Multiple sequence alignment - TraesCS5D01G313700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G313700 chr5D 100.000 2998 0 0 1 2998 408771141 408768144 0.000000e+00 5537
1 TraesCS5D01G313700 chr5D 85.659 781 103 4 1049 1823 408649705 408648928 0.000000e+00 813
2 TraesCS5D01G313700 chr5D 78.822 883 116 45 1024 1863 408659806 408658952 2.050000e-146 529
3 TraesCS5D01G313700 chr5D 78.757 885 117 42 1022 1863 408742500 408741644 7.360000e-146 527
4 TraesCS5D01G313700 chr5D 97.925 241 4 1 2758 2998 472778671 472778432 1.660000e-112 416
5 TraesCS5D01G313700 chr5A 89.745 2038 145 30 1 2015 519694988 519692992 0.000000e+00 2547
6 TraesCS5D01G313700 chr5A 86.629 1608 168 30 422 2015 518411239 518412813 0.000000e+00 1735
7 TraesCS5D01G313700 chr5A 89.419 671 28 11 2327 2960 649414632 649415296 0.000000e+00 806
8 TraesCS5D01G313700 chr5A 82.777 569 80 12 1298 1863 515495810 515495257 2.690000e-135 492
9 TraesCS5D01G313700 chr5A 79.297 768 108 28 1129 1863 516814964 516815713 9.660000e-135 490
10 TraesCS5D01G313700 chr5B 94.243 1129 54 5 834 1962 490612254 490611137 0.000000e+00 1714
11 TraesCS5D01G313700 chr5B 79.322 885 112 43 1022 1863 490359501 490358645 3.380000e-154 555
12 TraesCS5D01G313700 chr5B 88.496 452 43 4 1378 1823 490232667 490232219 3.400000e-149 538
13 TraesCS5D01G313700 chr7B 91.243 708 25 7 2327 2998 707461852 707462558 0.000000e+00 929
14 TraesCS5D01G313700 chr7B 90.000 490 36 12 2327 2808 211827017 211826533 3.280000e-174 621
15 TraesCS5D01G313700 chr3D 88.999 709 30 14 2327 2998 575097316 575098013 0.000000e+00 833
16 TraesCS5D01G313700 chr3D 91.992 487 25 10 2327 2805 428551138 428550658 0.000000e+00 671
17 TraesCS5D01G313700 chr3D 97.510 241 5 1 2758 2998 428550666 428550427 7.730000e-111 411
18 TraesCS5D01G313700 chr2A 89.000 700 42 21 2327 2998 174339493 174340185 0.000000e+00 833
19 TraesCS5D01G313700 chr7D 86.589 686 56 23 2327 2998 22215772 22215109 0.000000e+00 725
20 TraesCS5D01G313700 chr7D 90.083 484 32 12 2326 2799 604391279 604391756 5.490000e-172 614
21 TraesCS5D01G313700 chr4D 91.304 483 26 12 2327 2799 503077559 503078035 0.000000e+00 645
22 TraesCS5D01G313700 chr4D 97.521 242 5 1 2758 2998 18972608 18972849 2.150000e-111 412
23 TraesCS5D01G313700 chr2D 90.349 487 26 14 2327 2799 531479573 531480052 1.180000e-173 619
24 TraesCS5D01G313700 chr2D 96.694 242 7 1 2758 2998 2160233 2159992 4.660000e-108 401
25 TraesCS5D01G313700 chrUn 91.515 330 18 5 2675 2998 46032483 46032808 2.120000e-121 446
26 TraesCS5D01G313700 chr3A 91.987 312 19 4 2691 2998 284638485 284638794 1.650000e-117 433
27 TraesCS5D01G313700 chr1D 96.680 241 7 1 2758 2998 361199168 361199407 1.670000e-107 399
28 TraesCS5D01G313700 chr1D 87.234 329 32 9 2677 2998 231971614 231971289 1.700000e-97 366


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G313700 chr5D 408768144 408771141 2997 True 5537 5537 100.000 1 2998 1 chr5D.!!$R4 2997
1 TraesCS5D01G313700 chr5D 408648928 408649705 777 True 813 813 85.659 1049 1823 1 chr5D.!!$R1 774
2 TraesCS5D01G313700 chr5D 408658952 408659806 854 True 529 529 78.822 1024 1863 1 chr5D.!!$R2 839
3 TraesCS5D01G313700 chr5D 408741644 408742500 856 True 527 527 78.757 1022 1863 1 chr5D.!!$R3 841
4 TraesCS5D01G313700 chr5A 519692992 519694988 1996 True 2547 2547 89.745 1 2015 1 chr5A.!!$R2 2014
5 TraesCS5D01G313700 chr5A 518411239 518412813 1574 False 1735 1735 86.629 422 2015 1 chr5A.!!$F2 1593
6 TraesCS5D01G313700 chr5A 649414632 649415296 664 False 806 806 89.419 2327 2960 1 chr5A.!!$F3 633
7 TraesCS5D01G313700 chr5A 515495257 515495810 553 True 492 492 82.777 1298 1863 1 chr5A.!!$R1 565
8 TraesCS5D01G313700 chr5A 516814964 516815713 749 False 490 490 79.297 1129 1863 1 chr5A.!!$F1 734
9 TraesCS5D01G313700 chr5B 490611137 490612254 1117 True 1714 1714 94.243 834 1962 1 chr5B.!!$R3 1128
10 TraesCS5D01G313700 chr5B 490358645 490359501 856 True 555 555 79.322 1022 1863 1 chr5B.!!$R2 841
11 TraesCS5D01G313700 chr7B 707461852 707462558 706 False 929 929 91.243 2327 2998 1 chr7B.!!$F1 671
12 TraesCS5D01G313700 chr3D 575097316 575098013 697 False 833 833 88.999 2327 2998 1 chr3D.!!$F1 671
13 TraesCS5D01G313700 chr3D 428550427 428551138 711 True 541 671 94.751 2327 2998 2 chr3D.!!$R1 671
14 TraesCS5D01G313700 chr2A 174339493 174340185 692 False 833 833 89.000 2327 2998 1 chr2A.!!$F1 671
15 TraesCS5D01G313700 chr7D 22215109 22215772 663 True 725 725 86.589 2327 2998 1 chr7D.!!$R1 671

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
459 464 0.101579 GTCTTCTAGCTCGGACCAGC 59.898 60.0 7.59 7.59 39.99 4.85 F
528 534 0.179018 AACCACTTGCCTCCACTGTC 60.179 55.0 0.00 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1883 1963 0.533978 GCTGCTCTAGGGCTTTAGGC 60.534 60.000 17.26 8.53 40.9 3.93 R
2325 2409 1.079127 CCCGGTTCTGCACTAGTGG 60.079 63.158 23.95 8.81 0.0 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 48 5.525378 CCATGGTCAGCAACTCTATTTAGTC 59.475 44.000 2.57 0.00 0.00 2.59
62 65 9.932699 CTATTTAGTCTTCATGCAAATTCTCAG 57.067 33.333 0.00 0.00 0.00 3.35
71 74 7.585579 TCATGCAAATTCTCAGGCATAATAA 57.414 32.000 0.00 0.00 44.55 1.40
72 75 7.654568 TCATGCAAATTCTCAGGCATAATAAG 58.345 34.615 0.00 0.00 44.55 1.73
90 93 9.317936 CATAATAAGAAGAGTGCTTGTATGTGA 57.682 33.333 0.00 0.00 33.61 3.58
144 147 4.402056 ACAAACTTCACTCGGAGAAGAA 57.598 40.909 12.86 13.47 44.00 2.52
145 148 4.766375 ACAAACTTCACTCGGAGAAGAAA 58.234 39.130 12.86 0.00 44.00 2.52
150 153 3.936372 TCACTCGGAGAAGAAACGAAT 57.064 42.857 12.86 0.00 36.08 3.34
151 154 5.048224 ACTTCACTCGGAGAAGAAACGAATA 60.048 40.000 12.86 0.00 44.00 1.75
293 296 4.927425 TGTACGCTCTCACTTAATTTGGTC 59.073 41.667 0.00 0.00 0.00 4.02
302 305 8.873215 TCTCACTTAATTTGGTCTTCGATATC 57.127 34.615 0.00 0.00 0.00 1.63
364 369 0.678048 GGCTAGGGGTCAGTTGCTTG 60.678 60.000 0.00 0.00 0.00 4.01
386 391 2.507339 AACAGTTTTGTGCCCAATCG 57.493 45.000 0.00 0.00 37.67 3.34
394 399 2.077413 TGTGCCCAATCGATTTTTGC 57.923 45.000 8.21 11.62 0.00 3.68
409 414 8.547967 TCGATTTTTGCTGTTCTATCTAAACT 57.452 30.769 0.00 0.00 0.00 2.66
410 415 9.647797 TCGATTTTTGCTGTTCTATCTAAACTA 57.352 29.630 0.00 0.00 0.00 2.24
459 464 0.101579 GTCTTCTAGCTCGGACCAGC 59.898 60.000 7.59 7.59 39.99 4.85
464 469 3.430565 TAGCTCGGACCAGCATGCG 62.431 63.158 13.01 7.31 42.40 4.73
481 487 2.650322 TGCGTTGTTCCTCTTTTCCTT 58.350 42.857 0.00 0.00 0.00 3.36
491 497 3.117888 TCCTCTTTTCCTTTGACAGCTGT 60.118 43.478 21.88 21.88 0.00 4.40
525 531 0.468029 CCAAACCACTTGCCTCCACT 60.468 55.000 0.00 0.00 33.27 4.00
528 534 0.179018 AACCACTTGCCTCCACTGTC 60.179 55.000 0.00 0.00 0.00 3.51
532 538 1.071987 CTTGCCTCCACTGTCTGCA 59.928 57.895 0.00 0.00 0.00 4.41
548 554 0.523519 TGCAGTCAGCTACACTCTCG 59.476 55.000 0.00 0.00 45.94 4.04
550 556 0.523519 CAGTCAGCTACACTCTCGCA 59.476 55.000 0.00 0.00 0.00 5.10
562 568 2.099652 CTCTCGCAACCACCTCACCA 62.100 60.000 0.00 0.00 0.00 4.17
566 572 2.923035 CAACCACCTCACCACCCA 59.077 61.111 0.00 0.00 0.00 4.51
567 573 1.228245 CAACCACCTCACCACCCAG 60.228 63.158 0.00 0.00 0.00 4.45
571 577 2.529389 ACCTCACCACCCAGTCCC 60.529 66.667 0.00 0.00 0.00 4.46
593 599 3.064987 ATCGACTTCCCTCACCGCG 62.065 63.158 0.00 0.00 0.00 6.46
690 696 3.718815 GTCAAGTTTCGAACTCACCTCT 58.281 45.455 0.00 0.00 41.91 3.69
699 705 1.751924 GAACTCACCTCTGCCGACTAT 59.248 52.381 0.00 0.00 0.00 2.12
777 784 4.022416 TGACTGACCCAAATTCAAAATCCG 60.022 41.667 0.00 0.00 0.00 4.18
779 786 2.896685 TGACCCAAATTCAAAATCCGCT 59.103 40.909 0.00 0.00 0.00 5.52
806 833 9.570488 AAACTGTCTTATAAATGACTACGTCTC 57.430 33.333 0.00 0.00 34.57 3.36
807 834 8.508883 ACTGTCTTATAAATGACTACGTCTCT 57.491 34.615 0.00 0.00 34.57 3.10
808 835 9.610705 ACTGTCTTATAAATGACTACGTCTCTA 57.389 33.333 0.00 0.00 34.57 2.43
809 836 9.866936 CTGTCTTATAAATGACTACGTCTCTAC 57.133 37.037 0.00 0.00 34.57 2.59
810 837 8.546244 TGTCTTATAAATGACTACGTCTCTACG 58.454 37.037 0.00 0.00 42.69 3.51
891 921 3.002348 GCGGGAGGAATACAAATCGAAAG 59.998 47.826 0.00 0.00 0.00 2.62
900 930 2.627945 ACAAATCGAAAGCGGCATCTA 58.372 42.857 1.45 0.00 38.28 1.98
901 931 2.351726 ACAAATCGAAAGCGGCATCTAC 59.648 45.455 1.45 0.00 38.28 2.59
937 967 3.060895 CACGTCATTTAAGCGAGGTCTTC 59.939 47.826 0.00 0.00 0.00 2.87
982 1014 1.140252 AGTACAAAAGACGCCCACACT 59.860 47.619 0.00 0.00 0.00 3.55
994 1026 0.391263 CCCACACTCCCTTCGCTAAC 60.391 60.000 0.00 0.00 0.00 2.34
1063 1101 1.219124 GCCATGGACGAGCTTCTCA 59.781 57.895 18.40 0.00 0.00 3.27
1219 1257 2.128507 AAGAGCGAGGACGGGGATC 61.129 63.158 0.00 0.00 40.15 3.36
1865 1945 0.459237 CTGCTCCAGAGGCTACGTTG 60.459 60.000 0.00 0.00 32.44 4.10
1872 1952 4.308458 AGGCTACGTTGCACCGCA 62.308 61.111 22.89 0.00 36.47 5.69
1888 1968 3.588277 GCATAGTAGCGCTGCCTAA 57.412 52.632 22.90 7.79 0.00 2.69
1891 1971 1.795286 CATAGTAGCGCTGCCTAAAGC 59.205 52.381 22.90 0.00 44.14 3.51
1962 2042 1.464608 CGTTCCGGAGTACTACAACGA 59.535 52.381 20.58 4.01 34.74 3.85
2002 2086 8.400184 TGCTATTCTCCATGGAATAAATCAAG 57.600 34.615 17.00 11.36 37.61 3.02
2009 2093 4.214119 CCATGGAATAAATCAAGCGACGAT 59.786 41.667 5.56 0.00 0.00 3.73
2010 2094 4.794248 TGGAATAAATCAAGCGACGATG 57.206 40.909 0.00 0.00 0.00 3.84
2011 2095 4.188462 TGGAATAAATCAAGCGACGATGT 58.812 39.130 0.00 0.00 0.00 3.06
2012 2096 5.353111 TGGAATAAATCAAGCGACGATGTA 58.647 37.500 0.00 0.00 0.00 2.29
2013 2097 5.989168 TGGAATAAATCAAGCGACGATGTAT 59.011 36.000 0.00 0.00 0.00 2.29
2015 2099 7.010023 GGAATAAATCAAGCGACGATGTATTC 58.990 38.462 18.39 18.39 43.44 1.75
2016 2100 7.307160 GGAATAAATCAAGCGACGATGTATTCA 60.307 37.037 23.23 0.00 44.71 2.57
2017 2101 5.991328 AAATCAAGCGACGATGTATTCAT 57.009 34.783 0.00 0.00 36.95 2.57
2018 2102 8.757164 ATAAATCAAGCGACGATGTATTCATA 57.243 30.769 0.00 0.00 34.06 2.15
2019 2103 6.453643 AATCAAGCGACGATGTATTCATAC 57.546 37.500 0.00 0.00 34.06 2.39
2020 2104 5.183014 TCAAGCGACGATGTATTCATACT 57.817 39.130 0.00 0.00 34.06 2.12
2021 2105 6.308371 TCAAGCGACGATGTATTCATACTA 57.692 37.500 0.00 0.00 34.06 1.82
2022 2106 6.731164 TCAAGCGACGATGTATTCATACTAA 58.269 36.000 0.00 0.00 34.06 2.24
2023 2107 7.368059 TCAAGCGACGATGTATTCATACTAAT 58.632 34.615 0.00 0.00 34.06 1.73
2024 2108 8.508875 TCAAGCGACGATGTATTCATACTAATA 58.491 33.333 0.00 0.00 34.06 0.98
2025 2109 8.576281 CAAGCGACGATGTATTCATACTAATAC 58.424 37.037 0.00 0.00 40.98 1.89
2026 2110 8.041829 AGCGACGATGTATTCATACTAATACT 57.958 34.615 0.00 0.00 41.12 2.12
2027 2111 9.159364 AGCGACGATGTATTCATACTAATACTA 57.841 33.333 0.00 0.00 41.12 1.82
2028 2112 9.423427 GCGACGATGTATTCATACTAATACTAG 57.577 37.037 0.00 0.00 41.12 2.57
2029 2113 9.423427 CGACGATGTATTCATACTAATACTAGC 57.577 37.037 7.91 0.00 41.12 3.42
2030 2114 9.719279 GACGATGTATTCATACTAATACTAGCC 57.281 37.037 7.91 0.00 41.12 3.93
2031 2115 8.684520 ACGATGTATTCATACTAATACTAGCCC 58.315 37.037 7.91 0.00 41.12 5.19
2032 2116 8.136165 CGATGTATTCATACTAATACTAGCCCC 58.864 40.741 7.91 0.00 41.12 5.80
2033 2117 8.911018 ATGTATTCATACTAATACTAGCCCCA 57.089 34.615 7.91 0.00 41.12 4.96
2034 2118 8.911018 TGTATTCATACTAATACTAGCCCCAT 57.089 34.615 7.91 0.00 41.12 4.00
2038 2122 8.967779 TTCATACTAATACTAGCCCCATAGTT 57.032 34.615 0.00 0.00 37.24 2.24
2043 2127 8.363761 ACTAATACTAGCCCCATAGTTATCAC 57.636 38.462 0.00 0.00 37.24 3.06
2044 2128 5.916661 ATACTAGCCCCATAGTTATCACG 57.083 43.478 0.00 0.00 37.24 4.35
2045 2129 2.897969 ACTAGCCCCATAGTTATCACGG 59.102 50.000 0.00 0.00 31.89 4.94
2046 2130 2.097110 AGCCCCATAGTTATCACGGA 57.903 50.000 0.00 0.00 0.00 4.69
2047 2131 2.404559 AGCCCCATAGTTATCACGGAA 58.595 47.619 0.00 0.00 0.00 4.30
2048 2132 2.979678 AGCCCCATAGTTATCACGGAAT 59.020 45.455 0.00 0.00 0.00 3.01
2049 2133 4.164981 AGCCCCATAGTTATCACGGAATA 58.835 43.478 0.00 0.00 0.00 1.75
2050 2134 4.783227 AGCCCCATAGTTATCACGGAATAT 59.217 41.667 0.00 0.00 0.00 1.28
2051 2135 5.104900 AGCCCCATAGTTATCACGGAATATC 60.105 44.000 0.00 0.00 0.00 1.63
2052 2136 5.348986 CCCCATAGTTATCACGGAATATCG 58.651 45.833 0.00 0.00 0.00 2.92
2053 2137 4.804139 CCCATAGTTATCACGGAATATCGC 59.196 45.833 0.00 0.00 0.00 4.58
2054 2138 5.394224 CCCATAGTTATCACGGAATATCGCT 60.394 44.000 0.00 0.00 0.00 4.93
2055 2139 5.516696 CCATAGTTATCACGGAATATCGCTG 59.483 44.000 0.00 0.00 0.00 5.18
2056 2140 4.848562 AGTTATCACGGAATATCGCTGA 57.151 40.909 0.00 0.00 0.00 4.26
2057 2141 5.196341 AGTTATCACGGAATATCGCTGAA 57.804 39.130 0.00 0.00 0.00 3.02
2058 2142 4.982916 AGTTATCACGGAATATCGCTGAAC 59.017 41.667 0.00 0.00 0.00 3.18
2059 2143 1.835121 TCACGGAATATCGCTGAACG 58.165 50.000 0.00 0.00 45.62 3.95
2068 2152 4.700037 CGCTGAACGAGCCTCTAG 57.300 61.111 0.00 0.00 46.01 2.43
2069 2153 1.803943 CGCTGAACGAGCCTCTAGT 59.196 57.895 0.00 0.00 46.01 2.57
2070 2154 0.171455 CGCTGAACGAGCCTCTAGTT 59.829 55.000 0.00 0.00 46.01 2.24
2071 2155 1.634702 GCTGAACGAGCCTCTAGTTG 58.365 55.000 0.00 0.00 42.54 3.16
2072 2156 1.067495 GCTGAACGAGCCTCTAGTTGT 60.067 52.381 0.00 0.00 42.54 3.32
2073 2157 2.610727 GCTGAACGAGCCTCTAGTTGTT 60.611 50.000 0.00 0.00 42.54 2.83
2074 2158 3.367087 GCTGAACGAGCCTCTAGTTGTTA 60.367 47.826 0.00 0.00 42.54 2.41
2075 2159 4.416620 CTGAACGAGCCTCTAGTTGTTAG 58.583 47.826 0.00 0.00 30.05 2.34
2076 2160 3.192844 TGAACGAGCCTCTAGTTGTTAGG 59.807 47.826 0.00 0.00 30.05 2.69
2077 2161 2.805194 ACGAGCCTCTAGTTGTTAGGT 58.195 47.619 0.00 0.00 32.67 3.08
2078 2162 2.492484 ACGAGCCTCTAGTTGTTAGGTG 59.508 50.000 0.00 0.00 32.67 4.00
2079 2163 2.753452 CGAGCCTCTAGTTGTTAGGTGA 59.247 50.000 0.00 0.00 32.67 4.02
2080 2164 3.381908 CGAGCCTCTAGTTGTTAGGTGAT 59.618 47.826 0.00 0.00 32.67 3.06
2081 2165 4.142138 CGAGCCTCTAGTTGTTAGGTGATT 60.142 45.833 0.00 0.00 32.67 2.57
2082 2166 5.624738 CGAGCCTCTAGTTGTTAGGTGATTT 60.625 44.000 0.00 0.00 32.67 2.17
2083 2167 5.735766 AGCCTCTAGTTGTTAGGTGATTTC 58.264 41.667 0.00 0.00 32.67 2.17
2084 2168 4.567159 GCCTCTAGTTGTTAGGTGATTTCG 59.433 45.833 0.00 0.00 32.67 3.46
2085 2169 5.721232 CCTCTAGTTGTTAGGTGATTTCGT 58.279 41.667 0.00 0.00 0.00 3.85
2086 2170 5.805994 CCTCTAGTTGTTAGGTGATTTCGTC 59.194 44.000 0.00 0.00 0.00 4.20
2087 2171 6.335471 TCTAGTTGTTAGGTGATTTCGTCA 57.665 37.500 0.00 0.00 0.00 4.35
2088 2172 6.751157 TCTAGTTGTTAGGTGATTTCGTCAA 58.249 36.000 0.00 0.00 38.90 3.18
2089 2173 7.383687 TCTAGTTGTTAGGTGATTTCGTCAAT 58.616 34.615 0.00 0.00 38.90 2.57
2090 2174 6.481954 AGTTGTTAGGTGATTTCGTCAATC 57.518 37.500 3.88 3.88 41.76 2.67
2091 2175 6.231211 AGTTGTTAGGTGATTTCGTCAATCT 58.769 36.000 10.22 0.01 41.91 2.40
2092 2176 6.369065 AGTTGTTAGGTGATTTCGTCAATCTC 59.631 38.462 10.22 7.32 41.91 2.75
2093 2177 5.789521 TGTTAGGTGATTTCGTCAATCTCA 58.210 37.500 10.22 0.00 41.91 3.27
2094 2178 6.227522 TGTTAGGTGATTTCGTCAATCTCAA 58.772 36.000 10.22 0.00 41.91 3.02
2095 2179 6.368791 TGTTAGGTGATTTCGTCAATCTCAAG 59.631 38.462 10.22 0.00 41.91 3.02
2096 2180 5.152623 AGGTGATTTCGTCAATCTCAAGA 57.847 39.130 10.22 0.00 41.91 3.02
2097 2181 4.932200 AGGTGATTTCGTCAATCTCAAGAC 59.068 41.667 10.22 0.00 41.91 3.01
2098 2182 4.932200 GGTGATTTCGTCAATCTCAAGACT 59.068 41.667 10.22 0.00 41.91 3.24
2099 2183 5.409826 GGTGATTTCGTCAATCTCAAGACTT 59.590 40.000 10.22 0.00 41.91 3.01
2100 2184 6.590292 GGTGATTTCGTCAATCTCAAGACTTA 59.410 38.462 10.22 0.00 41.91 2.24
2101 2185 7.278868 GGTGATTTCGTCAATCTCAAGACTTAT 59.721 37.037 10.22 0.00 41.91 1.73
2102 2186 8.324567 GTGATTTCGTCAATCTCAAGACTTATC 58.675 37.037 10.22 0.00 41.91 1.75
2103 2187 6.871044 TTTCGTCAATCTCAAGACTTATCG 57.129 37.500 0.00 0.00 32.68 2.92
2104 2188 5.813080 TCGTCAATCTCAAGACTTATCGA 57.187 39.130 0.00 0.00 32.68 3.59
2105 2189 5.811588 TCGTCAATCTCAAGACTTATCGAG 58.188 41.667 0.00 0.00 32.68 4.04
2106 2190 4.439449 CGTCAATCTCAAGACTTATCGAGC 59.561 45.833 0.00 0.00 32.68 5.03
2107 2191 5.344066 GTCAATCTCAAGACTTATCGAGCA 58.656 41.667 0.00 0.00 0.00 4.26
2108 2192 5.807520 GTCAATCTCAAGACTTATCGAGCAA 59.192 40.000 0.00 0.00 0.00 3.91
2109 2193 6.478344 GTCAATCTCAAGACTTATCGAGCAAT 59.522 38.462 0.00 0.00 0.00 3.56
2110 2194 7.649705 GTCAATCTCAAGACTTATCGAGCAATA 59.350 37.037 0.00 0.00 0.00 1.90
2111 2195 7.649705 TCAATCTCAAGACTTATCGAGCAATAC 59.350 37.037 0.00 0.00 0.00 1.89
2112 2196 5.833082 TCTCAAGACTTATCGAGCAATACC 58.167 41.667 0.00 0.00 0.00 2.73
2113 2197 5.594725 TCTCAAGACTTATCGAGCAATACCT 59.405 40.000 0.00 0.00 0.00 3.08
2114 2198 5.833082 TCAAGACTTATCGAGCAATACCTC 58.167 41.667 0.00 0.00 0.00 3.85
2115 2199 5.359860 TCAAGACTTATCGAGCAATACCTCA 59.640 40.000 0.00 0.00 0.00 3.86
2116 2200 5.854010 AGACTTATCGAGCAATACCTCAA 57.146 39.130 0.00 0.00 0.00 3.02
2117 2201 6.222038 AGACTTATCGAGCAATACCTCAAA 57.778 37.500 0.00 0.00 0.00 2.69
2118 2202 6.821388 AGACTTATCGAGCAATACCTCAAAT 58.179 36.000 0.00 0.00 0.00 2.32
2119 2203 7.952671 AGACTTATCGAGCAATACCTCAAATA 58.047 34.615 0.00 0.00 0.00 1.40
2120 2204 8.589338 AGACTTATCGAGCAATACCTCAAATAT 58.411 33.333 0.00 0.00 0.00 1.28
2121 2205 8.539770 ACTTATCGAGCAATACCTCAAATATG 57.460 34.615 0.00 0.00 0.00 1.78
2122 2206 8.150945 ACTTATCGAGCAATACCTCAAATATGT 58.849 33.333 0.00 0.00 0.00 2.29
2123 2207 8.902540 TTATCGAGCAATACCTCAAATATGTT 57.097 30.769 0.00 0.00 0.00 2.71
2124 2208 6.844696 TCGAGCAATACCTCAAATATGTTC 57.155 37.500 0.00 0.00 0.00 3.18
2125 2209 5.462068 TCGAGCAATACCTCAAATATGTTCG 59.538 40.000 0.00 0.00 0.00 3.95
2126 2210 5.234329 CGAGCAATACCTCAAATATGTTCGT 59.766 40.000 0.00 0.00 0.00 3.85
2127 2211 6.419710 CGAGCAATACCTCAAATATGTTCGTA 59.580 38.462 0.00 0.00 0.00 3.43
2128 2212 7.358435 CGAGCAATACCTCAAATATGTTCGTAG 60.358 40.741 0.00 0.00 0.00 3.51
2129 2213 7.497595 AGCAATACCTCAAATATGTTCGTAGA 58.502 34.615 0.00 0.00 0.00 2.59
2130 2214 7.985184 AGCAATACCTCAAATATGTTCGTAGAA 59.015 33.333 0.00 0.00 45.90 2.10
2131 2215 8.774586 GCAATACCTCAAATATGTTCGTAGAAT 58.225 33.333 0.00 0.00 45.90 2.40
2136 2220 9.261180 ACCTCAAATATGTTCGTAGAATATGTG 57.739 33.333 2.90 0.00 45.90 3.21
2137 2221 9.261180 CCTCAAATATGTTCGTAGAATATGTGT 57.739 33.333 2.90 0.00 45.90 3.72
2139 2223 9.594478 TCAAATATGTTCGTAGAATATGTGTGT 57.406 29.630 2.90 0.00 45.90 3.72
2142 2226 9.594478 AATATGTTCGTAGAATATGTGTGTTCA 57.406 29.630 2.90 0.00 45.90 3.18
2143 2227 9.764363 ATATGTTCGTAGAATATGTGTGTTCAT 57.236 29.630 2.90 0.00 45.90 2.57
2145 2229 8.989653 TGTTCGTAGAATATGTGTGTTCATAA 57.010 30.769 0.00 0.00 45.90 1.90
2146 2230 9.083080 TGTTCGTAGAATATGTGTGTTCATAAG 57.917 33.333 0.00 0.00 45.90 1.73
2147 2231 8.540492 GTTCGTAGAATATGTGTGTTCATAAGG 58.460 37.037 0.00 0.00 45.90 2.69
2148 2232 7.207383 TCGTAGAATATGTGTGTTCATAAGGG 58.793 38.462 0.00 0.00 34.58 3.95
2149 2233 6.984474 CGTAGAATATGTGTGTTCATAAGGGT 59.016 38.462 0.00 0.00 34.58 4.34
2150 2234 7.042725 CGTAGAATATGTGTGTTCATAAGGGTG 60.043 40.741 0.00 0.00 34.58 4.61
2151 2235 6.957631 AGAATATGTGTGTTCATAAGGGTGA 58.042 36.000 0.00 0.00 34.58 4.02
2152 2236 7.402054 AGAATATGTGTGTTCATAAGGGTGAA 58.598 34.615 0.00 0.00 35.84 3.18
2153 2237 8.055181 AGAATATGTGTGTTCATAAGGGTGAAT 58.945 33.333 0.00 0.00 39.99 2.57
2154 2238 9.337396 GAATATGTGTGTTCATAAGGGTGAATA 57.663 33.333 0.00 0.00 39.99 1.75
2155 2239 8.908786 ATATGTGTGTTCATAAGGGTGAATAG 57.091 34.615 0.00 0.00 39.99 1.73
2156 2240 6.367374 TGTGTGTTCATAAGGGTGAATAGA 57.633 37.500 0.00 0.00 39.99 1.98
2157 2241 6.957631 TGTGTGTTCATAAGGGTGAATAGAT 58.042 36.000 0.00 0.00 39.99 1.98
2158 2242 7.047891 TGTGTGTTCATAAGGGTGAATAGATC 58.952 38.462 0.00 0.00 39.99 2.75
2159 2243 6.201044 GTGTGTTCATAAGGGTGAATAGATCG 59.799 42.308 0.00 0.00 39.99 3.69
2160 2244 6.127168 TGTGTTCATAAGGGTGAATAGATCGT 60.127 38.462 0.00 0.00 39.99 3.73
2161 2245 6.201044 GTGTTCATAAGGGTGAATAGATCGTG 59.799 42.308 0.00 0.00 39.99 4.35
2162 2246 6.097696 TGTTCATAAGGGTGAATAGATCGTGA 59.902 38.462 0.00 0.00 39.99 4.35
2163 2247 6.918067 TCATAAGGGTGAATAGATCGTGAT 57.082 37.500 0.00 0.00 0.00 3.06
2164 2248 6.691508 TCATAAGGGTGAATAGATCGTGATG 58.308 40.000 0.00 0.00 0.00 3.07
2165 2249 3.393089 AGGGTGAATAGATCGTGATGC 57.607 47.619 0.00 0.00 0.00 3.91
2166 2250 2.700371 AGGGTGAATAGATCGTGATGCA 59.300 45.455 0.00 0.00 0.00 3.96
2167 2251 3.326006 AGGGTGAATAGATCGTGATGCAT 59.674 43.478 0.00 0.00 0.00 3.96
2168 2252 3.434641 GGGTGAATAGATCGTGATGCATG 59.565 47.826 2.46 0.00 0.00 4.06
2169 2253 4.309933 GGTGAATAGATCGTGATGCATGA 58.690 43.478 2.46 0.00 33.71 3.07
2170 2254 4.388165 GGTGAATAGATCGTGATGCATGAG 59.612 45.833 2.46 0.00 32.64 2.90
2171 2255 4.388165 GTGAATAGATCGTGATGCATGAGG 59.612 45.833 2.46 0.34 32.64 3.86
2172 2256 3.606595 ATAGATCGTGATGCATGAGGG 57.393 47.619 2.46 0.00 32.64 4.30
2173 2257 1.126488 AGATCGTGATGCATGAGGGT 58.874 50.000 2.46 0.00 32.64 4.34
2174 2258 2.319844 AGATCGTGATGCATGAGGGTA 58.680 47.619 2.46 0.00 32.64 3.69
2175 2259 2.902486 AGATCGTGATGCATGAGGGTAT 59.098 45.455 2.46 0.00 32.64 2.73
2176 2260 2.531522 TCGTGATGCATGAGGGTATG 57.468 50.000 2.46 0.00 0.00 2.39
2189 2273 7.849804 CATGAGGGTATGCATTTATACTACC 57.150 40.000 3.54 3.99 34.65 3.18
2190 2274 7.624549 CATGAGGGTATGCATTTATACTACCT 58.375 38.462 3.54 0.00 34.65 3.08
2191 2275 7.004555 TGAGGGTATGCATTTATACTACCTG 57.995 40.000 3.54 0.00 34.65 4.00
2192 2276 6.557253 TGAGGGTATGCATTTATACTACCTGT 59.443 38.462 3.54 0.00 34.65 4.00
2193 2277 6.769512 AGGGTATGCATTTATACTACCTGTG 58.230 40.000 3.54 0.00 34.65 3.66
2194 2278 6.329197 AGGGTATGCATTTATACTACCTGTGT 59.671 38.462 3.54 0.00 34.65 3.72
2195 2279 6.996282 GGGTATGCATTTATACTACCTGTGTT 59.004 38.462 3.54 0.00 34.65 3.32
2196 2280 7.501225 GGGTATGCATTTATACTACCTGTGTTT 59.499 37.037 3.54 0.00 34.65 2.83
2197 2281 8.557029 GGTATGCATTTATACTACCTGTGTTTC 58.443 37.037 3.54 0.00 34.65 2.78
2198 2282 9.326413 GTATGCATTTATACTACCTGTGTTTCT 57.674 33.333 3.54 0.00 32.15 2.52
2200 2284 9.899661 ATGCATTTATACTACCTGTGTTTCTAA 57.100 29.630 0.00 0.00 0.00 2.10
2201 2285 9.727859 TGCATTTATACTACCTGTGTTTCTAAA 57.272 29.630 0.00 0.00 0.00 1.85
2224 2308 6.900568 AAAACAAATGTAATGTGGTGTGTG 57.099 33.333 0.00 0.00 35.22 3.82
2225 2309 5.590530 AACAAATGTAATGTGGTGTGTGT 57.409 34.783 0.00 0.00 35.22 3.72
2226 2310 5.590530 ACAAATGTAATGTGGTGTGTGTT 57.409 34.783 0.00 0.00 35.22 3.32
2227 2311 5.971763 ACAAATGTAATGTGGTGTGTGTTT 58.028 33.333 0.00 0.00 35.22 2.83
2228 2312 5.809562 ACAAATGTAATGTGGTGTGTGTTTG 59.190 36.000 0.00 0.00 35.22 2.93
2229 2313 5.843673 AATGTAATGTGGTGTGTGTTTGA 57.156 34.783 0.00 0.00 0.00 2.69
2230 2314 5.843673 ATGTAATGTGGTGTGTGTTTGAA 57.156 34.783 0.00 0.00 0.00 2.69
2231 2315 5.242069 TGTAATGTGGTGTGTGTTTGAAG 57.758 39.130 0.00 0.00 0.00 3.02
2232 2316 4.944317 TGTAATGTGGTGTGTGTTTGAAGA 59.056 37.500 0.00 0.00 0.00 2.87
2233 2317 4.637483 AATGTGGTGTGTGTTTGAAGAG 57.363 40.909 0.00 0.00 0.00 2.85
2234 2318 2.364632 TGTGGTGTGTGTTTGAAGAGG 58.635 47.619 0.00 0.00 0.00 3.69
2235 2319 2.026729 TGTGGTGTGTGTTTGAAGAGGA 60.027 45.455 0.00 0.00 0.00 3.71
2236 2320 2.354821 GTGGTGTGTGTTTGAAGAGGAC 59.645 50.000 0.00 0.00 0.00 3.85
2237 2321 2.026729 TGGTGTGTGTTTGAAGAGGACA 60.027 45.455 0.00 0.00 0.00 4.02
2238 2322 2.614057 GGTGTGTGTTTGAAGAGGACAG 59.386 50.000 0.00 0.00 0.00 3.51
2239 2323 3.531538 GTGTGTGTTTGAAGAGGACAGA 58.468 45.455 0.00 0.00 0.00 3.41
2240 2324 3.557595 GTGTGTGTTTGAAGAGGACAGAG 59.442 47.826 0.00 0.00 0.00 3.35
2241 2325 3.197766 TGTGTGTTTGAAGAGGACAGAGT 59.802 43.478 0.00 0.00 0.00 3.24
2242 2326 4.404394 TGTGTGTTTGAAGAGGACAGAGTA 59.596 41.667 0.00 0.00 0.00 2.59
2243 2327 5.070446 TGTGTGTTTGAAGAGGACAGAGTAT 59.930 40.000 0.00 0.00 0.00 2.12
2244 2328 6.266786 TGTGTGTTTGAAGAGGACAGAGTATA 59.733 38.462 0.00 0.00 0.00 1.47
2245 2329 7.152645 GTGTGTTTGAAGAGGACAGAGTATAA 58.847 38.462 0.00 0.00 0.00 0.98
2246 2330 7.656137 GTGTGTTTGAAGAGGACAGAGTATAAA 59.344 37.037 0.00 0.00 0.00 1.40
2247 2331 7.656137 TGTGTTTGAAGAGGACAGAGTATAAAC 59.344 37.037 0.00 0.00 0.00 2.01
2248 2332 7.656137 GTGTTTGAAGAGGACAGAGTATAAACA 59.344 37.037 0.00 0.00 33.51 2.83
2249 2333 8.208224 TGTTTGAAGAGGACAGAGTATAAACAA 58.792 33.333 0.00 0.00 33.14 2.83
2250 2334 9.052759 GTTTGAAGAGGACAGAGTATAAACAAA 57.947 33.333 0.00 0.00 0.00 2.83
2251 2335 8.833231 TTGAAGAGGACAGAGTATAAACAAAG 57.167 34.615 0.00 0.00 0.00 2.77
2252 2336 8.190326 TGAAGAGGACAGAGTATAAACAAAGA 57.810 34.615 0.00 0.00 0.00 2.52
2253 2337 8.816894 TGAAGAGGACAGAGTATAAACAAAGAT 58.183 33.333 0.00 0.00 0.00 2.40
2256 2340 9.482175 AGAGGACAGAGTATAAACAAAGATAGT 57.518 33.333 0.00 0.00 0.00 2.12
2285 2369 7.781548 TTCACTTACAAGTCAAGTAAAGACC 57.218 36.000 0.00 0.00 37.08 3.85
2286 2370 5.981315 TCACTTACAAGTCAAGTAAAGACCG 59.019 40.000 0.00 0.00 37.08 4.79
2287 2371 5.751990 CACTTACAAGTCAAGTAAAGACCGT 59.248 40.000 0.00 0.00 37.08 4.83
2288 2372 6.919662 CACTTACAAGTCAAGTAAAGACCGTA 59.080 38.462 0.00 0.00 37.08 4.02
2289 2373 7.597743 CACTTACAAGTCAAGTAAAGACCGTAT 59.402 37.037 0.00 0.00 37.08 3.06
2290 2374 8.146412 ACTTACAAGTCAAGTAAAGACCGTATT 58.854 33.333 0.00 0.00 34.50 1.89
2291 2375 8.524870 TTACAAGTCAAGTAAAGACCGTATTC 57.475 34.615 0.00 0.00 36.68 1.75
2292 2376 5.930569 ACAAGTCAAGTAAAGACCGTATTCC 59.069 40.000 0.00 0.00 36.68 3.01
2293 2377 5.997384 AGTCAAGTAAAGACCGTATTCCT 57.003 39.130 0.00 0.00 36.68 3.36
2294 2378 6.356186 AGTCAAGTAAAGACCGTATTCCTT 57.644 37.500 0.00 0.00 36.68 3.36
2295 2379 6.164176 AGTCAAGTAAAGACCGTATTCCTTG 58.836 40.000 10.05 10.05 36.68 3.61
2296 2380 5.930569 GTCAAGTAAAGACCGTATTCCTTGT 59.069 40.000 13.59 0.00 32.13 3.16
2297 2381 5.929992 TCAAGTAAAGACCGTATTCCTTGTG 59.070 40.000 13.59 0.00 32.13 3.33
2298 2382 5.479124 AGTAAAGACCGTATTCCTTGTGT 57.521 39.130 0.00 0.00 0.00 3.72
2299 2383 6.594788 AGTAAAGACCGTATTCCTTGTGTA 57.405 37.500 0.00 0.00 0.00 2.90
2300 2384 6.393171 AGTAAAGACCGTATTCCTTGTGTAC 58.607 40.000 0.00 0.00 0.00 2.90
2301 2385 4.877378 AAGACCGTATTCCTTGTGTACA 57.123 40.909 0.00 0.00 0.00 2.90
2302 2386 4.877378 AGACCGTATTCCTTGTGTACAA 57.123 40.909 0.00 0.00 0.00 2.41
2318 2402 7.848223 TGTGTACAAGATAGGATCACAAATG 57.152 36.000 0.00 0.00 32.66 2.32
2319 2403 7.619965 TGTGTACAAGATAGGATCACAAATGA 58.380 34.615 0.00 0.00 39.83 2.57
2321 2405 9.764363 GTGTACAAGATAGGATCACAAATGATA 57.236 33.333 0.00 0.00 46.01 2.15
2325 2409 9.941325 ACAAGATAGGATCACAAATGATATCTC 57.059 33.333 3.98 0.00 46.01 2.75
2354 2438 1.302993 GAACCGGGCTTTAGCACCA 60.303 57.895 6.32 0.00 42.67 4.17
2364 2448 3.323243 GCTTTAGCACCAGTTCGTAAGA 58.677 45.455 0.00 0.00 43.27 2.10
2991 3184 4.134563 AGCGTTCATAAGACCACAAAAGT 58.865 39.130 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 48 3.861276 TGCCTGAGAATTTGCATGAAG 57.139 42.857 0.00 0.00 0.00 3.02
62 65 7.227512 ACATACAAGCACTCTTCTTATTATGCC 59.772 37.037 0.00 0.00 33.50 4.40
71 74 5.807520 CGTTATCACATACAAGCACTCTTCT 59.192 40.000 0.00 0.00 0.00 2.85
72 75 5.500931 GCGTTATCACATACAAGCACTCTTC 60.501 44.000 0.00 0.00 0.00 2.87
90 93 5.940470 AGAAATGTTCTTTGAGAGGCGTTAT 59.060 36.000 0.00 0.00 36.36 1.89
126 129 3.067742 TCGTTTCTTCTCCGAGTGAAGTT 59.932 43.478 12.36 0.00 41.04 2.66
150 153 8.673711 GCACACATGTATTAACTTGATTTCCTA 58.326 33.333 0.00 0.00 35.35 2.94
151 154 7.176515 TGCACACATGTATTAACTTGATTTCCT 59.823 33.333 0.00 0.00 35.35 3.36
172 175 7.824704 AAAATATGTTAATTTCGCATGCACA 57.175 28.000 19.57 12.73 0.00 4.57
259 262 4.090066 GTGAGAGCGTACACAAGTATGTTG 59.910 45.833 0.00 0.00 37.82 3.33
260 263 4.022242 AGTGAGAGCGTACACAAGTATGTT 60.022 41.667 11.32 0.00 37.82 2.71
273 276 4.273148 AGACCAAATTAAGTGAGAGCGT 57.727 40.909 0.00 0.00 0.00 5.07
274 277 4.201628 CGAAGACCAAATTAAGTGAGAGCG 60.202 45.833 0.00 0.00 0.00 5.03
323 327 6.655425 AGCCAGTCCTTTATAAGAGTGTTTTC 59.345 38.462 8.12 0.00 0.00 2.29
336 340 1.079825 TGACCCCTAGCCAGTCCTTTA 59.920 52.381 3.47 0.00 0.00 1.85
359 364 2.999355 GGCACAAAACTGTTTTCAAGCA 59.001 40.909 23.41 0.00 0.00 3.91
364 369 3.245048 CGATTGGGCACAAAACTGTTTTC 59.755 43.478 15.17 5.26 40.55 2.29
394 399 9.979270 CTTGTTGCAATAGTTTAGATAGAACAG 57.021 33.333 0.59 0.00 0.00 3.16
409 414 7.649533 AGATCCATTGAATCTTGTTGCAATA 57.350 32.000 0.59 0.00 30.45 1.90
410 415 6.540438 AGATCCATTGAATCTTGTTGCAAT 57.460 33.333 0.59 0.00 0.00 3.56
423 428 1.278985 AGACGGTGCAAGATCCATTGA 59.721 47.619 0.00 0.00 31.55 2.57
459 464 2.554032 AGGAAAAGAGGAACAACGCATG 59.446 45.455 0.00 0.00 0.00 4.06
464 469 5.576447 TGTCAAAGGAAAAGAGGAACAAC 57.424 39.130 0.00 0.00 0.00 3.32
481 487 3.820595 CTGGATCGACAGCTGTCAA 57.179 52.632 38.31 27.18 44.99 3.18
525 531 1.270826 GAGTGTAGCTGACTGCAGACA 59.729 52.381 23.35 20.19 45.17 3.41
528 534 1.467204 CGAGAGTGTAGCTGACTGCAG 60.467 57.143 13.48 13.48 45.94 4.41
532 538 1.068194 GTTGCGAGAGTGTAGCTGACT 60.068 52.381 0.00 0.00 0.00 3.41
536 542 0.038159 GTGGTTGCGAGAGTGTAGCT 60.038 55.000 0.00 0.00 0.00 3.32
548 554 2.597510 GGGTGGTGAGGTGGTTGC 60.598 66.667 0.00 0.00 0.00 4.17
550 556 1.696314 ACTGGGTGGTGAGGTGGTT 60.696 57.895 0.00 0.00 0.00 3.67
571 577 1.522569 GTGAGGGAAGTCGATGGGG 59.477 63.158 0.00 0.00 0.00 4.96
614 620 1.860641 TCGCTGGTTTAGAGGGATGA 58.139 50.000 0.00 0.00 0.00 2.92
647 653 2.038975 CGGGGTGAGAGGAAGGGA 59.961 66.667 0.00 0.00 0.00 4.20
651 657 2.280552 CGGTTCGGGGTGAGAGGAA 61.281 63.158 0.00 0.00 0.00 3.36
655 661 1.812686 CTTGACGGTTCGGGGTGAGA 61.813 60.000 0.00 0.00 0.00 3.27
656 662 1.374252 CTTGACGGTTCGGGGTGAG 60.374 63.158 0.00 0.00 0.00 3.51
699 705 1.078214 CTCGGCCAAGAATGAGCCA 60.078 57.895 2.24 0.00 40.74 4.75
733 739 0.321671 TTGGGTGAGAAGGAAGCTCG 59.678 55.000 0.00 0.00 35.15 5.03
735 741 2.376518 TCAATTGGGTGAGAAGGAAGCT 59.623 45.455 5.42 0.00 0.00 3.74
777 784 9.298774 ACGTAGTCATTTATAAGACAGTTTAGC 57.701 33.333 7.40 0.00 29.74 3.09
806 833 6.129115 CGCTAGCTAACTACTAGAAGACGTAG 60.129 46.154 13.93 0.00 39.64 3.51
807 834 5.689514 CGCTAGCTAACTACTAGAAGACGTA 59.310 44.000 13.93 0.00 39.64 3.57
808 835 4.507388 CGCTAGCTAACTACTAGAAGACGT 59.493 45.833 13.93 0.00 39.64 4.34
809 836 4.744137 TCGCTAGCTAACTACTAGAAGACG 59.256 45.833 13.93 0.00 39.64 4.18
810 837 5.523188 TGTCGCTAGCTAACTACTAGAAGAC 59.477 44.000 13.93 8.22 41.76 3.01
811 838 5.668471 TGTCGCTAGCTAACTACTAGAAGA 58.332 41.667 13.93 0.00 39.64 2.87
812 839 5.987777 TGTCGCTAGCTAACTACTAGAAG 57.012 43.478 13.93 0.00 39.64 2.85
813 840 6.373774 AGTTTGTCGCTAGCTAACTACTAGAA 59.626 38.462 13.93 0.00 39.64 2.10
814 841 5.879223 AGTTTGTCGCTAGCTAACTACTAGA 59.121 40.000 13.93 0.00 39.64 2.43
815 842 6.121613 AGTTTGTCGCTAGCTAACTACTAG 57.878 41.667 13.93 0.00 40.13 2.57
816 843 6.404074 GGAAGTTTGTCGCTAGCTAACTACTA 60.404 42.308 13.93 0.00 33.13 1.82
817 844 5.388408 AAGTTTGTCGCTAGCTAACTACT 57.612 39.130 13.93 14.01 33.13 2.57
891 921 1.326548 CGTTAAAGGTGTAGATGCCGC 59.673 52.381 0.00 0.00 0.00 6.53
937 967 1.065401 AGTTGTGACACATTTGCGGTG 59.935 47.619 9.55 0.00 41.95 4.94
982 1014 0.611714 GTGGGAAGTTAGCGAAGGGA 59.388 55.000 0.00 0.00 0.00 4.20
994 1026 1.273606 TGAAGAGCTCGAAGTGGGAAG 59.726 52.381 8.37 0.00 0.00 3.46
1063 1101 3.709633 GAAAGGGGCGTACGGGGT 61.710 66.667 18.39 0.00 0.00 4.95
1127 1165 2.232298 GAGCTCGAAGACCTGGTGGG 62.232 65.000 2.82 0.00 41.89 4.61
1624 1701 4.802051 CCCCACCATCCGCACCTG 62.802 72.222 0.00 0.00 0.00 4.00
1803 1883 2.753043 TCGTCGTCCTGTAGGGCC 60.753 66.667 0.00 0.00 36.14 5.80
1872 1952 1.270358 GGCTTTAGGCAGCGCTACTAT 60.270 52.381 10.99 0.00 44.01 2.12
1883 1963 0.533978 GCTGCTCTAGGGCTTTAGGC 60.534 60.000 17.26 8.53 40.90 3.93
1962 2042 6.185114 AGAATAGCAGGACAGCAGATAAAT 57.815 37.500 0.00 0.00 36.85 1.40
2002 2086 9.423427 CTAGTATTAGTATGAATACATCGTCGC 57.577 37.037 8.55 0.00 42.41 5.19
2009 2093 8.911018 ATGGGGCTAGTATTAGTATGAATACA 57.089 34.615 8.55 0.00 42.41 2.29
2012 2096 9.562226 AACTATGGGGCTAGTATTAGTATGAAT 57.438 33.333 0.00 0.00 31.70 2.57
2013 2097 8.967779 AACTATGGGGCTAGTATTAGTATGAA 57.032 34.615 0.00 0.00 31.70 2.57
2017 2101 9.471702 GTGATAACTATGGGGCTAGTATTAGTA 57.528 37.037 0.00 0.00 31.70 1.82
2018 2102 7.122353 CGTGATAACTATGGGGCTAGTATTAGT 59.878 40.741 0.00 0.00 31.70 2.24
2019 2103 7.416438 CCGTGATAACTATGGGGCTAGTATTAG 60.416 44.444 0.00 0.00 31.70 1.73
2020 2104 6.379133 CCGTGATAACTATGGGGCTAGTATTA 59.621 42.308 0.00 0.00 31.70 0.98
2021 2105 5.187186 CCGTGATAACTATGGGGCTAGTATT 59.813 44.000 0.00 0.00 31.70 1.89
2022 2106 4.710375 CCGTGATAACTATGGGGCTAGTAT 59.290 45.833 0.00 0.00 31.70 2.12
2023 2107 4.084287 CCGTGATAACTATGGGGCTAGTA 58.916 47.826 0.00 0.00 31.70 1.82
2024 2108 2.897969 CCGTGATAACTATGGGGCTAGT 59.102 50.000 0.00 0.00 33.34 2.57
2025 2109 3.162666 TCCGTGATAACTATGGGGCTAG 58.837 50.000 0.00 0.00 0.00 3.42
2026 2110 3.247948 TCCGTGATAACTATGGGGCTA 57.752 47.619 0.00 0.00 0.00 3.93
2027 2111 2.097110 TCCGTGATAACTATGGGGCT 57.903 50.000 0.00 0.00 0.00 5.19
2028 2112 2.922740 TTCCGTGATAACTATGGGGC 57.077 50.000 0.00 0.00 0.00 5.80
2029 2113 5.348986 CGATATTCCGTGATAACTATGGGG 58.651 45.833 0.00 0.00 0.00 4.96
2030 2114 4.804139 GCGATATTCCGTGATAACTATGGG 59.196 45.833 0.00 0.00 0.00 4.00
2031 2115 5.516696 CAGCGATATTCCGTGATAACTATGG 59.483 44.000 0.00 0.00 0.00 2.74
2032 2116 6.322491 TCAGCGATATTCCGTGATAACTATG 58.678 40.000 0.00 0.00 0.00 2.23
2033 2117 6.510879 TCAGCGATATTCCGTGATAACTAT 57.489 37.500 0.00 0.00 0.00 2.12
2034 2118 5.952526 TCAGCGATATTCCGTGATAACTA 57.047 39.130 0.00 0.00 0.00 2.24
2035 2119 4.848562 TCAGCGATATTCCGTGATAACT 57.151 40.909 0.00 0.00 0.00 2.24
2036 2120 4.143597 CGTTCAGCGATATTCCGTGATAAC 60.144 45.833 0.00 0.00 44.77 1.89
2037 2121 3.978855 CGTTCAGCGATATTCCGTGATAA 59.021 43.478 0.00 0.00 44.77 1.75
2038 2122 3.251487 TCGTTCAGCGATATTCCGTGATA 59.749 43.478 0.00 0.00 45.68 2.15
2039 2123 2.034179 TCGTTCAGCGATATTCCGTGAT 59.966 45.455 0.00 0.00 45.68 3.06
2040 2124 1.402613 TCGTTCAGCGATATTCCGTGA 59.597 47.619 0.00 0.00 45.68 4.35
2041 2125 1.835121 TCGTTCAGCGATATTCCGTG 58.165 50.000 0.00 0.00 45.68 4.94
2053 2137 3.305398 AACAACTAGAGGCTCGTTCAG 57.695 47.619 9.22 7.77 0.00 3.02
2054 2138 3.192844 CCTAACAACTAGAGGCTCGTTCA 59.807 47.826 9.22 0.00 0.00 3.18
2055 2139 3.193056 ACCTAACAACTAGAGGCTCGTTC 59.807 47.826 9.22 0.00 33.28 3.95
2056 2140 3.056749 CACCTAACAACTAGAGGCTCGTT 60.057 47.826 9.22 9.21 33.28 3.85
2057 2141 2.492484 CACCTAACAACTAGAGGCTCGT 59.508 50.000 9.22 0.00 33.28 4.18
2058 2142 2.753452 TCACCTAACAACTAGAGGCTCG 59.247 50.000 9.22 0.00 33.28 5.03
2059 2143 5.346181 AATCACCTAACAACTAGAGGCTC 57.654 43.478 6.34 6.34 33.28 4.70
2060 2144 5.624738 CGAAATCACCTAACAACTAGAGGCT 60.625 44.000 0.00 0.00 33.28 4.58
2061 2145 4.567159 CGAAATCACCTAACAACTAGAGGC 59.433 45.833 0.00 0.00 33.28 4.70
2062 2146 5.721232 ACGAAATCACCTAACAACTAGAGG 58.279 41.667 0.00 0.00 36.36 3.69
2063 2147 6.387465 TGACGAAATCACCTAACAACTAGAG 58.613 40.000 0.00 0.00 29.99 2.43
2064 2148 6.335471 TGACGAAATCACCTAACAACTAGA 57.665 37.500 0.00 0.00 29.99 2.43
2065 2149 7.545965 AGATTGACGAAATCACCTAACAACTAG 59.454 37.037 14.85 0.00 46.21 2.57
2066 2150 7.383687 AGATTGACGAAATCACCTAACAACTA 58.616 34.615 14.85 0.00 46.21 2.24
2067 2151 6.231211 AGATTGACGAAATCACCTAACAACT 58.769 36.000 14.85 0.00 46.21 3.16
2068 2152 6.147164 TGAGATTGACGAAATCACCTAACAAC 59.853 38.462 14.85 0.00 46.21 3.32
2069 2153 6.227522 TGAGATTGACGAAATCACCTAACAA 58.772 36.000 14.85 0.00 46.21 2.83
2070 2154 5.789521 TGAGATTGACGAAATCACCTAACA 58.210 37.500 14.85 5.57 46.21 2.41
2071 2155 6.590292 TCTTGAGATTGACGAAATCACCTAAC 59.410 38.462 14.85 3.83 46.21 2.34
2072 2156 6.590292 GTCTTGAGATTGACGAAATCACCTAA 59.410 38.462 14.85 6.24 46.21 2.69
2073 2157 6.071334 AGTCTTGAGATTGACGAAATCACCTA 60.071 38.462 14.85 5.69 46.21 3.08
2074 2158 4.932200 GTCTTGAGATTGACGAAATCACCT 59.068 41.667 14.85 0.00 46.21 4.00
2075 2159 4.932200 AGTCTTGAGATTGACGAAATCACC 59.068 41.667 14.85 8.64 46.21 4.02
2076 2160 6.473397 AAGTCTTGAGATTGACGAAATCAC 57.527 37.500 14.85 10.52 46.21 3.06
2077 2161 7.220875 CGATAAGTCTTGAGATTGACGAAATCA 59.779 37.037 14.85 0.00 46.21 2.57
2078 2162 7.432545 TCGATAAGTCTTGAGATTGACGAAATC 59.567 37.037 0.00 7.29 44.44 2.17
2079 2163 7.258441 TCGATAAGTCTTGAGATTGACGAAAT 58.742 34.615 0.00 0.00 38.16 2.17
2080 2164 6.617879 TCGATAAGTCTTGAGATTGACGAAA 58.382 36.000 0.00 0.00 38.16 3.46
2081 2165 6.190954 TCGATAAGTCTTGAGATTGACGAA 57.809 37.500 0.00 0.00 38.16 3.85
2082 2166 5.730847 GCTCGATAAGTCTTGAGATTGACGA 60.731 44.000 0.00 0.00 38.16 4.20
2083 2167 4.439449 GCTCGATAAGTCTTGAGATTGACG 59.561 45.833 0.00 0.00 38.16 4.35
2084 2168 5.344066 TGCTCGATAAGTCTTGAGATTGAC 58.656 41.667 0.00 0.00 0.00 3.18
2085 2169 5.582689 TGCTCGATAAGTCTTGAGATTGA 57.417 39.130 0.00 0.00 0.00 2.57
2086 2170 6.841443 ATTGCTCGATAAGTCTTGAGATTG 57.159 37.500 0.00 0.00 0.00 2.67
2087 2171 6.926272 GGTATTGCTCGATAAGTCTTGAGATT 59.074 38.462 0.00 0.00 0.00 2.40
2088 2172 6.266558 AGGTATTGCTCGATAAGTCTTGAGAT 59.733 38.462 0.00 0.00 0.00 2.75
2089 2173 5.594725 AGGTATTGCTCGATAAGTCTTGAGA 59.405 40.000 0.00 0.00 0.00 3.27
2090 2174 5.837437 AGGTATTGCTCGATAAGTCTTGAG 58.163 41.667 0.00 0.00 0.00 3.02
2091 2175 5.359860 TGAGGTATTGCTCGATAAGTCTTGA 59.640 40.000 0.00 0.00 0.00 3.02
2092 2176 5.592054 TGAGGTATTGCTCGATAAGTCTTG 58.408 41.667 0.00 0.00 0.00 3.02
2093 2177 5.854010 TGAGGTATTGCTCGATAAGTCTT 57.146 39.130 0.00 0.00 0.00 3.01
2094 2178 5.854010 TTGAGGTATTGCTCGATAAGTCT 57.146 39.130 0.00 0.00 0.00 3.24
2095 2179 8.651588 CATATTTGAGGTATTGCTCGATAAGTC 58.348 37.037 0.00 0.00 0.00 3.01
2096 2180 8.150945 ACATATTTGAGGTATTGCTCGATAAGT 58.849 33.333 0.00 0.00 0.00 2.24
2097 2181 8.539770 ACATATTTGAGGTATTGCTCGATAAG 57.460 34.615 0.00 0.00 0.00 1.73
2098 2182 8.902540 AACATATTTGAGGTATTGCTCGATAA 57.097 30.769 0.00 0.00 0.00 1.75
2099 2183 7.328493 CGAACATATTTGAGGTATTGCTCGATA 59.672 37.037 0.00 0.00 0.00 2.92
2100 2184 6.146184 CGAACATATTTGAGGTATTGCTCGAT 59.854 38.462 0.00 0.00 0.00 3.59
2101 2185 5.462068 CGAACATATTTGAGGTATTGCTCGA 59.538 40.000 0.00 0.00 0.00 4.04
2102 2186 5.234329 ACGAACATATTTGAGGTATTGCTCG 59.766 40.000 0.00 0.00 0.00 5.03
2103 2187 6.604735 ACGAACATATTTGAGGTATTGCTC 57.395 37.500 0.00 0.00 0.00 4.26
2104 2188 7.497595 TCTACGAACATATTTGAGGTATTGCT 58.502 34.615 0.00 0.00 0.00 3.91
2105 2189 7.709269 TCTACGAACATATTTGAGGTATTGC 57.291 36.000 0.00 0.00 0.00 3.56
2110 2194 9.261180 CACATATTCTACGAACATATTTGAGGT 57.739 33.333 0.00 0.00 0.00 3.85
2111 2195 9.261180 ACACATATTCTACGAACATATTTGAGG 57.739 33.333 0.00 0.00 0.00 3.86
2113 2197 9.594478 ACACACATATTCTACGAACATATTTGA 57.406 29.630 0.00 0.00 0.00 2.69
2116 2200 9.594478 TGAACACACATATTCTACGAACATATT 57.406 29.630 0.00 0.00 0.00 1.28
2117 2201 9.764363 ATGAACACACATATTCTACGAACATAT 57.236 29.630 0.00 0.00 0.00 1.78
2119 2203 9.594478 TTATGAACACACATATTCTACGAACAT 57.406 29.630 0.00 0.00 33.60 2.71
2120 2204 8.989653 TTATGAACACACATATTCTACGAACA 57.010 30.769 0.00 0.00 33.60 3.18
2121 2205 8.540492 CCTTATGAACACACATATTCTACGAAC 58.460 37.037 0.00 0.00 33.60 3.95
2122 2206 7.709182 CCCTTATGAACACACATATTCTACGAA 59.291 37.037 0.00 0.00 33.60 3.85
2123 2207 7.147794 ACCCTTATGAACACACATATTCTACGA 60.148 37.037 0.00 0.00 33.60 3.43
2124 2208 6.984474 ACCCTTATGAACACACATATTCTACG 59.016 38.462 0.00 0.00 33.60 3.51
2125 2209 7.985184 TCACCCTTATGAACACACATATTCTAC 59.015 37.037 0.00 0.00 33.60 2.59
2126 2210 8.084985 TCACCCTTATGAACACACATATTCTA 57.915 34.615 0.00 0.00 33.60 2.10
2127 2211 6.957631 TCACCCTTATGAACACACATATTCT 58.042 36.000 0.00 0.00 33.60 2.40
2128 2212 7.624360 TTCACCCTTATGAACACACATATTC 57.376 36.000 0.00 0.00 33.62 1.75
2129 2213 9.342308 CTATTCACCCTTATGAACACACATATT 57.658 33.333 0.00 0.00 41.29 1.28
2130 2214 8.713971 TCTATTCACCCTTATGAACACACATAT 58.286 33.333 0.00 0.00 41.29 1.78
2131 2215 8.084985 TCTATTCACCCTTATGAACACACATA 57.915 34.615 0.00 0.00 41.29 2.29
2132 2216 6.957631 TCTATTCACCCTTATGAACACACAT 58.042 36.000 0.00 0.00 41.29 3.21
2133 2217 6.367374 TCTATTCACCCTTATGAACACACA 57.633 37.500 0.00 0.00 41.29 3.72
2134 2218 6.201044 CGATCTATTCACCCTTATGAACACAC 59.799 42.308 0.00 0.00 41.29 3.82
2135 2219 6.127168 ACGATCTATTCACCCTTATGAACACA 60.127 38.462 0.00 0.00 41.29 3.72
2136 2220 6.201044 CACGATCTATTCACCCTTATGAACAC 59.799 42.308 0.00 0.00 41.29 3.32
2137 2221 6.097696 TCACGATCTATTCACCCTTATGAACA 59.902 38.462 0.00 0.00 41.29 3.18
2138 2222 6.513180 TCACGATCTATTCACCCTTATGAAC 58.487 40.000 0.00 0.00 41.29 3.18
2139 2223 6.724893 TCACGATCTATTCACCCTTATGAA 57.275 37.500 0.00 0.00 42.62 2.57
2140 2224 6.691508 CATCACGATCTATTCACCCTTATGA 58.308 40.000 0.00 0.00 0.00 2.15
2141 2225 5.349817 GCATCACGATCTATTCACCCTTATG 59.650 44.000 0.00 0.00 0.00 1.90
2142 2226 5.012046 TGCATCACGATCTATTCACCCTTAT 59.988 40.000 0.00 0.00 0.00 1.73
2143 2227 4.343814 TGCATCACGATCTATTCACCCTTA 59.656 41.667 0.00 0.00 0.00 2.69
2144 2228 3.134623 TGCATCACGATCTATTCACCCTT 59.865 43.478 0.00 0.00 0.00 3.95
2145 2229 2.700371 TGCATCACGATCTATTCACCCT 59.300 45.455 0.00 0.00 0.00 4.34
2146 2230 3.111853 TGCATCACGATCTATTCACCC 57.888 47.619 0.00 0.00 0.00 4.61
2147 2231 4.309933 TCATGCATCACGATCTATTCACC 58.690 43.478 0.00 0.00 0.00 4.02
2148 2232 4.388165 CCTCATGCATCACGATCTATTCAC 59.612 45.833 0.00 0.00 0.00 3.18
2149 2233 4.562143 CCCTCATGCATCACGATCTATTCA 60.562 45.833 0.00 0.00 0.00 2.57
2150 2234 3.931468 CCCTCATGCATCACGATCTATTC 59.069 47.826 0.00 0.00 0.00 1.75
2151 2235 3.326006 ACCCTCATGCATCACGATCTATT 59.674 43.478 0.00 0.00 0.00 1.73
2152 2236 2.902486 ACCCTCATGCATCACGATCTAT 59.098 45.455 0.00 0.00 0.00 1.98
2153 2237 2.319844 ACCCTCATGCATCACGATCTA 58.680 47.619 0.00 0.00 0.00 1.98
2154 2238 1.126488 ACCCTCATGCATCACGATCT 58.874 50.000 0.00 0.00 0.00 2.75
2155 2239 2.820059 TACCCTCATGCATCACGATC 57.180 50.000 0.00 0.00 0.00 3.69
2156 2240 3.049708 CATACCCTCATGCATCACGAT 57.950 47.619 0.00 0.00 0.00 3.73
2157 2241 2.531522 CATACCCTCATGCATCACGA 57.468 50.000 0.00 0.00 0.00 4.35
2165 2249 7.550551 CAGGTAGTATAAATGCATACCCTCATG 59.449 40.741 0.00 0.00 37.24 3.07
2166 2250 7.237679 ACAGGTAGTATAAATGCATACCCTCAT 59.762 37.037 0.00 0.00 37.24 2.90
2167 2251 6.557253 ACAGGTAGTATAAATGCATACCCTCA 59.443 38.462 0.00 0.00 37.24 3.86
2168 2252 6.874134 CACAGGTAGTATAAATGCATACCCTC 59.126 42.308 0.00 0.00 37.24 4.30
2169 2253 6.329197 ACACAGGTAGTATAAATGCATACCCT 59.671 38.462 0.00 0.00 37.24 4.34
2170 2254 6.531021 ACACAGGTAGTATAAATGCATACCC 58.469 40.000 0.00 0.00 37.24 3.69
2171 2255 8.446599 AAACACAGGTAGTATAAATGCATACC 57.553 34.615 0.00 1.41 36.87 2.73
2172 2256 9.326413 AGAAACACAGGTAGTATAAATGCATAC 57.674 33.333 0.00 0.00 0.00 2.39
2174 2258 9.899661 TTAGAAACACAGGTAGTATAAATGCAT 57.100 29.630 0.00 0.00 0.00 3.96
2175 2259 9.727859 TTTAGAAACACAGGTAGTATAAATGCA 57.272 29.630 0.00 0.00 0.00 3.96
2200 2284 6.876257 ACACACACCACATTACATTTGTTTTT 59.124 30.769 0.00 0.00 0.00 1.94
2201 2285 6.402222 ACACACACCACATTACATTTGTTTT 58.598 32.000 0.00 0.00 0.00 2.43
2202 2286 5.971763 ACACACACCACATTACATTTGTTT 58.028 33.333 0.00 0.00 0.00 2.83
2203 2287 5.590530 ACACACACCACATTACATTTGTT 57.409 34.783 0.00 0.00 0.00 2.83
2204 2288 5.590530 AACACACACCACATTACATTTGT 57.409 34.783 0.00 0.00 0.00 2.83
2205 2289 6.038985 TCAAACACACACCACATTACATTTG 58.961 36.000 0.00 0.00 0.00 2.32
2206 2290 6.214191 TCAAACACACACCACATTACATTT 57.786 33.333 0.00 0.00 0.00 2.32
2207 2291 5.843673 TCAAACACACACCACATTACATT 57.156 34.783 0.00 0.00 0.00 2.71
2208 2292 5.592282 TCTTCAAACACACACCACATTACAT 59.408 36.000 0.00 0.00 0.00 2.29
2209 2293 4.944317 TCTTCAAACACACACCACATTACA 59.056 37.500 0.00 0.00 0.00 2.41
2210 2294 5.493133 TCTTCAAACACACACCACATTAC 57.507 39.130 0.00 0.00 0.00 1.89
2211 2295 4.578516 CCTCTTCAAACACACACCACATTA 59.421 41.667 0.00 0.00 0.00 1.90
2212 2296 3.381272 CCTCTTCAAACACACACCACATT 59.619 43.478 0.00 0.00 0.00 2.71
2213 2297 2.951642 CCTCTTCAAACACACACCACAT 59.048 45.455 0.00 0.00 0.00 3.21
2214 2298 2.026729 TCCTCTTCAAACACACACCACA 60.027 45.455 0.00 0.00 0.00 4.17
2215 2299 2.354821 GTCCTCTTCAAACACACACCAC 59.645 50.000 0.00 0.00 0.00 4.16
2216 2300 2.026729 TGTCCTCTTCAAACACACACCA 60.027 45.455 0.00 0.00 0.00 4.17
2217 2301 2.614057 CTGTCCTCTTCAAACACACACC 59.386 50.000 0.00 0.00 0.00 4.16
2218 2302 3.531538 TCTGTCCTCTTCAAACACACAC 58.468 45.455 0.00 0.00 0.00 3.82
2219 2303 3.197766 ACTCTGTCCTCTTCAAACACACA 59.802 43.478 0.00 0.00 0.00 3.72
2220 2304 3.798202 ACTCTGTCCTCTTCAAACACAC 58.202 45.455 0.00 0.00 0.00 3.82
2221 2305 5.808366 ATACTCTGTCCTCTTCAAACACA 57.192 39.130 0.00 0.00 0.00 3.72
2222 2306 7.656137 TGTTTATACTCTGTCCTCTTCAAACAC 59.344 37.037 0.00 0.00 29.87 3.32
2223 2307 7.732025 TGTTTATACTCTGTCCTCTTCAAACA 58.268 34.615 0.00 0.00 31.75 2.83
2224 2308 8.603242 TTGTTTATACTCTGTCCTCTTCAAAC 57.397 34.615 0.00 0.00 0.00 2.93
2225 2309 9.273016 CTTTGTTTATACTCTGTCCTCTTCAAA 57.727 33.333 0.00 0.00 0.00 2.69
2226 2310 8.647796 TCTTTGTTTATACTCTGTCCTCTTCAA 58.352 33.333 0.00 0.00 0.00 2.69
2227 2311 8.190326 TCTTTGTTTATACTCTGTCCTCTTCA 57.810 34.615 0.00 0.00 0.00 3.02
2230 2314 9.482175 ACTATCTTTGTTTATACTCTGTCCTCT 57.518 33.333 0.00 0.00 0.00 3.69
2259 2343 9.485206 GGTCTTTACTTGACTTGTAAGTGAATA 57.515 33.333 1.35 0.00 39.88 1.75
2260 2344 7.170998 CGGTCTTTACTTGACTTGTAAGTGAAT 59.829 37.037 1.35 0.00 39.88 2.57
2261 2345 6.477688 CGGTCTTTACTTGACTTGTAAGTGAA 59.522 38.462 1.35 0.00 39.88 3.18
2262 2346 5.981315 CGGTCTTTACTTGACTTGTAAGTGA 59.019 40.000 1.35 0.00 39.88 3.41
2263 2347 5.751990 ACGGTCTTTACTTGACTTGTAAGTG 59.248 40.000 1.35 0.00 39.88 3.16
2264 2348 5.910614 ACGGTCTTTACTTGACTTGTAAGT 58.089 37.500 0.00 0.00 43.16 2.24
2265 2349 8.530269 AATACGGTCTTTACTTGACTTGTAAG 57.470 34.615 0.00 0.00 33.13 2.34
2266 2350 7.599998 GGAATACGGTCTTTACTTGACTTGTAA 59.400 37.037 0.00 0.00 33.13 2.41
2267 2351 7.039504 AGGAATACGGTCTTTACTTGACTTGTA 60.040 37.037 0.00 0.00 35.04 2.41
2268 2352 5.930569 GGAATACGGTCTTTACTTGACTTGT 59.069 40.000 0.00 0.00 35.04 3.16
2269 2353 6.164176 AGGAATACGGTCTTTACTTGACTTG 58.836 40.000 0.00 0.00 35.04 3.16
2270 2354 6.356186 AGGAATACGGTCTTTACTTGACTT 57.644 37.500 0.00 0.00 35.04 3.01
2271 2355 5.997384 AGGAATACGGTCTTTACTTGACT 57.003 39.130 0.00 0.00 35.04 3.41
2272 2356 5.930569 ACAAGGAATACGGTCTTTACTTGAC 59.069 40.000 24.41 0.00 37.92 3.18
2273 2357 5.929992 CACAAGGAATACGGTCTTTACTTGA 59.070 40.000 24.41 0.00 37.92 3.02
2274 2358 5.699458 ACACAAGGAATACGGTCTTTACTTG 59.301 40.000 19.44 19.44 39.76 3.16
2275 2359 5.861727 ACACAAGGAATACGGTCTTTACTT 58.138 37.500 0.00 0.00 0.00 2.24
2276 2360 5.479124 ACACAAGGAATACGGTCTTTACT 57.521 39.130 0.00 0.00 0.00 2.24
2277 2361 6.158598 TGTACACAAGGAATACGGTCTTTAC 58.841 40.000 0.00 0.00 0.00 2.01
2278 2362 6.343716 TGTACACAAGGAATACGGTCTTTA 57.656 37.500 0.00 0.00 0.00 1.85
2279 2363 5.217978 TGTACACAAGGAATACGGTCTTT 57.782 39.130 0.00 0.00 0.00 2.52
2280 2364 4.877378 TGTACACAAGGAATACGGTCTT 57.123 40.909 0.00 0.00 0.00 3.01
2281 2365 4.877378 TTGTACACAAGGAATACGGTCT 57.123 40.909 0.00 0.00 0.00 3.85
2293 2377 8.100164 TCATTTGTGATCCTATCTTGTACACAA 58.900 33.333 0.00 0.00 42.27 3.33
2294 2378 7.619965 TCATTTGTGATCCTATCTTGTACACA 58.380 34.615 0.00 0.00 35.51 3.72
2295 2379 8.668510 ATCATTTGTGATCCTATCTTGTACAC 57.331 34.615 0.00 0.00 0.00 2.90
2299 2383 9.941325 GAGATATCATTTGTGATCCTATCTTGT 57.059 33.333 5.32 0.00 0.00 3.16
2300 2384 9.381033 GGAGATATCATTTGTGATCCTATCTTG 57.619 37.037 5.32 0.00 0.00 3.02
2301 2385 9.109246 TGGAGATATCATTTGTGATCCTATCTT 57.891 33.333 5.32 0.00 0.00 2.40
2302 2386 8.538701 GTGGAGATATCATTTGTGATCCTATCT 58.461 37.037 5.32 0.00 0.00 1.98
2303 2387 8.538701 AGTGGAGATATCATTTGTGATCCTATC 58.461 37.037 5.32 0.00 0.00 2.08
2304 2388 8.446714 AGTGGAGATATCATTTGTGATCCTAT 57.553 34.615 5.32 0.00 0.00 2.57
2305 2389 7.862274 AGTGGAGATATCATTTGTGATCCTA 57.138 36.000 5.32 0.00 0.00 2.94
2306 2390 6.760440 AGTGGAGATATCATTTGTGATCCT 57.240 37.500 5.32 0.00 0.00 3.24
2307 2391 7.601886 CACTAGTGGAGATATCATTTGTGATCC 59.398 40.741 15.49 1.09 32.65 3.36
2308 2392 7.117523 GCACTAGTGGAGATATCATTTGTGATC 59.882 40.741 23.95 0.00 32.65 2.92
2309 2393 6.933521 GCACTAGTGGAGATATCATTTGTGAT 59.066 38.462 23.95 0.00 32.65 3.06
2310 2394 6.127083 TGCACTAGTGGAGATATCATTTGTGA 60.127 38.462 23.95 0.00 32.65 3.58
2311 2395 6.051074 TGCACTAGTGGAGATATCATTTGTG 58.949 40.000 23.95 5.82 33.48 3.33
2312 2396 6.239217 TGCACTAGTGGAGATATCATTTGT 57.761 37.500 23.95 0.00 0.00 2.83
2324 2408 1.541310 CCCGGTTCTGCACTAGTGGA 61.541 60.000 23.95 20.48 0.00 4.02
2325 2409 1.079127 CCCGGTTCTGCACTAGTGG 60.079 63.158 23.95 8.81 0.00 4.00
2354 2438 3.258622 AGCACTAAAGGCTCTTACGAACT 59.741 43.478 0.00 0.00 36.81 3.01
2364 2448 1.421646 ACAGAACCAGCACTAAAGGCT 59.578 47.619 0.00 0.00 43.77 4.58
2485 2579 1.857965 GGTACTAAAGGTCTCCCCGT 58.142 55.000 0.00 0.00 38.74 5.28
2642 2738 2.028839 TCCACTTCAAACTAATCCGCGA 60.029 45.455 8.23 0.00 0.00 5.87
2835 3020 9.996554 TGATGATTAAATAGTGGTAATGACGAT 57.003 29.630 0.00 0.00 0.00 3.73
2872 3061 5.321102 AGTGTTGGTGGTGATTAAATAGCA 58.679 37.500 0.00 0.00 0.00 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.