCCTCTGATTTAA 58.432 34.615 0.00 0.00 0.00 1.52
549 579 7.070447 AGACACTGATCTATTGCCTCTGATTTA 59.930 37.037 0.00 0.00 0.00 1.40
550 580 5.999044 ACACTGATCTATTGCCTCTGATTT 58.001 37.500 0.00 0.00 0.00 2.17
593 623 9.940166 CTTTAAACTACGGAGTGTTGTATTTTT 57.060 29.630 0.00 0.00 45.73 1.94
597 627 6.367969 CAGCTTTAAACTACGGAGTGTTGTAT 59.632 38.462 0.00 0.00 45.73 2.29
605 635 6.331061 AGTATCACAGCTTTAAACTACGGAG 58.669 40.000 0.00 0.00 0.00 4.63
615 645 8.826710 CGATCCAAAATAAGTATCACAGCTTTA 58.173 33.333 0.00 0.00 0.00 1.85
616 646 7.201732 CCGATCCAAAATAAGTATCACAGCTTT 60.202 37.037 0.00 0.00 0.00 3.51
617 647 6.260936 CCGATCCAAAATAAGTATCACAGCTT 59.739 38.462 0.00 0.00 0.00 3.74
619 649 5.758296 TCCGATCCAAAATAAGTATCACAGC 59.242 40.000 0.00 0.00 0.00 4.40
620 650 7.969536 ATCCGATCCAAAATAAGTATCACAG 57.030 36.000 0.00 0.00 0.00 3.66
621 651 9.839817 TTTATCCGATCCAAAATAAGTATCACA 57.160 29.630 0.00 0.00 0.00 3.58
648 679 7.663043 ATCTTTCTAAAAGAGACGGGTCTAT 57.337 36.000 0.48 0.00 40.61 1.98
651 682 6.628185 TGTATCTTTCTAAAAGAGACGGGTC 58.372 40.000 17.46 0.00 40.35 4.46
653 684 6.872020 TGTTGTATCTTTCTAAAAGAGACGGG 59.128 38.462 17.46 0.00 40.35 5.28
664 695 8.762645 AGATGGAGTGAATGTTGTATCTTTCTA 58.237 33.333 0.00 0.00 0.00 2.10
665 696 7.628234 AGATGGAGTGAATGTTGTATCTTTCT 58.372 34.615 0.00 0.00 0.00 2.52
666 697 7.550551 TGAGATGGAGTGAATGTTGTATCTTTC 59.449 37.037 0.00 0.00 0.00 2.62
670 710 6.820656 ACTTGAGATGGAGTGAATGTTGTATC 59.179 38.462 0.00 0.00 0.00 2.24
682 722 2.183679 GGGTCAGACTTGAGATGGAGT 58.816 52.381 0.00 0.00 32.98 3.85
691 731 0.321564 TGCCGATTGGGTCAGACTTG 60.322 55.000 0.00 0.00 38.44 3.16
707 747 4.941263 TGTCAAGTGGTTAGTATGATTGCC 59.059 41.667 0.00 0.00 0.00 4.52
709 749 6.402550 GCTGTGTCAAGTGGTTAGTATGATTG 60.403 42.308 0.00 0.00 0.00 2.67
715 755 4.409718 TTGCTGTGTCAAGTGGTTAGTA 57.590 40.909 0.00 0.00 0.00 1.82
793 1725 2.930562 AGGGGAGTGGTGAGGCAC 60.931 66.667 0.00 0.00 0.00 5.01
814 1746 2.354303 CGTTCCAATACTAGGGTGCACA 60.354 50.000 20.43 0.00 0.00 4.57
820 1752 2.112998 TCACCCGTTCCAATACTAGGG 58.887 52.381 0.00 0.00 44.17 3.53
970 1931 1.001158 GCTAGCGGCTTCTCGTATCTT 60.001 52.381 8.26 0.00 38.06 2.40
971 1932 0.594110 GCTAGCGGCTTCTCGTATCT 59.406 55.000 8.26 0.00 38.06 1.98
1594 2561 4.162690 GATGGGCTCGGCGAAGGT 62.163 66.667 12.13 0.00 0.00 3.50
1635 2602 3.305516 CCCTGCACCTGGCCAAAC 61.306 66.667 7.01 0.00 43.89 2.93
2223 3374 4.489810 ACACATGAAAAGAAAAACGCACA 58.510 34.783 0.00 0.00 0.00 4.57
2338 3496 9.232473 AGTTTAGAAATTAGAACAGGACCATTC 57.768 33.333 0.00 0.00 0.00 2.67
2444 3615 7.377766 ACATCATATACATCCGTAAAATGGC 57.622 36.000 0.00 0.00 31.05 4.40
2453 3626 6.633856 TCAATCTGGACATCATATACATCCG 58.366 40.000 0.00 0.00 31.65 4.18
2631 3804 4.879545 ACGACCGATAGCCAATTAAAATGT 59.120 37.500 0.00 0.00 0.00 2.71
2681 3855 9.710979 TTCGATAGCCAATTAAAACGATAAAAG 57.289 29.630 0.00 0.00 0.00 2.27
2698 3872 5.931441 ATGCTTTAGTTGATTCGATAGCC 57.069 39.130 0.00 0.00 0.00 3.93
2759 3933 4.533311 TGTTTAGGGGGTCTACCAAAGTAG 59.467 45.833 0.81 0.00 46.34 2.57
2760 3934 4.286808 GTGTTTAGGGGGTCTACCAAAGTA 59.713 45.833 0.81 0.00 42.91 2.24
2761 3935 3.073503 GTGTTTAGGGGGTCTACCAAAGT 59.926 47.826 0.81 0.00 42.91 2.66
2762 3936 3.073356 TGTGTTTAGGGGGTCTACCAAAG 59.927 47.826 0.81 0.00 42.91 2.77
2763 3937 3.054576 TGTGTTTAGGGGGTCTACCAAA 58.945 45.455 0.81 0.00 42.91 3.28
2764 3938 2.703947 TGTGTTTAGGGGGTCTACCAA 58.296 47.619 0.81 0.00 42.91 3.67
2765 3939 2.419457 TGTGTTTAGGGGGTCTACCA 57.581 50.000 0.81 0.00 42.91 3.25
2766 3940 5.440207 TTAATGTGTTTAGGGGGTCTACC 57.560 43.478 0.00 0.00 39.11 3.18
2767 3941 5.826208 CCATTAATGTGTTTAGGGGGTCTAC 59.174 44.000 14.25 0.00 0.00 2.59
2768 3942 5.493250 ACCATTAATGTGTTTAGGGGGTCTA 59.507 40.000 14.25 0.00 0.00 2.59
2769 3943 4.293901 ACCATTAATGTGTTTAGGGGGTCT 59.706 41.667 14.25 0.00 0.00 3.85
2770 3944 4.606210 ACCATTAATGTGTTTAGGGGGTC 58.394 43.478 14.25 0.00 0.00 4.46
2771 3945 4.685513 ACCATTAATGTGTTTAGGGGGT 57.314 40.909 14.25 0.00 0.00 4.95
2772 3946 5.020132 TCAACCATTAATGTGTTTAGGGGG 58.980 41.667 14.25 5.76 0.00 5.40
2773 3947 5.949354 TCTCAACCATTAATGTGTTTAGGGG 59.051 40.000 19.68 11.49 0.00 4.79
2774 3948 7.645058 ATCTCAACCATTAATGTGTTTAGGG 57.355 36.000 19.68 11.94 0.00 3.53
2777 3951 8.962679 GGGTAATCTCAACCATTAATGTGTTTA 58.037 33.333 14.25 8.52 38.87 2.01
2778 3952 7.093509 GGGGTAATCTCAACCATTAATGTGTTT 60.094 37.037 14.25 2.07 38.87 2.83
2779 3953 6.379988 GGGGTAATCTCAACCATTAATGTGTT 59.620 38.462 14.25 13.76 38.87 3.32
2780 3954 5.891551 GGGGTAATCTCAACCATTAATGTGT 59.108 40.000 14.25 8.87 38.87 3.72
2781 3955 5.008613 CGGGGTAATCTCAACCATTAATGTG 59.991 44.000 14.25 7.15 38.87 3.21
2782 3956 5.130350 CGGGGTAATCTCAACCATTAATGT 58.870 41.667 14.25 0.18 38.87 2.71
2783 3957 5.130350 ACGGGGTAATCTCAACCATTAATG 58.870 41.667 8.58 8.58 38.87 1.90
2784 3958 5.382664 ACGGGGTAATCTCAACCATTAAT 57.617 39.130 0.00 0.00 38.87 1.40
2785 3959 4.847990 ACGGGGTAATCTCAACCATTAA 57.152 40.909 0.00 0.00 38.87 1.40
2786 3960 4.101430 GGTACGGGGTAATCTCAACCATTA 59.899 45.833 0.00 0.00 38.87 1.90
2787 3961 3.118149 GGTACGGGGTAATCTCAACCATT 60.118 47.826 0.00 0.00 38.87 3.16
2788 3962 2.436911 GGTACGGGGTAATCTCAACCAT 59.563 50.000 0.00 0.00 38.87 3.55
2789 3963 1.832998 GGTACGGGGTAATCTCAACCA 59.167 52.381 0.00 0.00 38.87 3.67
2790 3964 2.113807 AGGTACGGGGTAATCTCAACC 58.886 52.381 0.00 0.00 36.19 3.77
2791 3965 3.900966 AAGGTACGGGGTAATCTCAAC 57.099 47.619 0.00 0.00 0.00 3.18
2792 3966 4.286549 TGAAAAGGTACGGGGTAATCTCAA 59.713 41.667 0.00 0.00 0.00 3.02
2793 3967 3.839490 TGAAAAGGTACGGGGTAATCTCA 59.161 43.478 0.00 0.00 0.00 3.27
2794 3968 4.476628 TGAAAAGGTACGGGGTAATCTC 57.523 45.455 0.00 0.00 0.00 2.75
2795 3969 6.564557 TTATGAAAAGGTACGGGGTAATCT 57.435 37.500 0.00 0.00 0.00 2.40
2796 3970 8.370182 TCTATTATGAAAAGGTACGGGGTAATC 58.630 37.037 0.00 0.00 0.00 1.75
2797 3971 8.266363 TCTATTATGAAAAGGTACGGGGTAAT 57.734 34.615 0.00 0.00 0.00 1.89
2798 3972 7.564660 TCTCTATTATGAAAAGGTACGGGGTAA 59.435 37.037 0.00 0.00 0.00 2.85
2799 3973 7.068702 TCTCTATTATGAAAAGGTACGGGGTA 58.931 38.462 0.00 0.00 0.00 3.69
2800 3974 5.901276 TCTCTATTATGAAAAGGTACGGGGT 59.099 40.000 0.00 0.00 0.00 4.95
2801 3975 6.415206 TCTCTATTATGAAAAGGTACGGGG 57.585 41.667 0.00 0.00 0.00 5.73
2802 3976 9.420551 GTATTCTCTATTATGAAAAGGTACGGG 57.579 37.037 0.00 0.00 0.00 5.28
2803 3977 9.125906 CGTATTCTCTATTATGAAAAGGTACGG 57.874 37.037 0.00 0.00 30.47 4.02
2804 3978 9.888878 TCGTATTCTCTATTATGAAAAGGTACG 57.111 33.333 0.00 0.00 32.98 3.67
2807 3981 9.712305 CCATCGTATTCTCTATTATGAAAAGGT 57.288 33.333 0.00 0.00 0.00 3.50
2808 3982 9.712305 ACCATCGTATTCTCTATTATGAAAAGG 57.288 33.333 0.00 0.00 0.00 3.11
2861 4035 5.163513 CGCTCGGTACCTAGTTTCTAAAAA 58.836 41.667 14.48 0.00 0.00 1.94
2862 4036 4.380867 CCGCTCGGTACCTAGTTTCTAAAA 60.381 45.833 14.48 0.00 0.00 1.52
2863 4037 3.129287 CCGCTCGGTACCTAGTTTCTAAA 59.871 47.826 14.48 0.00 0.00 1.85
2864 4038 2.684881 CCGCTCGGTACCTAGTTTCTAA 59.315 50.000 14.48 0.00 0.00 2.10
2865 4039 2.292267 CCGCTCGGTACCTAGTTTCTA 58.708 52.381 14.48 0.00 0.00 2.10
2866 4040 1.101331 CCGCTCGGTACCTAGTTTCT 58.899 55.000 14.48 0.00 0.00 2.52
2867 4041 0.101939 CCCGCTCGGTACCTAGTTTC 59.898 60.000 14.48 0.00 0.00 2.78
2868 4042 1.325476 CCCCGCTCGGTACCTAGTTT 61.325 60.000 14.48 0.00 0.00 2.66
2869 4043 1.755783 CCCCGCTCGGTACCTAGTT 60.756 63.158 14.48 0.00 0.00 2.24
2870 4044 2.004408 ATCCCCGCTCGGTACCTAGT 62.004 60.000 14.48 0.00 0.00 2.57
2871 4045 0.037303 TATCCCCGCTCGGTACCTAG 59.963 60.000 10.90 9.94 0.00 3.02
2872 4046 0.250901 GTATCCCCGCTCGGTACCTA 60.251 60.000 10.90 0.00 0.00 3.08
2873 4047 1.530183 GTATCCCCGCTCGGTACCT 60.530 63.158 10.90 0.00 0.00 3.08
2874 4048 2.912624 CGTATCCCCGCTCGGTACC 61.913 68.421 0.16 0.16 0.00 3.34
2875 4049 2.641559 CGTATCCCCGCTCGGTAC 59.358 66.667 7.59 2.97 0.00 3.34
2876 4050 2.595463 CCGTATCCCCGCTCGGTA 60.595 66.667 7.59 0.00 38.45 4.02
2878 4052 4.280494 CACCGTATCCCCGCTCGG 62.280 72.222 0.48 0.48 46.98 4.63
2879 4053 4.944372 GCACCGTATCCCCGCTCG 62.944 72.222 0.00 0.00 0.00 5.03
2880 4054 1.741327 TAAGCACCGTATCCCCGCTC 61.741 60.000 0.00 0.00 31.17 5.03
2881 4055 1.332144 TTAAGCACCGTATCCCCGCT 61.332 55.000 0.00 0.00 33.45 5.52
2882 4056 1.144496 TTAAGCACCGTATCCCCGC 59.856 57.895 0.00 0.00 0.00 6.13
2883 4057 0.462789 AGTTAAGCACCGTATCCCCG 59.537 55.000 0.00 0.00 0.00 5.73
2884 4058 1.474498 CCAGTTAAGCACCGTATCCCC 60.474 57.143 0.00 0.00 0.00 4.81
2885 4059 1.474498 CCCAGTTAAGCACCGTATCCC 60.474 57.143 0.00 0.00 0.00 3.85
2886 4060 1.208776 ACCCAGTTAAGCACCGTATCC 59.791 52.381 0.00 0.00 0.00 2.59
2887 4061 2.676342 CAACCCAGTTAAGCACCGTATC 59.324 50.000 0.00 0.00 0.00 2.24
2888 4062 2.617021 CCAACCCAGTTAAGCACCGTAT 60.617 50.000 0.00 0.00 0.00 3.06
2889 4063 1.270947 CCAACCCAGTTAAGCACCGTA 60.271 52.381 0.00 0.00 0.00 4.02
2890 4064 0.536460 CCAACCCAGTTAAGCACCGT 60.536 55.000 0.00 0.00 0.00 4.83
2891 4065 1.862602 GCCAACCCAGTTAAGCACCG 61.863 60.000 0.00 0.00 0.00 4.94
2892 4066 1.532604 GGCCAACCCAGTTAAGCACC 61.533 60.000 0.00 0.00 0.00 5.01
2893 4067 1.964448 GGCCAACCCAGTTAAGCAC 59.036 57.895 0.00 0.00 0.00 4.40
2894 4068 4.511838 GGCCAACCCAGTTAAGCA 57.488 55.556 0.00 0.00 0.00 3.91
2919 4093 2.202932 ATAGCAAGTGGCCTCGCG 60.203 61.111 3.32 0.00 46.50 5.87
2920 4094 1.144936 AGATAGCAAGTGGCCTCGC 59.855 57.895 3.32 0.00 46.50 5.03
2921 4095 0.461548 TCAGATAGCAAGTGGCCTCG 59.538 55.000 3.32 0.00 46.50 4.63
2922 4096 2.237393 CTCAGATAGCAAGTGGCCTC 57.763 55.000 3.32 0.00 46.50 4.70
2933 4107 0.593518 CCTGACGCACGCTCAGATAG 60.594 60.000 18.00 4.63 37.90 2.08
2934 4108 1.313091 ACCTGACGCACGCTCAGATA 61.313 55.000 18.00 0.00 37.90 1.98
2935 4109 1.313091 TACCTGACGCACGCTCAGAT 61.313 55.000 18.00 8.64 37.90 2.90
2936 4110 1.520600 TTACCTGACGCACGCTCAGA 61.521 55.000 18.00 3.50 37.90 3.27
2937 4111 0.666274 TTTACCTGACGCACGCTCAG 60.666 55.000 12.59 12.59 35.78 3.35
2938 4112 0.249531 TTTTACCTGACGCACGCTCA 60.250 50.000 0.00 0.00 0.00 4.26
2939 4113 0.863144 TTTTTACCTGACGCACGCTC 59.137 50.000 0.00 0.00 0.00 5.03
2940 4114 1.463444 GATTTTTACCTGACGCACGCT 59.537 47.619 0.00 0.00 0.00 5.07
2941 4115 1.465187 GGATTTTTACCTGACGCACGC 60.465 52.381 0.00 0.00 0.00 5.34
2942 4116 2.073816 AGGATTTTTACCTGACGCACG 58.926 47.619 0.00 0.00 36.30 5.34
2950 4124 8.966155 TTCTTATTTTCCCAGGATTTTTACCT 57.034 30.769 0.00 0.00 38.40 3.08
2957 4131 9.782900 TCCTATTTTTCTTATTTTCCCAGGATT 57.217 29.630 0.00 0.00 0.00 3.01
2958 4132 9.426534 CTCCTATTTTTCTTATTTTCCCAGGAT 57.573 33.333 0.00 0.00 0.00 3.24
2959 4133 7.839200 CCTCCTATTTTTCTTATTTTCCCAGGA 59.161 37.037 0.00 0.00 0.00 3.86
2960 4134 7.069950 CCCTCCTATTTTTCTTATTTTCCCAGG 59.930 40.741 0.00 0.00 0.00 4.45
2961 4135 7.839200 TCCCTCCTATTTTTCTTATTTTCCCAG 59.161 37.037 0.00 0.00 0.00 4.45
2962 4136 7.714500 TCCCTCCTATTTTTCTTATTTTCCCA 58.286 34.615 0.00 0.00 0.00 4.37
2963 4137 8.783660 ATCCCTCCTATTTTTCTTATTTTCCC 57.216 34.615 0.00 0.00 0.00 3.97
2964 4138 8.568794 CGATCCCTCCTATTTTTCTTATTTTCC 58.431 37.037 0.00 0.00 0.00 3.13
2965 4139 9.338622 TCGATCCCTCCTATTTTTCTTATTTTC 57.661 33.333 0.00 0.00 0.00 2.29
2966 4140 9.695155 TTCGATCCCTCCTATTTTTCTTATTTT 57.305 29.630 0.00 0.00 0.00 1.82
2967 4141 9.695155 TTTCGATCCCTCCTATTTTTCTTATTT 57.305 29.630 0.00 0.00 0.00 1.40
2968 4142 9.868160 ATTTCGATCCCTCCTATTTTTCTTATT 57.132 29.630 0.00 0.00 0.00 1.40
2969 4143 9.508642 GATTTCGATCCCTCCTATTTTTCTTAT 57.491 33.333 0.00 0.00 0.00 1.73
2970 4144 8.491134 TGATTTCGATCCCTCCTATTTTTCTTA 58.509 33.333 0.00 0.00 0.00 2.10
2971 4145 7.346471 TGATTTCGATCCCTCCTATTTTTCTT 58.654 34.615 0.00 0.00 0.00 2.52
2972 4146 6.900194 TGATTTCGATCCCTCCTATTTTTCT 58.100 36.000 0.00 0.00 0.00 2.52
2973 4147 7.751768 ATGATTTCGATCCCTCCTATTTTTC 57.248 36.000 0.00 0.00 0.00 2.29
2974 4148 9.067986 GTTATGATTTCGATCCCTCCTATTTTT 57.932 33.333 0.00 0.00 0.00 1.94
2975 4149 7.665974 GGTTATGATTTCGATCCCTCCTATTTT 59.334 37.037 0.00 0.00 0.00 1.82
2976 4150 7.017651 AGGTTATGATTTCGATCCCTCCTATTT 59.982 37.037 0.00 0.00 0.00 1.40
2977 4151 6.502158 AGGTTATGATTTCGATCCCTCCTATT 59.498 38.462 0.00 0.00 0.00 1.73
2978 4152 6.026186 AGGTTATGATTTCGATCCCTCCTAT 58.974 40.000 0.00 0.00 0.00 2.57
2979 4153 5.403512 AGGTTATGATTTCGATCCCTCCTA 58.596 41.667 0.00 0.00 0.00 2.94
2980 4154 4.235372 AGGTTATGATTTCGATCCCTCCT 58.765 43.478 0.00 0.00 0.00 3.69
2981 4155 4.570930 GAGGTTATGATTTCGATCCCTCC 58.429 47.826 0.00 0.00 32.83 4.30
2982 4156 4.238514 CGAGGTTATGATTTCGATCCCTC 58.761 47.826 0.00 0.00 35.19 4.30
2983 4157 3.641906 ACGAGGTTATGATTTCGATCCCT 59.358 43.478 0.00 0.00 36.89 4.20
2984 4158 3.988517 GACGAGGTTATGATTTCGATCCC 59.011 47.826 0.00 0.00 36.89 3.85
2985 4159 3.988517 GGACGAGGTTATGATTTCGATCC 59.011 47.826 0.00 0.36 36.89 3.36
2986 4160 4.872664 AGGACGAGGTTATGATTTCGATC 58.127 43.478 0.00 0.00 36.89 3.69
2987 4161 4.585162 AGAGGACGAGGTTATGATTTCGAT 59.415 41.667 0.00 0.00 36.89 3.59
2988 4162 3.952323 AGAGGACGAGGTTATGATTTCGA 59.048 43.478 0.00 0.00 36.89 3.71
2989 4163 4.308899 AGAGGACGAGGTTATGATTTCG 57.691 45.455 0.00 0.00 38.88 3.46
2990 4164 7.039882 TGTTTAGAGGACGAGGTTATGATTTC 58.960 38.462 0.00 0.00 0.00 2.17
2991 4165 6.942976 TGTTTAGAGGACGAGGTTATGATTT 58.057 36.000 0.00 0.00 0.00 2.17
2992 4166 6.540438 TGTTTAGAGGACGAGGTTATGATT 57.460 37.500 0.00 0.00 0.00 2.57
2993 4167 6.540438 TTGTTTAGAGGACGAGGTTATGAT 57.460 37.500 0.00 0.00 0.00 2.45
2994 4168 5.623824 GCTTGTTTAGAGGACGAGGTTATGA 60.624 44.000 0.00 0.00 0.00 2.15
2995 4169 4.567159 GCTTGTTTAGAGGACGAGGTTATG 59.433 45.833 0.00 0.00 0.00 1.90
2996 4170 4.677250 CGCTTGTTTAGAGGACGAGGTTAT 60.677 45.833 0.00 0.00 0.00 1.89
2997 4171 3.366679 CGCTTGTTTAGAGGACGAGGTTA 60.367 47.826 0.00 0.00 0.00 2.85
2998 4172 2.609737 CGCTTGTTTAGAGGACGAGGTT 60.610 50.000 0.00 0.00 0.00 3.50
2999 4173 1.067776 CGCTTGTTTAGAGGACGAGGT 60.068 52.381 0.00 0.00 0.00 3.85
3000 4174 1.630148 CGCTTGTTTAGAGGACGAGG 58.370 55.000 0.00 0.00 0.00 4.63
3001 4175 1.201647 TCCGCTTGTTTAGAGGACGAG 59.798 52.381 0.00 0.00 46.50 4.18
3002 4176 1.250328 TCCGCTTGTTTAGAGGACGA 58.750 50.000 0.00 0.00 46.50 4.20
3003 4177 3.806591 TCCGCTTGTTTAGAGGACG 57.193 52.632 0.00 0.00 46.50 4.79
3006 4180 2.076863 CTGGTTCCGCTTGTTTAGAGG 58.923 52.381 0.00 0.00 44.56 3.69
3007 4181 1.464997 GCTGGTTCCGCTTGTTTAGAG 59.535 52.381 0.00 0.00 0.00 2.43
3008 4182 1.519408 GCTGGTTCCGCTTGTTTAGA 58.481 50.000 0.00 0.00 0.00 2.10
3009 4183 0.521735 GGCTGGTTCCGCTTGTTTAG 59.478 55.000 5.89 0.00 0.00 1.85
3010 4184 0.179015 TGGCTGGTTCCGCTTGTTTA 60.179 50.000 5.89 0.00 0.00 2.01
3011 4185 1.454847 TGGCTGGTTCCGCTTGTTT 60.455 52.632 5.89 0.00 0.00 2.83
3012 4186 2.193536 GTGGCTGGTTCCGCTTGTT 61.194 57.895 5.89 0.00 33.93 2.83
3013 4187 2.594592 GTGGCTGGTTCCGCTTGT 60.595 61.111 5.89 0.00 33.93 3.16
3014 4188 2.281761 AGTGGCTGGTTCCGCTTG 60.282 61.111 0.00 0.00 44.01 4.01
3015 4189 2.032681 GAGTGGCTGGTTCCGCTT 59.967 61.111 0.00 0.00 46.22 4.68
3017 4191 4.373116 TCGAGTGGCTGGTTCCGC 62.373 66.667 0.00 0.00 36.90 5.54
3018 4192 1.592400 TAGTCGAGTGGCTGGTTCCG 61.592 60.000 2.10 0.00 0.00 4.30
3019 4193 0.108756 GTAGTCGAGTGGCTGGTTCC 60.109 60.000 2.10 0.00 0.00 3.62
3020 4194 0.456312 CGTAGTCGAGTGGCTGGTTC 60.456 60.000 2.10 0.00 39.71 3.62
3021 4195 1.585006 CGTAGTCGAGTGGCTGGTT 59.415 57.895 2.10 0.00 39.71 3.67
3022 4196 2.991076 GCGTAGTCGAGTGGCTGGT 61.991 63.158 2.10 0.00 39.71 4.00
3023 4197 1.374343 TAGCGTAGTCGAGTGGCTGG 61.374 60.000 23.20 3.16 39.71 4.85
3024 4198 0.450583 TTAGCGTAGTCGAGTGGCTG 59.549 55.000 23.20 5.10 39.71 4.85
3025 4199 0.733729 CTTAGCGTAGTCGAGTGGCT 59.266 55.000 20.05 20.05 39.71 4.75
3026 4200 0.731417 TCTTAGCGTAGTCGAGTGGC 59.269 55.000 2.10 6.52 39.71 5.01
3027 4201 1.268133 GCTCTTAGCGTAGTCGAGTGG 60.268 57.143 2.10 0.00 39.71 4.00
3028 4202 1.397343 TGCTCTTAGCGTAGTCGAGTG 59.603 52.381 2.10 0.00 46.26 3.51
3029 4203 1.735386 TGCTCTTAGCGTAGTCGAGT 58.265 50.000 0.00 0.00 46.26 4.18
3030 4204 2.546368 AGATGCTCTTAGCGTAGTCGAG 59.454 50.000 0.00 0.00 46.26 4.04
3031 4205 2.544686 GAGATGCTCTTAGCGTAGTCGA 59.455 50.000 0.00 0.00 46.26 4.20
3032 4206 2.350007 GGAGATGCTCTTAGCGTAGTCG 60.350 54.545 0.00 0.00 46.26 4.18
3033 4207 2.619177 TGGAGATGCTCTTAGCGTAGTC 59.381 50.000 0.00 0.00 46.26 2.59
3034 4208 2.656002 TGGAGATGCTCTTAGCGTAGT 58.344 47.619 0.00 0.00 46.26 2.73
3035 4209 3.181486 TGTTGGAGATGCTCTTAGCGTAG 60.181 47.826 0.00 0.00 46.26 3.51
3036 4210 2.758423 TGTTGGAGATGCTCTTAGCGTA 59.242 45.455 0.00 0.00 46.26 4.42
3037 4211 1.550524 TGTTGGAGATGCTCTTAGCGT 59.449 47.619 0.00 0.00 46.26 5.07
3038 4212 2.200067 CTGTTGGAGATGCTCTTAGCG 58.800 52.381 0.00 0.00 46.26 4.26
3039 4213 3.194062 GACTGTTGGAGATGCTCTTAGC 58.806 50.000 0.00 0.00 42.82 3.09
3040 4214 3.443037 CGACTGTTGGAGATGCTCTTAG 58.557 50.000 0.00 0.00 0.00 2.18
3041 4215 2.417379 GCGACTGTTGGAGATGCTCTTA 60.417 50.000 0.00 0.00 0.00 2.10
3042 4216 1.674221 GCGACTGTTGGAGATGCTCTT 60.674 52.381 0.00 0.00 0.00 2.85
3043 4217 0.108424 GCGACTGTTGGAGATGCTCT 60.108 55.000 0.00 0.00 0.00 4.09
3044 4218 1.416813 CGCGACTGTTGGAGATGCTC 61.417 60.000 0.00 0.00 0.00 4.26
3045 4219 1.446792 CGCGACTGTTGGAGATGCT 60.447 57.895 0.00 0.00 0.00 3.79
3046 4220 3.084579 CGCGACTGTTGGAGATGC 58.915 61.111 0.00 0.00 0.00 3.91
3047 4221 2.456119 GGCGCGACTGTTGGAGATG 61.456 63.158 12.10 0.00 0.00 2.90
3048 4222 1.320344 TAGGCGCGACTGTTGGAGAT 61.320 55.000 28.40 0.00 0.00 2.75
3049 4223 1.320344 ATAGGCGCGACTGTTGGAGA 61.320 55.000 28.40 1.55 0.00 3.71
3050 4224 0.384309 TATAGGCGCGACTGTTGGAG 59.616 55.000 28.40 0.00 0.00 3.86
3051 4225 1.037493 ATATAGGCGCGACTGTTGGA 58.963 50.000 28.40 3.52 0.00 3.53
3052 4226 2.717580 TATATAGGCGCGACTGTTGG 57.282 50.000 28.40 0.00 0.00 3.77
3053 4227 2.408704 GCTTATATAGGCGCGACTGTTG 59.591 50.000 28.40 10.37 0.00 3.33
3054 4228 2.673833 GCTTATATAGGCGCGACTGTT 58.326 47.619 28.40 15.12 0.00 3.16
3055 4229 2.349297 GCTTATATAGGCGCGACTGT 57.651 50.000 28.40 22.84 0.00 3.55
3063 4237 3.384927 CGCGGCGCTTATATAGGC 58.615 61.111 30.54 6.77 0.00 3.93
3074 4248 0.179200 ACTAATTTTTCAGCGCGGCG 60.179 50.000 19.62 19.62 0.00 6.46
3075 4249 1.259316 CACTAATTTTTCAGCGCGGC 58.741 50.000 8.83 0.00 0.00 6.53
3076 4250 2.611974 ACACTAATTTTTCAGCGCGG 57.388 45.000 8.83 0.00 0.00 6.46
3077 4251 4.947077 AAAACACTAATTTTTCAGCGCG 57.053 36.364 0.00 0.00 0.00 6.86
3078 4252 4.897924 GCAAAAACACTAATTTTTCAGCGC 59.102 37.500 0.00 0.00 39.25 5.92
3079 4253 5.123029 CGCAAAAACACTAATTTTTCAGCG 58.877 37.500 11.45 11.45 42.38 5.18
3080 4254 4.897924 GCGCAAAAACACTAATTTTTCAGC 59.102 37.500 0.30 0.00 39.25 4.26
3081 4255 5.123029 CGCGCAAAAACACTAATTTTTCAG 58.877 37.500 8.75 0.00 39.25 3.02
3082 4256 4.549107 GCGCGCAAAAACACTAATTTTTCA 60.549 37.500 29.10 0.00 39.25 2.69
3083 4257 3.891975 GCGCGCAAAAACACTAATTTTTC 59.108 39.130 29.10 0.00 39.25 2.29
3084 4258 3.600460 CGCGCGCAAAAACACTAATTTTT 60.600 39.130 32.61 0.00 41.38 1.94
3085 4259 2.097637 CGCGCGCAAAAACACTAATTTT 60.098 40.909 32.61 0.00 33.13 1.82
3086 4260 1.450161 CGCGCGCAAAAACACTAATTT 59.550 42.857 32.61 0.00 0.00 1.82
3087 4261 1.049251 CGCGCGCAAAAACACTAATT 58.951 45.000 32.61 0.00 0.00 1.40
3088 4262 1.334288 GCGCGCGCAAAAACACTAAT 61.334 50.000 46.11 0.00 41.49 1.73
3089 4263 2.006587 GCGCGCGCAAAAACACTAA 61.007 52.632 46.11 0.00 41.49 2.24
3090 4264 2.426098 GCGCGCGCAAAAACACTA 60.426 55.556 46.11 0.00 41.49 2.74
3147 4321 1.067693 TGAATTAGATATGCGCCGCG 58.932 50.000 8.83 8.83 0.00 6.46
3148 4322 2.721797 CGTTGAATTAGATATGCGCCGC 60.722 50.000 4.18 0.00 0.00 6.53
3149 4323 2.721797 GCGTTGAATTAGATATGCGCCG 60.722 50.000 4.18 0.00 38.03 6.46
3150 4324 2.223144 TGCGTTGAATTAGATATGCGCC 59.777 45.455 4.18 0.00 42.45 6.53
3151 4325 3.218398 GTGCGTTGAATTAGATATGCGC 58.782 45.455 0.00 0.00 43.26 6.09
3152 4326 3.460357 CGTGCGTTGAATTAGATATGCG 58.540 45.455 0.00 0.00 0.00 4.73
3153 4327 3.363970 CCCGTGCGTTGAATTAGATATGC 60.364 47.826 0.00 0.00 0.00 3.14
3154 4328 4.389664 CCCGTGCGTTGAATTAGATATG 57.610 45.455 0.00 0.00 0.00 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.