Multiple sequence alignment - TraesCS5D01G318500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G318500 chr5D 100.000 2964 0 0 1 2964 411226961 411223998 0.000000e+00 5474
1 TraesCS5D01G318500 chr5D 84.543 744 90 15 1116 1851 410867021 410866295 0.000000e+00 713
2 TraesCS5D01G318500 chr5D 86.455 347 41 4 1200 1545 410444211 410444552 2.790000e-100 375
3 TraesCS5D01G318500 chr5D 86.000 350 43 5 1202 1545 411149305 411148956 1.300000e-98 370
4 TraesCS5D01G318500 chr5D 85.143 350 46 3 1202 1545 410952929 410952580 1.310000e-93 353
5 TraesCS5D01G318500 chr5D 93.617 141 7 2 2066 2205 380078921 380078782 2.990000e-50 209
6 TraesCS5D01G318500 chr5D 84.892 139 18 2 412 548 460745453 460745590 1.430000e-28 137
7 TraesCS5D01G318500 chr5B 89.530 2063 108 37 4 2012 493696624 493694616 0.000000e+00 2514
8 TraesCS5D01G318500 chr5B 87.023 786 41 22 2206 2964 493694543 493693792 0.000000e+00 830
9 TraesCS5D01G318500 chr5B 83.808 772 100 17 1116 1879 493174582 493173828 0.000000e+00 710
10 TraesCS5D01G318500 chr5B 86.885 122 12 3 412 531 684601121 684601240 1.850000e-27 134
11 TraesCS5D01G318500 chr5A 94.617 1356 45 9 611 1945 523149308 523147960 0.000000e+00 2074
12 TraesCS5D01G318500 chr5A 89.100 789 46 19 2206 2964 523146588 523145810 0.000000e+00 944
13 TraesCS5D01G318500 chr5A 84.636 742 93 12 1116 1851 522861743 522861017 0.000000e+00 719
14 TraesCS5D01G318500 chr5A 85.303 347 45 3 1205 1545 522883359 522883013 1.310000e-93 353
15 TraesCS5D01G318500 chr3D 96.454 141 4 1 2066 2205 488863432 488863572 6.390000e-57 231
16 TraesCS5D01G318500 chr3D 94.326 141 7 1 2066 2205 529127308 529127168 6.430000e-52 215
17 TraesCS5D01G318500 chr3D 82.803 157 23 4 389 542 88357896 88358051 1.430000e-28 137
18 TraesCS5D01G318500 chr1D 95.745 141 5 1 2066 2205 367162679 367162539 2.970000e-55 226
19 TraesCS5D01G318500 chr1D 93.617 141 8 1 2066 2205 463344450 463344310 2.990000e-50 209
20 TraesCS5D01G318500 chr4D 94.366 142 6 2 2066 2205 447293664 447293805 1.790000e-52 217
21 TraesCS5D01G318500 chr2D 94.964 139 6 1 2066 2203 560114377 560114515 1.790000e-52 217
22 TraesCS5D01G318500 chr2D 82.000 150 26 1 393 541 544659189 544659338 3.100000e-25 126
23 TraesCS5D01G318500 chrUn 93.662 142 7 2 2066 2206 15884552 15884412 8.320000e-51 211
24 TraesCS5D01G318500 chr6D 94.245 139 7 1 2066 2203 42669191 42669329 8.320000e-51 211
25 TraesCS5D01G318500 chr6A 83.553 152 20 4 392 540 614102923 614103072 1.430000e-28 137
26 TraesCS5D01G318500 chr3B 84.783 138 19 2 403 539 22510154 22510018 1.430000e-28 137
27 TraesCS5D01G318500 chr6B 84.173 139 18 4 403 540 695004084 695004219 6.670000e-27 132
28 TraesCS5D01G318500 chr1B 84.058 138 19 3 404 540 467554668 467554533 2.400000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G318500 chr5D 411223998 411226961 2963 True 5474 5474 100.0000 1 2964 1 chr5D.!!$R5 2963
1 TraesCS5D01G318500 chr5D 410866295 410867021 726 True 713 713 84.5430 1116 1851 1 chr5D.!!$R2 735
2 TraesCS5D01G318500 chr5B 493693792 493696624 2832 True 1672 2514 88.2765 4 2964 2 chr5B.!!$R2 2960
3 TraesCS5D01G318500 chr5B 493173828 493174582 754 True 710 710 83.8080 1116 1879 1 chr5B.!!$R1 763
4 TraesCS5D01G318500 chr5A 523145810 523149308 3498 True 1509 2074 91.8585 611 2964 2 chr5A.!!$R3 2353
5 TraesCS5D01G318500 chr5A 522861017 522861743 726 True 719 719 84.6360 1116 1851 1 chr5A.!!$R1 735

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
546 554 0.179045 GACGGAGGTAGTACCCGCTA 60.179 60.0 16.05 0.0 46.54 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2142 3488 0.101399 CATCCGAGTTCGAGTCCCTG 59.899 60.0 2.59 0.0 43.02 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.505680 TGATGTCGAACTGAAATTTGGGG 59.494 43.478 0.00 0.00 0.00 4.96
29 30 3.954904 TGTCGAACTGAAATTTGGGGAAA 59.045 39.130 0.00 0.00 0.00 3.13
30 31 4.037446 TGTCGAACTGAAATTTGGGGAAAG 59.963 41.667 0.00 0.00 0.00 2.62
32 33 4.890581 TCGAACTGAAATTTGGGGAAAGAA 59.109 37.500 0.00 0.00 0.00 2.52
34 35 6.041523 TCGAACTGAAATTTGGGGAAAGAATT 59.958 34.615 0.00 0.00 0.00 2.17
74 78 1.616159 TGCTTGTTTCCTAGGTTGGC 58.384 50.000 9.08 6.79 0.00 4.52
112 119 5.453339 CGGGGATGGATGCGAGTATTATAAT 60.453 44.000 2.97 2.97 0.00 1.28
149 156 6.575162 TTATGGAACTTCCTTTTTCTCTGC 57.425 37.500 9.31 0.00 37.46 4.26
150 157 3.222603 TGGAACTTCCTTTTTCTCTGCC 58.777 45.455 9.31 0.00 37.46 4.85
151 158 3.117512 TGGAACTTCCTTTTTCTCTGCCT 60.118 43.478 9.31 0.00 37.46 4.75
152 159 4.104102 TGGAACTTCCTTTTTCTCTGCCTA 59.896 41.667 9.31 0.00 37.46 3.93
153 160 5.222130 TGGAACTTCCTTTTTCTCTGCCTAT 60.222 40.000 9.31 0.00 37.46 2.57
154 161 6.012858 TGGAACTTCCTTTTTCTCTGCCTATA 60.013 38.462 9.31 0.00 37.46 1.31
155 162 6.884836 GGAACTTCCTTTTTCTCTGCCTATAA 59.115 38.462 0.00 0.00 32.53 0.98
156 163 7.066404 GGAACTTCCTTTTTCTCTGCCTATAAG 59.934 40.741 0.00 0.00 32.53 1.73
157 164 7.259088 ACTTCCTTTTTCTCTGCCTATAAGA 57.741 36.000 0.00 0.00 0.00 2.10
158 165 7.866870 ACTTCCTTTTTCTCTGCCTATAAGAT 58.133 34.615 0.00 0.00 0.00 2.40
159 166 8.332487 ACTTCCTTTTTCTCTGCCTATAAGATT 58.668 33.333 0.00 0.00 0.00 2.40
197 204 7.458409 AGTAATTATATTTGCTGATGGGCTG 57.542 36.000 0.00 0.00 0.00 4.85
214 221 2.668550 GGGCGGTCCAAGACACAC 60.669 66.667 0.00 0.00 33.68 3.82
228 235 1.604278 GACACACTTTTGTCCTCCAGC 59.396 52.381 0.00 0.00 40.15 4.85
234 241 2.641815 ACTTTTGTCCTCCAGCATCTCT 59.358 45.455 0.00 0.00 0.00 3.10
262 269 1.108776 GTACCTACACGCATCCTCCA 58.891 55.000 0.00 0.00 0.00 3.86
283 290 7.874528 CCTCCATGTTTTTCTTTGCTTTAGATT 59.125 33.333 0.00 0.00 0.00 2.40
284 291 9.264719 CTCCATGTTTTTCTTTGCTTTAGATTT 57.735 29.630 0.00 0.00 0.00 2.17
285 292 9.612066 TCCATGTTTTTCTTTGCTTTAGATTTT 57.388 25.926 0.00 0.00 0.00 1.82
318 325 1.312815 AAGGAGCTAATTGCATCCGC 58.687 50.000 0.00 0.00 45.94 5.54
338 345 4.886009 GCAATACGAAAAGCAAAAGTCC 57.114 40.909 0.00 0.00 0.00 3.85
339 346 3.673338 GCAATACGAAAAGCAAAAGTCCC 59.327 43.478 0.00 0.00 0.00 4.46
344 351 3.636764 ACGAAAAGCAAAAGTCCCTCATT 59.363 39.130 0.00 0.00 0.00 2.57
349 356 3.012518 AGCAAAAGTCCCTCATTGATCG 58.987 45.455 0.00 0.00 0.00 3.69
353 360 5.419542 CAAAAGTCCCTCATTGATCGAGTA 58.580 41.667 0.00 0.00 0.00 2.59
361 368 5.008019 CCCTCATTGATCGAGTATGGTTTTG 59.992 44.000 0.00 0.00 0.00 2.44
371 378 4.648651 GAGTATGGTTTTGGTGTGGTACT 58.351 43.478 0.00 0.00 0.00 2.73
379 386 0.599558 TGGTGTGGTACTCGCTACAC 59.400 55.000 4.49 4.49 41.90 2.90
384 391 2.086869 GTGGTACTCGCTACACTACCA 58.913 52.381 0.00 0.00 37.00 3.25
404 411 7.888546 ACTACCAGGAAAGCACATAAAAGTTAT 59.111 33.333 0.00 0.00 0.00 1.89
407 414 7.397192 ACCAGGAAAGCACATAAAAGTTATCAT 59.603 33.333 0.00 0.00 0.00 2.45
437 444 6.028368 ACTATGTTCAAGTACGAATCTGACG 58.972 40.000 0.00 0.00 0.00 4.35
440 447 6.185852 TGTTCAAGTACGAATCTGACGATA 57.814 37.500 0.00 0.00 34.70 2.92
441 448 6.792326 TGTTCAAGTACGAATCTGACGATAT 58.208 36.000 0.00 0.00 34.70 1.63
530 538 6.918569 ACGAAGGAGACTAATAAATCATGACG 59.081 38.462 0.00 0.00 42.68 4.35
532 540 6.978674 AGGAGACTAATAAATCATGACGGA 57.021 37.500 0.00 0.00 40.61 4.69
533 541 6.987386 AGGAGACTAATAAATCATGACGGAG 58.013 40.000 0.00 0.00 40.61 4.63
545 553 1.452833 GACGGAGGTAGTACCCGCT 60.453 63.158 16.05 0.00 46.54 5.52
546 554 0.179045 GACGGAGGTAGTACCCGCTA 60.179 60.000 16.05 0.00 46.54 4.26
554 562 2.643551 GTAGTACCCGCTACACTACCA 58.356 52.381 0.00 0.00 40.61 3.25
561 569 1.549170 CCGCTACACTACCAGGAAAGT 59.451 52.381 0.00 0.00 0.00 2.66
562 570 2.756760 CCGCTACACTACCAGGAAAGTA 59.243 50.000 0.00 0.00 0.00 2.24
570 578 9.715121 CTACACTACCAGGAAAGTACATAAAAA 57.285 33.333 0.00 0.00 0.00 1.94
658 666 7.840342 AAAGAACACACTAATCTGATGCTAG 57.160 36.000 0.00 0.00 0.00 3.42
677 685 0.596600 GGATGAGAACGCCGCGAATA 60.597 55.000 21.79 1.09 0.00 1.75
771 779 6.415573 CACAAAACGCGGTTAAAAAGATACTT 59.584 34.615 11.16 0.00 0.00 2.24
1003 1035 1.133482 AGGCAAGCCACTGGTTTACTT 60.133 47.619 14.40 0.00 38.92 2.24
1012 1044 4.020839 GCCACTGGTTTACTTAGTACTCCA 60.021 45.833 0.00 11.98 0.00 3.86
1089 1129 2.872370 AGCCTAGCAAAAGTACGTACG 58.128 47.619 19.49 15.01 0.00 3.67
1109 1152 4.819761 CGCCTAGCTTGCTCGGCA 62.820 66.667 28.97 1.44 42.59 5.69
1879 1941 3.716431 AGGGACTCCGGTCAAAACTATA 58.284 45.455 0.00 0.00 43.77 1.31
1886 1948 5.068198 ACTCCGGTCAAAACTATATTCGCTA 59.932 40.000 0.00 0.00 0.00 4.26
1887 1949 5.284079 TCCGGTCAAAACTATATTCGCTAC 58.716 41.667 0.00 0.00 0.00 3.58
1888 1950 5.068198 TCCGGTCAAAACTATATTCGCTACT 59.932 40.000 0.00 0.00 0.00 2.57
1889 1951 6.262944 TCCGGTCAAAACTATATTCGCTACTA 59.737 38.462 0.00 0.00 0.00 1.82
1890 1952 7.040201 TCCGGTCAAAACTATATTCGCTACTAT 60.040 37.037 0.00 0.00 0.00 2.12
1891 1953 7.597743 CCGGTCAAAACTATATTCGCTACTATT 59.402 37.037 0.00 0.00 0.00 1.73
1892 1954 9.616634 CGGTCAAAACTATATTCGCTACTATTA 57.383 33.333 0.00 0.00 0.00 0.98
1950 2021 1.737816 CCCGTACGTGGACCTATGG 59.262 63.158 15.21 0.51 0.00 2.74
1966 3283 6.817765 ACCTATGGTCGGCATAATAAAATG 57.182 37.500 0.00 0.00 0.00 2.32
1991 3308 2.620242 GACATTTGGGCGCATCAAAAT 58.380 42.857 24.59 18.08 37.60 1.82
1995 3312 2.278792 GGGCGCATCAAAATCGGC 60.279 61.111 10.83 0.00 46.07 5.54
2002 3319 1.468054 GCATCAAAATCGGCCTCACAC 60.468 52.381 0.00 0.00 0.00 3.82
2003 3320 1.086696 ATCAAAATCGGCCTCACACG 58.913 50.000 0.00 0.00 0.00 4.49
2014 3360 1.337823 GCCTCACACGACCACATACTT 60.338 52.381 0.00 0.00 0.00 2.24
2023 3369 3.190079 CGACCACATACTTCTGGACATG 58.810 50.000 0.00 0.00 0.00 3.21
2024 3370 2.939103 GACCACATACTTCTGGACATGC 59.061 50.000 0.00 0.00 0.00 4.06
2025 3371 2.292267 CCACATACTTCTGGACATGCC 58.708 52.381 0.00 0.00 37.10 4.40
2044 3390 0.459237 CAAGTCTGGCGAGCGAGAAT 60.459 55.000 11.21 7.76 32.82 2.40
2051 3397 1.201343 GGCGAGCGAGAATGAAGTAC 58.799 55.000 0.00 0.00 0.00 2.73
2052 3398 1.202313 GGCGAGCGAGAATGAAGTACT 60.202 52.381 0.00 0.00 0.00 2.73
2053 3399 2.033049 GGCGAGCGAGAATGAAGTACTA 59.967 50.000 0.00 0.00 0.00 1.82
2054 3400 3.037324 GCGAGCGAGAATGAAGTACTAC 58.963 50.000 0.00 0.00 0.00 2.73
2055 3401 3.281601 CGAGCGAGAATGAAGTACTACG 58.718 50.000 0.00 0.00 0.00 3.51
2059 3405 3.619729 CGAGAATGAAGTACTACGCCTC 58.380 50.000 0.00 0.00 0.00 4.70
2061 3407 4.201930 CGAGAATGAAGTACTACGCCTCTT 60.202 45.833 0.00 0.00 0.00 2.85
2062 3408 5.007430 CGAGAATGAAGTACTACGCCTCTTA 59.993 44.000 0.00 0.00 0.00 2.10
2063 3409 6.293516 CGAGAATGAAGTACTACGCCTCTTAT 60.294 42.308 0.00 0.00 0.00 1.73
2064 3410 7.349412 AGAATGAAGTACTACGCCTCTTATT 57.651 36.000 0.00 0.00 0.00 1.40
2065 3411 8.461249 AGAATGAAGTACTACGCCTCTTATTA 57.539 34.615 0.00 0.00 0.00 0.98
2066 3412 8.910944 AGAATGAAGTACTACGCCTCTTATTAA 58.089 33.333 0.00 0.00 0.00 1.40
2067 3413 9.525409 GAATGAAGTACTACGCCTCTTATTAAA 57.475 33.333 0.00 0.00 0.00 1.52
2068 3414 9.880157 AATGAAGTACTACGCCTCTTATTAAAA 57.120 29.630 0.00 0.00 0.00 1.52
2085 3431 5.731957 TTAAAATAAGACCAACCAAGGGC 57.268 39.130 0.00 0.00 36.73 5.19
2090 3436 2.957060 GACCAACCAAGGGCTAACC 58.043 57.895 0.00 0.00 40.67 2.85
2127 3473 6.963049 TTTTATAGAAGAAACTCCGTGAGC 57.037 37.500 1.36 0.00 32.04 4.26
2128 3474 5.654603 TTATAGAAGAAACTCCGTGAGCA 57.345 39.130 1.36 0.00 32.04 4.26
2129 3475 2.156343 AGAAGAAACTCCGTGAGCAC 57.844 50.000 1.36 0.00 32.04 4.40
2130 3476 1.149148 GAAGAAACTCCGTGAGCACC 58.851 55.000 1.36 0.00 32.04 5.01
2131 3477 0.600255 AAGAAACTCCGTGAGCACCG 60.600 55.000 1.36 0.00 32.04 4.94
2132 3478 2.665185 AAACTCCGTGAGCACCGC 60.665 61.111 1.36 0.00 32.04 5.68
2153 3499 2.599281 TCCGTGCAGGGACTCGAA 60.599 61.111 23.92 0.69 41.52 3.71
2154 3500 2.432628 CCGTGCAGGGACTCGAAC 60.433 66.667 20.97 0.00 34.60 3.95
2155 3501 2.651361 CGTGCAGGGACTCGAACT 59.349 61.111 0.00 0.00 34.60 3.01
2156 3502 1.444553 CGTGCAGGGACTCGAACTC 60.445 63.158 0.00 0.00 34.60 3.01
2157 3503 1.444553 GTGCAGGGACTCGAACTCG 60.445 63.158 0.00 0.00 34.60 4.18
2158 3504 2.182030 GCAGGGACTCGAACTCGG 59.818 66.667 0.00 0.00 34.60 4.63
2159 3505 2.341101 GCAGGGACTCGAACTCGGA 61.341 63.158 0.00 0.00 34.60 4.55
2160 3506 1.668101 GCAGGGACTCGAACTCGGAT 61.668 60.000 0.00 0.00 34.60 4.18
2161 3507 0.101399 CAGGGACTCGAACTCGGATG 59.899 60.000 0.00 0.00 34.60 3.51
2162 3508 1.038130 AGGGACTCGAACTCGGATGG 61.038 60.000 0.00 0.00 40.29 3.51
2163 3509 1.437986 GGACTCGAACTCGGATGGG 59.562 63.158 0.00 0.00 40.29 4.00
2164 3510 1.227002 GACTCGAACTCGGATGGGC 60.227 63.158 0.00 0.00 40.29 5.36
2165 3511 1.668101 GACTCGAACTCGGATGGGCT 61.668 60.000 0.00 0.00 40.29 5.19
2166 3512 1.227089 CTCGAACTCGGATGGGCTG 60.227 63.158 0.00 0.00 40.29 4.85
2167 3513 2.202932 CGAACTCGGATGGGCTGG 60.203 66.667 0.00 0.00 35.37 4.85
2168 3514 2.514824 GAACTCGGATGGGCTGGC 60.515 66.667 0.00 0.00 0.00 4.85
2169 3515 3.329542 GAACTCGGATGGGCTGGCA 62.330 63.158 2.88 0.00 0.00 4.92
2170 3516 2.819984 GAACTCGGATGGGCTGGCAA 62.820 60.000 2.88 0.00 0.00 4.52
2171 3517 2.825836 CTCGGATGGGCTGGCAAC 60.826 66.667 2.88 0.00 0.00 4.17
2183 3529 2.647297 GGCAACAACCTCAGCTGC 59.353 61.111 9.47 0.00 0.00 5.25
2184 3530 2.647297 GCAACAACCTCAGCTGCC 59.353 61.111 9.47 0.00 0.00 4.85
2185 3531 2.924105 GCAACAACCTCAGCTGCCC 61.924 63.158 9.47 0.00 0.00 5.36
2186 3532 1.529010 CAACAACCTCAGCTGCCCA 60.529 57.895 9.47 0.00 0.00 5.36
2187 3533 1.228367 AACAACCTCAGCTGCCCAG 60.228 57.895 9.47 0.70 0.00 4.45
2223 3569 5.531287 ACGCCCTAAATGAGCTTATAAAAGG 59.469 40.000 0.00 0.00 32.98 3.11
2246 3605 3.667960 CGATGAACAGGAAAAGCGAAAGG 60.668 47.826 0.00 0.00 0.00 3.11
2247 3606 1.336755 TGAACAGGAAAAGCGAAAGGC 59.663 47.619 0.00 0.00 44.05 4.35
2274 3633 2.741985 CGGCTGACACGAATGCCA 60.742 61.111 0.00 0.00 45.13 4.92
2277 3636 3.044059 GCTGACACGAATGCCAGCC 62.044 63.158 4.43 0.00 44.39 4.85
2329 3688 0.690762 ATAGGTGCCGTTGGTTCACT 59.309 50.000 0.00 0.00 0.00 3.41
2334 3693 2.539338 GCCGTTGGTTCACTTGCGA 61.539 57.895 0.00 0.00 0.00 5.10
2339 3698 2.478894 CGTTGGTTCACTTGCGATTACT 59.521 45.455 0.00 0.00 0.00 2.24
2345 3704 6.046593 TGGTTCACTTGCGATTACTATAAGG 58.953 40.000 0.00 0.00 0.00 2.69
2346 3705 6.127281 TGGTTCACTTGCGATTACTATAAGGA 60.127 38.462 0.00 0.00 0.00 3.36
2347 3706 6.421202 GGTTCACTTGCGATTACTATAAGGAG 59.579 42.308 0.00 0.00 0.00 3.69
2348 3707 5.529791 TCACTTGCGATTACTATAAGGAGC 58.470 41.667 0.00 0.00 0.00 4.70
2444 3803 1.613630 AAGATGTGGCCGAGACCCT 60.614 57.895 0.00 0.00 0.00 4.34
2549 3908 4.662961 TGTCACTGTGCCCGAGCG 62.663 66.667 2.12 0.00 44.31 5.03
2588 3947 4.337060 CGCTGTCCGTGACCGTGA 62.337 66.667 3.97 0.00 30.84 4.35
2591 3950 3.916392 CTGTCCGTGACCGTGAGCC 62.916 68.421 2.23 0.00 0.00 4.70
2648 4007 3.749064 GCGTCACTCTCTCGCCCA 61.749 66.667 0.00 0.00 43.41 5.36
2649 4008 2.487428 CGTCACTCTCTCGCCCAG 59.513 66.667 0.00 0.00 0.00 4.45
2650 4009 2.888863 GTCACTCTCTCGCCCAGG 59.111 66.667 0.00 0.00 0.00 4.45
2651 4010 3.071206 TCACTCTCTCGCCCAGGC 61.071 66.667 0.00 0.00 37.85 4.85
2675 4054 0.806868 CACGCAGGTCAAGATGCATT 59.193 50.000 0.00 0.00 42.68 3.56
2678 4057 0.379669 GCAGGTCAAGATGCATTCCG 59.620 55.000 0.00 0.00 42.11 4.30
2681 4060 1.134280 AGGTCAAGATGCATTCCGAGG 60.134 52.381 0.00 0.00 0.00 4.63
2682 4061 1.134401 GGTCAAGATGCATTCCGAGGA 60.134 52.381 0.00 0.00 0.00 3.71
2683 4062 2.486191 GGTCAAGATGCATTCCGAGGAT 60.486 50.000 0.00 0.00 0.00 3.24
2687 4066 5.471456 GTCAAGATGCATTCCGAGGATATTT 59.529 40.000 0.00 0.00 0.00 1.40
2690 4069 8.539544 TCAAGATGCATTCCGAGGATATTTATA 58.460 33.333 0.00 0.00 0.00 0.98
2710 4090 2.687700 ATGTTTGCCACAAAAGTGCA 57.312 40.000 0.00 0.00 39.50 4.57
2711 4091 1.719600 TGTTTGCCACAAAAGTGCAC 58.280 45.000 9.40 9.40 34.16 4.57
2730 4110 0.588252 CCTCCCGCTTGCGATATTTG 59.412 55.000 16.99 0.00 0.00 2.32
2738 4118 2.908634 CTTGCGATATTTGATGTCCGC 58.091 47.619 0.00 0.00 0.00 5.54
2745 4125 3.808692 TATTTGATGTCCGCTGGGGGC 62.809 57.143 8.62 8.62 42.42 5.80
2753 4133 2.418083 CCGCTGGGGGCAAAAGATC 61.418 63.158 2.21 0.00 41.91 2.75
2756 4136 1.681780 CGCTGGGGGCAAAAGATCTTA 60.682 52.381 8.75 0.00 41.91 2.10
2758 4138 2.017049 CTGGGGGCAAAAGATCTTACG 58.983 52.381 8.75 4.03 0.00 3.18
2759 4139 0.738975 GGGGGCAAAAGATCTTACGC 59.261 55.000 8.75 13.78 0.00 4.42
2781 4169 3.066190 TGCCATGAAGCTGCCTGC 61.066 61.111 0.00 0.00 43.29 4.85
2862 4251 6.689241 CACTAGTTTGCTCGTGTAGATTAGAG 59.311 42.308 0.00 0.00 34.76 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.316140 CCCAAATTTCAGTTCGACATCATCTA 59.684 38.462 0.00 0.00 0.00 1.98
2 3 5.335127 CCCAAATTTCAGTTCGACATCATC 58.665 41.667 0.00 0.00 0.00 2.92
11 12 9.554395 TTTAATTCTTTCCCCAAATTTCAGTTC 57.446 29.630 0.00 0.00 0.00 3.01
34 35 9.868277 CAAGCATATGTGTAATTTCCCTTTTTA 57.132 29.630 4.29 0.00 0.00 1.52
40 41 6.756542 GGAAACAAGCATATGTGTAATTTCCC 59.243 38.462 19.39 9.51 32.65 3.97
52 55 3.954258 GCCAACCTAGGAAACAAGCATAT 59.046 43.478 17.98 0.00 0.00 1.78
89 96 3.914426 ATAATACTCGCATCCATCCCC 57.086 47.619 0.00 0.00 0.00 4.81
134 141 8.619546 CAATCTTATAGGCAGAGAAAAAGGAAG 58.380 37.037 0.00 0.00 0.00 3.46
139 146 8.514594 CAACACAATCTTATAGGCAGAGAAAAA 58.485 33.333 0.00 0.00 0.00 1.94
143 150 5.189736 ACCAACACAATCTTATAGGCAGAGA 59.810 40.000 0.00 0.00 0.00 3.10
147 154 5.530915 GCATACCAACACAATCTTATAGGCA 59.469 40.000 0.00 0.00 0.00 4.75
148 155 5.765182 AGCATACCAACACAATCTTATAGGC 59.235 40.000 0.00 0.00 0.00 3.93
149 156 8.150945 ACTAGCATACCAACACAATCTTATAGG 58.849 37.037 0.00 0.00 0.00 2.57
153 160 9.899661 AATTACTAGCATACCAACACAATCTTA 57.100 29.630 0.00 0.00 0.00 2.10
154 161 8.807948 AATTACTAGCATACCAACACAATCTT 57.192 30.769 0.00 0.00 0.00 2.40
197 204 2.668550 GTGTGTCTTGGACCGCCC 60.669 66.667 0.00 0.00 0.00 6.13
214 221 3.008330 CAGAGATGCTGGAGGACAAAAG 58.992 50.000 0.00 0.00 41.07 2.27
228 235 6.419116 CGTGTAGGTACAATCATTCAGAGATG 59.581 42.308 0.00 0.00 38.04 2.90
234 241 4.195225 TGCGTGTAGGTACAATCATTCA 57.805 40.909 0.00 0.00 38.04 2.57
284 291 3.324556 AGCTCCTTTATGCTTGCCAAAAA 59.675 39.130 0.00 0.00 35.86 1.94
285 292 2.899256 AGCTCCTTTATGCTTGCCAAAA 59.101 40.909 0.00 0.00 35.86 2.44
300 307 3.012560 GCGGATGCAATTAGCTCCT 57.987 52.632 0.00 0.00 45.94 3.69
318 325 5.121221 AGGGACTTTTGCTTTTCGTATTG 57.879 39.130 0.00 0.00 27.25 1.90
329 336 3.009723 TCGATCAATGAGGGACTTTTGC 58.990 45.455 0.00 0.00 41.55 3.68
338 345 5.008019 CCAAAACCATACTCGATCAATGAGG 59.992 44.000 0.00 0.00 37.79 3.86
339 346 5.586243 ACCAAAACCATACTCGATCAATGAG 59.414 40.000 0.00 0.00 39.40 2.90
344 351 4.000325 CACACCAAAACCATACTCGATCA 59.000 43.478 0.00 0.00 0.00 2.92
349 356 4.648651 AGTACCACACCAAAACCATACTC 58.351 43.478 0.00 0.00 0.00 2.59
353 360 2.500229 CGAGTACCACACCAAAACCAT 58.500 47.619 0.00 0.00 0.00 3.55
361 368 0.886563 AGTGTAGCGAGTACCACACC 59.113 55.000 0.00 0.00 41.73 4.16
371 378 1.203994 GCTTTCCTGGTAGTGTAGCGA 59.796 52.381 0.00 0.00 0.00 4.93
379 386 6.575162 AACTTTTATGTGCTTTCCTGGTAG 57.425 37.500 0.00 0.00 0.00 3.18
409 416 9.268268 TCAGATTCGTACTTGAACATAGTTTTT 57.732 29.630 0.00 0.00 0.00 1.94
410 417 8.709646 GTCAGATTCGTACTTGAACATAGTTTT 58.290 33.333 0.00 0.00 0.00 2.43
486 493 8.879759 TCCTTCGTATTTGTATCAGATTTTGAC 58.120 33.333 0.00 0.00 38.99 3.18
491 498 8.012957 AGTCTCCTTCGTATTTGTATCAGATT 57.987 34.615 0.00 0.00 0.00 2.40
530 538 1.028130 GTGTAGCGGGTACTACCTCC 58.972 60.000 17.26 0.00 41.57 4.30
532 540 2.924421 GTAGTGTAGCGGGTACTACCT 58.076 52.381 17.26 12.44 41.57 3.08
545 553 9.715121 CTTTTTATGTACTTTCCTGGTAGTGTA 57.285 33.333 12.38 0.97 0.00 2.90
546 554 8.215736 ACTTTTTATGTACTTTCCTGGTAGTGT 58.784 33.333 12.38 1.76 0.00 3.55
570 578 5.279456 GGCCTTGTTTGGATCAATTGTAACT 60.279 40.000 5.13 0.00 0.00 2.24
634 642 6.820656 CCTAGCATCAGATTAGTGTGTTCTTT 59.179 38.462 0.00 0.00 0.00 2.52
658 666 0.596600 TATTCGCGGCGTTCTCATCC 60.597 55.000 22.90 0.00 0.00 3.51
677 685 3.586470 TTTGGTGTGTTGGTGTATCCT 57.414 42.857 0.00 0.00 37.07 3.24
743 751 2.563471 TTTAACCGCGTTTTGTGCTT 57.437 40.000 4.92 0.00 0.00 3.91
789 797 0.179089 CTTCCCTCCATCAGCTCACG 60.179 60.000 0.00 0.00 0.00 4.35
795 803 1.153005 GGCAGCTTCCCTCCATCAG 60.153 63.158 0.00 0.00 0.00 2.90
1003 1035 4.888239 GTGGCTATGAGACTTGGAGTACTA 59.112 45.833 0.00 0.00 0.00 1.82
1089 1129 2.583593 CGAGCAAGCTAGGCGGTC 60.584 66.667 0.00 0.52 36.08 4.79
1109 1152 2.434884 CGTGTCCATTGCCGCTCT 60.435 61.111 0.00 0.00 0.00 4.09
1950 2021 2.351350 CCCGCCATTTTATTATGCCGAC 60.351 50.000 0.00 0.00 28.63 4.79
1991 3308 3.986006 GTGGTCGTGTGAGGCCGA 61.986 66.667 0.00 0.00 0.00 5.54
1995 3312 2.231478 AGAAGTATGTGGTCGTGTGAGG 59.769 50.000 0.00 0.00 0.00 3.86
2002 3319 3.190079 CATGTCCAGAAGTATGTGGTCG 58.810 50.000 0.00 0.00 40.81 4.79
2003 3320 2.939103 GCATGTCCAGAAGTATGTGGTC 59.061 50.000 0.00 0.00 40.81 4.02
2025 3371 0.459237 ATTCTCGCTCGCCAGACTTG 60.459 55.000 0.00 0.00 0.00 3.16
2029 3375 0.179127 CTTCATTCTCGCTCGCCAGA 60.179 55.000 0.00 0.00 0.00 3.86
2031 3377 0.815095 TACTTCATTCTCGCTCGCCA 59.185 50.000 0.00 0.00 0.00 5.69
2035 3381 3.037324 GCGTAGTACTTCATTCTCGCTC 58.963 50.000 0.00 0.00 39.43 5.03
2059 3405 7.979537 GCCCTTGGTTGGTCTTATTTTAATAAG 59.020 37.037 13.58 13.58 45.83 1.73
2061 3407 7.186268 AGCCCTTGGTTGGTCTTATTTTAATA 58.814 34.615 0.00 0.00 0.00 0.98
2062 3408 6.022958 AGCCCTTGGTTGGTCTTATTTTAAT 58.977 36.000 0.00 0.00 0.00 1.40
2063 3409 5.399113 AGCCCTTGGTTGGTCTTATTTTAA 58.601 37.500 0.00 0.00 0.00 1.52
2064 3410 5.005628 AGCCCTTGGTTGGTCTTATTTTA 57.994 39.130 0.00 0.00 0.00 1.52
2065 3411 3.856900 AGCCCTTGGTTGGTCTTATTTT 58.143 40.909 0.00 0.00 0.00 1.82
2066 3412 3.542969 AGCCCTTGGTTGGTCTTATTT 57.457 42.857 0.00 0.00 0.00 1.40
2067 3413 4.341487 GTTAGCCCTTGGTTGGTCTTATT 58.659 43.478 0.00 0.00 0.00 1.40
2068 3414 3.308904 GGTTAGCCCTTGGTTGGTCTTAT 60.309 47.826 0.00 0.00 0.00 1.73
2069 3415 2.040679 GGTTAGCCCTTGGTTGGTCTTA 59.959 50.000 0.00 0.00 0.00 2.10
2070 3416 1.203013 GGTTAGCCCTTGGTTGGTCTT 60.203 52.381 0.00 0.00 0.00 3.01
2071 3417 0.404426 GGTTAGCCCTTGGTTGGTCT 59.596 55.000 0.00 0.00 0.00 3.85
2072 3418 2.957060 GGTTAGCCCTTGGTTGGTC 58.043 57.895 0.00 0.00 0.00 4.02
2103 3449 6.932400 TGCTCACGGAGTTTCTTCTATAAAAA 59.068 34.615 3.38 0.00 41.61 1.94
2104 3450 6.367969 GTGCTCACGGAGTTTCTTCTATAAAA 59.632 38.462 3.38 0.00 41.61 1.52
2105 3451 5.867716 GTGCTCACGGAGTTTCTTCTATAAA 59.132 40.000 3.38 0.00 41.61 1.40
2106 3452 5.408356 GTGCTCACGGAGTTTCTTCTATAA 58.592 41.667 3.38 0.00 41.61 0.98
2107 3453 4.142227 GGTGCTCACGGAGTTTCTTCTATA 60.142 45.833 3.38 0.00 41.61 1.31
2108 3454 3.368531 GGTGCTCACGGAGTTTCTTCTAT 60.369 47.826 3.38 0.00 41.61 1.98
2109 3455 2.029290 GGTGCTCACGGAGTTTCTTCTA 60.029 50.000 3.38 0.00 41.61 2.10
2110 3456 1.270358 GGTGCTCACGGAGTTTCTTCT 60.270 52.381 3.38 0.00 41.61 2.85
2111 3457 1.149148 GGTGCTCACGGAGTTTCTTC 58.851 55.000 3.38 0.00 41.61 2.87
2112 3458 0.600255 CGGTGCTCACGGAGTTTCTT 60.600 55.000 1.90 0.00 41.61 2.52
2113 3459 1.006102 CGGTGCTCACGGAGTTTCT 60.006 57.895 1.90 0.00 41.61 2.52
2114 3460 2.668280 GCGGTGCTCACGGAGTTTC 61.668 63.158 11.07 0.00 41.61 2.78
2115 3461 2.665185 GCGGTGCTCACGGAGTTT 60.665 61.111 11.07 0.00 41.61 2.66
2136 3482 2.599281 TTCGAGTCCCTGCACGGA 60.599 61.111 0.00 0.00 33.16 4.69
2137 3483 2.432628 GTTCGAGTCCCTGCACGG 60.433 66.667 0.00 0.00 0.00 4.94
2138 3484 1.444553 GAGTTCGAGTCCCTGCACG 60.445 63.158 0.00 0.00 0.00 5.34
2139 3485 1.444553 CGAGTTCGAGTCCCTGCAC 60.445 63.158 0.00 0.00 43.02 4.57
2140 3486 2.636412 CCGAGTTCGAGTCCCTGCA 61.636 63.158 2.59 0.00 43.02 4.41
2141 3487 1.668101 ATCCGAGTTCGAGTCCCTGC 61.668 60.000 2.59 0.00 43.02 4.85
2142 3488 0.101399 CATCCGAGTTCGAGTCCCTG 59.899 60.000 2.59 0.00 43.02 4.45
2143 3489 1.038130 CCATCCGAGTTCGAGTCCCT 61.038 60.000 2.59 0.00 43.02 4.20
2144 3490 1.437986 CCATCCGAGTTCGAGTCCC 59.562 63.158 2.59 0.00 43.02 4.46
2145 3491 1.437986 CCCATCCGAGTTCGAGTCC 59.562 63.158 2.59 0.00 43.02 3.85
2146 3492 1.227002 GCCCATCCGAGTTCGAGTC 60.227 63.158 2.59 0.00 43.02 3.36
2147 3493 1.682684 AGCCCATCCGAGTTCGAGT 60.683 57.895 2.59 0.00 43.02 4.18
2148 3494 1.227089 CAGCCCATCCGAGTTCGAG 60.227 63.158 2.59 0.00 43.02 4.04
2149 3495 2.721167 CCAGCCCATCCGAGTTCGA 61.721 63.158 2.59 0.00 43.02 3.71
2150 3496 2.202932 CCAGCCCATCCGAGTTCG 60.203 66.667 0.00 0.00 39.44 3.95
2151 3497 2.514824 GCCAGCCCATCCGAGTTC 60.515 66.667 0.00 0.00 0.00 3.01
2152 3498 2.905996 TTGCCAGCCCATCCGAGTT 61.906 57.895 0.00 0.00 0.00 3.01
2153 3499 3.329889 TTGCCAGCCCATCCGAGT 61.330 61.111 0.00 0.00 0.00 4.18
2154 3500 2.825836 GTTGCCAGCCCATCCGAG 60.826 66.667 0.00 0.00 0.00 4.63
2155 3501 3.203086 TTGTTGCCAGCCCATCCGA 62.203 57.895 0.00 0.00 0.00 4.55
2156 3502 2.676121 TTGTTGCCAGCCCATCCG 60.676 61.111 0.00 0.00 0.00 4.18
2157 3503 2.649129 GGTTGTTGCCAGCCCATCC 61.649 63.158 0.00 0.00 36.03 3.51
2158 3504 1.598701 GAGGTTGTTGCCAGCCCATC 61.599 60.000 0.00 0.00 42.60 3.51
2159 3505 1.607467 GAGGTTGTTGCCAGCCCAT 60.607 57.895 0.00 0.00 42.60 4.00
2160 3506 2.203480 GAGGTTGTTGCCAGCCCA 60.203 61.111 0.00 0.00 42.60 5.36
2161 3507 2.203480 TGAGGTTGTTGCCAGCCC 60.203 61.111 0.00 0.00 42.60 5.19
2162 3508 2.924105 GCTGAGGTTGTTGCCAGCC 61.924 63.158 0.00 0.00 44.39 4.85
2163 3509 2.647297 GCTGAGGTTGTTGCCAGC 59.353 61.111 0.00 0.00 44.00 4.85
2164 3510 1.954528 CAGCTGAGGTTGTTGCCAG 59.045 57.895 8.42 0.00 0.00 4.85
2165 3511 2.195567 GCAGCTGAGGTTGTTGCCA 61.196 57.895 20.43 0.00 35.99 4.92
2166 3512 2.647297 GCAGCTGAGGTTGTTGCC 59.353 61.111 20.43 0.00 35.99 4.52
2167 3513 2.647297 GGCAGCTGAGGTTGTTGC 59.353 61.111 20.43 0.00 40.18 4.17
2168 3514 1.521450 CTGGGCAGCTGAGGTTGTTG 61.521 60.000 20.43 0.00 0.00 3.33
2169 3515 1.228367 CTGGGCAGCTGAGGTTGTT 60.228 57.895 20.43 0.00 0.00 2.83
2170 3516 2.433446 CTGGGCAGCTGAGGTTGT 59.567 61.111 20.43 0.00 0.00 3.32
2194 3540 1.152383 GCTCATTTAGGGCGTCGACC 61.152 60.000 9.89 9.89 0.00 4.79
2195 3541 0.179108 AGCTCATTTAGGGCGTCGAC 60.179 55.000 5.18 5.18 0.00 4.20
2196 3542 0.535335 AAGCTCATTTAGGGCGTCGA 59.465 50.000 0.00 0.00 0.00 4.20
2197 3543 2.218953 TAAGCTCATTTAGGGCGTCG 57.781 50.000 0.00 0.00 0.00 5.12
2198 3544 6.293462 CCTTTTATAAGCTCATTTAGGGCGTC 60.293 42.308 0.00 0.00 0.00 5.19
2199 3545 5.531287 CCTTTTATAAGCTCATTTAGGGCGT 59.469 40.000 0.00 0.00 0.00 5.68
2200 3546 5.562890 GCCTTTTATAAGCTCATTTAGGGCG 60.563 44.000 0.00 0.00 0.00 6.13
2201 3547 5.562890 CGCCTTTTATAAGCTCATTTAGGGC 60.563 44.000 0.00 0.00 0.00 5.19
2202 3548 5.763204 TCGCCTTTTATAAGCTCATTTAGGG 59.237 40.000 0.00 0.00 0.00 3.53
2203 3549 6.861065 TCGCCTTTTATAAGCTCATTTAGG 57.139 37.500 0.00 0.00 0.00 2.69
2204 3550 8.087982 TCATCGCCTTTTATAAGCTCATTTAG 57.912 34.615 0.00 0.00 0.00 1.85
2223 3569 0.796312 TCGCTTTTCCTGTTCATCGC 59.204 50.000 0.00 0.00 0.00 4.58
2254 3613 3.499737 CATTCGTGTCAGCCGGCC 61.500 66.667 26.15 8.84 0.00 6.13
2255 3614 4.166011 GCATTCGTGTCAGCCGGC 62.166 66.667 21.89 21.89 0.00 6.13
2256 3615 3.499737 GGCATTCGTGTCAGCCGG 61.500 66.667 0.00 0.00 37.41 6.13
2274 3633 2.356695 GCGGGTTCATTATTTTACGGCT 59.643 45.455 0.00 0.00 0.00 5.52
2277 3636 5.224562 TCTTGCGGGTTCATTATTTTACG 57.775 39.130 0.00 0.00 0.00 3.18
2329 3688 4.795268 CTCGCTCCTTATAGTAATCGCAA 58.205 43.478 0.00 0.00 0.00 4.85
2334 3693 3.120269 CGTCGCTCGCTCCTTATAGTAAT 60.120 47.826 0.00 0.00 0.00 1.89
2339 3698 0.585357 GACGTCGCTCGCTCCTTATA 59.415 55.000 0.00 0.00 44.19 0.98
2345 3704 2.634702 CTAGTGGACGTCGCTCGCTC 62.635 65.000 9.92 0.00 44.19 5.03
2346 3705 2.745100 TAGTGGACGTCGCTCGCT 60.745 61.111 9.92 10.27 44.19 4.93
2347 3706 2.277373 CTAGTGGACGTCGCTCGC 60.277 66.667 9.92 2.47 44.19 5.03
2348 3707 0.520827 GAACTAGTGGACGTCGCTCG 60.521 60.000 9.92 8.83 46.00 5.03
2406 3765 5.768317 TCTTGTGGCTTAATTGCAGTTTAC 58.232 37.500 0.00 0.00 34.04 2.01
2412 3771 4.177165 CACATCTTGTGGCTTAATTGCA 57.823 40.909 0.00 0.00 44.27 4.08
2444 3803 1.773856 TTTCACCGGCTGACATGGGA 61.774 55.000 0.00 0.00 0.00 4.37
2502 3861 1.004927 GGGCACGAAATCGAAATCTCG 60.005 52.381 10.16 0.00 46.87 4.04
2549 3908 1.450312 CATCCCCACTGAAGCGACC 60.450 63.158 0.00 0.00 0.00 4.79
2555 3914 2.966732 GCGACCCATCCCCACTGAA 61.967 63.158 0.00 0.00 0.00 3.02
2651 4010 2.809861 ATCTTGACCTGCGTGCTGGG 62.810 60.000 19.97 11.67 39.05 4.45
2653 4012 1.792301 CATCTTGACCTGCGTGCTG 59.208 57.895 0.00 0.00 0.00 4.41
2655 4014 1.651240 ATGCATCTTGACCTGCGTGC 61.651 55.000 0.00 0.00 41.32 5.34
2656 4015 0.806868 AATGCATCTTGACCTGCGTG 59.193 50.000 0.00 0.00 41.32 5.34
2675 4054 7.174253 GTGGCAAACATTATAAATATCCTCGGA 59.826 37.037 0.00 0.00 0.00 4.55
2710 4090 0.180406 AAATATCGCAAGCGGGAGGT 59.820 50.000 14.98 0.00 46.35 3.85
2711 4091 0.588252 CAAATATCGCAAGCGGGAGG 59.412 55.000 14.98 0.00 37.53 4.30
2722 4102 1.800586 CCCAGCGGACATCAAATATCG 59.199 52.381 0.00 0.00 0.00 2.92
2738 4118 2.017049 CGTAAGATCTTTTGCCCCCAG 58.983 52.381 14.36 0.00 43.02 4.45
2745 4125 3.241995 GGCACTACGCGTAAGATCTTTTG 60.242 47.826 20.97 7.73 43.84 2.44
2753 4133 1.588404 CTTCATGGCACTACGCGTAAG 59.412 52.381 20.97 16.22 43.84 2.34
2756 4136 2.100631 GCTTCATGGCACTACGCGT 61.101 57.895 19.17 19.17 43.84 6.01
2758 4138 1.717937 CAGCTTCATGGCACTACGC 59.282 57.895 0.00 0.00 41.28 4.42
2759 4139 1.709147 GGCAGCTTCATGGCACTACG 61.709 60.000 0.00 0.00 44.71 3.51
2781 4169 4.713792 AGAAATACAGCCTATTCTGGGG 57.286 45.455 0.00 0.00 38.36 4.96
2819 4208 1.148273 GGATGGATGCTGCCCGTTA 59.852 57.895 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.