>input_sequence_58505
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----------------------------------------------ATGAAGTTCCTGCCTTCCATAGCCGTCCTCCTAC
TCCTCTCCTGCTCCCTCGCGGCGGCCACGGTGCCGACCGGCACGATCGAGCGCGTGTCCAAGCAGCAGATCCTGGCTAGC
ATCCCGCCGGGCGGGCATGCCGGCCCGCCCGTTCTGTTCCTCACGTCTCCGTCCGGCAAGTACGCGGCCTACTTCGTGCG
CACCCACACCGCGCCGGGCGCCGGCGGGCTCGGCGCTGACTTTTGCTACGTCGAGGTGATGGCCGGTAGCGGCAAAGCGG
CCGAGGGCGGTGAAGGAGGCGGCGCTGCCGGGGGCGCGAGCGCGTGGGAGTCGGAGTGCCGGCCGGTGAGCACGGTGAAC
ACGTGCACCCTGCTCTTCTCGTGGCACGGGCTGGAGGTGTTCGACGGCAGCGAGGAGGTGTGGCACGGCGAGACCAACAC
CGACGGGACCAACTTCCTGCAGACGCTCGAGCTCGTGGACGACGGCGACATGCGCGTCCGCGACAAGAACGGCGAGCTCG
CGTGGCGGGCCAGCGACGAGCCGCGCCACGCGCAGCACTGCGGCGCGCCGGGGTCACCGGGCCTTGCGGCCGCGCTGCCG
ACCTTCGCCGAGCCCATCGGCGCGCACAGCAGCAATCTGCCGTTTGGCCAGGTGCAGGGCGGCAACGGCCACGCGGCCGA
GCTGCCGCAGGCGGCGGAGCTCGGGGACGGAGTTGTTCCAGGGGCCGGAGCAGGTGGCTTGGGCGACGGCTATGG-----
----------------------------------------------------------------CAT-------------
--------------------------------------------------------TGCACCGGCGGCAGGAGGAGTCGG
AGGTGTTGCC------CCAGGGGCAGGTGGCTTGGGCG------ACGGCTACGGCATTGCACCGGGGGCAGGAGGCGCCG
GAGGAGTTGGCCCGGGGGCAGGTGGCTTGGGCGACGGCTACGGCATTGCGCCGACGGTAGGAGGTGTTGCCGCGGGG---
---GCCAGGCCCTTCGGCGACGGCTACGGGATCGCACCGGGCGCCGGG-------------ACAGGAGCCTTCGGTGGCG
TCGGGGACGTTGCAGGACATGGTGAAGCGGCGACGGCGGC---C------GGTGGTGTCGCGGGAGTGGCAGGGTTCGGC
AGCCAGCCGCTG---GTGGACAACAGCCCCTACGACAGTGGAGCCTACAAGAGCAGCCGTGGGGCC---CATCTCGTGGC
CATTGGAGCTGCGGTGCTTGTCAGCGCCATGGCCGTGGGGTTCTGA----------------------------------
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-----------------------------
>chr5D_1_TraesCS5D01G339100
GGCAAGGAGGGGGAACCTTTGGTGTCTCGGATCTGACTTGTAGCTTATGTTATGGTTTTTTAGTCCTCGTAGGGGCAGTG
CTTGGGCAGATGGTGACACTTCATCTTCGAGTTGGTCTTCCAGGTTTTGATCCTCCTTGGACGATTCATCTGCCAAGATG
GAGTCGACAAAGCACAGATTCATGTCATCTCCATAGAGCGTCGAGGTTAGGGTTTAGCCTCGTACGTTCGTGATGGCGAG
ATCTAGTGTTAGGCACTTTAGATCGATTAAAGAGTTCAATGATGACGACTACGATTCGAGGGCACTAG-TTCATAGGGGC
ATGTGCATGAAAACTTCATTGATGTCATTGACAAGGTCATTCTGACTCTTGTATGGG----------------------T
GAGCTCATGCTCACCACCGTGGTGGCCATTGGATGGTTCATGGAGC------TAATTTTTATTATGTTTGAGGGGTTTTG
TATTTTAAATTAACTTCTATAATACTACTTCCGATCAATAATAAGTGTCGCGGTTTTGAAATTAACCCCGGTTTAATACC
GTGACACTTATTTTATTTTAAATCAGAGGCAATAGATCAGTGTCTTTTCAAAAAGAAAAGGAAAAAATACAACACTCCGT
AGTTTAAAGCTGTGAT-ACTTATTTTGGATCGGATAAAATAGACCCGTCTCTTTTAGA---------AAGATACAACATT
CACTCCATCTCAAGTCTGACCCAATCGGCAATCATA--------------------------------------------
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-------------------CTAACCACTTGACACAGCA---AAAAAGTGAAGCCAGATGCTTGTGGC-------------
-TGGCTCCCATGCCCCAACTATTCT------------AACCCAGGTGCCTCACCACTCCCCTGCTTGTGCACCCTAGTAT
TGGAACGGGTGATGTACTACTAACTCCATCCATGTCCTCTCTAACC-------ACTCGCCATCTCCTACTCCATCACCAC
CCTAACTATATGTACGCACC------TCATCATGCCACACCATGCAC----------------AACCACAGAGCAGCAGC
AAGCACACAAAAGA----TACGAGAAGCCGCT--AGCCAGCCAGCCATGAAGTTCCTGCCTTCCATAGCCGTCCTCCTAC
TCCTCTCCTGCTCCCTCGCGGCGGCCACGGTGCCGACCGGCACGATCGAGCGCGTGTCCAAGCAGCAGATCCTGGCTAGC
ATCCCGCCGGGCGGGCATGCCGGCCCGCCCGTTCTGTTCCTCACGTCTCCGTCCGGCAAGTACGCGGCCTACTTCGTGCG
CACCCACACCGCGCCGGGCGCCGGCGGGCTCGGCGCTGACTTTTGCTACGTCGAGGTGATGGCCGGTAGCGGCAAAGCGG
CCGAGGGCGGTGAAGGAGGCGGCGCTGCCGGGGGCGCGAGCGCGTGGGAGTCGGAGTGCCGGCCGGTGAGCACGGTGAAC
ACGTGCACCCTGCTCTTCTCGTGGCACGGGCTGGAGGTGTTCGACGGCAGCGAGGAGGTGTGGCACGGCGAGACCAACAC
CGACGGGACCAACTTCCTGCAGACGCTCGAGCTCGTGGACGACGGCGACATGCGCGTCCGCGACAAGAACGGCGAGCTCG
CGTGGCGGGCCAGCGACGAGCCGCGCCACGCGCAGCACTGCGGCGCGCCGGGGTCACCGGGCCTTGCGGCCGCGCTGCCG
ACCTTCGCCGAGCCCATCGGCGCGCACAGCAGCAATCTGCCGTTTGGCCAGGTGCAGGGCGGCAACGGCCACGCGGCCGA
GCTGCCGCAGGCGGCGGAGCTCGGGGACGGAGTTGTTCCAGGGGCCGGAGCAGGTGGCTTGGGCGACGGCTATGG-----
----------------------------------------------------------------CAT-------------
--------------------------------------------------------TGCACCGGCGGCAGGAGGAGTCGG
AGGTGTTGCC------CCAGGGGCAGGTGGCTTGGGCG------ACGGCTACGGCATTGCACCGGGGGCAGGAGGCGCCG
GAGGAGTTGGCCCGGGGGCAGGTGGCTTGGGCGACGGCTACGGCATTGCGCCGACGGTAGGAGGTGTTGCCGCGGGG---
---GCCAGGCCCTTCGGCGACGGCTACGGGATCGCACCGGGCGCCGGG-------------ACAGGAGCCTTCGGTGGCG
TCGGGGACGTTGCAGGACATGGTGAAGCGGCGACGGCGGC---C------GGTGGTGTCGCGGGAGTGGCAGGGTTCGGC
AGCCAGCCGCTG---GTGGACAACAGCCCCTACGACAGTGGAGCCTACAAGAGCAGCCGTGGGGCC---CATCTCGTGGC
CATTGGAGCTGCGGTGCTTGTCAGCGCCATGGCCGTGGGGTTCTGAACTTCTGATCGGGAAGACGGATTAGTGTGGCAGT
TTGGATATGCGCGTGTGCGTTTTTCTTTTCATGTGTTG--ATATTAGCCATAT---GCTGTGCTTGTGATTGTGGGTGGT
GCAAAATTTGAAGCTGTATTTGTGTGATTTGAGTAAAA-CTCAAAATTTAATGG-GAATGGTCCTGTTCTAATTTCTAAA
CTGGGTGCTTA----TCTCTAGAACTGCGA-TTCA--------AATACTCAAATAGGTAGATTGTACTTTGCTCATCCGT
CGGTGGGTTCAGTTGCC--ATTTTACGGATGTATATGATGTCCAGATTGAATTTTCAAAAACAATAGTAATAAATTAAAT
TCATTTACCATAATCAGAGGCCAATGTATATATGATCTCCTCTTGGTCCTACATTTGGCAATGAAACACCTTCAGCTCCG
TGAAATTTTACAAGCAAATCATGGGATTCTAGCAAGCTCCTGAACATTTTAATTGGCTATCGGTCGTTGCTTTATAATAT
AAAGCG-GGGAAACCTTTTATCGTTTTAATTGGCTATCGAATCAACTAAAGCATAAAATAGAAAAGAACCAACTAAAGCA
TAAAAAACACGTCTACTTTGGTAGACCCCCTAAACACATTAATGGTTGAGATTACCCCGTACCTTTTCATAATAGAGAAT
ACGATGGTCATTATAAAAGTATATCACCTCTGTTTTTTTAGAAACTAGGTACCGAGCGGGGATACGGTGCTTAACTGGGT
TGGCCCATCAGGCGCGAGGCCACTTGCTATCTGAGCGTGCGTCAGGTAAAAATCCTGGGAAAATAAGAAAAATAGGAGGG
ATCGAAATCATAACCTCGTCCTCTAAACAAGCGGAACCAGCCACTCGACTACGCTAAGAGCATCTCCAACAGTCGCGCCT
ATATAAGCGCCGCGCTGAAAAATTAGTGTTTTTGCGCGCGCTACCGCTCCGAGCGCTCCAGCGGAGGCGCAAAAACCGCG
CGCGGCGCATATCTAATTCAACGCACGGG
>chr5A_1
GGCAGG--GAGGGGAACCTTGGTGTCTTGGATCCGGCTAGTGGTTTAGCTTAGGGTTTTCTAGTCCTCGTATCGGCAGTG
CTTGGGCAAATGCTGGCATTTGGTCTTCGAGTTGGTCTTCTAGGTTTTGATCCTCCTTGGA---TTCGTCTGTCGTGATG
GAGTCGACGAAGCACAAATTCATGTCATCCCCTTAGAGCGTTGAGGTTAGGTTTAGCTCGTACGCGCA----ATGGCGAG
ATCTAGTGTTAGGCACTTTAGATCAATTAAAGGGTTCAATGACGATGACTGCGACTCTAGGGTGTTAGTTTCATACGGGC
ACGTGCACAAAAACTTCATTG-TGTCATTAGCAAGGTCAGTCTGACTTTGGTATGGGAGCGACGACCGCGACACTTCTGT
GAGCTCGTGCTCATGGTTGTGGTGGTCATTCGATGGTTTAGGGAGCTGGATGTAATTTTTATTATGTTTGAAGTGTTGTG
TATTTTAAATGAACTTTTACAATACGGCTTCTGATCCATAATAAGTGTCACGGTTTTTGAACTAACTCCAGTTCAATATT
GTGACACGTATTTTA-----AATCAGAGGGAGTAGATCCTTGTCTATTTAAAAAGAAAAG---AAAGTACAACATTCACT
CCCTAGTAAGCTGGAACACTTATTTTGGATCGGATGGATTATATCCGTGTCTTTCCAAAAAGAAAAGAAAATACAACATT
CCCTCCATCTAAAGTCTGACCCAATCAGGAATCACACTAAGAGTATCTACAGCCGCATATAATAAATATGACTCCTCAAA
CACCCGCGAACGCGCGGGCAGAGACCGAACACTCCTTAAATTAACACAACTGCATCGAGTTCGACAAAGAGCACGTCGGA
CGCCGCCTGCTCCTGCCGGAAGAACCGCCGGTTGTCCTCCTCATAAGCCTCATCCTGGATAGACTCCAGGATGGCCTACT
GCTCCGCCATCTCCGTGACTTGGGCAATGGCGTACTCCGCCTCCGCCTACCCCATGGTGAACCCAGGAGCAAGCTGCTCC
GCCTCCGGATCCGCCACTCCCATCGGTTCTGGCAGTTGCTCTCCCTCCTCCTCCTCTGGCTCCGACGAGTTCGGAGGCAG
ACCAACAGCAGTGCGGGCGGCACGCCTCATCTGGATCTCCTCCGTTGTCTGCCAGCGCTCTGGCGTCAGCATAACATACG
TCGTGATCTTGCGCCGGACCATGGCGATGCCGGAGAGCATGGGAGAGCGGGGGAGAGGAGACAGACGGATATGGGTGGCA
GCGCAGAGAAGGAGGAGGTGGATGAGCTAGGGTTGGGGGACGCCGGCCGGTTTAAATAGCCAAATTTGGCCTCGGCCAGC
GAGCCGGAATGACGCCACCCGACGTTCACACTACGACGACGGAGGAAGCGTCTGTCGGACCGCGAGGTTTCCGGGCGTTT
TTTGCATCAGACCTTATCGTTAGTCCTATGTGACGGTCCAGCCTGTGCCCGGACACCCCATATCCAACCAATCACCCGGG
CGTTTGATACTCGTTTGAGACGCCTGTCCGAGTCATATTTTTGTGACTAGGGACCGGATGGGCCGCCGGGTAGGCAGGTT
TGGGGCGGCTCTAGATGTTCTAACCACTCGTAGGGCACAACAAGAAGTGGAGCCAGATGCTTTGTGGCGGAATTCCCTTT
TTGGCTCCCATGCCCCAACTATTC-------------AACCCAGCTGCCTCACCACTCCCCTACTCGTGCAT----GTAT
TGGAACGGGTGATGTACCA---ACTCCATCCAGCTC--CTCTAACC-------ACTCGCCATCTCCTACTCCATCACCAC
CCCAACTATATGTACGCAGC------TCGTCATGCTACACCATGCACAACCACAACCACAAG-AACCACAGAGCAGCAGC
AAGCACCCAAGTGAGAAGTACGAGAAGCTGCTTGAGCTAGCCAGCCATGGAGCTCCTGCCTTCCATAGCCGTCTTCCTAC
TCCTCTCCTGCTCCCTCGCCGCAGCCATGGTGCCGGCCGGCACGATCGAGCGCGTGTCCAAGCAGCAGATCCTGGCTAGC
ATCCCGCCGGGCGGGCATGCCGGCCCGCCCGTTCTGTTCCTCACGTCTCCGTCCGGCAAGTACGCGGCTTACTTCGTGCG
CACCCACACCGCGCCGGGCGCCGGCGGGCTCGGCGCTGACTTTTGCTACGTCGAGGTGATGGCCGGTGGCGGCAAAGCGG
CCGAGGGCGGTGAAGGAGGCGGCGCTGCCGGGGGCGCGAGCGCATGGGAGTCGGAGTGCCGGCCGGTGAGCACGGTGAAC
ACGTGCACCCTGCTCTTCTCGTGGCACGGGCTGGAGGTGTTCGACGGCAGCGAGGAGGTGTGGCACGGCGAGACCAACAC
CGACGGGACCAACTTCCTGCAGACGCTCGAGCTCGTGGACGACGGCGACATGCGCGTCCGCGACAAGGACGGTGAGCTCG
CGTGGCGGGCCAGCGACGAGCCGCGCCACGCGCAGCACTGCGGCGCGCCGGGGTCACCGGGCCTTGCGGCCGCGCTGCCG
TCCTTCGCCGAGCCCATCGGCGCGCACAGCAGCAACCTGCCCTTCGGCCAGGTGCAGGGCGGCAACGGCCACGCGGCGGA
GCTGCCGCAGGCGGCGGAGCTCGGGGACGGAGTTGTTCCAGGGGCCGGAACAGGTGGCTTGGGTGACGGCTACGG-----
----------------------------------------------------------------CAT-------------
--------------------------------------------------------TGCACCGGCGGCAGGAGGAGTCGG
AGCTGTTGCC------CCAGGGGCAGGTGGTTTGGGCG------ACGGCTACGGCATTGCACCGGCGGTAGGAGGCGCCG
GAGGAGTTGGCCCGGGGGCAGGTGGCTTGGGCGACGGCTACGGCATTGCGCCAACGGTAGGAGGTGTTGCCGCGGGG---
---GCAGGGCCCTTCGGCGACGGCTACGGGATCGCACCGGGCGCCGGC-------------GCAGGAGCCTTCGGTGGTG
TCGGGGACGTTGCAGGACATGGTGAAGCGGCGACGGCGGC---C------GGCGGTGTCGCGGGAGTGGCAGGGTTCGGC
AGCCAGCCGCTG---GTGGACAACAGCCCCTACGACAGTGGAGCCTACAAGAGCAGCCGTGGGGCCGCCCATCTCGTGGC
CATTGGAGCTGCGGTGCTTGTCAGCGCCATGGCCGTGGGGTTCTGAACTTCTGATCGGGAAGACGGATTAGTGTGGCAGT
TTGGATATGCGCGCGTGCGTTTTTCTTTTCATGTGTTG--ATATTAGCCATAT---GCTGTGCTTGTAATTGTGGGTGGT
GCAAAATTTGAAGCTGTATTTGTGTGATTTGAGTAAAA-CTCAAAATTTAATGG-AAATGATCCTGTTCTAATTTCTAAA
CTGGGTGCTTA----TCTCTAGAACTGCGA-TTCAAA---TCAAATACTCAAATAGGTAGATTGTACTTTGCTCATCCGT
CGGTGGGTTCAGTTACC--ATTTTATGGATGTATATGATGCCCAGATTAAATTTTCAAAAACAATAGTAATAAACTAAAT
TCATTCACGATAATCAGAGGCCAATGTATATATTATCTCCTCTTGGTCCTACATTTGGCAATGAAACACCTTCAGCTCCG
TGAAATTTTACAAGCAAATCATGGGATTCTAGCAAGCTCCCGAGCATTTTAATTGGCTATCGATCATTGCTTTATAATAT
AAAGCGAGGGAAACTTTTTATCGTTTTAATTAGCTATCGAATCAACT---------------------------------
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>chr5B_728
GA------------------------------------------------------------------------------
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-----------------------------------CACAGCACAAAGTGGAGCCAGATGCTTGTG---------------
------CCCGTGCCCCAACTATTCATCAAACTACCTAAAACCAGCTGCCTCACCACTCCCCTGCTC-TGCATCCTAGTAT
TGGAACGGGTGATGTACTACTAACTCCATCCATGTCCTCTCTAACC-------ACTCGCCATCTCCTACTCCATCGCCAC
CCTAACTATATGTACGCAGC------TCATCATGCCACACCATGCACAACCACACAGGTCGACAACCACAGAGCAGCAGC
AAGCACACAAGTAAGAGACACCATAAGCCGCT--AACCAGCCAGCCATGAAGTTCCTGCCGTCCATAGCCGTCCTCCTAC
TCCTCTCCTGCTCCCTCGCGGCGGCCACGGTGCCGATCGGCACGATCGAGCGCGTGTCCAAGCAGCAGATCCTGGCGAGC
ATCCCGCCTGGAGGGCACGCCGGTCCGCCCGTGCTGTTCCTCACGTCTCCGTCCGGCAAGTACGCCGCCTACTTCGTGCG
CACCCACACCGCGCCGGGCGCCGGAGGGCTCGGCGCCGACTTTTGCTACGTCGAGGTGATGGCCGGTAGCGGCAAAGCTT
CCGAGGGCGGT------------GCTGCCGGGGGCGCGAGCGCGTGGGAGTCGGAGTGCCGGCCGGTGAGCACGGTGAAC
ACGTGCACCCTGCTCTTCTCGTGGCACGGGCTGGAGGTGTTCGACGGTAGCGAGGAGGTGTGGCACGGCGAGACCAACAC
CGACGGGACCAACTTCCTGCAGACGCTCGAGCTCGTGGACGACGGCGACATGCGCGTCCGCGACAAGGACGGCGAGCTCG
CGTGGCGGGCCAGCGACGAGCCGCGCCACGGGCAACACTGCGGCGCGCCGGGGTCACCGGGCCTTGCGGCCGCGCTGCCG
TCCTTCGCCGAGCCCATCGGCGCGCACAGCAGCAACCTGCCCTTCGGCCAGGTGCAGGGCGGCAACGGCCACGCGGCCGA
GCTGCCGCAGGCGGCGGAGCTCGGGGACGGAGTTGTTCCAGGGGCCGGAGCAGGTGGCTTGGGCGACGGCTATGGTATTG
CACCGGCGGCAGGAGGAGTCGGAGGTGTTGCCCCAGGGGCAGGTGGCTTGGGCGACGGCTATGGCAT-------------
--------------------------------------------------------TGCACCGGCGGCAGGAGGAGTCGG
AGGTGTTGCC------CCAGGGGCAGGTGGCTTGGGCG------ACGGCTACGGCATTGCACCGGCGGCAGGAGGCGCCG
GAGGAGTTGGACCGGGGGCAGGTGGCTTGGGCGATGGCTACGGCATTGCGCCGACGGTAGGAGGTGTTGCCGCGGGG---
---GCAGGGCCCTTCGGCGACGGCTACGGGATCGCACCGGGCGCCGAG-------------ACAGGAGCCTTCGGTGGTG
TCGGGGATGTTGCCGGACATGGTGAAGCGGCGACGGCGGC---C------GGCGGTGTCGCGGGAGTGGCAGGGTTCGGC
AGCCAGCCGCTG---GTGGACAACAACCCCTACGACAGTGGAGCCTACAAGGGCGGCCGTGGGGCC---CATCTCGCAGC
GATCGGAGCTGCGGTGTTTGTCAGCGCCATGGCCGTGGGTTTCTAA--------TCGGGAAGACGAATCA--GTGGCAGT
TTGGATGTGTGCGCGTGCGTTTTTCTTTTCCTGTGTGTTAATATTAGCTATATGATGATGTGCTTGTG------AGTGGT
GACAAATTTGAAGCTGTATTTGTGTGATTTGAGTAAAAACTCAAAATTTAGTGAAAAATGGTTCTGTTCTAAATTGGTTG
CGCGTCGCTAGA-------TAGAACTGTGA-TTCAACTTTTCAAATACTCAAATAT-TAAATTGCACTTTGTTCATCCGT
CGGTGGGTTTAGTTACCCTATTTTATGGATGGTATAATGATG--------------------------------------
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>chr2A_801
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---------------------------------------------------ACCACTCCCCTACTCGTGCATGC-AGTAT
TGGAACGGGTGATGTACTG---ACTCCAGCTCCTGAG---CTAACC-------ACTCGACATCTCCTACTCCATCACCAC
CTCAACTACATAAGCACACGCACGCTTCATCATGCTACACCATCCACAACCACAGCCACAG-------------AGCAGC
AAGCACACAAGCAAGAAACACGATCGAGAAGCT--GCCAGCCAGCCATGGAGGCCATGTCATACATAGCCGTGCTCCTAC
TCCTCTCCTGCTCGCTCACGGCGGCGACGGCGCCGGCCGGCACGATCGAGCGCGTGTCCAAGCAGCAGATCCTGGCGAGC
ATCCCACCAGGAGGGCACGCCAGCCCGCCCGTGCTGTTCCTCACGTCTCCGTCCGGCAAGTACGCGGCCTACTTCGTGCG
CACCCACACCGCGCCTGGCGCCGGCGGGCTCGGCGCCGACTTCTGCTACGTCGAGGTGATGGCCGGTGGTGAG-------
--------GGCGAAGGCGGCGGCAGCGCTGCCCGCGCGAGCGCGTGGGAGTCGGAGTGCCGGCCGGTGAGCACGGTGAAC
ACGTGCACCCTGCTCTTCTCGTGGCACGGGCTGGAGGTGTTCGACGGGGCCGAGGAGGTGTGGCACGGCGAGACCAACAC
CGACGGGACCAACTTCCTCCAGACGCTCGAGCTCGTCGACGACGGCGACATGCGCGTCCGCGACAAGGACGGCGAGCTCG
CGTGGCGCGCCAGCGACGAGCCCCGCCACGCGCAGCACTGCGGCGCGCCGGGGTCCCCGGGCCTCGCGGCCGCGCTGCCG
CCCTTCGCCGAGCCCATTGGCGCGCACAGCAGCAACCTGCCCTTCGGCCAGGTGGAGGGCGGCAACGGCCACGCGGCCGA
GCTGCCGCAGGCGGCGCAGCTCGGGGACGGGGTTGCTCCAGGGGCCGGAGCCTTTGCC----------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------GGCGTAGG
AGGAGTTGCC------CCGGGAGCAGGCGGCTTGGGCGACGGGTACGGCTACGGCATTGCACCAACGGCGGGAGGCGGCG
GAGA------------------------------------------------------------GGGTGCCGCGGGG---
---GCAGGACCCTTGGGTGACGGCTACGGGATTGCACCGGGCGCCGGG-------------ACAGGAGCCTTCGATGGTA
CCGGGGACATGGGCGGACAGGGTGAAGCCGCGACGGCGGCGGGGGCTGCGGGCGGTGTGGCCGGAGCGGCAGCGTTCGGC
AGCCAGCCGCTG---GTGGACAACAGCCCGTACGACAGCGGAGCCTACAAGGGCAGCCGTGGGGGC---CGTCTGGCAGC
GATTGGAACCGTGGTTTTGGTCGGTGCCATTGCCGTGGGTTTCTGA----------------------------------
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>chr2D_801
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---------------------------------------------------ACCACTCCCCTACTCGTGCATGTGC-TAT
TGGAACGGGTGATGTACTG---ACTCCAGCTCCTGA---TCTAACC-------ACTCGACATCTCCTACTCCATCACCAC
CTCGACTACATAAGCACACGCACGCTTCATCATGCTACACCATCCACAACCATAGCCACAG-------------AGCAGC
AAGCACACAAGCAAGAAACACGATCGAGAAGCT--GCCAGCCAGCCATGGAGGTCATGTCTTCCATAGCCGTGCTCCTAC
TCCTCTCCTGCTCGCTCACGGCGGCGACGGCGCCTGCCGGCACGATCGAGCGCGTGTCCAAGCAGCAGATCCTGGCGAGC
ATCCCGCCAGGAGGGCACGCCAGCCCGCCCGTGCTGTTCCTCACGTCCCCCTCTGGCAAGTACGCGGCCTACTTCGTGCG
CACCCACACCGCGCCTGGCGCCGGCGGGCTCGGCGCCGACTTTTGCTACGTCGAGGTGATGGCCGGTGGTGAG-------
--------GGCGAAGGCGGCGGCAGCGCTACCCACGCGAGCGCGTGGGAGTCGGAGTGCCGGCCGGTGAGCACGGTGAAC
ACGTGCACCCTGCTCTTCTCGTGGCACGGACTGGAGGTGTTCGACGGGGCCGAGGAGGTGTGGCACGGCGAGACCAACAC
CGACGGGACCAACTTCCTCCAGACGCTCGAGCTCGTCGACGACGGCGACATGCGCGTCCGCGACAAGGACGGCGAGCTCG
CGTGGCGCGCCAGCGACGAGCCCCGCCACGCGCAGCACTGCGGCGCGCCGGGGTCCCCGGGCCTCGCGGCCGCGCTGCCG
CCCTTCGCCGAGCCCATTGGCGCGCACAGCAGCAACCTGCCCTTCGGCCAGGTGGAGGGCGGCAACGGCCACGCGGCCGA
GCTGCCGCAGGCGGCGGGTCTCGGGGACGGGGTTGCTCCAGGGGCCGGAGCCTTTGCC----------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------GGCGTAGG
AGGAGTTGCCCCGGGGCCGGGAGCAGGCGGATTGGGCGACGGGTACGGCTACGGCATTGCACCAACGGCGGGAGGCGGCG
GAGG------------------------------------------------------------TGTTGCCGCGGGGGCA
GGAGCAGGACCCTTGGGTGACGGCTACGGGATTGCACCGGGCGCCGGG-------------ACAGGAGCCTTCGATGGTA
CCGGGGACATGGACGGACAGGGTGCAGCCGCGACGGCGGCGGGGGCTGCGGGCGGGGTGGCCGGAGCGGCAGTGTTCGGC
AGCCAGCCGCTT---GTGGACAACAGCCCCTACGACAGCGGAGCCTACAAGGGCAGCCGTGGGGCC---CGTCTCGCGGC
GATTGGAACCGTGGTTTTCGTCGGTGCCATTGCCGTGGGTTTCTGA----------------------------------
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>chr2B_825
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---------------------------------------------------------------------------AGTAT
TGGAACGGGTGATGTACTA---ACTCCAGCTCCTGA---TCTAACCACTCGAGACTCGACATCTCCTACTCCATCACCAC
CTCAACTACATAAGCACACGCACGCTTCATCATGCTACACCATCCACAACCACAGCCACAG-------------AGCAGC
AAGCACACAAGCAAGAAACACGATCGAGAAGCT--GCCAGCCAGCCATGGAGGTCATGTCATCCATAGCCGTGCTCCTAC
TCCTCTCCTGCTCGCTCACGGCGGCGACGGCGCCGGCCGGCACGATTGAGCGCGTGTCCAAGCAGCAGATCCTGGCGAGC
ATCCCACCAGGAGGGCACGCCAGCCCGCCCGTGCTGTTCCTCACGTCTCCCTCTGGCAAGTACGCGGCCTACTTCGTGCG
CACCCACACCGCGCCAGGCGCCGGCGGGCTTGGCGCCGACTTCTGCTACGTCGAGGTGATGGCCGGTGGTGAG-------
--------GGCGAAGGCGGT---AGCGCTGCCCACGCGAGCGCGTGGGAGTCGGAGTGCCGGCCGGTGAGCACGGTCAAC
ACGTGCACCCTGCTCTTCTCGTGGCACGGGCTGGAGGTGTTCGACGGGGCCGAGGAGGTGTGGCACGGCGAGACCAACAC
CGACGGGACCAACTTCCTCCAGACGCTCGAGATCGTCGACGACGGCGACATGCGCGTCCGCGACAAGGACGGCGAACTCG
CGTGGCGCGCCAGCGACGAGCCCCGCCACGCGCAGCACTGCGGCGCGCCGGGGTCCCCGGGCCTCGCGGCCGCGCTGCCG
CCCTTCGCCGAGCCCATTGGCGCGCACAGCAGCAACCTGCCCTTCGGCCAGGTGGAGGGCGGCAACGGCCACGCGGCCGA
GCTACCGCAGGCGGCGGAGCTCGGGGACGGGGTTGCTCCAGGGGCCGGAGCCTTTGCC----------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------GGCGTAGG
AGGAGTTGCC------CCGGGAGCAGGCGGCTTGGGCGACGGGTACGGCTACGGCATTGCACCAACGGCGGGAGGCGGCG
GAGG------------------------------------------------------------TGTTGCCGCGGGGACA
GGAGGAGGACCCTTGGGTGACGGCTACGGGATTGCACCGGGCGCCGGG-------------ACAGGAGCCTTCGATGGTA
CCGGGGACATGGGCGGACAGGGTGCAGCCGCGACGGCGGCGGGGGCTGCGGGCGGTGTGGCCGGAGCGGCAGCGTTCGGC
AGCCAGCCGCTG---GTGGACAACAGCCCCTACGACAGCGGAGCCTACAAGGGCAGCCGTGGGGCC---CGTCTCGCGGC
GATTGGAACCGTGGTTTTCGTCGGTGCCATTGCCGTGGGTTTCTGA----------------------------------
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>chr5D_1518
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---GGCGGGCCAGCGACGAGCCGCGCCAAGCGCAGCACTGCGG-----CGGGGTCACC-GGCCTTGCGGCCGCGCTGCCG
C---TCCCCGAGCCCATGGGCACGCACAGCAGCAACCTGCCCTTTGGCCAGGTGCAGGGCGGCTACG----------GGA
GCTGCCGCAGGCAGCGGAGCTCGGGGACGGAGTTGTTCCAGGGGCCGGAGCAGGTGGCTTGGGCGACGGCTATGG-----
----------------------------------------------------------------CATTGCACCAGCATCA
GGAGGAGTCGGAGGTGTTGCCCCAGGGGCAGGTGGTTTGGGCGACGGCTACGGCATTGCACCAGCGGCAGGAGGCGTCGG
AGGTGTTGCC------CCAGGGGCAGGTGGCTTGGGCG------ACGGCTACGGCATTGCACCGGCGGCAGGAGGCGCCG
GAGGAGTTGGCCCGGGGGCAGGTGGCTTGGGCGACGGCTACGGCATTGCGCCGACGGCAGAAGGTGTTGCCGCGGAG---
---GCAGGGACCTTCGGCGACGGCTACGGGATCACACCGGGCACCGGTGCTCTGCACCGGTGCAGGAGCCTTCGGCGGTG
CCAGGGACGTTGCCGAACATGGTGAAGCGGCGACGGCGGC---C------GGCGGTGTTGCGGGAGTGGCAGGGTTCGGC
AGCCAGCCACTG---GTGGACAACAGCCCCTACGACAGTGGAGCCTACAAGGGCAGCCGTGGGGCC---CCTCTAGCGGC
GATCGGAGCCGTGGTGTTTGTCAGCGCCATGGCCGTGGGCTTCTGA--------TCGGGAAGACGGATCA--GTGGCAGT
CTGGATATGCGCTCGTGCGTTTTTCTTTTCATGTGTTG--ATATTAGCCATAT-ATGCTGTGCTTGTGATTGCCAGTGGT
GCAAAATTTGAAGCTGTATTTGTGTGATTTGAGTTAAA-CTCAAAATTTAATGG-AAATGGTTCTGTTCTAATTTCTAAC
CTGGGTGCTTAATTATCTCCAGAATTGCAA-TTCG-A---TCAAATACTCAAAAAGGTAGGTTGCACTTTGTTCATCCGT
CGGTGGGTTCAGTTACC--ATTTTATGGATGTATATGATGTCCAGATTAAATTTTCAGAAAGAATAGTAATAGACTAAAT
TCATTTACCATAATCAGAGGCCAATGTATATATGATCTCCTCTTGTCCCTACATTTGGCAATGAAACACCTTCAGCTCCG
TGAAATTTTACAAGCAAATCATGGGATTCTAGCAAGCTCCT---------------------------------------
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>chr5D_1799
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----------------------------GGCTTGGGCG------ACGGCTACGGCATTGCACCGGCAGCAGGAGGCGCCG
GAGGAGTTGGCCCGGGGGCAGGTGGCTTGGGCAACAGCTACGGCATTGCGCCGACGGCAGCAGGTGTTGCCACGGGG---
---GAAGGGCCCTTCGGCGACGGCTACGGGATCGCACCGGGCGTCGAG-------------ACATGAGCCTTCGATGGTG
CAAGGGATGTTGCCGGACATGGTGAAGCGGCGGCGACGGCGGCC------GGCGGTGTCGCGGGAGTGGCAGGGTTCGGC
AGCCAGCCGCTAGTAGTGGACAACAGCCCCTACGACAGTGGAGCC---AAGGGCAGCCATGGGGCC---CATCTCGCGGC
GATTGGAGCTGCGGTGTTTGTCAGCGCCATGGTCGTGGGTTTCTGA---------CGGGAAGACGAATCA--GTGGCAGT
TTGGATGTGTGCGCGTGCGTTTTTCTTTTCATGTGTGTTAATATTAGCTATGTGGTGATGTGCTTGTG------AGTGGT
GACAAATTTGAAGCTGTATTTGTGTGATTTGAGTAAAAACTCAAAATTCAGTGAAAAATGGTTCTGTTCTAAATTGGGTG
CACGTGGCT-----------AGAACTGTGATTTCAAA---TCAAATACTCAAATAGGTAGATTCTACTTTGTTCATCCAT
CGGTGGGTTTAGTTACCCTCTTTTATGGATGTAT----------------------------------------------
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>SNPs
----S-SS-S---S-S-S---------S-----S-S--S--S-S---SS---S------S-----------SS-------
--------S---S--S--S--SS-----------------S--------------------SSS---S----S-SS----
--------S-------S------------S--S--------S---------S--SSSS-SSSSS--SSSSSS--------
------------------------S-------S---------S--S----S---S--S----SSS----------S----
-S-----SS------------S-------SS--------S-------S-S------------------------------
------S------SSSSS-------S----S-------S-S------------------------------S-S---S--
----------S-----S--S-----SS----S----S------------S-------SS--S----S--S---S----SS
-------S-------SSSSS---------S-S------SS-----S--S-----------SSS---S-------S--SS-
SSS-SSS-SSSSS--S-------------------SS-S--S-S----S-----SSS------------S----------
-S--------S---------------S-S-----S---------------------------------------------
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----------------------------S-SSSSSSSS-----------S----------------S-------------
------------------------S-------------------S--------------------S-----S--------
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----------SS--------------------------------------------------------------------
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-------------------------------------------------------------------S------------
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S----------------------------------S-----S--------------------------------------
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-----------------------------------------------------------------S--------------
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-----SS-----------------------------------------------------------------------S-
----------------------------------------------------S---------------------------
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-------------S------------------------------------------------------------------
-------------------------------------------------------S------------------------
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--------------S----------S----------------------S-------------------------S-----
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-------------------------------------------S------------------S--S--------------
--------------S----------------S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_749
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---------TCAAGTCTGACCCAATCGGC---------------------------------------------------
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>reverse_2602
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-----------------------------------------GTTTGGCCAGGTGCAGGG---------------------
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>forward_755
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--------------TCTGACCCAATCGGCAATCAT---------------------------------------------
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>reverse_3374
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-------------TGTGCGTTTTTCTTTTCATGTGT--------------------------------------------
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