Multiple sequence alignment - TraesCS5D01G325200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G325200 chr5D 100.000 4694 0 0 1 4694 416629639 416624946 0.000000e+00 8669.0
1 TraesCS5D01G325200 chr5D 80.645 124 19 3 2678 2797 416788030 416787908 1.800000e-14 91.6
2 TraesCS5D01G325200 chr5B 92.721 2253 108 23 869 3089 503531236 503529008 0.000000e+00 3201.0
3 TraesCS5D01G325200 chr5B 90.625 768 41 11 3090 3831 503528930 503528168 0.000000e+00 990.0
4 TraesCS5D01G325200 chr5B 90.950 442 33 5 250 686 503531699 503531260 5.230000e-164 588.0
5 TraesCS5D01G325200 chr5B 88.722 399 34 5 4233 4629 503527167 503526778 1.180000e-130 477.0
6 TraesCS5D01G325200 chr5B 93.050 259 17 1 1 259 503533355 503533098 1.230000e-100 377.0
7 TraesCS5D01G325200 chr5B 88.525 183 18 2 4054 4234 503527412 503527231 7.910000e-53 219.0
8 TraesCS5D01G325200 chr5B 82.000 150 19 5 2451 2599 503791835 503791693 2.290000e-23 121.0
9 TraesCS5D01G325200 chr5B 80.645 124 19 3 2678 2797 503791576 503791454 1.800000e-14 91.6
10 TraesCS5D01G325200 chr5A 94.118 1224 33 8 2709 3896 529437862 529436642 0.000000e+00 1825.0
11 TraesCS5D01G325200 chr5A 96.914 972 28 2 932 1902 529439141 529438171 0.000000e+00 1628.0
12 TraesCS5D01G325200 chr5A 86.809 561 57 13 1 553 529440340 529439789 1.120000e-170 610.0
13 TraesCS5D01G325200 chr5A 86.935 398 45 4 4233 4629 529436178 529435787 1.550000e-119 440.0
14 TraesCS5D01G325200 chr2B 94.488 127 7 0 680 806 36592505 36592631 3.710000e-46 196.0
15 TraesCS5D01G325200 chr2B 88.194 144 5 3 682 813 290110787 290110644 1.350000e-35 161.0
16 TraesCS5D01G325200 chr2B 88.971 136 4 2 682 806 550226656 550226521 1.750000e-34 158.0
17 TraesCS5D01G325200 chr2B 80.690 145 23 5 409 549 404081853 404081710 1.790000e-19 108.0
18 TraesCS5D01G325200 chr2B 88.060 67 8 0 2950 3016 660461352 660461418 3.890000e-11 80.5
19 TraesCS5D01G325200 chr3B 94.309 123 7 0 684 806 580065287 580065409 6.200000e-44 189.0
20 TraesCS5D01G325200 chr3B 89.630 135 4 1 682 806 52185651 52185785 3.760000e-36 163.0
21 TraesCS5D01G325200 chr1D 94.915 118 6 0 687 804 444906956 444907073 8.020000e-43 185.0
22 TraesCS5D01G325200 chr1D 100.000 30 0 0 4624 4653 351255387 351255358 6.560000e-04 56.5
23 TraesCS5D01G325200 chr3A 89.706 136 3 2 682 806 697501490 697501625 3.760000e-36 163.0
24 TraesCS5D01G325200 chr3A 87.857 140 6 2 678 806 637530343 637530204 2.260000e-33 154.0
25 TraesCS5D01G325200 chr3A 97.297 37 1 0 2950 2986 721256492 721256456 3.920000e-06 63.9
26 TraesCS5D01G325200 chr3A 97.297 37 1 0 2950 2986 721452273 721452309 3.920000e-06 63.9
27 TraesCS5D01G325200 chr3D 89.051 137 4 2 681 806 255447285 255447149 4.860000e-35 159.0
28 TraesCS5D01G325200 chr3D 87.879 66 7 1 4628 4693 532171834 532171898 5.040000e-10 76.8
29 TraesCS5D01G325200 chr3D 97.297 37 1 0 2950 2986 590755615 590755579 3.920000e-06 63.9
30 TraesCS5D01G325200 chr3D 96.774 31 1 0 4620 4650 349640812 349640782 8.000000e-03 52.8
31 TraesCS5D01G325200 chr4A 85.047 107 13 3 412 516 510189345 510189450 6.420000e-19 106.0
32 TraesCS5D01G325200 chr1B 85.849 106 5 5 2950 3045 615122121 615122226 2.310000e-18 104.0
33 TraesCS5D01G325200 chr2A 91.071 56 5 0 2950 3005 694582186 694582241 5.040000e-10 76.8
34 TraesCS5D01G325200 chr7D 85.075 67 10 0 4627 4693 78042413 78042479 8.430000e-08 69.4
35 TraesCS5D01G325200 chr1A 97.368 38 1 0 2949 2986 517515252 517515215 1.090000e-06 65.8
36 TraesCS5D01G325200 chr6B 96.875 32 1 0 4158 4189 39146783 39146814 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G325200 chr5D 416624946 416629639 4693 True 8669.000000 8669 100.0000 1 4694 1 chr5D.!!$R1 4693
1 TraesCS5D01G325200 chr5B 503526778 503533355 6577 True 975.333333 3201 90.7655 1 4629 6 chr5B.!!$R1 4628
2 TraesCS5D01G325200 chr5A 529435787 529440340 4553 True 1125.750000 1825 91.1940 1 4629 4 chr5A.!!$R1 4628

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
722 2311 0.105709 CAGGGTTGTGGAGGGGTTTT 60.106 55.0 0.0 0.0 0.0 2.43 F
723 2312 0.105709 AGGGTTGTGGAGGGGTTTTG 60.106 55.0 0.0 0.0 0.0 2.44 F
724 2313 0.105913 GGGTTGTGGAGGGGTTTTGA 60.106 55.0 0.0 0.0 0.0 2.69 F
2577 4425 0.038159 CTCGGAAGGTGTGTGAGGTC 60.038 60.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2061 3907 0.110295 TTGGCCTTTGAGTGCTGCTA 59.890 50.0 3.32 0.0 0.00 3.49 R
2144 3990 0.114168 CTGAAATTGTCCCCCACCCA 59.886 55.0 0.00 0.0 0.00 4.51 R
2583 4431 0.249280 CGCATACCTGTATGTCCGCA 60.249 55.0 16.38 0.0 43.57 5.69 R
3772 5732 0.679960 GATAACCAAGGGCAGCGGTT 60.680 55.0 7.50 7.5 44.98 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 0.751277 CAACCTGCCAGACCACAACA 60.751 55.000 0.00 0.00 0.00 3.33
53 55 2.746904 CCACAACACTTCACACAACAGA 59.253 45.455 0.00 0.00 0.00 3.41
68 70 3.389329 ACAACAGACAACAGTGAGGAGAT 59.611 43.478 0.00 0.00 0.00 2.75
136 141 4.429212 CCGACACCGCCGATGTCA 62.429 66.667 12.84 0.00 45.64 3.58
172 177 4.060900 TGAATCGCTCTTCCATGAATAGC 58.939 43.478 0.00 4.62 38.05 2.97
175 180 1.517242 GCTCTTCCATGAATAGCGGG 58.483 55.000 0.00 0.00 33.47 6.13
236 241 5.006261 CACGATATCGCACTTTACCAAATCA 59.994 40.000 24.59 0.00 44.43 2.57
278 1691 9.573166 TCTTAAATGACAAGATTGAGAAGGAAA 57.427 29.630 0.00 0.00 0.00 3.13
440 1854 2.945668 GGCATAGCCTAGTGGTGAAAAG 59.054 50.000 0.00 0.00 46.69 2.27
450 1865 0.482446 TGGTGAAAAGGGGTGATGCT 59.518 50.000 0.00 0.00 0.00 3.79
472 1887 5.595952 GCTTTCCCACCAATCTAGATTCAAT 59.404 40.000 15.24 1.18 0.00 2.57
476 1891 4.037208 CCCACCAATCTAGATTCAATGCAC 59.963 45.833 15.24 0.00 0.00 4.57
481 1896 5.702670 CCAATCTAGATTCAATGCACGGTAT 59.297 40.000 15.24 0.00 0.00 2.73
516 1931 6.332630 AGGTTTGTTGCATCAATTATACTGC 58.667 36.000 10.87 0.00 35.21 4.40
519 1935 6.513806 TTGTTGCATCAATTATACTGCAGT 57.486 33.333 25.12 25.12 44.61 4.40
523 1939 5.184711 TGCATCAATTATACTGCAGTGACA 58.815 37.500 29.57 10.23 39.54 3.58
653 2242 8.492673 AAGTTCGAATGCAAAAGATGTATAGA 57.507 30.769 0.00 0.00 32.69 1.98
658 2247 7.552687 TCGAATGCAAAAGATGTATAGAAACCT 59.447 33.333 0.00 0.00 32.69 3.50
687 2276 6.166984 TCAAGCTTGACTAATATCCCTGAG 57.833 41.667 25.16 0.00 31.01 3.35
688 2277 5.070981 TCAAGCTTGACTAATATCCCTGAGG 59.929 44.000 25.16 0.00 31.01 3.86
689 2278 3.326297 AGCTTGACTAATATCCCTGAGGC 59.674 47.826 0.00 0.00 0.00 4.70
690 2279 3.558109 GCTTGACTAATATCCCTGAGGCC 60.558 52.174 0.00 0.00 0.00 5.19
691 2280 3.344535 TGACTAATATCCCTGAGGCCA 57.655 47.619 5.01 0.00 0.00 5.36
692 2281 3.874316 TGACTAATATCCCTGAGGCCAT 58.126 45.455 5.01 0.00 0.00 4.40
693 2282 5.023514 TGACTAATATCCCTGAGGCCATA 57.976 43.478 5.01 0.00 0.00 2.74
694 2283 5.603750 TGACTAATATCCCTGAGGCCATAT 58.396 41.667 5.01 0.00 0.00 1.78
695 2284 6.032039 TGACTAATATCCCTGAGGCCATATT 58.968 40.000 5.01 14.66 0.00 1.28
696 2285 6.156949 TGACTAATATCCCTGAGGCCATATTC 59.843 42.308 5.01 0.00 0.00 1.75
697 2286 4.494091 AATATCCCTGAGGCCATATTCG 57.506 45.455 5.01 0.00 0.00 3.34
698 2287 0.987294 ATCCCTGAGGCCATATTCGG 59.013 55.000 5.01 0.00 0.00 4.30
699 2288 0.399949 TCCCTGAGGCCATATTCGGT 60.400 55.000 5.01 0.00 0.00 4.69
700 2289 0.474184 CCCTGAGGCCATATTCGGTT 59.526 55.000 5.01 0.00 0.00 4.44
701 2290 1.597742 CCTGAGGCCATATTCGGTTG 58.402 55.000 5.01 0.00 0.00 3.77
702 2291 1.140852 CCTGAGGCCATATTCGGTTGA 59.859 52.381 5.01 0.00 0.00 3.18
703 2292 2.213499 CTGAGGCCATATTCGGTTGAC 58.787 52.381 5.01 0.00 0.00 3.18
704 2293 1.557371 TGAGGCCATATTCGGTTGACA 59.443 47.619 5.01 0.00 0.00 3.58
705 2294 2.213499 GAGGCCATATTCGGTTGACAG 58.787 52.381 5.01 0.00 0.00 3.51
706 2295 1.134098 AGGCCATATTCGGTTGACAGG 60.134 52.381 5.01 0.00 0.00 4.00
707 2296 1.308998 GCCATATTCGGTTGACAGGG 58.691 55.000 0.00 0.00 0.00 4.45
708 2297 1.408266 GCCATATTCGGTTGACAGGGT 60.408 52.381 0.00 0.00 0.00 4.34
709 2298 2.944094 GCCATATTCGGTTGACAGGGTT 60.944 50.000 0.00 0.00 0.00 4.11
710 2299 2.682856 CCATATTCGGTTGACAGGGTTG 59.317 50.000 0.00 0.00 0.00 3.77
711 2300 3.343617 CATATTCGGTTGACAGGGTTGT 58.656 45.455 0.00 0.00 41.18 3.32
712 2301 1.604604 ATTCGGTTGACAGGGTTGTG 58.395 50.000 0.00 0.00 37.76 3.33
713 2302 0.464735 TTCGGTTGACAGGGTTGTGG 60.465 55.000 0.00 0.00 37.76 4.17
714 2303 1.147376 CGGTTGACAGGGTTGTGGA 59.853 57.895 0.00 0.00 37.76 4.02
715 2304 0.884704 CGGTTGACAGGGTTGTGGAG 60.885 60.000 0.00 0.00 37.76 3.86
716 2305 0.537371 GGTTGACAGGGTTGTGGAGG 60.537 60.000 0.00 0.00 37.76 4.30
717 2306 0.537371 GTTGACAGGGTTGTGGAGGG 60.537 60.000 0.00 0.00 37.76 4.30
718 2307 1.715019 TTGACAGGGTTGTGGAGGGG 61.715 60.000 0.00 0.00 37.76 4.79
719 2308 2.038762 ACAGGGTTGTGGAGGGGT 60.039 61.111 0.00 0.00 35.83 4.95
720 2309 1.699930 ACAGGGTTGTGGAGGGGTT 60.700 57.895 0.00 0.00 35.83 4.11
721 2310 1.293683 ACAGGGTTGTGGAGGGGTTT 61.294 55.000 0.00 0.00 35.83 3.27
722 2311 0.105709 CAGGGTTGTGGAGGGGTTTT 60.106 55.000 0.00 0.00 0.00 2.43
723 2312 0.105709 AGGGTTGTGGAGGGGTTTTG 60.106 55.000 0.00 0.00 0.00 2.44
724 2313 0.105913 GGGTTGTGGAGGGGTTTTGA 60.106 55.000 0.00 0.00 0.00 2.69
725 2314 1.037493 GGTTGTGGAGGGGTTTTGAC 58.963 55.000 0.00 0.00 0.00 3.18
726 2315 1.686741 GGTTGTGGAGGGGTTTTGACA 60.687 52.381 0.00 0.00 0.00 3.58
727 2316 1.681264 GTTGTGGAGGGGTTTTGACAG 59.319 52.381 0.00 0.00 0.00 3.51
728 2317 0.184933 TGTGGAGGGGTTTTGACAGG 59.815 55.000 0.00 0.00 0.00 4.00
729 2318 0.539669 GTGGAGGGGTTTTGACAGGG 60.540 60.000 0.00 0.00 0.00 4.45
730 2319 0.699577 TGGAGGGGTTTTGACAGGGA 60.700 55.000 0.00 0.00 0.00 4.20
731 2320 0.704664 GGAGGGGTTTTGACAGGGAT 59.295 55.000 0.00 0.00 0.00 3.85
732 2321 1.077169 GGAGGGGTTTTGACAGGGATT 59.923 52.381 0.00 0.00 0.00 3.01
733 2322 2.171003 GAGGGGTTTTGACAGGGATTG 58.829 52.381 0.00 0.00 0.00 2.67
734 2323 1.786441 AGGGGTTTTGACAGGGATTGA 59.214 47.619 0.00 0.00 0.00 2.57
735 2324 2.171003 GGGGTTTTGACAGGGATTGAG 58.829 52.381 0.00 0.00 0.00 3.02
736 2325 2.225017 GGGGTTTTGACAGGGATTGAGA 60.225 50.000 0.00 0.00 0.00 3.27
737 2326 3.564352 GGGGTTTTGACAGGGATTGAGAT 60.564 47.826 0.00 0.00 0.00 2.75
738 2327 3.445096 GGGTTTTGACAGGGATTGAGATG 59.555 47.826 0.00 0.00 0.00 2.90
739 2328 3.445096 GGTTTTGACAGGGATTGAGATGG 59.555 47.826 0.00 0.00 0.00 3.51
740 2329 4.335416 GTTTTGACAGGGATTGAGATGGA 58.665 43.478 0.00 0.00 0.00 3.41
741 2330 4.868172 TTTGACAGGGATTGAGATGGAT 57.132 40.909 0.00 0.00 0.00 3.41
742 2331 4.868172 TTGACAGGGATTGAGATGGATT 57.132 40.909 0.00 0.00 0.00 3.01
743 2332 5.974156 TTGACAGGGATTGAGATGGATTA 57.026 39.130 0.00 0.00 0.00 1.75
744 2333 5.974156 TGACAGGGATTGAGATGGATTAA 57.026 39.130 0.00 0.00 0.00 1.40
745 2334 6.325993 TGACAGGGATTGAGATGGATTAAA 57.674 37.500 0.00 0.00 0.00 1.52
746 2335 6.914665 TGACAGGGATTGAGATGGATTAAAT 58.085 36.000 0.00 0.00 0.00 1.40
747 2336 7.000472 TGACAGGGATTGAGATGGATTAAATC 59.000 38.462 0.00 0.00 0.00 2.17
764 2353 8.841300 GGATTAAATCCTCTACAAGTCAAATCC 58.159 37.037 0.00 0.00 46.19 3.01
765 2354 8.753497 ATTAAATCCTCTACAAGTCAAATCCC 57.247 34.615 0.00 0.00 0.00 3.85
766 2355 4.779993 ATCCTCTACAAGTCAAATCCCC 57.220 45.455 0.00 0.00 0.00 4.81
767 2356 2.844348 TCCTCTACAAGTCAAATCCCCC 59.156 50.000 0.00 0.00 0.00 5.40
784 2373 2.205342 CCCCCAAATCCTCTTAGGTCA 58.795 52.381 0.00 0.00 36.53 4.02
785 2374 2.173569 CCCCCAAATCCTCTTAGGTCAG 59.826 54.545 0.00 0.00 36.53 3.51
786 2375 2.173569 CCCCAAATCCTCTTAGGTCAGG 59.826 54.545 0.00 0.00 36.53 3.86
787 2376 2.173569 CCCAAATCCTCTTAGGTCAGGG 59.826 54.545 0.00 0.00 36.53 4.45
788 2377 2.846827 CCAAATCCTCTTAGGTCAGGGT 59.153 50.000 0.00 0.00 36.53 4.34
789 2378 3.370953 CCAAATCCTCTTAGGTCAGGGTG 60.371 52.174 0.00 0.00 36.53 4.61
790 2379 2.950990 ATCCTCTTAGGTCAGGGTGT 57.049 50.000 0.00 0.00 36.53 4.16
791 2380 4.348020 AATCCTCTTAGGTCAGGGTGTA 57.652 45.455 0.00 0.00 36.53 2.90
792 2381 3.839323 TCCTCTTAGGTCAGGGTGTAA 57.161 47.619 0.00 0.00 36.53 2.41
793 2382 3.438183 TCCTCTTAGGTCAGGGTGTAAC 58.562 50.000 0.00 0.00 36.53 2.50
807 2396 1.265905 GTGTAACCGAACAAAGCCTGG 59.734 52.381 0.00 0.00 0.00 4.45
816 2405 0.752658 ACAAAGCCTGGGAAAACAGC 59.247 50.000 0.00 0.00 37.16 4.40
827 2416 2.352127 GGGAAAACAGCTGCAGATCAAC 60.352 50.000 20.43 0.00 0.00 3.18
838 2427 1.359848 CAGATCAACACTACCACCGC 58.640 55.000 0.00 0.00 0.00 5.68
845 2434 4.691359 ACTACCACCGCCGTCCCT 62.691 66.667 0.00 0.00 0.00 4.20
849 2438 1.190833 TACCACCGCCGTCCCTTAAA 61.191 55.000 0.00 0.00 0.00 1.52
852 2441 1.170442 CACCGCCGTCCCTTAAAATT 58.830 50.000 0.00 0.00 0.00 1.82
917 2508 7.038373 AGGGATTTTGTAGGTACATTTGCAATT 60.038 33.333 0.00 0.00 35.89 2.32
1074 2910 2.647802 CCTTCCTCCTACTTTTCCCCAA 59.352 50.000 0.00 0.00 0.00 4.12
1353 3189 3.055719 CTTTCCATGGGCGCACGT 61.056 61.111 13.02 2.99 0.00 4.49
1516 3352 2.606519 CCTCTTGTGGTCGGGGGA 60.607 66.667 0.00 0.00 0.00 4.81
1608 3444 2.124778 GGCCTGCTCTTCTCTGCC 60.125 66.667 0.00 0.00 0.00 4.85
1644 3480 6.256053 TCCCCTCTTCTTTTTGCTGAAATAT 58.744 36.000 0.00 0.00 0.00 1.28
1747 3583 1.227704 TGAATGGCGTGTCGTTGGT 60.228 52.632 0.00 0.00 0.00 3.67
1826 3662 5.823045 AGGTACTACTAGCATTTGCATTTCC 59.177 40.000 5.20 0.00 40.12 3.13
1828 3664 3.627577 ACTACTAGCATTTGCATTTCCGG 59.372 43.478 5.20 0.00 45.16 5.14
1888 3724 6.050432 GTCTAGTCGATTCTTCAGGAGAGTA 58.950 44.000 0.00 0.00 35.37 2.59
1889 3725 6.202188 GTCTAGTCGATTCTTCAGGAGAGTAG 59.798 46.154 0.00 0.00 35.37 2.57
1890 3726 5.105567 AGTCGATTCTTCAGGAGAGTAGA 57.894 43.478 0.00 0.00 35.37 2.59
1891 3727 5.123227 AGTCGATTCTTCAGGAGAGTAGAG 58.877 45.833 0.00 0.00 35.37 2.43
1892 3728 5.104693 AGTCGATTCTTCAGGAGAGTAGAGA 60.105 44.000 0.00 0.00 35.37 3.10
1893 3729 5.236478 GTCGATTCTTCAGGAGAGTAGAGAG 59.764 48.000 0.00 0.00 35.37 3.20
1955 3791 6.496338 AACGAAATTCAGGTTAGTCCATTC 57.504 37.500 0.00 0.00 39.02 2.67
1995 3831 0.530288 GAAAGAGAGAGCAGCGGTCT 59.470 55.000 9.46 9.46 43.43 3.85
2014 3852 1.349026 CTGAGGCCTCAGGACTGAAAA 59.651 52.381 43.40 17.03 43.92 2.29
2015 3853 1.988107 TGAGGCCTCAGGACTGAAAAT 59.012 47.619 32.00 0.00 43.92 1.82
2019 3857 2.489722 GGCCTCAGGACTGAAAATGAAC 59.510 50.000 0.00 0.00 39.39 3.18
2039 3877 6.157211 TGAACTTCAGGTTAGTCGATTCTTC 58.843 40.000 0.00 0.00 38.41 2.87
2058 3904 3.935818 TCGGGAGAATAGAGACAGAGT 57.064 47.619 0.00 0.00 34.75 3.24
2061 3907 4.141287 CGGGAGAATAGAGACAGAGTGAT 58.859 47.826 0.00 0.00 0.00 3.06
2087 3933 2.507484 CACTCAAAGGCCAAGATGTCA 58.493 47.619 5.01 0.00 0.00 3.58
2092 3938 2.191128 AAGGCCAAGATGTCAGTGAC 57.809 50.000 16.68 16.68 0.00 3.67
2115 3961 4.680237 CGGCCGCAGTGTCTCCAA 62.680 66.667 14.67 0.00 0.00 3.53
2117 3963 2.031163 GCCGCAGTGTCTCCAACT 59.969 61.111 0.00 0.00 0.00 3.16
2144 3990 3.368843 CGAGGATGAGAATTCACAGGTGT 60.369 47.826 11.29 0.00 35.83 4.16
2163 4009 0.114168 TGGGTGGGGGACAATTTCAG 59.886 55.000 0.00 0.00 0.00 3.02
2199 4045 0.528470 ATTAGATAGCCGCCGAGCTC 59.472 55.000 2.73 2.73 43.67 4.09
2253 4099 2.930019 CCTCACAGGTGGCAGGGA 60.930 66.667 0.00 0.00 0.00 4.20
2255 4101 2.447572 TCACAGGTGGCAGGGACA 60.448 61.111 0.00 0.00 0.00 4.02
2256 4102 2.055689 CTCACAGGTGGCAGGGACAA 62.056 60.000 0.00 0.00 0.00 3.18
2257 4103 1.075482 CACAGGTGGCAGGGACAAT 59.925 57.895 0.00 0.00 0.00 2.71
2260 4106 3.443045 GGTGGCAGGGACAATGCG 61.443 66.667 0.00 0.00 44.80 4.73
2280 4126 3.844090 GCCGCCAGAGGAGAGGTC 61.844 72.222 0.00 0.00 0.00 3.85
2290 4136 4.816984 GAGAGGTCGGGGGCGAGA 62.817 72.222 0.00 0.00 0.00 4.04
2308 4154 1.204941 AGACGGAAAGAAGATCGGGTG 59.795 52.381 0.00 0.00 0.00 4.61
2312 4158 0.107165 GAAAGAAGATCGGGTGGGGG 60.107 60.000 0.00 0.00 0.00 5.40
2313 4159 0.549169 AAAGAAGATCGGGTGGGGGA 60.549 55.000 0.00 0.00 0.00 4.81
2314 4160 0.549169 AAGAAGATCGGGTGGGGGAA 60.549 55.000 0.00 0.00 0.00 3.97
2315 4161 0.549169 AGAAGATCGGGTGGGGGAAA 60.549 55.000 0.00 0.00 0.00 3.13
2317 4163 0.845102 AAGATCGGGTGGGGGAAAGT 60.845 55.000 0.00 0.00 0.00 2.66
2320 4166 0.916809 ATCGGGTGGGGGAAAGTAAG 59.083 55.000 0.00 0.00 0.00 2.34
2438 4286 6.198966 GTCTAATCCAAAGCTTGTTTGTTGTG 59.801 38.462 0.00 0.00 0.00 3.33
2440 4288 3.843999 TCCAAAGCTTGTTTGTTGTGTC 58.156 40.909 0.00 0.00 0.00 3.67
2449 4297 2.814919 TGTTTGTTGTGTCCGTCTTTGT 59.185 40.909 0.00 0.00 0.00 2.83
2450 4298 3.168193 GTTTGTTGTGTCCGTCTTTGTG 58.832 45.455 0.00 0.00 0.00 3.33
2529 4377 3.777925 CGGCTCCACGCGTTTCTG 61.778 66.667 10.22 0.00 40.44 3.02
2577 4425 0.038159 CTCGGAAGGTGTGTGAGGTC 60.038 60.000 0.00 0.00 0.00 3.85
2583 4431 1.301716 GGTGTGTGAGGTCGTGCAT 60.302 57.895 0.00 0.00 0.00 3.96
2592 4440 1.520564 GGTCGTGCATGCGGACATA 60.521 57.895 30.66 6.55 33.67 2.29
2602 4450 0.249280 TGCGGACATACAGGTATGCG 60.249 55.000 17.10 14.40 45.06 4.73
2610 4458 0.318762 TACAGGTATGCGCACACACA 59.681 50.000 21.95 0.00 0.00 3.72
2612 4460 0.374758 CAGGTATGCGCACACACATC 59.625 55.000 21.95 2.60 0.00 3.06
2627 4475 2.100631 CATCGCCGGTCAACTCCAC 61.101 63.158 1.90 0.00 0.00 4.02
2633 4481 1.066430 GCCGGTCAACTCCACATCTTA 60.066 52.381 1.90 0.00 0.00 2.10
2634 4482 2.618053 CCGGTCAACTCCACATCTTAC 58.382 52.381 0.00 0.00 0.00 2.34
2833 4681 4.699522 GTCCACCGCCCCAGTGAC 62.700 72.222 0.00 0.00 37.42 3.67
2979 4827 2.230130 TCTTTTGGGGCTTATGGGTG 57.770 50.000 0.00 0.00 0.00 4.61
3005 4862 0.771127 TGCCCCATACCCAGCTTATC 59.229 55.000 0.00 0.00 0.00 1.75
3031 4888 4.875536 GGCAGCCCAACCTAAATTTTATTG 59.124 41.667 0.00 0.00 0.00 1.90
3144 5078 5.350504 TGATCCTTTCTCTCTGATGTTCC 57.649 43.478 0.00 0.00 0.00 3.62
3145 5079 3.876274 TCCTTTCTCTCTGATGTTCCG 57.124 47.619 0.00 0.00 0.00 4.30
3198 5134 5.045869 AGCTAACTAACTGGCTGTTGGATAA 60.046 40.000 23.52 9.74 39.15 1.75
3485 5441 1.478105 GCAGCCATCCGATTTCCTTTT 59.522 47.619 0.00 0.00 0.00 2.27
3557 5513 4.976116 TCTGCATCTGTTCGTATGTTATCG 59.024 41.667 0.00 0.00 0.00 2.92
3615 5571 1.825090 ATGTGTGATGTTGATGGCGT 58.175 45.000 0.00 0.00 0.00 5.68
3772 5732 3.133901 ACATAACGCCTGGTCATGTATGA 59.866 43.478 0.00 0.00 0.00 2.15
3774 5734 2.024176 ACGCCTGGTCATGTATGAAC 57.976 50.000 2.97 2.97 44.66 3.18
3784 5744 0.255890 ATGTATGAACCGCTGCCCTT 59.744 50.000 0.00 0.00 0.00 3.95
3853 5819 8.906867 TGATGGAGAAAACATATCTGGATTTTC 58.093 33.333 0.00 0.00 40.01 2.29
3854 5820 7.645058 TGGAGAAAACATATCTGGATTTTCC 57.355 36.000 5.02 3.52 40.39 3.13
3855 5821 6.607198 TGGAGAAAACATATCTGGATTTTCCC 59.393 38.462 5.02 6.72 40.39 3.97
3856 5822 6.040955 GGAGAAAACATATCTGGATTTTCCCC 59.959 42.308 5.02 0.03 40.39 4.81
3954 6295 8.742125 ATACATGGAAGAAGTATATCAAGGGA 57.258 34.615 0.00 0.00 0.00 4.20
3985 6326 5.044550 AGTTCTAAGATGGGATTTGCTCCTT 60.045 40.000 0.00 0.00 44.28 3.36
3989 6330 4.261411 AGATGGGATTTGCTCCTTTGAT 57.739 40.909 0.00 0.00 44.28 2.57
3993 6334 5.128033 TGGGATTTGCTCCTTTGATGATA 57.872 39.130 0.00 0.00 44.28 2.15
3994 6335 5.517924 TGGGATTTGCTCCTTTGATGATAA 58.482 37.500 0.00 0.00 44.28 1.75
3998 6339 7.015001 GGGATTTGCTCCTTTGATGATAAAGAT 59.985 37.037 0.00 0.00 44.28 2.40
4037 6393 6.060136 CACTTGGTATCCATCATTGTCTGAT 58.940 40.000 0.00 0.00 45.78 2.90
4050 6480 9.595823 CATCATTGTCTGATCATACATATAGCA 57.404 33.333 14.01 0.00 42.91 3.49
4061 6539 6.340522 TCATACATATAGCATGACCGGAATG 58.659 40.000 9.46 13.14 0.00 2.67
4074 6581 2.359531 ACCGGAATGCAGAAACGAAAAA 59.640 40.909 9.46 0.00 0.00 1.94
4102 6609 9.726232 GAATAAAATCGGTAACAAGGAATAACC 57.274 33.333 0.00 0.00 39.35 2.85
4125 6632 5.710099 CCTGGTATTGTAATCAACCAGTTGT 59.290 40.000 18.41 0.00 41.88 3.32
4137 6644 4.097741 TCAACCAGTTGTTTCACAAGGATG 59.902 41.667 10.17 1.85 39.00 3.51
4149 6656 4.331968 TCACAAGGATGCCGATAAAAGTT 58.668 39.130 0.00 0.00 0.00 2.66
4157 6664 2.739913 TGCCGATAAAAGTTTCACCTCG 59.260 45.455 0.00 0.00 0.00 4.63
4160 6667 3.592059 CGATAAAAGTTTCACCTCGGGA 58.408 45.455 0.00 0.00 0.00 5.14
4166 6673 2.504367 AGTTTCACCTCGGGATTTGTG 58.496 47.619 0.00 0.00 0.00 3.33
4175 6682 3.430374 CCTCGGGATTTGTGAAGTATCGT 60.430 47.826 0.00 0.00 0.00 3.73
4185 6692 4.627058 TGTGAAGTATCGTGAAGCAAAGA 58.373 39.130 0.00 0.00 0.00 2.52
4228 6735 7.584123 CCAAGTTTCGCTCGATAAAAGATATTG 59.416 37.037 0.00 0.00 0.00 1.90
4260 6832 9.101655 GTAGTTTAGTAGAGAACTAGGAGACAG 57.898 40.741 0.00 0.00 41.70 3.51
4280 6852 4.018960 ACAGTGGAGTATGAGAAAAGGCAT 60.019 41.667 0.00 0.00 0.00 4.40
4290 6862 2.416893 GAGAAAAGGCATCGGAAGTGTC 59.583 50.000 0.00 0.00 0.00 3.67
4291 6863 2.039084 AGAAAAGGCATCGGAAGTGTCT 59.961 45.455 0.00 0.00 31.77 3.41
4292 6864 1.813513 AAAGGCATCGGAAGTGTCTG 58.186 50.000 0.00 0.00 30.72 3.51
4295 6867 1.296715 GCATCGGAAGTGTCTGGGT 59.703 57.895 0.00 0.00 0.00 4.51
4296 6868 0.535335 GCATCGGAAGTGTCTGGGTA 59.465 55.000 0.00 0.00 0.00 3.69
4297 6869 1.139058 GCATCGGAAGTGTCTGGGTAT 59.861 52.381 0.00 0.00 0.00 2.73
4328 6900 6.884280 AAATGTTTCGAGAGGTTTCAAGAT 57.116 33.333 0.00 0.00 0.00 2.40
4343 6915 2.846206 TCAAGATGGTCCCAGTAATGCT 59.154 45.455 0.00 0.00 0.00 3.79
4359 6931 6.970484 AGTAATGCTGAAAATGTTTCGAAGT 58.030 32.000 0.00 0.00 0.00 3.01
4376 6948 1.377856 GTTGCTCAGGGAGGCCTTC 60.378 63.158 6.77 3.67 0.00 3.46
4428 7000 3.994853 GCTGCCACCTTGGTTGCC 61.995 66.667 12.41 0.00 40.46 4.52
4432 7004 3.222855 CCACCTTGGTTGCCGCAA 61.223 61.111 0.38 0.38 31.35 4.85
4454 7026 1.991167 CATGGGCCCAAATGGTGCT 60.991 57.895 32.58 6.47 36.04 4.40
4462 7035 0.545071 CCAAATGGTGCTCCCCCTTT 60.545 55.000 1.59 0.00 0.00 3.11
4474 7047 2.514160 CTCCCCCTTTAGCTTATTGGGT 59.486 50.000 0.00 0.00 36.26 4.51
4529 7102 2.997463 CTCTAGGGGATCCTCCTCCTTA 59.003 54.545 21.24 7.05 37.93 2.69
4531 7104 3.598782 TCTAGGGGATCCTCCTCCTTATC 59.401 52.174 21.24 0.00 37.93 1.75
4609 7182 4.120755 CTGCTCCCTCCCCAAGCC 62.121 72.222 0.00 0.00 35.12 4.35
4629 7202 0.537371 GCACCCCATATGCCACCTAC 60.537 60.000 0.00 0.00 37.08 3.18
4630 7203 1.140312 CACCCCATATGCCACCTACT 58.860 55.000 0.00 0.00 0.00 2.57
4631 7204 1.072331 CACCCCATATGCCACCTACTC 59.928 57.143 0.00 0.00 0.00 2.59
4632 7205 0.693049 CCCCATATGCCACCTACTCC 59.307 60.000 0.00 0.00 0.00 3.85
4633 7206 0.693049 CCCATATGCCACCTACTCCC 59.307 60.000 0.00 0.00 0.00 4.30
4634 7207 1.734655 CCATATGCCACCTACTCCCT 58.265 55.000 0.00 0.00 0.00 4.20
4635 7208 1.625818 CCATATGCCACCTACTCCCTC 59.374 57.143 0.00 0.00 0.00 4.30
4636 7209 1.625818 CATATGCCACCTACTCCCTCC 59.374 57.143 0.00 0.00 0.00 4.30
4637 7210 0.469331 TATGCCACCTACTCCCTCCG 60.469 60.000 0.00 0.00 0.00 4.63
4638 7211 2.363925 GCCACCTACTCCCTCCGT 60.364 66.667 0.00 0.00 0.00 4.69
4639 7212 2.424733 GCCACCTACTCCCTCCGTC 61.425 68.421 0.00 0.00 0.00 4.79
4640 7213 1.757340 CCACCTACTCCCTCCGTCC 60.757 68.421 0.00 0.00 0.00 4.79
4641 7214 1.757340 CACCTACTCCCTCCGTCCC 60.757 68.421 0.00 0.00 0.00 4.46
4642 7215 2.243888 ACCTACTCCCTCCGTCCCA 61.244 63.158 0.00 0.00 0.00 4.37
4643 7216 1.233369 CCTACTCCCTCCGTCCCAT 59.767 63.158 0.00 0.00 0.00 4.00
4644 7217 0.481567 CCTACTCCCTCCGTCCCATA 59.518 60.000 0.00 0.00 0.00 2.74
4645 7218 1.133262 CCTACTCCCTCCGTCCCATAA 60.133 57.143 0.00 0.00 0.00 1.90
4646 7219 2.492940 CCTACTCCCTCCGTCCCATAAT 60.493 54.545 0.00 0.00 0.00 1.28
4647 7220 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
4648 7221 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
4649 7222 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
4650 7223 2.563179 CTCCCTCCGTCCCATAATGTAG 59.437 54.545 0.00 0.00 0.00 2.74
4651 7224 2.090943 TCCCTCCGTCCCATAATGTAGT 60.091 50.000 0.00 0.00 0.00 2.73
4652 7225 2.037251 CCCTCCGTCCCATAATGTAGTG 59.963 54.545 0.00 0.00 0.00 2.74
4653 7226 2.548067 CCTCCGTCCCATAATGTAGTGC 60.548 54.545 0.00 0.00 0.00 4.40
4654 7227 2.102420 CTCCGTCCCATAATGTAGTGCA 59.898 50.000 0.00 0.00 0.00 4.57
4655 7228 2.703536 TCCGTCCCATAATGTAGTGCAT 59.296 45.455 0.00 0.00 40.03 3.96
4656 7229 3.898741 TCCGTCCCATAATGTAGTGCATA 59.101 43.478 0.00 0.00 36.67 3.14
4657 7230 4.530553 TCCGTCCCATAATGTAGTGCATAT 59.469 41.667 0.00 0.00 36.67 1.78
4658 7231 4.631377 CCGTCCCATAATGTAGTGCATATG 59.369 45.833 0.00 0.00 36.67 1.78
4659 7232 4.631377 CGTCCCATAATGTAGTGCATATGG 59.369 45.833 12.86 12.86 37.85 2.74
4660 7233 5.568624 CGTCCCATAATGTAGTGCATATGGA 60.569 44.000 19.08 0.00 38.99 3.41
4661 7234 6.418101 GTCCCATAATGTAGTGCATATGGAT 58.582 40.000 19.08 1.08 38.99 3.41
4662 7235 6.886459 GTCCCATAATGTAGTGCATATGGATT 59.114 38.462 19.08 0.54 38.99 3.01
4663 7236 7.394359 GTCCCATAATGTAGTGCATATGGATTT 59.606 37.037 19.08 0.00 38.99 2.17
4664 7237 7.949565 TCCCATAATGTAGTGCATATGGATTTT 59.050 33.333 19.08 0.00 38.99 1.82
4665 7238 8.246180 CCCATAATGTAGTGCATATGGATTTTC 58.754 37.037 19.08 0.00 38.99 2.29
4666 7239 9.017509 CCATAATGTAGTGCATATGGATTTTCT 57.982 33.333 14.16 0.00 38.99 2.52
4685 7258 5.715434 TTCTTAAAAATCAAACCCCCTCG 57.285 39.130 0.00 0.00 0.00 4.63
4686 7259 4.988029 TCTTAAAAATCAAACCCCCTCGA 58.012 39.130 0.00 0.00 0.00 4.04
4687 7260 4.763279 TCTTAAAAATCAAACCCCCTCGAC 59.237 41.667 0.00 0.00 0.00 4.20
4688 7261 2.971901 AAAATCAAACCCCCTCGACT 57.028 45.000 0.00 0.00 0.00 4.18
4689 7262 2.971901 AAATCAAACCCCCTCGACTT 57.028 45.000 0.00 0.00 0.00 3.01
4690 7263 2.971901 AATCAAACCCCCTCGACTTT 57.028 45.000 0.00 0.00 0.00 2.66
4691 7264 2.200373 ATCAAACCCCCTCGACTTTG 57.800 50.000 0.00 0.00 0.00 2.77
4692 7265 1.133363 TCAAACCCCCTCGACTTTGA 58.867 50.000 0.00 0.00 31.68 2.69
4693 7266 1.071699 TCAAACCCCCTCGACTTTGAG 59.928 52.381 0.00 0.00 35.70 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 3.436704 CACTGTTGTCTGTTGTGTGAAGT 59.563 43.478 0.00 0.00 0.00 3.01
53 55 1.905215 CTCCCATCTCCTCACTGTTGT 59.095 52.381 0.00 0.00 0.00 3.32
68 70 1.296392 CACTCGCAACCATCTCCCA 59.704 57.895 0.00 0.00 0.00 4.37
134 139 3.243535 CGATTCACCATTCCTCTCGATGA 60.244 47.826 0.00 0.00 0.00 2.92
136 141 2.546795 GCGATTCACCATTCCTCTCGAT 60.547 50.000 0.00 0.00 0.00 3.59
172 177 0.249741 AAGACAAACCACTCGACCCG 60.250 55.000 0.00 0.00 0.00 5.28
198 203 7.591426 GTGCGATATCGTGATGATTAGCATATA 59.409 37.037 24.99 0.00 39.71 0.86
215 220 8.856490 AAATTGATTTGGTAAAGTGCGATATC 57.144 30.769 0.00 0.00 0.00 1.63
338 1751 4.307259 AGGACCATATAGAGCTTTGGGAA 58.693 43.478 0.00 0.00 33.39 3.97
341 1754 5.221722 TGCTTAGGACCATATAGAGCTTTGG 60.222 44.000 0.00 0.00 35.31 3.28
440 1854 1.682344 GGTGGGAAAGCATCACCCC 60.682 63.158 0.00 0.00 43.65 4.95
450 1865 5.360714 GCATTGAATCTAGATTGGTGGGAAA 59.639 40.000 22.61 5.98 0.00 3.13
472 1887 9.790389 CAAACCTAAATTATAAAATACCGTGCA 57.210 29.630 0.00 0.00 0.00 4.57
516 1931 5.702670 ACAGAATGATTGTAAGGTGTCACTG 59.297 40.000 2.35 0.00 39.69 3.66
519 1935 8.684386 TTTTACAGAATGATTGTAAGGTGTCA 57.316 30.769 0.00 0.00 40.81 3.58
647 2236 7.334421 TCAAGCTTGACATTCAGGTTTCTATAC 59.666 37.037 25.16 0.00 25.26 1.47
686 2275 1.134098 CCTGTCAACCGAATATGGCCT 60.134 52.381 3.32 0.00 0.00 5.19
687 2276 1.308998 CCTGTCAACCGAATATGGCC 58.691 55.000 0.00 0.00 0.00 5.36
688 2277 1.308998 CCCTGTCAACCGAATATGGC 58.691 55.000 0.00 0.00 0.00 4.40
689 2278 2.682856 CAACCCTGTCAACCGAATATGG 59.317 50.000 0.00 0.00 0.00 2.74
690 2279 3.126858 CACAACCCTGTCAACCGAATATG 59.873 47.826 0.00 0.00 31.64 1.78
691 2280 3.343617 CACAACCCTGTCAACCGAATAT 58.656 45.455 0.00 0.00 31.64 1.28
692 2281 2.551287 CCACAACCCTGTCAACCGAATA 60.551 50.000 0.00 0.00 31.64 1.75
693 2282 1.604604 CACAACCCTGTCAACCGAAT 58.395 50.000 0.00 0.00 31.64 3.34
694 2283 0.464735 CCACAACCCTGTCAACCGAA 60.465 55.000 0.00 0.00 31.64 4.30
695 2284 1.147376 CCACAACCCTGTCAACCGA 59.853 57.895 0.00 0.00 31.64 4.69
696 2285 0.884704 CTCCACAACCCTGTCAACCG 60.885 60.000 0.00 0.00 31.64 4.44
697 2286 0.537371 CCTCCACAACCCTGTCAACC 60.537 60.000 0.00 0.00 31.64 3.77
698 2287 0.537371 CCCTCCACAACCCTGTCAAC 60.537 60.000 0.00 0.00 31.64 3.18
699 2288 1.715019 CCCCTCCACAACCCTGTCAA 61.715 60.000 0.00 0.00 31.64 3.18
700 2289 2.153401 CCCCTCCACAACCCTGTCA 61.153 63.158 0.00 0.00 31.64 3.58
701 2290 1.716028 AACCCCTCCACAACCCTGTC 61.716 60.000 0.00 0.00 31.64 3.51
702 2291 1.293683 AAACCCCTCCACAACCCTGT 61.294 55.000 0.00 0.00 35.63 4.00
703 2292 0.105709 AAAACCCCTCCACAACCCTG 60.106 55.000 0.00 0.00 0.00 4.45
704 2293 0.105709 CAAAACCCCTCCACAACCCT 60.106 55.000 0.00 0.00 0.00 4.34
705 2294 0.105913 TCAAAACCCCTCCACAACCC 60.106 55.000 0.00 0.00 0.00 4.11
706 2295 1.037493 GTCAAAACCCCTCCACAACC 58.963 55.000 0.00 0.00 0.00 3.77
707 2296 1.681264 CTGTCAAAACCCCTCCACAAC 59.319 52.381 0.00 0.00 0.00 3.32
708 2297 1.410932 CCTGTCAAAACCCCTCCACAA 60.411 52.381 0.00 0.00 0.00 3.33
709 2298 0.184933 CCTGTCAAAACCCCTCCACA 59.815 55.000 0.00 0.00 0.00 4.17
710 2299 0.539669 CCCTGTCAAAACCCCTCCAC 60.540 60.000 0.00 0.00 0.00 4.02
711 2300 0.699577 TCCCTGTCAAAACCCCTCCA 60.700 55.000 0.00 0.00 0.00 3.86
712 2301 0.704664 ATCCCTGTCAAAACCCCTCC 59.295 55.000 0.00 0.00 0.00 4.30
713 2302 2.171003 CAATCCCTGTCAAAACCCCTC 58.829 52.381 0.00 0.00 0.00 4.30
714 2303 1.786441 TCAATCCCTGTCAAAACCCCT 59.214 47.619 0.00 0.00 0.00 4.79
715 2304 2.171003 CTCAATCCCTGTCAAAACCCC 58.829 52.381 0.00 0.00 0.00 4.95
716 2305 3.154827 TCTCAATCCCTGTCAAAACCC 57.845 47.619 0.00 0.00 0.00 4.11
717 2306 3.445096 CCATCTCAATCCCTGTCAAAACC 59.555 47.826 0.00 0.00 0.00 3.27
718 2307 4.335416 TCCATCTCAATCCCTGTCAAAAC 58.665 43.478 0.00 0.00 0.00 2.43
719 2308 4.656100 TCCATCTCAATCCCTGTCAAAA 57.344 40.909 0.00 0.00 0.00 2.44
720 2309 4.868172 ATCCATCTCAATCCCTGTCAAA 57.132 40.909 0.00 0.00 0.00 2.69
721 2310 4.868172 AATCCATCTCAATCCCTGTCAA 57.132 40.909 0.00 0.00 0.00 3.18
722 2311 5.974156 TTAATCCATCTCAATCCCTGTCA 57.026 39.130 0.00 0.00 0.00 3.58
723 2312 7.446001 GATTTAATCCATCTCAATCCCTGTC 57.554 40.000 0.00 0.00 0.00 3.51
739 2328 8.841300 GGGATTTGACTTGTAGAGGATTTAATC 58.159 37.037 0.00 0.00 0.00 1.75
740 2329 7.780271 GGGGATTTGACTTGTAGAGGATTTAAT 59.220 37.037 0.00 0.00 0.00 1.40
741 2330 7.116736 GGGGATTTGACTTGTAGAGGATTTAA 58.883 38.462 0.00 0.00 0.00 1.52
742 2331 6.353602 GGGGGATTTGACTTGTAGAGGATTTA 60.354 42.308 0.00 0.00 0.00 1.40
743 2332 5.510430 GGGGATTTGACTTGTAGAGGATTT 58.490 41.667 0.00 0.00 0.00 2.17
744 2333 4.079730 GGGGGATTTGACTTGTAGAGGATT 60.080 45.833 0.00 0.00 0.00 3.01
745 2334 3.459969 GGGGGATTTGACTTGTAGAGGAT 59.540 47.826 0.00 0.00 0.00 3.24
746 2335 2.844348 GGGGGATTTGACTTGTAGAGGA 59.156 50.000 0.00 0.00 0.00 3.71
747 2336 3.283259 GGGGGATTTGACTTGTAGAGG 57.717 52.381 0.00 0.00 0.00 3.69
764 2353 2.173569 CTGACCTAAGAGGATTTGGGGG 59.826 54.545 0.00 0.00 37.67 5.40
765 2354 2.173569 CCTGACCTAAGAGGATTTGGGG 59.826 54.545 0.00 0.00 37.67 4.96
766 2355 2.173569 CCCTGACCTAAGAGGATTTGGG 59.826 54.545 0.00 2.02 37.67 4.12
767 2356 2.846827 ACCCTGACCTAAGAGGATTTGG 59.153 50.000 0.00 0.00 37.67 3.28
768 2357 3.264450 ACACCCTGACCTAAGAGGATTTG 59.736 47.826 0.00 0.00 37.67 2.32
769 2358 3.532102 ACACCCTGACCTAAGAGGATTT 58.468 45.455 0.00 0.00 37.67 2.17
770 2359 3.207044 ACACCCTGACCTAAGAGGATT 57.793 47.619 0.00 0.00 37.67 3.01
771 2360 2.950990 ACACCCTGACCTAAGAGGAT 57.049 50.000 0.00 0.00 37.67 3.24
772 2361 3.438183 GTTACACCCTGACCTAAGAGGA 58.562 50.000 0.00 0.00 37.67 3.71
773 2362 2.500504 GGTTACACCCTGACCTAAGAGG 59.499 54.545 0.00 0.00 34.94 3.69
774 2363 2.165845 CGGTTACACCCTGACCTAAGAG 59.834 54.545 0.00 0.00 33.75 2.85
775 2364 2.173519 CGGTTACACCCTGACCTAAGA 58.826 52.381 0.00 0.00 33.75 2.10
776 2365 2.173519 TCGGTTACACCCTGACCTAAG 58.826 52.381 0.00 0.00 33.75 2.18
777 2366 2.299867 GTTCGGTTACACCCTGACCTAA 59.700 50.000 0.00 0.00 33.75 2.69
778 2367 1.895131 GTTCGGTTACACCCTGACCTA 59.105 52.381 0.00 0.00 33.75 3.08
779 2368 0.683412 GTTCGGTTACACCCTGACCT 59.317 55.000 0.00 0.00 33.75 3.85
780 2369 0.393820 TGTTCGGTTACACCCTGACC 59.606 55.000 0.00 0.00 33.75 4.02
781 2370 2.243602 TTGTTCGGTTACACCCTGAC 57.756 50.000 0.00 0.00 33.75 3.51
782 2371 2.841215 CTTTGTTCGGTTACACCCTGA 58.159 47.619 0.00 0.00 33.75 3.86
783 2372 1.265905 GCTTTGTTCGGTTACACCCTG 59.734 52.381 0.00 0.00 33.75 4.45
784 2373 1.601166 GCTTTGTTCGGTTACACCCT 58.399 50.000 0.00 0.00 33.75 4.34
785 2374 0.594602 GGCTTTGTTCGGTTACACCC 59.405 55.000 0.00 0.00 33.75 4.61
786 2375 1.265905 CAGGCTTTGTTCGGTTACACC 59.734 52.381 0.00 0.00 34.05 4.16
787 2376 1.265905 CCAGGCTTTGTTCGGTTACAC 59.734 52.381 0.00 0.00 0.00 2.90
788 2377 1.600023 CCAGGCTTTGTTCGGTTACA 58.400 50.000 0.00 0.00 0.00 2.41
789 2378 0.879090 CCCAGGCTTTGTTCGGTTAC 59.121 55.000 0.00 0.00 0.00 2.50
790 2379 0.766131 TCCCAGGCTTTGTTCGGTTA 59.234 50.000 0.00 0.00 0.00 2.85
791 2380 0.106419 TTCCCAGGCTTTGTTCGGTT 60.106 50.000 0.00 0.00 0.00 4.44
792 2381 0.106419 TTTCCCAGGCTTTGTTCGGT 60.106 50.000 0.00 0.00 0.00 4.69
793 2382 1.036707 TTTTCCCAGGCTTTGTTCGG 58.963 50.000 0.00 0.00 0.00 4.30
794 2383 1.407258 TGTTTTCCCAGGCTTTGTTCG 59.593 47.619 0.00 0.00 0.00 3.95
795 2384 2.803133 GCTGTTTTCCCAGGCTTTGTTC 60.803 50.000 0.00 0.00 32.92 3.18
796 2385 1.138859 GCTGTTTTCCCAGGCTTTGTT 59.861 47.619 0.00 0.00 32.92 2.83
797 2386 0.752658 GCTGTTTTCCCAGGCTTTGT 59.247 50.000 0.00 0.00 32.92 2.83
798 2387 1.043022 AGCTGTTTTCCCAGGCTTTG 58.957 50.000 0.00 0.00 32.92 2.77
799 2388 1.043022 CAGCTGTTTTCCCAGGCTTT 58.957 50.000 5.25 0.00 32.92 3.51
800 2389 1.466851 GCAGCTGTTTTCCCAGGCTT 61.467 55.000 16.64 0.00 32.92 4.35
801 2390 1.905354 GCAGCTGTTTTCCCAGGCT 60.905 57.895 16.64 0.00 32.92 4.58
802 2391 2.151049 CTGCAGCTGTTTTCCCAGGC 62.151 60.000 16.64 0.00 32.92 4.85
803 2392 0.538057 TCTGCAGCTGTTTTCCCAGG 60.538 55.000 16.64 0.00 32.92 4.45
807 2396 2.294233 TGTTGATCTGCAGCTGTTTTCC 59.706 45.455 16.64 3.21 0.00 3.13
816 2405 2.350522 GGTGGTAGTGTTGATCTGCAG 58.649 52.381 7.63 7.63 0.00 4.41
827 2416 4.446413 GGGACGGCGGTGGTAGTG 62.446 72.222 13.24 0.00 0.00 2.74
889 2478 6.268847 TGCAAATGTACCTACAAAATCCCTTT 59.731 34.615 0.00 0.00 39.99 3.11
890 2479 5.777732 TGCAAATGTACCTACAAAATCCCTT 59.222 36.000 0.00 0.00 39.99 3.95
917 2508 0.454600 CCGCGGTACTCTCAGCTTTA 59.545 55.000 19.50 0.00 0.00 1.85
1074 2910 7.977789 AACTCCATTTTTCTTTTGTTTGTGT 57.022 28.000 0.00 0.00 0.00 3.72
1590 3426 2.667418 GCAGAGAAGAGCAGGCCA 59.333 61.111 5.01 0.00 0.00 5.36
1592 3428 2.511145 CGGCAGAGAAGAGCAGGC 60.511 66.667 0.00 0.00 0.00 4.85
1593 3429 2.511145 GCGGCAGAGAAGAGCAGG 60.511 66.667 0.00 0.00 0.00 4.85
1608 3444 2.362889 AGGGGAAAATGGCTGGCG 60.363 61.111 0.00 0.00 0.00 5.69
1644 3480 2.290367 CGCACACCAAGAATTCACAGAA 59.710 45.455 8.44 0.00 0.00 3.02
1747 3583 1.227823 CCTCACGAACTTGCCACCA 60.228 57.895 0.00 0.00 0.00 4.17
1826 3662 4.741676 GGCAATTGAGAATTAGCAAATCCG 59.258 41.667 10.34 0.00 31.18 4.18
1828 3664 8.931385 TTTAGGCAATTGAGAATTAGCAAATC 57.069 30.769 10.34 0.00 31.18 2.17
1888 3724 1.473965 CGCTGCTCTCTCTCTCTCTCT 60.474 57.143 0.00 0.00 0.00 3.10
1889 3725 0.940126 CGCTGCTCTCTCTCTCTCTC 59.060 60.000 0.00 0.00 0.00 3.20
1890 3726 1.097547 GCGCTGCTCTCTCTCTCTCT 61.098 60.000 0.00 0.00 0.00 3.10
1891 3727 1.097547 AGCGCTGCTCTCTCTCTCTC 61.098 60.000 10.39 0.00 30.62 3.20
1892 3728 1.077501 AGCGCTGCTCTCTCTCTCT 60.078 57.895 10.39 0.00 30.62 3.10
1893 3729 3.513225 AGCGCTGCTCTCTCTCTC 58.487 61.111 10.39 0.00 30.62 3.20
1913 3749 3.186613 CGTTTTCAGTCAACTAAGGCCTC 59.813 47.826 5.23 0.00 0.00 4.70
1955 3791 5.614324 TCTCTCTCTCTACTCTCCTGAAG 57.386 47.826 0.00 0.00 0.00 3.02
1995 3831 1.434188 TTTTCAGTCCTGAGGCCTCA 58.566 50.000 33.04 33.04 41.13 3.86
2014 3852 6.287589 AGAATCGACTAACCTGAAGTTCAT 57.712 37.500 5.91 0.00 40.05 2.57
2015 3853 5.723672 AGAATCGACTAACCTGAAGTTCA 57.276 39.130 5.25 5.25 40.05 3.18
2039 3877 3.546724 TCACTCTGTCTCTATTCTCCCG 58.453 50.000 0.00 0.00 0.00 5.14
2046 3884 4.278170 GTGCTGCTATCACTCTGTCTCTAT 59.722 45.833 0.00 0.00 0.00 1.98
2058 3904 1.679944 GGCCTTTGAGTGCTGCTATCA 60.680 52.381 0.00 2.07 0.00 2.15
2061 3907 0.110295 TTGGCCTTTGAGTGCTGCTA 59.890 50.000 3.32 0.00 0.00 3.49
2111 3957 0.614697 TCATCCTCGGCTGAGTTGGA 60.615 55.000 21.06 12.80 40.85 3.53
2115 3961 1.786937 ATTCTCATCCTCGGCTGAGT 58.213 50.000 21.06 0.36 40.85 3.41
2117 3963 2.110578 TGAATTCTCATCCTCGGCTGA 58.889 47.619 7.05 0.00 0.00 4.26
2144 3990 0.114168 CTGAAATTGTCCCCCACCCA 59.886 55.000 0.00 0.00 0.00 4.51
2224 4070 4.459089 GTGAGGTCCTGGCTCGCC 62.459 72.222 0.00 0.00 0.00 5.54
2260 4106 2.420890 CTCTCCTCTGGCGGCATC 59.579 66.667 13.85 0.00 0.00 3.91
2280 4126 4.814294 CTTTCCGTCTCGCCCCCG 62.814 72.222 0.00 0.00 0.00 5.73
2288 4134 1.204941 CACCCGATCTTCTTTCCGTCT 59.795 52.381 0.00 0.00 0.00 4.18
2289 4135 1.641577 CACCCGATCTTCTTTCCGTC 58.358 55.000 0.00 0.00 0.00 4.79
2290 4136 0.249398 CCACCCGATCTTCTTTCCGT 59.751 55.000 0.00 0.00 0.00 4.69
2308 4154 1.002773 TGCTTCGTCTTACTTTCCCCC 59.997 52.381 0.00 0.00 0.00 5.40
2312 4158 3.613299 GGCTACTGCTTCGTCTTACTTTC 59.387 47.826 0.00 0.00 39.59 2.62
2313 4159 3.586892 GGCTACTGCTTCGTCTTACTTT 58.413 45.455 0.00 0.00 39.59 2.66
2314 4160 2.415625 CGGCTACTGCTTCGTCTTACTT 60.416 50.000 0.00 0.00 39.59 2.24
2315 4161 1.132643 CGGCTACTGCTTCGTCTTACT 59.867 52.381 0.00 0.00 39.59 2.24
2317 4163 1.171308 ACGGCTACTGCTTCGTCTTA 58.829 50.000 0.00 0.00 39.59 2.10
2320 4166 1.956620 GCAACGGCTACTGCTTCGTC 61.957 60.000 0.00 0.00 36.40 4.20
2388 4235 8.135529 ACAAAACAGAAGCCTATAAAACAGTTC 58.864 33.333 0.00 0.00 0.00 3.01
2407 4255 6.463995 ACAAGCTTTGGATTAGACAAAACA 57.536 33.333 0.00 0.00 37.37 2.83
2438 4286 2.235546 GTCCTGCACAAAGACGGAC 58.764 57.895 3.57 3.57 37.57 4.79
2449 4297 2.605837 TTGTTGTACTTCGTCCTGCA 57.394 45.000 0.00 0.00 0.00 4.41
2450 4298 2.223377 CCTTTGTTGTACTTCGTCCTGC 59.777 50.000 0.00 0.00 0.00 4.85
2553 4401 1.534235 ACACACCTTCCGAGAGCCT 60.534 57.895 0.00 0.00 0.00 4.58
2577 4425 1.637934 CTGTATGTCCGCATGCACG 59.362 57.895 19.57 6.99 41.59 5.34
2583 4431 0.249280 CGCATACCTGTATGTCCGCA 60.249 55.000 16.38 0.00 43.57 5.69
2592 4440 0.321564 ATGTGTGTGCGCATACCTGT 60.322 50.000 30.70 15.52 43.30 4.00
2602 4450 3.788766 GACCGGCGATGTGTGTGC 61.789 66.667 9.30 0.00 0.00 4.57
2610 4458 1.899437 ATGTGGAGTTGACCGGCGAT 61.899 55.000 9.30 0.00 0.00 4.58
2612 4460 2.047274 ATGTGGAGTTGACCGGCG 60.047 61.111 0.00 0.00 0.00 6.46
2615 4463 2.618053 GGTAAGATGTGGAGTTGACCG 58.382 52.381 0.00 0.00 0.00 4.79
2618 4466 2.838202 GGAGGGTAAGATGTGGAGTTGA 59.162 50.000 0.00 0.00 0.00 3.18
2652 4500 3.550842 GCAGGCAAACATTTCTTCGAGTT 60.551 43.478 0.00 0.00 0.00 3.01
2657 4505 2.589014 CGAGCAGGCAAACATTTCTTC 58.411 47.619 0.00 0.00 0.00 2.87
2701 4549 1.722034 ACTTGGAGCAGGAGAAGTGA 58.278 50.000 0.00 0.00 0.00 3.41
2992 4849 1.701847 CTGCCAGGATAAGCTGGGTAT 59.298 52.381 0.00 0.00 40.87 2.73
3005 4862 0.324645 ATTTAGGTTGGGCTGCCAGG 60.325 55.000 22.05 0.00 0.00 4.45
3031 4888 7.942990 ACAACATCATAGTAGTAGGCTTCTAC 58.057 38.462 20.02 20.02 42.71 2.59
3144 5078 6.475076 CAGAGAGAAAGGATCAGTCAATAACG 59.525 42.308 0.00 0.00 0.00 3.18
3145 5079 7.551585 TCAGAGAGAAAGGATCAGTCAATAAC 58.448 38.462 0.00 0.00 0.00 1.89
3485 5441 7.575155 GCAGATGAGTACAGTTAGTGACAACTA 60.575 40.741 0.00 0.00 36.61 2.24
3557 5513 1.741145 CTTTAACCACATACACGGGCC 59.259 52.381 0.00 0.00 0.00 5.80
3615 5571 5.883673 CCCCCAATATTAACTCTTCGTTCAA 59.116 40.000 0.00 0.00 37.05 2.69
3772 5732 0.679960 GATAACCAAGGGCAGCGGTT 60.680 55.000 7.50 7.50 44.98 4.44
3774 5734 0.815615 GAGATAACCAAGGGCAGCGG 60.816 60.000 0.00 0.00 0.00 5.52
3784 5744 2.551270 ACCTTGCTCCAGAGATAACCA 58.449 47.619 0.00 0.00 0.00 3.67
3854 5820 6.493115 TGCATTTATGTACAAGAATATGGGGG 59.507 38.462 0.00 0.00 0.00 5.40
3855 5821 7.523293 TGCATTTATGTACAAGAATATGGGG 57.477 36.000 0.00 0.00 0.00 4.96
3856 5822 9.985730 AAATGCATTTATGTACAAGAATATGGG 57.014 29.630 22.95 0.00 0.00 4.00
3896 6187 5.820423 CCTTATGTCACCATTTACGGAATCA 59.180 40.000 0.00 0.00 32.29 2.57
3897 6188 5.820947 ACCTTATGTCACCATTTACGGAATC 59.179 40.000 0.00 0.00 32.29 2.52
3898 6189 5.751586 ACCTTATGTCACCATTTACGGAAT 58.248 37.500 0.00 0.00 32.29 3.01
3915 6252 8.246430 TCTTCCATGTATCGAAGTTACCTTAT 57.754 34.615 8.65 0.00 37.38 1.73
3916 6253 7.649533 TCTTCCATGTATCGAAGTTACCTTA 57.350 36.000 8.65 0.00 37.38 2.69
3917 6254 6.540438 TCTTCCATGTATCGAAGTTACCTT 57.460 37.500 8.65 0.00 37.38 3.50
3919 6256 6.338937 ACTTCTTCCATGTATCGAAGTTACC 58.661 40.000 8.65 0.00 40.82 2.85
3922 6259 9.915629 GATATACTTCTTCCATGTATCGAAGTT 57.084 33.333 16.70 10.44 40.82 2.66
3923 6260 9.078990 TGATATACTTCTTCCATGTATCGAAGT 57.921 33.333 16.10 16.10 44.43 3.01
3924 6261 9.914131 TTGATATACTTCTTCCATGTATCGAAG 57.086 33.333 0.00 3.74 37.44 3.79
3925 6262 9.914131 CTTGATATACTTCTTCCATGTATCGAA 57.086 33.333 0.00 0.00 30.05 3.71
3926 6263 8.523658 CCTTGATATACTTCTTCCATGTATCGA 58.476 37.037 0.00 0.00 30.05 3.59
3927 6264 7.761704 CCCTTGATATACTTCTTCCATGTATCG 59.238 40.741 0.00 0.00 30.05 2.92
3954 6295 6.893020 AATCCCATCTTAGAACTACCAAGT 57.107 37.500 0.00 0.00 37.65 3.16
3959 6300 5.760743 GGAGCAAATCCCATCTTAGAACTAC 59.239 44.000 0.00 0.00 43.01 2.73
3960 6301 5.930135 GGAGCAAATCCCATCTTAGAACTA 58.070 41.667 0.00 0.00 43.01 2.24
3961 6302 4.786425 GGAGCAAATCCCATCTTAGAACT 58.214 43.478 0.00 0.00 43.01 3.01
3998 6339 2.241176 CCAAGTGGGCCCAAAGAGTATA 59.759 50.000 30.64 0.00 0.00 1.47
4010 6358 2.624838 CAATGATGGATACCAAGTGGGC 59.375 50.000 1.69 0.00 42.05 5.36
4037 6393 5.993748 TTCCGGTCATGCTATATGTATGA 57.006 39.130 0.00 0.00 43.71 2.15
4050 6480 1.086696 CGTTTCTGCATTCCGGTCAT 58.913 50.000 0.00 0.00 0.00 3.06
4097 6604 8.113462 AACTGGTTGATTACAATACCAGGTTAT 58.887 33.333 20.42 7.72 46.56 1.89
4098 6605 7.392113 CAACTGGTTGATTACAATACCAGGTTA 59.608 37.037 20.42 0.00 46.56 2.85
4099 6606 6.208599 CAACTGGTTGATTACAATACCAGGTT 59.791 38.462 20.42 12.91 46.56 3.50
4125 6632 4.764823 ACTTTTATCGGCATCCTTGTGAAA 59.235 37.500 0.00 0.00 0.00 2.69
4137 6644 2.095372 CCGAGGTGAAACTTTTATCGGC 59.905 50.000 0.00 0.00 41.36 5.54
4149 6656 2.105821 ACTTCACAAATCCCGAGGTGAA 59.894 45.455 0.00 0.00 45.12 3.18
4157 6664 4.201822 GCTTCACGATACTTCACAAATCCC 60.202 45.833 0.00 0.00 0.00 3.85
4160 6667 5.940192 TTGCTTCACGATACTTCACAAAT 57.060 34.783 0.00 0.00 0.00 2.32
4166 6673 6.074005 CAGTTTCTTTGCTTCACGATACTTC 58.926 40.000 0.00 0.00 0.00 3.01
4175 6682 3.242608 GCGTACACAGTTTCTTTGCTTCA 60.243 43.478 0.00 0.00 0.00 3.02
4185 6692 1.752683 TGGGTTTGCGTACACAGTTT 58.247 45.000 0.00 0.00 0.00 2.66
4228 6735 9.108284 CCTAGTTCTCTACTAAACTACTACACC 57.892 40.741 0.00 0.00 38.84 4.16
4241 6813 4.536888 TCCACTGTCTCCTAGTTCTCTACT 59.463 45.833 0.00 0.00 41.04 2.57
4260 6832 3.557595 CGATGCCTTTTCTCATACTCCAC 59.442 47.826 0.00 0.00 0.00 4.02
4280 6852 4.320870 GAAAAATACCCAGACACTTCCGA 58.679 43.478 0.00 0.00 0.00 4.55
4290 6862 6.858993 TCGAAACATTTTCGAAAAATACCCAG 59.141 34.615 25.77 14.71 46.35 4.45
4291 6863 6.736123 TCGAAACATTTTCGAAAAATACCCA 58.264 32.000 25.77 2.95 46.35 4.51
4315 6887 2.307098 CTGGGACCATCTTGAAACCTCT 59.693 50.000 0.00 0.00 0.00 3.69
4343 6915 5.242069 TGAGCAACTTCGAAACATTTTCA 57.758 34.783 0.00 0.00 0.00 2.69
4359 6931 2.959484 CGAAGGCCTCCCTGAGCAA 61.959 63.158 5.23 0.00 41.90 3.91
4376 6948 1.641577 GGAATCTTCCACGACCTTCG 58.358 55.000 4.05 0.00 46.76 3.79
4431 7003 1.200092 CCATTTGGGCCCATGTGGTT 61.200 55.000 33.14 13.29 36.04 3.67
4432 7004 1.613035 CCATTTGGGCCCATGTGGT 60.613 57.895 33.14 15.65 36.04 4.16
4454 7026 2.580232 ACCCAATAAGCTAAAGGGGGA 58.420 47.619 15.06 0.00 43.96 4.81
4462 7035 5.034200 TCCACTTCCTTACCCAATAAGCTA 58.966 41.667 0.00 0.00 39.29 3.32
4474 7047 0.984230 CCCACAGCTCCACTTCCTTA 59.016 55.000 0.00 0.00 0.00 2.69
4529 7102 1.153369 CGTCCCTTCCATGTGCGAT 60.153 57.895 0.00 0.00 0.00 4.58
4531 7104 2.593468 ATCCGTCCCTTCCATGTGCG 62.593 60.000 0.00 0.00 0.00 5.34
4609 7182 2.050836 TAGGTGGCATATGGGGTGCG 62.051 60.000 4.56 0.00 43.40 5.34
4617 7190 1.827647 CGGAGGGAGTAGGTGGCATAT 60.828 57.143 0.00 0.00 0.00 1.78
4629 7202 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
4630 7203 2.090943 ACTACATTATGGGACGGAGGGA 60.091 50.000 0.00 0.00 0.00 4.20
4631 7204 2.037251 CACTACATTATGGGACGGAGGG 59.963 54.545 0.00 0.00 0.00 4.30
4632 7205 2.548067 GCACTACATTATGGGACGGAGG 60.548 54.545 0.00 0.00 0.00 4.30
4633 7206 2.102420 TGCACTACATTATGGGACGGAG 59.898 50.000 0.00 0.00 0.00 4.63
4634 7207 2.112190 TGCACTACATTATGGGACGGA 58.888 47.619 0.00 0.00 0.00 4.69
4635 7208 2.613026 TGCACTACATTATGGGACGG 57.387 50.000 0.00 0.00 0.00 4.79
4636 7209 4.631377 CCATATGCACTACATTATGGGACG 59.369 45.833 12.21 0.00 40.38 4.79
4637 7210 5.804639 TCCATATGCACTACATTATGGGAC 58.195 41.667 17.64 0.00 40.38 4.46
4638 7211 6.641161 ATCCATATGCACTACATTATGGGA 57.359 37.500 17.64 8.37 40.38 4.37
4639 7212 7.707624 AAATCCATATGCACTACATTATGGG 57.292 36.000 17.64 4.32 40.38 4.00
4640 7213 9.017509 AGAAAATCCATATGCACTACATTATGG 57.982 33.333 13.43 13.43 40.38 2.74
4660 7233 7.015779 TCGAGGGGGTTTGATTTTTAAGAAAAT 59.984 33.333 0.00 0.00 45.62 1.82
4661 7234 6.324254 TCGAGGGGGTTTGATTTTTAAGAAAA 59.676 34.615 0.00 0.00 38.96 2.29
4662 7235 5.834204 TCGAGGGGGTTTGATTTTTAAGAAA 59.166 36.000 0.00 0.00 0.00 2.52
4663 7236 5.242171 GTCGAGGGGGTTTGATTTTTAAGAA 59.758 40.000 0.00 0.00 0.00 2.52
4664 7237 4.763279 GTCGAGGGGGTTTGATTTTTAAGA 59.237 41.667 0.00 0.00 0.00 2.10
4665 7238 4.765339 AGTCGAGGGGGTTTGATTTTTAAG 59.235 41.667 0.00 0.00 0.00 1.85
4666 7239 4.732065 AGTCGAGGGGGTTTGATTTTTAA 58.268 39.130 0.00 0.00 0.00 1.52
4667 7240 4.376225 AGTCGAGGGGGTTTGATTTTTA 57.624 40.909 0.00 0.00 0.00 1.52
4668 7241 3.238788 AGTCGAGGGGGTTTGATTTTT 57.761 42.857 0.00 0.00 0.00 1.94
4669 7242 2.971901 AGTCGAGGGGGTTTGATTTT 57.028 45.000 0.00 0.00 0.00 1.82
4670 7243 2.890945 CAAAGTCGAGGGGGTTTGATTT 59.109 45.455 0.00 0.00 32.65 2.17
4671 7244 2.107552 TCAAAGTCGAGGGGGTTTGATT 59.892 45.455 0.00 0.00 34.72 2.57
4672 7245 1.702957 TCAAAGTCGAGGGGGTTTGAT 59.297 47.619 0.00 0.00 34.72 2.57
4673 7246 1.071699 CTCAAAGTCGAGGGGGTTTGA 59.928 52.381 0.00 0.00 36.74 2.69
4674 7247 1.523758 CTCAAAGTCGAGGGGGTTTG 58.476 55.000 0.00 0.00 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.