Multiple sequence alignment - TraesCS5D01G320400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G320400 chr5D 100.000 4605 0 0 1 4605 412603219 412598615 0.000000e+00 8504.0
1 TraesCS5D01G320400 chr5D 93.701 127 7 1 4480 4605 257239225 257239099 6.080000e-44 189.0
2 TraesCS5D01G320400 chr5B 92.681 1544 65 21 1878 3386 496981729 496980199 0.000000e+00 2182.0
3 TraesCS5D01G320400 chr5B 89.669 1510 62 38 8 1463 496983495 496982026 0.000000e+00 1838.0
4 TraesCS5D01G320400 chr5B 89.913 803 47 18 3388 4173 496980149 496979364 0.000000e+00 1003.0
5 TraesCS5D01G320400 chr5B 91.822 269 16 3 1582 1850 496981976 496981714 2.020000e-98 370.0
6 TraesCS5D01G320400 chr5B 86.222 225 11 8 4269 4491 496978742 496978536 4.640000e-55 226.0
7 TraesCS5D01G320400 chr5B 85.778 225 12 8 4269 4491 496979273 496979067 2.160000e-53 220.0
8 TraesCS5D01G320400 chr5B 93.478 92 3 2 3920 4010 57704859 57704770 2.890000e-27 134.0
9 TraesCS5D01G320400 chr5B 91.398 93 6 2 3923 4014 57707394 57707303 4.840000e-25 126.0
10 TraesCS5D01G320400 chr5A 86.207 1537 87 43 244 1710 524674722 524673241 0.000000e+00 1548.0
11 TraesCS5D01G320400 chr5A 86.456 886 51 19 1880 2740 524673148 524672307 0.000000e+00 907.0
12 TraesCS5D01G320400 chr5A 92.129 559 36 7 2811 3363 524672093 524671537 0.000000e+00 782.0
13 TraesCS5D01G320400 chr5A 87.126 668 49 19 3401 4060 524671451 524670813 0.000000e+00 723.0
14 TraesCS5D01G320400 chr5A 85.851 417 23 12 4079 4491 524669762 524669378 1.190000e-110 411.0
15 TraesCS5D01G320400 chr5A 86.973 261 15 5 1 247 524708528 524708273 4.540000e-70 276.0
16 TraesCS5D01G320400 chr5A 96.552 116 4 0 4490 4605 626130148 626130263 4.700000e-45 193.0
17 TraesCS5D01G320400 chr5A 92.473 93 5 2 3920 4011 43543882 43543791 1.040000e-26 132.0
18 TraesCS5D01G320400 chr7A 83.270 263 42 2 3090 3351 275960964 275960703 1.660000e-59 241.0
19 TraesCS5D01G320400 chr7A 95.726 117 5 0 4489 4605 466018490 466018374 6.080000e-44 189.0
20 TraesCS5D01G320400 chr7A 94.215 121 7 0 4485 4605 20976025 20975905 7.870000e-43 185.0
21 TraesCS5D01G320400 chr7A 95.506 89 2 2 3922 4008 504736351 504736263 1.730000e-29 141.0
22 TraesCS5D01G320400 chr3D 95.082 122 6 0 4484 4605 161623002 161622881 4.700000e-45 193.0
23 TraesCS5D01G320400 chr3D 96.522 115 4 0 4491 4605 144583366 144583252 1.690000e-44 191.0
24 TraesCS5D01G320400 chr3D 90.647 139 9 3 4469 4605 272918526 272918390 1.020000e-41 182.0
25 TraesCS5D01G320400 chr3D 93.069 101 0 5 3911 4007 546672618 546672715 1.730000e-29 141.0
26 TraesCS5D01G320400 chr6A 95.726 117 5 0 4489 4605 408052903 408053019 6.080000e-44 189.0
27 TraesCS5D01G320400 chr4D 89.928 139 12 2 4468 4605 266475847 266475984 1.320000e-40 178.0
28 TraesCS5D01G320400 chr4D 97.222 72 2 0 3923 3994 82235723 82235794 6.260000e-24 122.0
29 TraesCS5D01G320400 chr1A 94.444 90 3 2 3915 4003 539686977 539687065 2.230000e-28 137.0
30 TraesCS5D01G320400 chr2D 82.400 125 15 6 1156 1278 511528626 511528507 8.150000e-18 102.0
31 TraesCS5D01G320400 chr2A 82.258 124 17 4 1156 1278 654875612 654875493 8.150000e-18 102.0
32 TraesCS5D01G320400 chr2B 81.600 125 16 6 1156 1278 600709091 600708972 3.790000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G320400 chr5D 412598615 412603219 4604 True 8504.000000 8504 100.0000 1 4605 1 chr5D.!!$R2 4604
1 TraesCS5D01G320400 chr5B 496978536 496983495 4959 True 973.166667 2182 89.3475 8 4491 6 chr5B.!!$R2 4483
2 TraesCS5D01G320400 chr5A 524669378 524674722 5344 True 874.200000 1548 87.5538 244 4491 5 chr5A.!!$R3 4247

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
688 737 0.250793 ACCGAAACACCACTCACACA 59.749 50.0 0.00 0.0 0.00 3.72 F
1380 1499 0.109132 CTTGAGGTGAAATTGGGCGC 60.109 55.0 0.00 0.0 0.00 6.53 F
1427 1549 0.247537 GGTTGTTTTATCCGCGCTCG 60.248 55.0 5.56 0.0 0.00 5.03 F
1580 1702 0.318762 GACTTTCCTCCGTCTGCTGT 59.681 55.0 0.00 0.0 0.00 4.40 F
2907 3282 0.320073 TGTCCGCACTTTTCCTACGG 60.320 55.0 0.00 0.0 45.15 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1562 1684 0.034059 CACAGCAGACGGAGGAAAGT 59.966 55.0 0.00 0.0 0.00 2.66 R
2859 3234 0.242825 CGCCGAAACCAGACAGTAGA 59.757 55.0 0.00 0.0 0.00 2.59 R
3226 3607 0.402504 ACCAACCGAATTGTGGCCTA 59.597 50.0 3.32 0.0 36.47 3.93 R
3523 3985 0.673644 CGTCATTCCCGTTCTTGCCT 60.674 55.0 0.00 0.0 0.00 4.75 R
4495 6533 0.179004 ATCCACAGCCGAACCAAACA 60.179 50.0 0.00 0.0 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 109 2.391389 CGGCGAGGTGGAAGAAAGC 61.391 63.158 0.00 0.00 0.00 3.51
129 132 2.126189 GTCGGTCGGTGCTGGTAC 60.126 66.667 0.00 0.00 0.00 3.34
130 133 2.598099 TCGGTCGGTGCTGGTACA 60.598 61.111 0.00 0.00 0.00 2.90
152 156 0.994247 TGGATGATGAGTGCTTGGGT 59.006 50.000 0.00 0.00 0.00 4.51
207 211 2.103042 GCTACAGCGAGGCCAGTTG 61.103 63.158 5.01 9.67 0.00 3.16
210 214 0.320421 TACAGCGAGGCCAGTTGAAC 60.320 55.000 18.90 0.00 0.00 3.18
224 228 4.587189 GAACCTCCGGCCGGATCG 62.587 72.222 45.15 36.66 44.24 3.69
260 264 0.368907 ACGTACACGCGCATGAAATC 59.631 50.000 11.87 0.00 44.43 2.17
277 281 3.425577 AATCAATGCATGCAACGTAGG 57.574 42.857 26.68 10.53 0.00 3.18
282 286 2.004583 TGCATGCAACGTAGGAGTAC 57.995 50.000 20.30 0.00 0.00 2.73
283 287 1.273886 TGCATGCAACGTAGGAGTACA 59.726 47.619 20.30 0.00 0.00 2.90
288 292 4.430137 TGCAACGTAGGAGTACAAGTAG 57.570 45.455 0.00 0.00 0.00 2.57
290 294 4.164294 GCAACGTAGGAGTACAAGTAGTG 58.836 47.826 0.00 0.00 0.00 2.74
291 295 4.730657 CAACGTAGGAGTACAAGTAGTGG 58.269 47.826 0.00 0.00 0.00 4.00
346 350 4.440127 ATTTACGGCGCGGTCGGT 62.440 61.111 24.73 8.44 33.75 4.69
391 396 2.514013 GCGGCAATGTACGAGACCG 61.514 63.158 11.52 11.52 43.37 4.79
415 420 2.511600 GAACCGGAGCGACCCATG 60.512 66.667 9.46 0.00 34.64 3.66
425 430 1.153289 CGACCCATGGAGAAGCTGG 60.153 63.158 15.22 0.00 0.00 4.85
426 431 1.903877 CGACCCATGGAGAAGCTGGT 61.904 60.000 15.22 0.00 0.00 4.00
427 432 0.393537 GACCCATGGAGAAGCTGGTG 60.394 60.000 15.22 0.00 0.00 4.17
428 433 1.077212 CCCATGGAGAAGCTGGTGG 60.077 63.158 15.22 0.00 0.00 4.61
429 434 1.751927 CCATGGAGAAGCTGGTGGC 60.752 63.158 5.56 0.00 42.19 5.01
430 435 1.001764 CATGGAGAAGCTGGTGGCA 60.002 57.895 0.00 0.00 44.79 4.92
431 436 1.001641 ATGGAGAAGCTGGTGGCAC 60.002 57.895 9.70 9.70 44.79 5.01
432 437 2.743928 GGAGAAGCTGGTGGCACG 60.744 66.667 12.17 0.00 44.79 5.34
433 438 2.031163 GAGAAGCTGGTGGCACGT 59.969 61.111 12.17 0.00 44.79 4.49
434 439 1.292223 GAGAAGCTGGTGGCACGTA 59.708 57.895 12.17 2.11 44.79 3.57
435 440 1.004918 AGAAGCTGGTGGCACGTAC 60.005 57.895 12.17 2.82 44.79 3.67
436 441 2.357034 AAGCTGGTGGCACGTACG 60.357 61.111 15.01 15.01 44.79 3.67
437 442 3.159858 AAGCTGGTGGCACGTACGT 62.160 57.895 16.72 16.72 44.79 3.57
438 443 1.808531 AAGCTGGTGGCACGTACGTA 61.809 55.000 22.34 2.28 44.79 3.57
439 444 2.090524 GCTGGTGGCACGTACGTAC 61.091 63.158 22.34 16.05 41.35 3.67
688 737 0.250793 ACCGAAACACCACTCACACA 59.749 50.000 0.00 0.00 0.00 3.72
690 739 0.300491 CGAAACACCACTCACACACG 59.700 55.000 0.00 0.00 0.00 4.49
691 740 0.655733 GAAACACCACTCACACACGG 59.344 55.000 0.00 0.00 0.00 4.94
693 742 0.461339 AACACCACTCACACACGGAC 60.461 55.000 0.00 0.00 0.00 4.79
694 743 1.327690 ACACCACTCACACACGGACT 61.328 55.000 0.00 0.00 0.00 3.85
728 777 2.665185 GACGGACAGCAACGCCTT 60.665 61.111 0.00 0.00 0.00 4.35
807 870 4.265056 ACCCACCCACCGTTGCTC 62.265 66.667 0.00 0.00 0.00 4.26
845 908 1.666209 CCCCGCGCATCATTTCCTTT 61.666 55.000 8.75 0.00 0.00 3.11
887 950 1.077212 AAGCTACTACCCCGAGCGA 60.077 57.895 0.00 0.00 41.23 4.93
959 1040 1.522355 ATCCTCGGCTTGCACATCG 60.522 57.895 0.00 0.00 0.00 3.84
1277 1379 2.181021 CTCCTCCACCACGTACGC 59.819 66.667 16.72 0.00 0.00 4.42
1317 1430 2.196382 TTCTCCCTTCTGCGTCGTCG 62.196 60.000 0.00 0.00 40.37 5.12
1352 1471 1.192146 TGGGCGGTGCTCTACTTTCT 61.192 55.000 0.00 0.00 0.00 2.52
1363 1482 3.744660 CTCTACTTTCTTGGGTGTGCTT 58.255 45.455 0.00 0.00 0.00 3.91
1380 1499 0.109132 CTTGAGGTGAAATTGGGCGC 60.109 55.000 0.00 0.00 0.00 6.53
1424 1546 2.159435 AGATTGGTTGTTTTATCCGCGC 60.159 45.455 0.00 0.00 0.00 6.86
1427 1549 0.247537 GGTTGTTTTATCCGCGCTCG 60.248 55.000 5.56 0.00 0.00 5.03
1457 1579 2.487762 TCGTTGGCAGAACATGGATTTC 59.512 45.455 0.00 0.00 0.00 2.17
1474 1596 2.202295 TTCGTTTTGCTGGTTCTTGC 57.798 45.000 0.00 0.00 0.00 4.01
1475 1597 1.098869 TCGTTTTGCTGGTTCTTGCA 58.901 45.000 0.00 0.00 37.42 4.08
1476 1598 1.474478 TCGTTTTGCTGGTTCTTGCAA 59.526 42.857 0.00 0.00 45.83 4.08
1484 1606 2.542411 GCTGGTTCTTGCAAGTGAAGTG 60.542 50.000 25.19 13.32 0.00 3.16
1494 1616 1.070309 CAAGTGAAGTGAAGCTCGCAC 60.070 52.381 10.74 10.74 34.57 5.34
1505 1627 2.789917 CTCGCACCATGAAGCTGC 59.210 61.111 0.00 0.00 0.00 5.25
1529 1651 3.827008 TTCTGTTGCTCTGAACTCTGT 57.173 42.857 0.00 0.00 0.00 3.41
1545 1667 3.895656 ACTCTGTAGCAAGTGTTACTGGA 59.104 43.478 10.69 6.78 33.69 3.86
1548 1670 3.990092 TGTAGCAAGTGTTACTGGACAG 58.010 45.455 6.83 0.00 33.63 3.51
1549 1671 3.639561 TGTAGCAAGTGTTACTGGACAGA 59.360 43.478 6.29 0.00 33.63 3.41
1550 1672 3.393089 AGCAAGTGTTACTGGACAGAG 57.607 47.619 6.29 0.00 0.00 3.35
1551 1673 2.037772 AGCAAGTGTTACTGGACAGAGG 59.962 50.000 6.29 0.00 0.00 3.69
1552 1674 2.037251 GCAAGTGTTACTGGACAGAGGA 59.963 50.000 6.29 0.00 0.00 3.71
1553 1675 3.307059 GCAAGTGTTACTGGACAGAGGAT 60.307 47.826 6.29 0.00 0.00 3.24
1554 1676 4.081642 GCAAGTGTTACTGGACAGAGGATA 60.082 45.833 6.29 0.00 0.00 2.59
1555 1677 5.395768 GCAAGTGTTACTGGACAGAGGATAT 60.396 44.000 6.29 0.00 0.00 1.63
1556 1678 6.276847 CAAGTGTTACTGGACAGAGGATATC 58.723 44.000 6.29 0.00 0.00 1.63
1557 1679 5.772004 AGTGTTACTGGACAGAGGATATCT 58.228 41.667 6.29 0.00 39.56 1.98
1558 1680 5.830991 AGTGTTACTGGACAGAGGATATCTC 59.169 44.000 6.29 0.00 42.75 2.75
1570 1692 5.722021 GAGGATATCTCTGGACTTTCCTC 57.278 47.826 2.05 0.00 39.38 3.71
1571 1693 4.488770 AGGATATCTCTGGACTTTCCTCC 58.511 47.826 2.05 0.00 37.46 4.30
1572 1694 3.257127 GGATATCTCTGGACTTTCCTCCG 59.743 52.174 2.05 0.00 37.46 4.63
1573 1695 2.239681 ATCTCTGGACTTTCCTCCGT 57.760 50.000 0.00 0.00 37.46 4.69
1574 1696 1.546961 TCTCTGGACTTTCCTCCGTC 58.453 55.000 0.00 0.00 37.46 4.79
1575 1697 1.075698 TCTCTGGACTTTCCTCCGTCT 59.924 52.381 0.00 0.00 37.46 4.18
1576 1698 1.203523 CTCTGGACTTTCCTCCGTCTG 59.796 57.143 0.00 0.00 37.46 3.51
1577 1699 0.390472 CTGGACTTTCCTCCGTCTGC 60.390 60.000 0.00 0.00 37.46 4.26
1578 1700 0.832135 TGGACTTTCCTCCGTCTGCT 60.832 55.000 0.00 0.00 37.46 4.24
1579 1701 0.390472 GGACTTTCCTCCGTCTGCTG 60.390 60.000 0.00 0.00 32.53 4.41
1580 1702 0.318762 GACTTTCCTCCGTCTGCTGT 59.681 55.000 0.00 0.00 0.00 4.40
1640 1795 5.776716 TGAATTCAGATGCCTTTTCCTCTTT 59.223 36.000 3.38 0.00 0.00 2.52
1698 1853 1.550327 TGGCGACACTTCAGATCTCT 58.450 50.000 0.00 0.00 33.40 3.10
1699 1854 1.474478 TGGCGACACTTCAGATCTCTC 59.526 52.381 0.00 0.00 33.40 3.20
1700 1855 1.748493 GGCGACACTTCAGATCTCTCT 59.252 52.381 0.00 0.00 0.00 3.10
1701 1856 2.223479 GGCGACACTTCAGATCTCTCTC 60.223 54.545 0.00 0.00 0.00 3.20
1702 1857 2.682856 GCGACACTTCAGATCTCTCTCT 59.317 50.000 0.00 0.00 0.00 3.10
1703 1858 3.242739 GCGACACTTCAGATCTCTCTCTC 60.243 52.174 0.00 0.00 0.00 3.20
1704 1859 4.191544 CGACACTTCAGATCTCTCTCTCT 58.808 47.826 0.00 0.00 0.00 3.10
1759 1916 2.089980 CTCTCCAGTGGCTTGAAATGG 58.910 52.381 3.51 0.00 0.00 3.16
1778 1935 1.601903 GGTCTGAACGTGCACAATTCA 59.398 47.619 24.47 24.47 0.00 2.57
1788 1945 4.228317 CGTGCACAATTCAACATGATTCA 58.772 39.130 18.64 0.00 0.00 2.57
1789 1946 4.322539 CGTGCACAATTCAACATGATTCAG 59.677 41.667 18.64 0.00 0.00 3.02
1817 1974 4.515191 TCAATGCACTCCACTGTTTAGTTC 59.485 41.667 0.00 0.00 34.07 3.01
1826 1983 2.549754 CACTGTTTAGTTCACCCTGCAG 59.450 50.000 6.78 6.78 34.07 4.41
1850 2007 2.427453 CGTCCATACAGTAGCTTCCACT 59.573 50.000 0.00 0.00 0.00 4.00
1851 2008 3.119101 CGTCCATACAGTAGCTTCCACTT 60.119 47.826 0.00 0.00 0.00 3.16
1852 2009 4.097437 CGTCCATACAGTAGCTTCCACTTA 59.903 45.833 0.00 0.00 0.00 2.24
1853 2010 5.221263 CGTCCATACAGTAGCTTCCACTTAT 60.221 44.000 0.00 0.00 0.00 1.73
1854 2011 6.583562 GTCCATACAGTAGCTTCCACTTATT 58.416 40.000 0.00 0.00 0.00 1.40
1855 2012 6.702282 GTCCATACAGTAGCTTCCACTTATTC 59.298 42.308 0.00 0.00 0.00 1.75
1856 2013 5.692204 CCATACAGTAGCTTCCACTTATTCG 59.308 44.000 0.00 0.00 0.00 3.34
1857 2014 3.522553 ACAGTAGCTTCCACTTATTCGC 58.477 45.455 0.00 0.00 0.00 4.70
1858 2015 3.056107 ACAGTAGCTTCCACTTATTCGCA 60.056 43.478 0.00 0.00 0.00 5.10
1859 2016 3.932710 CAGTAGCTTCCACTTATTCGCAA 59.067 43.478 0.00 0.00 0.00 4.85
1860 2017 4.391830 CAGTAGCTTCCACTTATTCGCAAA 59.608 41.667 0.00 0.00 0.00 3.68
1861 2018 5.001232 AGTAGCTTCCACTTATTCGCAAAA 58.999 37.500 0.00 0.00 0.00 2.44
1862 2019 5.648092 AGTAGCTTCCACTTATTCGCAAAAT 59.352 36.000 0.00 0.00 0.00 1.82
1863 2020 6.821665 AGTAGCTTCCACTTATTCGCAAAATA 59.178 34.615 0.00 0.00 0.00 1.40
1864 2021 6.509418 AGCTTCCACTTATTCGCAAAATAA 57.491 33.333 2.36 2.36 0.00 1.40
1865 2022 6.919721 AGCTTCCACTTATTCGCAAAATAAA 58.080 32.000 3.64 0.00 0.00 1.40
1866 2023 7.375053 AGCTTCCACTTATTCGCAAAATAAAA 58.625 30.769 3.64 0.00 0.00 1.52
1867 2024 7.870445 AGCTTCCACTTATTCGCAAAATAAAAA 59.130 29.630 3.64 0.00 0.00 1.94
2132 2340 7.942990 ACTACTAATGCTAGACCATGTAGTTC 58.057 38.462 0.00 0.00 34.17 3.01
2137 2345 4.600062 TGCTAGACCATGTAGTTCTCTCA 58.400 43.478 0.00 0.00 0.00 3.27
2192 2400 4.078537 TGCAACTTGCCATGTTGTAGTAT 58.921 39.130 20.47 0.00 44.23 2.12
2269 2478 4.916983 TTGGTTTGATTTGTGGAGTCAG 57.083 40.909 0.00 0.00 0.00 3.51
2306 2518 9.647918 ATTTATCTCACTGAGATACTGTAGGAA 57.352 33.333 23.17 15.24 47.00 3.36
2307 2519 8.684386 TTATCTCACTGAGATACTGTAGGAAG 57.316 38.462 23.17 0.00 47.00 3.46
2308 2520 5.441500 TCTCACTGAGATACTGTAGGAAGG 58.558 45.833 4.50 0.00 33.35 3.46
2309 2521 4.537751 TCACTGAGATACTGTAGGAAGGG 58.462 47.826 0.00 0.00 0.00 3.95
2405 2619 2.361757 CAAAGTTGTCCATCAGCACCAA 59.638 45.455 0.00 0.00 0.00 3.67
2447 2661 2.691996 TGGCTCCATGCTGGCCTA 60.692 61.111 18.04 0.00 45.45 3.93
2516 2730 2.297033 TCTTGAGCAGCAATTTGGGTTC 59.703 45.455 0.00 0.00 35.59 3.62
2536 2750 4.202245 TCGGTAAGCTTCTAACAATGCT 57.798 40.909 0.00 0.00 37.37 3.79
2537 2751 3.932710 TCGGTAAGCTTCTAACAATGCTG 59.067 43.478 0.00 0.00 35.79 4.41
2538 2752 3.684788 CGGTAAGCTTCTAACAATGCTGT 59.315 43.478 0.00 0.00 37.39 4.40
2539 2753 4.436050 CGGTAAGCTTCTAACAATGCTGTG 60.436 45.833 0.00 0.00 35.37 3.66
2575 2789 8.328758 GTGACTATCATCATTTGGGGGATATTA 58.671 37.037 0.00 0.00 0.00 0.98
2578 2792 9.072460 ACTATCATCATTTGGGGGATATTATGA 57.928 33.333 0.00 0.00 0.00 2.15
2612 2826 3.061563 CACGTCAACAAAACTCGTCTGAA 59.938 43.478 0.00 0.00 32.47 3.02
2629 2843 4.033817 GTCTGAATGTCTATCTGCTGCAAC 59.966 45.833 3.02 0.00 0.00 4.17
2631 2845 4.186926 TGAATGTCTATCTGCTGCAACTC 58.813 43.478 3.02 0.00 0.00 3.01
2831 3206 5.522460 GTGTGCACTGACACTAGTTCTTTTA 59.478 40.000 19.41 0.00 42.58 1.52
2877 3252 2.674796 ATCTACTGTCTGGTTTCGGC 57.325 50.000 0.00 0.00 0.00 5.54
2892 3267 3.573491 GGCGGCAGCGTAATGTCC 61.573 66.667 3.07 0.00 46.35 4.02
2907 3282 0.320073 TGTCCGCACTTTTCCTACGG 60.320 55.000 0.00 0.00 45.15 4.02
2991 3366 2.302733 TGAGCTGCTTATGAACTGGACA 59.697 45.455 2.53 0.00 0.00 4.02
2997 3372 6.604795 AGCTGCTTATGAACTGGACAATTTAT 59.395 34.615 0.00 0.00 0.00 1.40
3009 3384 6.095432 TGGACAATTTATTCCAACAAGGTG 57.905 37.500 0.00 0.00 39.04 4.00
3010 3385 5.835819 TGGACAATTTATTCCAACAAGGTGA 59.164 36.000 0.00 0.00 39.04 4.02
3013 3388 7.255801 GGACAATTTATTCCAACAAGGTGAGAA 60.256 37.037 0.00 0.00 39.02 2.87
3015 3390 8.143835 ACAATTTATTCCAACAAGGTGAGAAAG 58.856 33.333 0.00 0.00 39.02 2.62
3019 3394 4.771114 TCCAACAAGGTGAGAAAGAGAA 57.229 40.909 0.00 0.00 39.02 2.87
3022 3397 5.104527 TCCAACAAGGTGAGAAAGAGAAAGA 60.105 40.000 0.00 0.00 39.02 2.52
3028 3403 4.811557 AGGTGAGAAAGAGAAAGAAACACG 59.188 41.667 0.00 0.00 0.00 4.49
3040 3415 6.970484 AGAAAGAAACACGCATACATTTTCT 58.030 32.000 0.00 0.00 37.98 2.52
3142 3523 0.371989 TAATTGCGATCAACGTGGCG 59.628 50.000 0.00 0.00 44.60 5.69
3196 3577 4.024556 GCTCATATTGGTGGATTCTTGACG 60.025 45.833 0.00 0.00 0.00 4.35
3226 3607 2.032681 GGGTTCGTTCTGCTGGCT 59.967 61.111 0.00 0.00 0.00 4.75
3262 3643 1.736645 GTTGGAACGCAGCGAGCTA 60.737 57.895 24.65 7.76 42.61 3.32
3358 3739 4.345859 TGTCGGGTAAGTCTGACAAATT 57.654 40.909 10.88 0.00 46.42 1.82
3359 3740 4.312443 TGTCGGGTAAGTCTGACAAATTC 58.688 43.478 10.88 0.00 46.42 2.17
3360 3741 4.202274 TGTCGGGTAAGTCTGACAAATTCA 60.202 41.667 10.88 0.00 46.42 2.57
3361 3742 4.151867 GTCGGGTAAGTCTGACAAATTCAC 59.848 45.833 10.88 0.00 41.40 3.18
3386 3800 4.991056 CAGACAGTTGGGTATATTCGATGG 59.009 45.833 0.00 0.00 0.00 3.51
3439 3901 9.784531 ATCAAGACCGAGTTATATGATTCAAAT 57.215 29.630 0.00 0.00 0.00 2.32
3483 3945 8.408043 TGAAATGAATCTGATACCAACAACTT 57.592 30.769 0.00 0.00 0.00 2.66
3523 3985 2.844946 TCGTTGGTGATGCTCTTCAAA 58.155 42.857 0.00 0.00 0.00 2.69
3715 4180 7.856894 TGGTGTTAATTAAGTTTGTTCGTTAGC 59.143 33.333 0.00 0.00 0.00 3.09
3741 4206 5.606348 TTCTGTAAATTTGTTTGCCAGGT 57.394 34.783 0.00 0.00 0.00 4.00
3757 4222 4.202524 TGCCAGGTCCTGTAAGTTTGTAAT 60.203 41.667 17.85 0.00 0.00 1.89
3766 4231 5.390567 CCTGTAAGTTTGTAATTCGAGCACC 60.391 44.000 0.00 0.00 0.00 5.01
3820 4285 1.485066 AGGCCGTATCGTTTTGATCCT 59.515 47.619 0.00 0.00 38.57 3.24
3894 4359 6.373779 ACGCGCTATGTAACGTATAATAAGT 58.626 36.000 5.73 0.00 36.91 2.24
3897 4362 8.299981 CGCGCTATGTAACGTATAATAAGTAAC 58.700 37.037 5.56 0.00 0.00 2.50
3998 4463 2.888534 CCCACGGACGGCGTTATG 60.889 66.667 16.19 12.88 0.00 1.90
3999 4464 3.560278 CCACGGACGGCGTTATGC 61.560 66.667 16.19 0.00 45.38 3.14
4131 5701 6.128172 CGAACAAACCTAAGCTCTCATGAAAT 60.128 38.462 0.00 0.00 0.00 2.17
4143 5713 7.563020 AGCTCTCATGAAATAGACTGAATCAA 58.437 34.615 0.00 0.00 0.00 2.57
4144 5714 8.212312 AGCTCTCATGAAATAGACTGAATCAAT 58.788 33.333 0.00 0.00 0.00 2.57
4169 5739 3.250040 GCCAACAACGACATAAGACTGTT 59.750 43.478 0.00 0.00 0.00 3.16
4177 5747 5.748592 ACGACATAAGACTGTTTTGCTTTC 58.251 37.500 0.00 0.00 0.00 2.62
4180 5750 6.568462 CGACATAAGACTGTTTTGCTTTCCAT 60.568 38.462 0.00 0.00 0.00 3.41
4203 5787 3.694072 CAGGATTTTGAACAATCGGCCTA 59.306 43.478 0.00 0.00 34.42 3.93
4206 5790 4.201920 GGATTTTGAACAATCGGCCTAGAC 60.202 45.833 0.00 0.00 34.42 2.59
4318 6354 4.142816 GCACGTTCTGTATGAGAGCAAATT 60.143 41.667 0.00 0.00 31.45 1.82
4326 6362 7.487484 TCTGTATGAGAGCAAATTAGACTGAG 58.513 38.462 0.00 0.00 0.00 3.35
4327 6363 7.123397 TCTGTATGAGAGCAAATTAGACTGAGT 59.877 37.037 0.00 0.00 0.00 3.41
4328 6364 8.293699 TGTATGAGAGCAAATTAGACTGAGTA 57.706 34.615 0.00 0.00 0.00 2.59
4329 6365 8.191446 TGTATGAGAGCAAATTAGACTGAGTAC 58.809 37.037 0.00 0.00 0.00 2.73
4330 6366 6.842437 TGAGAGCAAATTAGACTGAGTACT 57.158 37.500 0.00 0.00 0.00 2.73
4331 6367 6.857956 TGAGAGCAAATTAGACTGAGTACTC 58.142 40.000 16.32 16.32 0.00 2.59
4332 6368 6.434340 TGAGAGCAAATTAGACTGAGTACTCA 59.566 38.462 23.80 23.80 38.06 3.41
4333 6369 7.039714 TGAGAGCAAATTAGACTGAGTACTCAA 60.040 37.037 25.14 11.53 39.39 3.02
4334 6370 7.846066 AGAGCAAATTAGACTGAGTACTCAAT 58.154 34.615 25.14 17.09 39.39 2.57
4335 6371 8.317679 AGAGCAAATTAGACTGAGTACTCAATT 58.682 33.333 25.14 17.99 39.39 2.32
4336 6372 9.587772 GAGCAAATTAGACTGAGTACTCAATTA 57.412 33.333 25.14 14.75 39.39 1.40
4337 6373 9.593134 AGCAAATTAGACTGAGTACTCAATTAG 57.407 33.333 25.14 16.13 39.39 1.73
4338 6374 9.587772 GCAAATTAGACTGAGTACTCAATTAGA 57.412 33.333 25.14 12.51 39.39 2.10
4455 6493 6.152831 ACAAAAACAGAGGATAAACATAGGCC 59.847 38.462 0.00 0.00 0.00 5.19
4491 6529 7.275560 GCAAAGCAACCAAACTATACATAAAGG 59.724 37.037 0.00 0.00 0.00 3.11
4492 6530 6.451064 AGCAACCAAACTATACATAAAGGC 57.549 37.500 0.00 0.00 0.00 4.35
4493 6531 5.359860 AGCAACCAAACTATACATAAAGGCC 59.640 40.000 0.00 0.00 0.00 5.19
4494 6532 5.451381 GCAACCAAACTATACATAAAGGCCC 60.451 44.000 0.00 0.00 0.00 5.80
4495 6533 5.727243 ACCAAACTATACATAAAGGCCCT 57.273 39.130 0.00 0.00 0.00 5.19
4496 6534 5.445964 ACCAAACTATACATAAAGGCCCTG 58.554 41.667 0.00 0.00 0.00 4.45
4497 6535 5.044402 ACCAAACTATACATAAAGGCCCTGT 60.044 40.000 0.00 0.54 0.00 4.00
4498 6536 5.891551 CCAAACTATACATAAAGGCCCTGTT 59.108 40.000 0.00 0.00 0.00 3.16
4499 6537 6.379988 CCAAACTATACATAAAGGCCCTGTTT 59.620 38.462 0.00 0.00 0.00 2.83
4500 6538 7.257722 CAAACTATACATAAAGGCCCTGTTTG 58.742 38.462 0.00 3.95 36.07 2.93
4501 6539 5.445964 ACTATACATAAAGGCCCTGTTTGG 58.554 41.667 0.00 0.00 0.00 3.28
4502 6540 2.694616 ACATAAAGGCCCTGTTTGGT 57.305 45.000 0.00 0.00 0.00 3.67
4503 6541 2.970987 ACATAAAGGCCCTGTTTGGTT 58.029 42.857 0.00 0.00 0.00 3.67
4504 6542 2.897326 ACATAAAGGCCCTGTTTGGTTC 59.103 45.455 0.00 0.00 0.00 3.62
4505 6543 1.611519 TAAAGGCCCTGTTTGGTTCG 58.388 50.000 0.00 0.00 0.00 3.95
4506 6544 1.112916 AAAGGCCCTGTTTGGTTCGG 61.113 55.000 0.00 0.00 0.00 4.30
4507 6545 3.680786 GGCCCTGTTTGGTTCGGC 61.681 66.667 0.00 0.00 38.96 5.54
4508 6546 2.597510 GCCCTGTTTGGTTCGGCT 60.598 61.111 0.00 0.00 36.65 5.52
4509 6547 2.919494 GCCCTGTTTGGTTCGGCTG 61.919 63.158 0.00 0.00 36.65 4.85
4510 6548 1.528309 CCCTGTTTGGTTCGGCTGT 60.528 57.895 0.00 0.00 0.00 4.40
4511 6549 1.654220 CCTGTTTGGTTCGGCTGTG 59.346 57.895 0.00 0.00 0.00 3.66
4512 6550 1.654220 CTGTTTGGTTCGGCTGTGG 59.346 57.895 0.00 0.00 0.00 4.17
4513 6551 0.817634 CTGTTTGGTTCGGCTGTGGA 60.818 55.000 0.00 0.00 0.00 4.02
4514 6552 0.179004 TGTTTGGTTCGGCTGTGGAT 60.179 50.000 0.00 0.00 0.00 3.41
4515 6553 0.958822 GTTTGGTTCGGCTGTGGATT 59.041 50.000 0.00 0.00 0.00 3.01
4516 6554 1.339929 GTTTGGTTCGGCTGTGGATTT 59.660 47.619 0.00 0.00 0.00 2.17
4517 6555 1.243902 TTGGTTCGGCTGTGGATTTC 58.756 50.000 0.00 0.00 0.00 2.17
4518 6556 0.400213 TGGTTCGGCTGTGGATTTCT 59.600 50.000 0.00 0.00 0.00 2.52
4519 6557 1.626321 TGGTTCGGCTGTGGATTTCTA 59.374 47.619 0.00 0.00 0.00 2.10
4520 6558 2.039216 TGGTTCGGCTGTGGATTTCTAA 59.961 45.455 0.00 0.00 0.00 2.10
4521 6559 3.078837 GGTTCGGCTGTGGATTTCTAAA 58.921 45.455 0.00 0.00 0.00 1.85
4522 6560 3.504520 GGTTCGGCTGTGGATTTCTAAAA 59.495 43.478 0.00 0.00 0.00 1.52
4523 6561 4.379499 GGTTCGGCTGTGGATTTCTAAAAG 60.379 45.833 0.00 0.00 0.00 2.27
4524 6562 4.015872 TCGGCTGTGGATTTCTAAAAGT 57.984 40.909 0.00 0.00 0.00 2.66
4525 6563 5.155278 TCGGCTGTGGATTTCTAAAAGTA 57.845 39.130 0.00 0.00 0.00 2.24
4526 6564 5.175859 TCGGCTGTGGATTTCTAAAAGTAG 58.824 41.667 0.00 0.00 0.00 2.57
4527 6565 4.201822 CGGCTGTGGATTTCTAAAAGTAGC 60.202 45.833 0.00 0.00 0.00 3.58
4528 6566 4.944317 GGCTGTGGATTTCTAAAAGTAGCT 59.056 41.667 0.00 0.00 0.00 3.32
4529 6567 5.163713 GGCTGTGGATTTCTAAAAGTAGCTG 60.164 44.000 0.00 0.00 0.00 4.24
4530 6568 5.412904 GCTGTGGATTTCTAAAAGTAGCTGT 59.587 40.000 0.00 0.00 0.00 4.40
4531 6569 6.621596 GCTGTGGATTTCTAAAAGTAGCTGTG 60.622 42.308 0.00 0.00 0.00 3.66
4532 6570 6.530120 TGTGGATTTCTAAAAGTAGCTGTGA 58.470 36.000 0.00 0.00 0.00 3.58
4533 6571 6.995686 TGTGGATTTCTAAAAGTAGCTGTGAA 59.004 34.615 0.00 0.00 0.00 3.18
4534 6572 7.500892 TGTGGATTTCTAAAAGTAGCTGTGAAA 59.499 33.333 0.00 0.00 0.00 2.69
4535 6573 8.349983 GTGGATTTCTAAAAGTAGCTGTGAAAA 58.650 33.333 0.00 0.00 0.00 2.29
4536 6574 8.908903 TGGATTTCTAAAAGTAGCTGTGAAAAA 58.091 29.630 0.00 0.00 0.00 1.94
4537 6575 9.914131 GGATTTCTAAAAGTAGCTGTGAAAAAT 57.086 29.630 0.00 0.00 0.00 1.82
4540 6578 9.950680 TTTCTAAAAGTAGCTGTGAAAAATCTG 57.049 29.630 0.00 0.00 0.00 2.90
4541 6579 8.677148 TCTAAAAGTAGCTGTGAAAAATCTGT 57.323 30.769 0.00 0.00 0.00 3.41
4542 6580 9.120538 TCTAAAAGTAGCTGTGAAAAATCTGTT 57.879 29.630 0.00 0.00 0.00 3.16
4543 6581 7.992180 AAAAGTAGCTGTGAAAAATCTGTTG 57.008 32.000 0.00 0.00 0.00 3.33
4544 6582 6.699575 AAGTAGCTGTGAAAAATCTGTTGT 57.300 33.333 0.00 0.00 0.00 3.32
4545 6583 6.064846 AGTAGCTGTGAAAAATCTGTTGTG 57.935 37.500 0.00 0.00 0.00 3.33
4546 6584 4.311816 AGCTGTGAAAAATCTGTTGTGG 57.688 40.909 0.00 0.00 0.00 4.17
4547 6585 3.953612 AGCTGTGAAAAATCTGTTGTGGA 59.046 39.130 0.00 0.00 0.00 4.02
4548 6586 4.402155 AGCTGTGAAAAATCTGTTGTGGAA 59.598 37.500 0.00 0.00 0.00 3.53
4549 6587 5.105392 AGCTGTGAAAAATCTGTTGTGGAAA 60.105 36.000 0.00 0.00 0.00 3.13
4550 6588 5.580297 GCTGTGAAAAATCTGTTGTGGAAAA 59.420 36.000 0.00 0.00 0.00 2.29
4551 6589 6.091986 GCTGTGAAAAATCTGTTGTGGAAAAA 59.908 34.615 0.00 0.00 0.00 1.94
4552 6590 7.357951 TGTGAAAAATCTGTTGTGGAAAAAC 57.642 32.000 0.00 0.00 33.57 2.43
4553 6591 6.931281 TGTGAAAAATCTGTTGTGGAAAAACA 59.069 30.769 0.00 0.00 43.01 2.83
4560 6598 4.582701 TGTTGTGGAAAAACAGCTATGG 57.417 40.909 0.00 0.00 39.64 2.74
4561 6599 4.211125 TGTTGTGGAAAAACAGCTATGGA 58.789 39.130 0.00 0.00 39.64 3.41
4562 6600 4.646945 TGTTGTGGAAAAACAGCTATGGAA 59.353 37.500 0.00 0.00 39.64 3.53
4563 6601 5.127845 TGTTGTGGAAAAACAGCTATGGAAA 59.872 36.000 0.00 0.00 39.64 3.13
4564 6602 5.860941 TGTGGAAAAACAGCTATGGAAAA 57.139 34.783 0.00 0.00 0.00 2.29
4565 6603 6.418057 TGTGGAAAAACAGCTATGGAAAAT 57.582 33.333 0.00 0.00 0.00 1.82
4566 6604 6.454795 TGTGGAAAAACAGCTATGGAAAATC 58.545 36.000 0.00 0.00 0.00 2.17
4567 6605 6.267471 TGTGGAAAAACAGCTATGGAAAATCT 59.733 34.615 0.00 0.00 0.00 2.40
4568 6606 6.587608 GTGGAAAAACAGCTATGGAAAATCTG 59.412 38.462 0.00 0.00 0.00 2.90
4569 6607 6.493115 TGGAAAAACAGCTATGGAAAATCTGA 59.507 34.615 0.00 0.00 0.00 3.27
4570 6608 7.178983 TGGAAAAACAGCTATGGAAAATCTGAT 59.821 33.333 0.00 0.00 0.00 2.90
4571 6609 7.490402 GGAAAAACAGCTATGGAAAATCTGATG 59.510 37.037 0.00 0.00 0.00 3.07
4572 6610 7.472334 AAAACAGCTATGGAAAATCTGATGT 57.528 32.000 0.00 0.00 0.00 3.06
4573 6611 6.446781 AACAGCTATGGAAAATCTGATGTG 57.553 37.500 0.00 0.00 0.00 3.21
4574 6612 5.748402 ACAGCTATGGAAAATCTGATGTGA 58.252 37.500 0.00 0.00 0.00 3.58
4575 6613 6.182627 ACAGCTATGGAAAATCTGATGTGAA 58.817 36.000 0.00 0.00 0.00 3.18
4576 6614 6.660521 ACAGCTATGGAAAATCTGATGTGAAA 59.339 34.615 0.00 0.00 0.00 2.69
4577 6615 7.177216 ACAGCTATGGAAAATCTGATGTGAAAA 59.823 33.333 0.00 0.00 0.00 2.29
4578 6616 8.030692 CAGCTATGGAAAATCTGATGTGAAAAA 58.969 33.333 0.00 0.00 0.00 1.94
4579 6617 8.248945 AGCTATGGAAAATCTGATGTGAAAAAG 58.751 33.333 0.00 0.00 0.00 2.27
4580 6618 8.246180 GCTATGGAAAATCTGATGTGAAAAAGA 58.754 33.333 0.00 0.00 0.00 2.52
4581 6619 9.565213 CTATGGAAAATCTGATGTGAAAAAGAC 57.435 33.333 0.00 0.00 0.00 3.01
4582 6620 6.437928 TGGAAAATCTGATGTGAAAAAGACG 58.562 36.000 0.00 0.00 0.00 4.18
4583 6621 6.039270 TGGAAAATCTGATGTGAAAAAGACGT 59.961 34.615 0.00 0.00 0.00 4.34
4584 6622 7.227711 TGGAAAATCTGATGTGAAAAAGACGTA 59.772 33.333 0.00 0.00 0.00 3.57
4585 6623 7.746475 GGAAAATCTGATGTGAAAAAGACGTAG 59.254 37.037 0.00 0.00 0.00 3.51
4586 6624 6.727824 AATCTGATGTGAAAAAGACGTAGG 57.272 37.500 0.00 0.00 0.00 3.18
4587 6625 5.209818 TCTGATGTGAAAAAGACGTAGGT 57.790 39.130 0.00 0.00 0.00 3.08
4588 6626 5.227908 TCTGATGTGAAAAAGACGTAGGTC 58.772 41.667 7.49 7.49 43.76 3.85
4589 6627 4.951254 TGATGTGAAAAAGACGTAGGTCA 58.049 39.130 17.27 0.00 45.92 4.02
4590 6628 5.547465 TGATGTGAAAAAGACGTAGGTCAT 58.453 37.500 17.27 2.80 45.92 3.06
4591 6629 5.995282 TGATGTGAAAAAGACGTAGGTCATT 59.005 36.000 17.27 9.11 45.92 2.57
4592 6630 6.485313 TGATGTGAAAAAGACGTAGGTCATTT 59.515 34.615 17.27 14.36 43.66 2.32
4593 6631 6.055231 TGTGAAAAAGACGTAGGTCATTTG 57.945 37.500 16.71 0.00 41.68 2.32
4594 6632 5.587043 TGTGAAAAAGACGTAGGTCATTTGT 59.413 36.000 16.71 9.95 41.68 2.83
4595 6633 6.134061 GTGAAAAAGACGTAGGTCATTTGTC 58.866 40.000 16.71 16.27 41.68 3.18
4596 6634 5.818336 TGAAAAAGACGTAGGTCATTTGTCA 59.182 36.000 16.71 17.97 41.68 3.58
4597 6635 6.316640 TGAAAAAGACGTAGGTCATTTGTCAA 59.683 34.615 16.71 8.16 41.68 3.18
4598 6636 6.687081 AAAAGACGTAGGTCATTTGTCAAA 57.313 33.333 17.27 0.00 45.92 2.69
4599 6637 5.668558 AAGACGTAGGTCATTTGTCAAAC 57.331 39.130 17.27 0.00 45.92 2.93
4600 6638 4.062991 AGACGTAGGTCATTTGTCAAACC 58.937 43.478 17.27 0.00 45.92 3.27
4601 6639 3.810941 GACGTAGGTCATTTGTCAAACCA 59.189 43.478 10.63 0.00 42.91 3.67
4602 6640 3.813166 ACGTAGGTCATTTGTCAAACCAG 59.187 43.478 0.00 0.00 34.09 4.00
4603 6641 3.364964 CGTAGGTCATTTGTCAAACCAGC 60.365 47.826 0.00 0.11 34.09 4.85
4604 6642 2.949447 AGGTCATTTGTCAAACCAGCT 58.051 42.857 0.00 2.47 34.09 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 90 1.004918 CTTTCTTCCACCTCGCCGT 60.005 57.895 0.00 0.00 0.00 5.68
88 91 2.391389 GCTTTCTTCCACCTCGCCG 61.391 63.158 0.00 0.00 0.00 6.46
89 92 2.391389 CGCTTTCTTCCACCTCGCC 61.391 63.158 0.00 0.00 0.00 5.54
90 93 1.374252 TCGCTTTCTTCCACCTCGC 60.374 57.895 0.00 0.00 0.00 5.03
96 99 0.386858 CGACTCGTCGCTTTCTTCCA 60.387 55.000 6.52 0.00 46.50 3.53
123 126 4.186926 CACTCATCATCCAACTGTACCAG 58.813 47.826 0.00 0.00 37.52 4.00
129 132 2.422479 CCAAGCACTCATCATCCAACTG 59.578 50.000 0.00 0.00 0.00 3.16
130 133 2.619849 CCCAAGCACTCATCATCCAACT 60.620 50.000 0.00 0.00 0.00 3.16
131 134 1.747355 CCCAAGCACTCATCATCCAAC 59.253 52.381 0.00 0.00 0.00 3.77
132 135 1.355381 ACCCAAGCACTCATCATCCAA 59.645 47.619 0.00 0.00 0.00 3.53
133 136 0.994247 ACCCAAGCACTCATCATCCA 59.006 50.000 0.00 0.00 0.00 3.41
134 137 1.673168 GACCCAAGCACTCATCATCC 58.327 55.000 0.00 0.00 0.00 3.51
136 139 0.107508 CCGACCCAAGCACTCATCAT 60.108 55.000 0.00 0.00 0.00 2.45
139 142 1.918293 TCCCGACCCAAGCACTCAT 60.918 57.895 0.00 0.00 0.00 2.90
140 143 2.525629 TCCCGACCCAAGCACTCA 60.526 61.111 0.00 0.00 0.00 3.41
141 144 2.047179 GTCCCGACCCAAGCACTC 60.047 66.667 0.00 0.00 0.00 3.51
142 145 3.637273 GGTCCCGACCCAAGCACT 61.637 66.667 2.16 0.00 45.68 4.40
224 228 3.802948 ACGTACCATCTGTCTTGATCC 57.197 47.619 0.00 0.00 0.00 3.36
225 229 5.035443 GTGTACGTACCATCTGTCTTGATC 58.965 45.833 22.43 0.00 0.00 2.92
226 230 4.438336 CGTGTACGTACCATCTGTCTTGAT 60.438 45.833 22.43 0.00 34.11 2.57
227 231 3.120095 CGTGTACGTACCATCTGTCTTGA 60.120 47.826 22.43 0.00 34.11 3.02
229 233 2.415090 GCGTGTACGTACCATCTGTCTT 60.415 50.000 22.43 0.00 42.22 3.01
230 234 1.131883 GCGTGTACGTACCATCTGTCT 59.868 52.381 22.43 0.00 42.22 3.41
231 235 1.542544 GCGTGTACGTACCATCTGTC 58.457 55.000 22.43 2.00 42.22 3.51
232 236 0.179181 CGCGTGTACGTACCATCTGT 60.179 55.000 22.43 0.00 42.22 3.41
233 237 1.469126 GCGCGTGTACGTACCATCTG 61.469 60.000 22.43 9.93 42.22 2.90
234 238 1.226491 GCGCGTGTACGTACCATCT 60.226 57.895 22.43 0.00 42.22 2.90
260 264 1.739466 ACTCCTACGTTGCATGCATTG 59.261 47.619 23.37 18.90 0.00 2.82
277 281 4.458295 TGCAGTACTCCACTACTTGTACTC 59.542 45.833 0.00 0.00 42.23 2.59
282 286 4.521130 TCTTGCAGTACTCCACTACTTG 57.479 45.455 0.00 0.00 34.98 3.16
283 287 4.021016 CCTTCTTGCAGTACTCCACTACTT 60.021 45.833 0.00 0.00 34.98 2.24
288 292 3.330267 CTTCCTTCTTGCAGTACTCCAC 58.670 50.000 0.00 0.00 0.00 4.02
290 294 2.567615 TCCTTCCTTCTTGCAGTACTCC 59.432 50.000 0.00 0.00 0.00 3.85
291 295 3.855858 CTCCTTCCTTCTTGCAGTACTC 58.144 50.000 0.00 0.00 0.00 2.59
369 373 1.060937 CTCGTACATTGCCGCAAGC 59.939 57.895 12.16 1.43 44.14 4.01
413 418 1.001641 GTGCCACCAGCTTCTCCAT 60.002 57.895 0.00 0.00 44.23 3.41
415 420 2.167398 TACGTGCCACCAGCTTCTCC 62.167 60.000 0.00 0.00 44.23 3.71
432 437 4.047030 CGTGGAGTGCGTACGTAC 57.953 61.111 26.29 26.29 33.48 3.67
435 440 2.868331 CGACGTGGAGTGCGTACG 60.868 66.667 11.84 11.84 43.04 3.67
436 441 2.503375 CCGACGTGGAGTGCGTAC 60.503 66.667 0.00 0.00 43.04 3.67
437 442 4.409218 GCCGACGTGGAGTGCGTA 62.409 66.667 0.00 0.00 43.04 4.42
649 698 0.169672 TCGCGTGGTGAAGTAGTAGC 59.830 55.000 5.77 0.00 0.00 3.58
650 699 2.248487 GTTCGCGTGGTGAAGTAGTAG 58.752 52.381 5.77 0.00 32.53 2.57
803 866 3.071206 GGAGGCGGACAGAGAGCA 61.071 66.667 0.00 0.00 0.00 4.26
845 908 4.393778 GAGGGGACGGGGACAGGA 62.394 72.222 0.00 0.00 0.00 3.86
1206 1308 2.202810 GAGAAGCGGCGGAGGAAG 60.203 66.667 9.78 0.00 0.00 3.46
1215 1317 2.124942 GGCTGGAAGGAGAAGCGG 60.125 66.667 0.00 0.00 37.83 5.52
1317 1430 1.595093 CCCAACCCCGAGCACAATTC 61.595 60.000 0.00 0.00 0.00 2.17
1342 1461 3.409026 AGCACACCCAAGAAAGTAGAG 57.591 47.619 0.00 0.00 0.00 2.43
1352 1471 0.257328 TTCACCTCAAGCACACCCAA 59.743 50.000 0.00 0.00 0.00 4.12
1363 1482 1.228398 TGCGCCCAATTTCACCTCA 60.228 52.632 4.18 0.00 0.00 3.86
1380 1499 4.951715 TGAAGATGAATCCCCAAATCTGTG 59.048 41.667 0.00 0.00 29.93 3.66
1424 1546 2.333926 TGCCAACGAATCAACTACGAG 58.666 47.619 0.00 0.00 0.00 4.18
1427 1549 3.496884 TGTTCTGCCAACGAATCAACTAC 59.503 43.478 0.00 0.00 0.00 2.73
1457 1579 1.919918 TTGCAAGAACCAGCAAAACG 58.080 45.000 0.00 0.00 46.65 3.60
1474 1596 1.070309 GTGCGAGCTTCACTTCACTTG 60.070 52.381 11.43 0.00 32.55 3.16
1475 1597 1.221414 GTGCGAGCTTCACTTCACTT 58.779 50.000 11.43 0.00 32.55 3.16
1476 1598 0.601311 GGTGCGAGCTTCACTTCACT 60.601 55.000 16.33 0.00 34.48 3.41
1477 1599 0.880278 TGGTGCGAGCTTCACTTCAC 60.880 55.000 16.33 6.31 34.97 3.18
1478 1600 0.035317 ATGGTGCGAGCTTCACTTCA 59.965 50.000 16.33 9.53 34.97 3.02
1479 1601 0.445436 CATGGTGCGAGCTTCACTTC 59.555 55.000 16.33 5.21 34.97 3.01
1484 1606 1.023513 AGCTTCATGGTGCGAGCTTC 61.024 55.000 0.00 0.00 42.46 3.86
1494 1616 1.822990 ACAGAATTGGCAGCTTCATGG 59.177 47.619 12.56 5.96 0.00 3.66
1505 1627 4.070716 AGAGTTCAGAGCAACAGAATTGG 58.929 43.478 0.00 0.00 0.00 3.16
1529 1651 3.258372 CCTCTGTCCAGTAACACTTGCTA 59.742 47.826 0.00 0.00 0.00 3.49
1548 1670 4.526650 GGAGGAAAGTCCAGAGATATCCTC 59.473 50.000 9.82 9.82 42.02 3.71
1549 1671 4.488770 GGAGGAAAGTCCAGAGATATCCT 58.511 47.826 0.00 0.00 39.61 3.24
1550 1672 3.257127 CGGAGGAAAGTCCAGAGATATCC 59.743 52.174 0.00 0.00 39.61 2.59
1551 1673 3.892588 ACGGAGGAAAGTCCAGAGATATC 59.107 47.826 0.00 0.00 39.61 1.63
1552 1674 3.892588 GACGGAGGAAAGTCCAGAGATAT 59.107 47.826 0.00 0.00 39.61 1.63
1553 1675 3.053544 AGACGGAGGAAAGTCCAGAGATA 60.054 47.826 0.00 0.00 39.61 1.98
1554 1676 2.104170 GACGGAGGAAAGTCCAGAGAT 58.896 52.381 0.00 0.00 39.61 2.75
1555 1677 1.075698 AGACGGAGGAAAGTCCAGAGA 59.924 52.381 0.00 0.00 39.61 3.10
1556 1678 1.203523 CAGACGGAGGAAAGTCCAGAG 59.796 57.143 0.00 0.00 39.61 3.35
1557 1679 1.257743 CAGACGGAGGAAAGTCCAGA 58.742 55.000 0.00 0.00 39.61 3.86
1558 1680 0.390472 GCAGACGGAGGAAAGTCCAG 60.390 60.000 0.00 0.00 39.61 3.86
1559 1681 0.832135 AGCAGACGGAGGAAAGTCCA 60.832 55.000 0.00 0.00 39.61 4.02
1560 1682 0.390472 CAGCAGACGGAGGAAAGTCC 60.390 60.000 0.00 0.00 38.08 3.85
1561 1683 0.318762 ACAGCAGACGGAGGAAAGTC 59.681 55.000 0.00 0.00 37.63 3.01
1562 1684 0.034059 CACAGCAGACGGAGGAAAGT 59.966 55.000 0.00 0.00 0.00 2.66
1563 1685 0.318441 TCACAGCAGACGGAGGAAAG 59.682 55.000 0.00 0.00 0.00 2.62
1564 1686 0.318441 CTCACAGCAGACGGAGGAAA 59.682 55.000 0.00 0.00 0.00 3.13
1565 1687 1.967535 CTCACAGCAGACGGAGGAA 59.032 57.895 0.00 0.00 0.00 3.36
1566 1688 3.686760 CTCACAGCAGACGGAGGA 58.313 61.111 0.00 0.00 0.00 3.71
1567 1689 1.536073 TTCCTCACAGCAGACGGAGG 61.536 60.000 0.00 0.00 46.61 4.30
1568 1690 0.318441 TTTCCTCACAGCAGACGGAG 59.682 55.000 0.00 0.00 0.00 4.63
1569 1691 0.976641 ATTTCCTCACAGCAGACGGA 59.023 50.000 0.00 0.00 0.00 4.69
1570 1692 1.338105 TGATTTCCTCACAGCAGACGG 60.338 52.381 0.00 0.00 0.00 4.79
1571 1693 1.998315 CTGATTTCCTCACAGCAGACG 59.002 52.381 0.00 0.00 0.00 4.18
1572 1694 3.325293 TCTGATTTCCTCACAGCAGAC 57.675 47.619 0.00 0.00 0.00 3.51
1573 1695 4.356405 TTTCTGATTTCCTCACAGCAGA 57.644 40.909 0.00 0.00 0.00 4.26
1574 1696 4.458295 ACATTTCTGATTTCCTCACAGCAG 59.542 41.667 0.00 0.00 0.00 4.24
1575 1697 4.401022 ACATTTCTGATTTCCTCACAGCA 58.599 39.130 0.00 0.00 0.00 4.41
1576 1698 5.182760 AGAACATTTCTGATTTCCTCACAGC 59.817 40.000 0.00 0.00 38.91 4.40
1577 1699 6.654161 AGAGAACATTTCTGATTTCCTCACAG 59.346 38.462 0.00 0.00 40.87 3.66
1578 1700 6.429078 CAGAGAACATTTCTGATTTCCTCACA 59.571 38.462 0.00 0.00 43.75 3.58
1579 1701 6.652481 TCAGAGAACATTTCTGATTTCCTCAC 59.348 38.462 1.07 0.00 44.47 3.51
1580 1702 6.772605 TCAGAGAACATTTCTGATTTCCTCA 58.227 36.000 1.07 0.00 44.47 3.86
1640 1795 0.685097 CCTGTCTCCCGAACTTCCAA 59.315 55.000 0.00 0.00 0.00 3.53
1687 1842 6.041865 AGAGAGAGAGAGAGAGAGATCTGAAG 59.958 46.154 0.00 0.00 0.00 3.02
1697 1852 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1698 1853 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1699 1854 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1700 1855 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1701 1856 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1702 1857 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1703 1858 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1704 1859 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1759 1916 3.035942 GTTGAATTGTGCACGTTCAGAC 58.964 45.455 26.26 22.94 33.82 3.51
1778 1935 5.693104 GTGCATTGAACAACTGAATCATGTT 59.307 36.000 2.23 2.23 39.82 2.71
1788 1945 2.620115 CAGTGGAGTGCATTGAACAACT 59.380 45.455 0.48 0.00 0.00 3.16
1789 1946 2.358898 ACAGTGGAGTGCATTGAACAAC 59.641 45.455 14.06 0.00 0.00 3.32
1817 1974 0.249120 TATGGACGAACTGCAGGGTG 59.751 55.000 19.93 9.21 0.00 4.61
1826 1983 3.119245 TGGAAGCTACTGTATGGACGAAC 60.119 47.826 0.00 0.00 0.00 3.95
1873 2030 3.439129 GCGGTGGAAGCTACTGTATTTTT 59.561 43.478 0.00 0.00 0.00 1.94
1874 2031 3.007635 GCGGTGGAAGCTACTGTATTTT 58.992 45.455 0.00 0.00 0.00 1.82
1875 2032 2.236395 AGCGGTGGAAGCTACTGTATTT 59.764 45.455 0.00 0.00 44.05 1.40
1876 2033 1.831736 AGCGGTGGAAGCTACTGTATT 59.168 47.619 0.00 0.00 44.05 1.89
1877 2034 1.486211 AGCGGTGGAAGCTACTGTAT 58.514 50.000 0.00 0.00 44.05 2.29
1878 2035 2.133281 TAGCGGTGGAAGCTACTGTA 57.867 50.000 0.00 0.00 44.05 2.74
1879 2036 2.971676 TAGCGGTGGAAGCTACTGT 58.028 52.632 0.00 0.00 44.05 3.55
1883 2040 0.970640 TTGTGTAGCGGTGGAAGCTA 59.029 50.000 0.00 0.00 44.05 3.32
1885 2042 1.866925 GTTGTGTAGCGGTGGAAGC 59.133 57.895 0.00 0.00 0.00 3.86
1886 2043 1.897398 GCGTTGTGTAGCGGTGGAAG 61.897 60.000 0.00 0.00 0.00 3.46
1887 2044 1.957186 GCGTTGTGTAGCGGTGGAA 60.957 57.895 0.00 0.00 0.00 3.53
1888 2045 2.356553 GCGTTGTGTAGCGGTGGA 60.357 61.111 0.00 0.00 0.00 4.02
1889 2046 2.663520 TGCGTTGTGTAGCGGTGG 60.664 61.111 0.00 0.00 35.87 4.61
1890 2047 1.663388 TCTGCGTTGTGTAGCGGTG 60.663 57.895 0.00 0.00 40.42 4.94
1891 2048 1.663702 GTCTGCGTTGTGTAGCGGT 60.664 57.895 0.00 0.00 40.42 5.68
1892 2049 1.617755 CTGTCTGCGTTGTGTAGCGG 61.618 60.000 0.00 0.00 40.87 5.52
2132 2340 3.599730 TGCCACTACTGTCAATGAGAG 57.400 47.619 5.81 5.81 0.00 3.20
2137 2345 1.683011 GGGCATGCCACTACTGTCAAT 60.683 52.381 36.56 0.00 37.98 2.57
2192 2400 4.587684 TGAGCTGCAATCTCATGAGATAGA 59.412 41.667 33.10 20.25 46.75 1.98
2292 2501 7.002879 TGTATGTACCCTTCCTACAGTATCTC 58.997 42.308 0.00 0.00 0.00 2.75
2306 2518 7.691993 AACCTTATCATCTTGTATGTACCCT 57.308 36.000 0.00 0.00 0.00 4.34
2307 2519 9.269453 GTTAACCTTATCATCTTGTATGTACCC 57.731 37.037 0.00 0.00 0.00 3.69
2308 2520 8.975439 CGTTAACCTTATCATCTTGTATGTACC 58.025 37.037 0.00 0.00 0.00 3.34
2309 2521 8.975439 CCGTTAACCTTATCATCTTGTATGTAC 58.025 37.037 0.00 0.00 0.00 2.90
2405 2619 0.978146 AGCTAATGAGACGCCACCCT 60.978 55.000 0.00 0.00 0.00 4.34
2447 2661 4.040706 AGCATGTTCACAACCAAATGGATT 59.959 37.500 6.42 0.00 38.94 3.01
2516 2730 3.684788 ACAGCATTGTTAGAAGCTTACCG 59.315 43.478 0.00 0.00 34.61 4.02
2536 2750 5.467035 TGATAGTCACACTGATTCACACA 57.533 39.130 0.00 0.00 0.00 3.72
2537 2751 6.101997 TGATGATAGTCACACTGATTCACAC 58.898 40.000 0.00 0.00 0.00 3.82
2538 2752 6.284891 TGATGATAGTCACACTGATTCACA 57.715 37.500 0.00 0.00 0.00 3.58
2539 2753 7.783090 AATGATGATAGTCACACTGATTCAC 57.217 36.000 0.00 0.00 0.00 3.18
2575 2789 6.920817 TGTTGACGTGTAGAAAGACTATCAT 58.079 36.000 0.00 0.00 33.39 2.45
2578 2792 7.709613 AGTTTTGTTGACGTGTAGAAAGACTAT 59.290 33.333 0.00 0.00 33.39 2.12
2612 2826 3.900966 TGAGTTGCAGCAGATAGACAT 57.099 42.857 2.55 0.00 0.00 3.06
2629 2843 6.591935 TCCAGGGTAACTAAAATGCTATGAG 58.408 40.000 0.00 0.00 0.00 2.90
2631 2845 6.828785 AGTTCCAGGGTAACTAAAATGCTATG 59.171 38.462 0.00 0.00 35.44 2.23
2782 3157 8.236586 ACGTTATTTAGCCATGTGCAATATATG 58.763 33.333 8.58 0.00 44.83 1.78
2797 3172 3.185594 TGTCAGTGCACACGTTATTTAGC 59.814 43.478 21.04 0.00 36.20 3.09
2859 3234 0.242825 CGCCGAAACCAGACAGTAGA 59.757 55.000 0.00 0.00 0.00 2.59
2886 3261 2.073816 CGTAGGAAAAGTGCGGACATT 58.926 47.619 10.52 0.00 0.00 2.71
2907 3282 5.874810 TGCACCAACAGAGATGTAGTTATTC 59.125 40.000 0.00 0.00 0.00 1.75
2976 3351 7.771183 TGGAATAAATTGTCCAGTTCATAAGC 58.229 34.615 2.41 0.00 39.04 3.09
2991 3366 8.477419 TCTTTCTCACCTTGTTGGAATAAATT 57.523 30.769 0.00 0.00 39.71 1.82
2997 3372 4.771114 TCTCTTTCTCACCTTGTTGGAA 57.229 40.909 0.00 0.00 39.71 3.53
3009 3384 4.795970 TGCGTGTTTCTTTCTCTTTCTC 57.204 40.909 0.00 0.00 0.00 2.87
3010 3385 5.758296 TGTATGCGTGTTTCTTTCTCTTTCT 59.242 36.000 0.00 0.00 0.00 2.52
3013 3388 6.560253 AATGTATGCGTGTTTCTTTCTCTT 57.440 33.333 0.00 0.00 0.00 2.85
3015 3390 7.078228 AGAAAATGTATGCGTGTTTCTTTCTC 58.922 34.615 0.00 0.00 35.53 2.87
3019 3394 6.970484 AGAAGAAAATGTATGCGTGTTTCTT 58.030 32.000 17.28 17.28 46.12 2.52
3022 3397 7.120579 TGGATAGAAGAAAATGTATGCGTGTTT 59.879 33.333 0.00 0.00 0.00 2.83
3028 3403 6.666417 CAGCTGGATAGAAGAAAATGTATGC 58.334 40.000 5.57 0.00 0.00 3.14
3040 3415 1.908619 TGTTCAGGCAGCTGGATAGAA 59.091 47.619 17.12 0.00 0.00 2.10
3127 3508 2.125713 ATCGCCACGTTGATCGCA 60.126 55.556 0.00 0.00 44.19 5.10
3196 3577 1.183030 CGAACCCCAAAAGGAACCCC 61.183 60.000 0.00 0.00 38.24 4.95
3226 3607 0.402504 ACCAACCGAATTGTGGCCTA 59.597 50.000 3.32 0.00 36.47 3.93
3262 3643 2.089925 AGGAGGCTGATTAGTATGGGGT 60.090 50.000 0.00 0.00 0.00 4.95
3358 3739 5.623596 CGAATATACCCAACTGTCTGTGTGA 60.624 44.000 0.00 0.00 0.00 3.58
3359 3740 4.566759 CGAATATACCCAACTGTCTGTGTG 59.433 45.833 0.00 0.00 0.00 3.82
3360 3741 4.464951 TCGAATATACCCAACTGTCTGTGT 59.535 41.667 0.00 0.00 0.00 3.72
3361 3742 5.006153 TCGAATATACCCAACTGTCTGTG 57.994 43.478 0.00 0.00 0.00 3.66
3386 3800 5.758296 TGTTCAGTGTAAGTTCAGAACCATC 59.242 40.000 9.85 1.52 35.68 3.51
3439 3901 6.647334 TTTCATGTCTTCCATTAGCACAAA 57.353 33.333 0.00 0.00 0.00 2.83
3441 3903 5.945191 TCATTTCATGTCTTCCATTAGCACA 59.055 36.000 0.00 0.00 0.00 4.57
3449 3911 7.500227 GGTATCAGATTCATTTCATGTCTTCCA 59.500 37.037 0.00 0.00 0.00 3.53
3478 3940 3.787476 GCGTGAACCTGTAACACAAGTTG 60.787 47.826 0.00 0.00 33.29 3.16
3483 3945 2.319136 AAGCGTGAACCTGTAACACA 57.681 45.000 0.00 0.00 34.69 3.72
3523 3985 0.673644 CGTCATTCCCGTTCTTGCCT 60.674 55.000 0.00 0.00 0.00 4.75
3636 4098 0.601558 TGGTCCTCTCAACACTACGC 59.398 55.000 0.00 0.00 0.00 4.42
3647 4109 3.771216 ACAAGCATGAAAATGGTCCTCT 58.229 40.909 0.00 0.00 0.00 3.69
3715 4180 6.128849 CCTGGCAAACAAATTTACAGAATTCG 60.129 38.462 0.00 0.00 35.52 3.34
3741 4206 5.407387 GTGCTCGAATTACAAACTTACAGGA 59.593 40.000 0.00 0.00 0.00 3.86
3757 4222 0.539669 TCACTGGAGAGGTGCTCGAA 60.540 55.000 0.00 0.00 44.91 3.71
3766 4231 2.350804 CACGCATGAAATCACTGGAGAG 59.649 50.000 0.00 0.00 0.00 3.20
3820 4285 1.064946 CGGACCAACGCAAAAGCAA 59.935 52.632 0.00 0.00 0.00 3.91
3873 4338 8.299981 GCGTTACTTATTATACGTTACATAGCG 58.700 37.037 0.00 0.00 36.45 4.26
3878 4343 8.797215 CAACAGCGTTACTTATTATACGTTACA 58.203 33.333 0.00 0.00 36.45 2.41
3894 4359 5.106475 GGATGTTACCATTTCAACAGCGTTA 60.106 40.000 0.00 0.00 40.93 3.18
3897 4362 3.190327 TGGATGTTACCATTTCAACAGCG 59.810 43.478 0.00 0.00 40.93 5.18
4015 4487 3.305398 TTGCTCAACAAAAACGTGGTT 57.695 38.095 0.00 0.00 34.56 3.67
4093 5598 4.701171 AGGTTTGTTCGTGTTTAGTCCAAA 59.299 37.500 0.00 0.00 0.00 3.28
4143 5713 3.684788 GTCTTATGTCGTTGTTGGCTGAT 59.315 43.478 0.00 0.00 0.00 2.90
4144 5714 3.064207 GTCTTATGTCGTTGTTGGCTGA 58.936 45.455 0.00 0.00 0.00 4.26
4147 5717 2.806244 ACAGTCTTATGTCGTTGTTGGC 59.194 45.455 0.00 0.00 0.00 4.52
4149 5719 5.171337 GCAAAACAGTCTTATGTCGTTGTTG 59.829 40.000 0.00 0.00 33.68 3.33
4150 5720 5.065988 AGCAAAACAGTCTTATGTCGTTGTT 59.934 36.000 0.00 0.00 33.68 2.83
4151 5721 4.574828 AGCAAAACAGTCTTATGTCGTTGT 59.425 37.500 0.00 0.00 33.68 3.32
4152 5722 5.095691 AGCAAAACAGTCTTATGTCGTTG 57.904 39.130 0.00 0.00 34.01 4.10
4153 5723 5.751243 AAGCAAAACAGTCTTATGTCGTT 57.249 34.783 0.00 0.00 31.50 3.85
4169 5739 5.804944 TCAAAATCCTGATGGAAAGCAAA 57.195 34.783 0.00 0.00 46.80 3.68
4177 5747 4.675510 CCGATTGTTCAAAATCCTGATGG 58.324 43.478 0.00 0.00 33.74 3.51
4180 5750 2.491693 GGCCGATTGTTCAAAATCCTGA 59.508 45.455 0.00 0.00 33.74 3.86
4203 5787 2.297315 TCACAACGCAGATCTTCTGTCT 59.703 45.455 6.40 0.00 45.94 3.41
4206 5790 2.922387 CTCTCACAACGCAGATCTTCTG 59.078 50.000 0.00 0.08 46.90 3.02
4318 6354 9.516546 TTCAAGTCTAATTGAGTACTCAGTCTA 57.483 33.333 23.97 11.28 40.16 2.59
4326 6362 8.547967 TGGTTGATTCAAGTCTAATTGAGTAC 57.452 34.615 0.00 0.00 40.16 2.73
4327 6363 9.219603 CTTGGTTGATTCAAGTCTAATTGAGTA 57.780 33.333 0.00 0.00 40.16 2.59
4328 6364 7.308830 GCTTGGTTGATTCAAGTCTAATTGAGT 60.309 37.037 0.00 0.00 42.44 3.41
4329 6365 7.025963 GCTTGGTTGATTCAAGTCTAATTGAG 58.974 38.462 0.00 0.00 42.44 3.02
4330 6366 6.489700 TGCTTGGTTGATTCAAGTCTAATTGA 59.510 34.615 0.00 0.00 42.44 2.57
4331 6367 6.583806 GTGCTTGGTTGATTCAAGTCTAATTG 59.416 38.462 0.00 0.00 42.44 2.32
4332 6368 6.568462 CGTGCTTGGTTGATTCAAGTCTAATT 60.568 38.462 0.00 0.00 42.44 1.40
4333 6369 5.106555 CGTGCTTGGTTGATTCAAGTCTAAT 60.107 40.000 0.00 0.00 42.44 1.73
4334 6370 4.213270 CGTGCTTGGTTGATTCAAGTCTAA 59.787 41.667 0.00 0.00 42.44 2.10
4335 6371 3.745975 CGTGCTTGGTTGATTCAAGTCTA 59.254 43.478 0.00 0.00 42.44 2.59
4336 6372 2.549754 CGTGCTTGGTTGATTCAAGTCT 59.450 45.455 0.00 0.00 42.44 3.24
4337 6373 2.918131 GCGTGCTTGGTTGATTCAAGTC 60.918 50.000 0.00 0.00 42.44 3.01
4338 6374 1.001378 GCGTGCTTGGTTGATTCAAGT 60.001 47.619 0.00 0.00 42.44 3.16
4339 6375 1.666888 GGCGTGCTTGGTTGATTCAAG 60.667 52.381 0.00 0.00 43.10 3.02
4340 6376 0.313672 GGCGTGCTTGGTTGATTCAA 59.686 50.000 0.00 0.00 0.00 2.69
4455 6493 2.035704 TGGTTGCTTTGCCTGTATTGTG 59.964 45.455 0.00 0.00 0.00 3.33
4491 6529 2.597510 AGCCGAACCAAACAGGGC 60.598 61.111 0.00 0.00 43.89 5.19
4492 6530 1.528309 ACAGCCGAACCAAACAGGG 60.528 57.895 0.00 0.00 43.89 4.45
4493 6531 1.654220 CACAGCCGAACCAAACAGG 59.346 57.895 0.00 0.00 45.67 4.00
4494 6532 0.817634 TCCACAGCCGAACCAAACAG 60.818 55.000 0.00 0.00 0.00 3.16
4495 6533 0.179004 ATCCACAGCCGAACCAAACA 60.179 50.000 0.00 0.00 0.00 2.83
4496 6534 0.958822 AATCCACAGCCGAACCAAAC 59.041 50.000 0.00 0.00 0.00 2.93
4497 6535 1.611491 GAAATCCACAGCCGAACCAAA 59.389 47.619 0.00 0.00 0.00 3.28
4498 6536 1.202879 AGAAATCCACAGCCGAACCAA 60.203 47.619 0.00 0.00 0.00 3.67
4499 6537 0.400213 AGAAATCCACAGCCGAACCA 59.600 50.000 0.00 0.00 0.00 3.67
4500 6538 2.396590 TAGAAATCCACAGCCGAACC 57.603 50.000 0.00 0.00 0.00 3.62
4501 6539 4.215613 ACTTTTAGAAATCCACAGCCGAAC 59.784 41.667 0.00 0.00 0.00 3.95
4502 6540 4.394729 ACTTTTAGAAATCCACAGCCGAA 58.605 39.130 0.00 0.00 0.00 4.30
4503 6541 4.015872 ACTTTTAGAAATCCACAGCCGA 57.984 40.909 0.00 0.00 0.00 5.54
4504 6542 4.201822 GCTACTTTTAGAAATCCACAGCCG 60.202 45.833 0.00 0.00 0.00 5.52
4505 6543 4.944317 AGCTACTTTTAGAAATCCACAGCC 59.056 41.667 0.00 0.00 0.00 4.85
4506 6544 5.412904 ACAGCTACTTTTAGAAATCCACAGC 59.587 40.000 0.00 0.00 0.00 4.40
4507 6545 6.650807 TCACAGCTACTTTTAGAAATCCACAG 59.349 38.462 0.00 0.00 0.00 3.66
4508 6546 6.530120 TCACAGCTACTTTTAGAAATCCACA 58.470 36.000 0.00 0.00 0.00 4.17
4509 6547 7.435068 TTCACAGCTACTTTTAGAAATCCAC 57.565 36.000 0.00 0.00 0.00 4.02
4510 6548 8.458573 TTTTCACAGCTACTTTTAGAAATCCA 57.541 30.769 0.00 0.00 0.00 3.41
4511 6549 9.914131 ATTTTTCACAGCTACTTTTAGAAATCC 57.086 29.630 0.00 0.00 0.00 3.01
4514 6552 9.950680 CAGATTTTTCACAGCTACTTTTAGAAA 57.049 29.630 0.00 0.00 0.00 2.52
4515 6553 9.120538 ACAGATTTTTCACAGCTACTTTTAGAA 57.879 29.630 0.00 0.00 0.00 2.10
4516 6554 8.677148 ACAGATTTTTCACAGCTACTTTTAGA 57.323 30.769 0.00 0.00 0.00 2.10
4517 6555 9.173939 CAACAGATTTTTCACAGCTACTTTTAG 57.826 33.333 0.00 0.00 0.00 1.85
4518 6556 8.682710 ACAACAGATTTTTCACAGCTACTTTTA 58.317 29.630 0.00 0.00 0.00 1.52
4519 6557 7.489113 CACAACAGATTTTTCACAGCTACTTTT 59.511 33.333 0.00 0.00 0.00 2.27
4520 6558 6.974622 CACAACAGATTTTTCACAGCTACTTT 59.025 34.615 0.00 0.00 0.00 2.66
4521 6559 6.460123 CCACAACAGATTTTTCACAGCTACTT 60.460 38.462 0.00 0.00 0.00 2.24
4522 6560 5.009010 CCACAACAGATTTTTCACAGCTACT 59.991 40.000 0.00 0.00 0.00 2.57
4523 6561 5.008613 TCCACAACAGATTTTTCACAGCTAC 59.991 40.000 0.00 0.00 0.00 3.58
4524 6562 5.129634 TCCACAACAGATTTTTCACAGCTA 58.870 37.500 0.00 0.00 0.00 3.32
4525 6563 3.953612 TCCACAACAGATTTTTCACAGCT 59.046 39.130 0.00 0.00 0.00 4.24
4526 6564 4.305989 TCCACAACAGATTTTTCACAGC 57.694 40.909 0.00 0.00 0.00 4.40
4527 6565 7.117523 TGTTTTTCCACAACAGATTTTTCACAG 59.882 33.333 0.00 0.00 30.49 3.66
4528 6566 6.931281 TGTTTTTCCACAACAGATTTTTCACA 59.069 30.769 0.00 0.00 30.49 3.58
4529 6567 7.357951 TGTTTTTCCACAACAGATTTTTCAC 57.642 32.000 0.00 0.00 30.49 3.18
4530 6568 8.008187 AGCTGTTTTTCCACAACAGATTTTTCA 61.008 33.333 15.36 0.00 46.22 2.69
4531 6569 6.313658 AGCTGTTTTTCCACAACAGATTTTTC 59.686 34.615 15.36 0.00 46.22 2.29
4532 6570 6.172630 AGCTGTTTTTCCACAACAGATTTTT 58.827 32.000 15.36 0.00 46.22 1.94
4533 6571 5.733676 AGCTGTTTTTCCACAACAGATTTT 58.266 33.333 15.36 0.00 46.22 1.82
4534 6572 5.343307 AGCTGTTTTTCCACAACAGATTT 57.657 34.783 15.36 0.00 46.22 2.17
4535 6573 6.449698 CATAGCTGTTTTTCCACAACAGATT 58.550 36.000 15.36 6.32 46.22 2.40
4539 6577 4.211125 TCCATAGCTGTTTTTCCACAACA 58.789 39.130 0.00 0.00 33.09 3.33
4540 6578 4.846779 TCCATAGCTGTTTTTCCACAAC 57.153 40.909 0.00 0.00 0.00 3.32
4541 6579 5.860941 TTTCCATAGCTGTTTTTCCACAA 57.139 34.783 0.00 0.00 0.00 3.33
4542 6580 5.860941 TTTTCCATAGCTGTTTTTCCACA 57.139 34.783 0.00 0.00 0.00 4.17
4543 6581 6.587608 CAGATTTTCCATAGCTGTTTTTCCAC 59.412 38.462 0.00 0.00 0.00 4.02
4544 6582 6.493115 TCAGATTTTCCATAGCTGTTTTTCCA 59.507 34.615 0.00 0.00 0.00 3.53
4545 6583 6.924111 TCAGATTTTCCATAGCTGTTTTTCC 58.076 36.000 0.00 0.00 0.00 3.13
4546 6584 8.031277 ACATCAGATTTTCCATAGCTGTTTTTC 58.969 33.333 0.00 0.00 0.00 2.29
4547 6585 7.816031 CACATCAGATTTTCCATAGCTGTTTTT 59.184 33.333 0.00 0.00 0.00 1.94
4548 6586 7.177216 TCACATCAGATTTTCCATAGCTGTTTT 59.823 33.333 0.00 0.00 0.00 2.43
4549 6587 6.660521 TCACATCAGATTTTCCATAGCTGTTT 59.339 34.615 0.00 0.00 0.00 2.83
4550 6588 6.182627 TCACATCAGATTTTCCATAGCTGTT 58.817 36.000 0.00 0.00 0.00 3.16
4551 6589 5.748402 TCACATCAGATTTTCCATAGCTGT 58.252 37.500 0.00 0.00 0.00 4.40
4552 6590 6.688637 TTCACATCAGATTTTCCATAGCTG 57.311 37.500 0.00 0.00 0.00 4.24
4553 6591 7.707624 TTTTCACATCAGATTTTCCATAGCT 57.292 32.000 0.00 0.00 0.00 3.32
4554 6592 8.246180 TCTTTTTCACATCAGATTTTCCATAGC 58.754 33.333 0.00 0.00 0.00 2.97
4555 6593 9.565213 GTCTTTTTCACATCAGATTTTCCATAG 57.435 33.333 0.00 0.00 0.00 2.23
4556 6594 8.236586 CGTCTTTTTCACATCAGATTTTCCATA 58.763 33.333 0.00 0.00 0.00 2.74
4557 6595 7.086376 CGTCTTTTTCACATCAGATTTTCCAT 58.914 34.615 0.00 0.00 0.00 3.41
4558 6596 6.039270 ACGTCTTTTTCACATCAGATTTTCCA 59.961 34.615 0.00 0.00 0.00 3.53
4559 6597 6.438763 ACGTCTTTTTCACATCAGATTTTCC 58.561 36.000 0.00 0.00 0.00 3.13
4560 6598 7.746475 CCTACGTCTTTTTCACATCAGATTTTC 59.254 37.037 0.00 0.00 0.00 2.29
4561 6599 7.228706 ACCTACGTCTTTTTCACATCAGATTTT 59.771 33.333 0.00 0.00 0.00 1.82
4562 6600 6.710744 ACCTACGTCTTTTTCACATCAGATTT 59.289 34.615 0.00 0.00 0.00 2.17
4563 6601 6.231211 ACCTACGTCTTTTTCACATCAGATT 58.769 36.000 0.00 0.00 0.00 2.40
4564 6602 5.794894 ACCTACGTCTTTTTCACATCAGAT 58.205 37.500 0.00 0.00 0.00 2.90
4565 6603 5.209818 ACCTACGTCTTTTTCACATCAGA 57.790 39.130 0.00 0.00 0.00 3.27
4566 6604 4.988540 TGACCTACGTCTTTTTCACATCAG 59.011 41.667 0.00 0.00 39.94 2.90
4567 6605 4.951254 TGACCTACGTCTTTTTCACATCA 58.049 39.130 0.00 0.00 39.94 3.07
4568 6606 6.481954 AATGACCTACGTCTTTTTCACATC 57.518 37.500 0.00 0.00 39.94 3.06
4569 6607 6.262273 ACAAATGACCTACGTCTTTTTCACAT 59.738 34.615 0.00 0.00 41.78 3.21
4570 6608 5.587043 ACAAATGACCTACGTCTTTTTCACA 59.413 36.000 0.00 0.00 41.78 3.58
4571 6609 6.056428 ACAAATGACCTACGTCTTTTTCAC 57.944 37.500 0.00 0.00 41.78 3.18
4572 6610 5.818336 TGACAAATGACCTACGTCTTTTTCA 59.182 36.000 0.00 7.74 41.78 2.69
4573 6611 6.295039 TGACAAATGACCTACGTCTTTTTC 57.705 37.500 0.00 6.08 41.78 2.29
4574 6612 6.687081 TTGACAAATGACCTACGTCTTTTT 57.313 33.333 0.00 0.00 41.78 1.94
4575 6613 6.459161 GGTTTGACAAATGACCTACGTCTTTT 60.459 38.462 3.49 0.00 43.46 2.27
4576 6614 5.008316 GGTTTGACAAATGACCTACGTCTTT 59.992 40.000 3.49 0.00 39.94 2.52
4577 6615 4.514066 GGTTTGACAAATGACCTACGTCTT 59.486 41.667 3.49 0.00 39.94 3.01
4578 6616 4.062991 GGTTTGACAAATGACCTACGTCT 58.937 43.478 3.49 0.00 39.94 4.18
4579 6617 3.810941 TGGTTTGACAAATGACCTACGTC 59.189 43.478 3.49 0.00 39.66 4.34
4580 6618 3.811083 TGGTTTGACAAATGACCTACGT 58.189 40.909 3.49 0.00 33.33 3.57
4581 6619 3.364964 GCTGGTTTGACAAATGACCTACG 60.365 47.826 3.49 0.00 33.33 3.51
4582 6620 3.821033 AGCTGGTTTGACAAATGACCTAC 59.179 43.478 3.49 0.00 33.33 3.18
4583 6621 4.098914 AGCTGGTTTGACAAATGACCTA 57.901 40.909 3.49 0.00 33.33 3.08
4584 6622 2.949447 AGCTGGTTTGACAAATGACCT 58.051 42.857 3.49 0.00 33.33 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.