Multiple sequence alignment - TraesCS5D01G303600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G303600 chr5D 100.000 4014 0 0 1 4014 399155743 399159756 0.000000e+00 7413.0
1 TraesCS5D01G303600 chr5B 87.533 3409 191 83 762 4014 479387575 479390905 0.000000e+00 3725.0
2 TraesCS5D01G303600 chr5A 87.668 1711 105 45 1786 3426 504778822 504780496 0.000000e+00 1893.0
3 TraesCS5D01G303600 chr5A 86.020 701 54 13 691 1357 504777797 504778487 0.000000e+00 712.0
4 TraesCS5D01G303600 chr5A 93.993 283 14 1 3735 4014 504780806 504781088 3.710000e-115 425.0
5 TraesCS5D01G303600 chr5A 86.473 207 14 5 3554 3751 504780587 504780788 8.740000e-52 215.0
6 TraesCS5D01G303600 chr5A 79.882 338 30 11 1384 1693 504778486 504778813 3.140000e-51 213.0
7 TraesCS5D01G303600 chr5A 100.000 32 0 0 3681 3712 504852183 504852214 4.330000e-05 60.2
8 TraesCS5D01G303600 chr7D 75.233 537 96 30 1 510 595965637 595965111 1.880000e-53 220.0
9 TraesCS5D01G303600 chr4B 79.195 298 45 7 106 387 94948113 94948409 1.470000e-44 191.0
10 TraesCS5D01G303600 chr3B 78.827 307 48 7 106 396 790407309 790407614 1.470000e-44 191.0
11 TraesCS5D01G303600 chr2B 79.137 278 37 11 106 365 549542275 549542001 5.330000e-39 172.0
12 TraesCS5D01G303600 chr3A 75.648 386 68 12 117 481 506473224 506472844 6.900000e-38 169.0
13 TraesCS5D01G303600 chr2A 79.184 245 36 12 161 396 48801794 48801556 5.370000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G303600 chr5D 399155743 399159756 4013 False 7413.0 7413 100.0000 1 4014 1 chr5D.!!$F1 4013
1 TraesCS5D01G303600 chr5B 479387575 479390905 3330 False 3725.0 3725 87.5330 762 4014 1 chr5B.!!$F1 3252
2 TraesCS5D01G303600 chr5A 504777797 504781088 3291 False 691.6 1893 86.8072 691 4014 5 chr5A.!!$F2 3323
3 TraesCS5D01G303600 chr7D 595965111 595965637 526 True 220.0 220 75.2330 1 510 1 chr7D.!!$R1 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
259 271 0.032615 TCCCGGGGCTGCATTTAAAT 60.033 50.0 23.50 0.0 0.0 1.40 F
528 555 0.032952 TTCGGACAGGAAAGGACGTG 59.967 55.0 0.00 0.0 0.0 4.49 F
591 618 0.037046 CAAGCCCCATGTTTGCTTCC 60.037 55.0 9.79 0.0 43.1 3.46 F
1768 1889 0.101040 CTACAAATGCGGCACCCATG 59.899 55.0 4.03 4.7 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1365 1452 0.471617 CCATCCTCCTCGAAGCCAAT 59.528 55.000 0.0 0.0 0.00 3.16 R
2050 2189 1.005097 AGGATGCATTTGCTCACCAGA 59.995 47.619 0.0 0.0 42.66 3.86 R
2358 2511 2.962421 GGAACAACCTGGATTGAAACCA 59.038 45.455 0.0 0.0 35.41 3.67 R
3384 3599 0.026803 GCTGAGCTTGCGTATTTCCG 59.973 55.000 0.0 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 4.451150 GGCACCGGCTCGTCATCA 62.451 66.667 0.00 0.00 40.87 3.07
43 44 2.434185 GCACCGGCTCGTCATCAA 60.434 61.111 0.00 0.00 36.96 2.57
51 52 1.519455 CTCGTCATCAACCGCCTCC 60.519 63.158 0.00 0.00 0.00 4.30
52 53 1.949847 CTCGTCATCAACCGCCTCCT 61.950 60.000 0.00 0.00 0.00 3.69
53 54 1.519455 CGTCATCAACCGCCTCCTC 60.519 63.158 0.00 0.00 0.00 3.71
54 55 1.901085 GTCATCAACCGCCTCCTCT 59.099 57.895 0.00 0.00 0.00 3.69
61 62 0.983378 AACCGCCTCCTCTATTGGCT 60.983 55.000 0.00 0.00 44.09 4.75
62 63 0.983378 ACCGCCTCCTCTATTGGCTT 60.983 55.000 0.00 0.00 44.09 4.35
67 68 1.839994 CCTCCTCTATTGGCTTGTCCA 59.160 52.381 0.00 0.00 44.85 4.02
70 71 2.846206 TCCTCTATTGGCTTGTCCACAT 59.154 45.455 0.00 0.00 46.55 3.21
72 73 3.370846 CCTCTATTGGCTTGTCCACATCA 60.371 47.826 0.00 0.00 46.55 3.07
73 74 4.458397 CTCTATTGGCTTGTCCACATCAT 58.542 43.478 0.00 0.00 46.55 2.45
74 75 4.858850 TCTATTGGCTTGTCCACATCATT 58.141 39.130 0.00 0.00 46.55 2.57
75 76 6.000246 TCTATTGGCTTGTCCACATCATTA 58.000 37.500 0.00 0.00 46.55 1.90
80 81 3.019564 GCTTGTCCACATCATTAGCCTT 58.980 45.455 0.00 0.00 0.00 4.35
81 82 3.065925 GCTTGTCCACATCATTAGCCTTC 59.934 47.826 0.00 0.00 0.00 3.46
84 85 2.115427 TCCACATCATTAGCCTTCGGA 58.885 47.619 0.00 0.00 0.00 4.55
97 99 0.523966 CTTCGGAGAGCTCGTCTGTT 59.476 55.000 8.37 0.00 38.43 3.16
99 101 1.817357 TCGGAGAGCTCGTCTGTTTA 58.183 50.000 8.37 0.00 34.71 2.01
100 102 1.467734 TCGGAGAGCTCGTCTGTTTAC 59.532 52.381 8.37 0.00 34.71 2.01
105 107 0.037232 AGCTCGTCTGTTTACTGGCC 60.037 55.000 0.00 0.00 0.00 5.36
106 108 0.037232 GCTCGTCTGTTTACTGGCCT 60.037 55.000 3.32 0.00 0.00 5.19
137 139 2.289072 CCGTAATGGCGATGATCTCCTT 60.289 50.000 2.83 0.00 0.00 3.36
138 140 3.393800 CGTAATGGCGATGATCTCCTTT 58.606 45.455 2.83 5.52 0.00 3.11
143 145 3.273434 TGGCGATGATCTCCTTTTTCTG 58.727 45.455 2.83 0.00 0.00 3.02
144 146 3.274288 GGCGATGATCTCCTTTTTCTGT 58.726 45.455 0.00 0.00 0.00 3.41
145 147 3.691609 GGCGATGATCTCCTTTTTCTGTT 59.308 43.478 0.00 0.00 0.00 3.16
146 148 4.201861 GGCGATGATCTCCTTTTTCTGTTC 60.202 45.833 0.00 0.00 0.00 3.18
147 149 4.493220 GCGATGATCTCCTTTTTCTGTTCG 60.493 45.833 0.00 0.00 0.00 3.95
148 150 4.033358 CGATGATCTCCTTTTTCTGTTCGG 59.967 45.833 0.00 0.00 0.00 4.30
149 151 4.617253 TGATCTCCTTTTTCTGTTCGGA 57.383 40.909 0.00 0.00 0.00 4.55
150 152 4.315803 TGATCTCCTTTTTCTGTTCGGAC 58.684 43.478 0.00 0.00 0.00 4.79
156 162 2.088950 TTTTCTGTTCGGACGATCCC 57.911 50.000 0.00 0.00 31.13 3.85
159 165 1.153628 CTGTTCGGACGATCCCACC 60.154 63.158 0.00 0.00 31.13 4.61
160 166 2.202703 GTTCGGACGATCCCACCG 60.203 66.667 11.86 11.86 46.71 4.94
186 192 0.254178 GGAGCTCAAGGAAGCCATGA 59.746 55.000 17.19 0.00 43.56 3.07
189 195 1.372087 GCTCAAGGAAGCCATGACGG 61.372 60.000 0.00 0.00 36.22 4.79
200 206 4.344865 ATGACGGGGTGTGGTGCC 62.345 66.667 0.00 0.00 0.00 5.01
226 232 1.006162 GATATAGGGAGCGGAGGAGGT 59.994 57.143 0.00 0.00 0.00 3.85
230 236 2.683933 GGAGCGGAGGAGGTTGGA 60.684 66.667 0.00 0.00 0.00 3.53
233 239 2.514824 GCGGAGGAGGTTGGATGC 60.515 66.667 0.00 0.00 0.00 3.91
234 240 2.202932 CGGAGGAGGTTGGATGCG 60.203 66.667 0.00 0.00 0.00 4.73
235 241 2.190578 GGAGGAGGTTGGATGCGG 59.809 66.667 0.00 0.00 0.00 5.69
236 242 2.514824 GAGGAGGTTGGATGCGGC 60.515 66.667 0.00 0.00 0.00 6.53
241 253 1.648467 GAGGTTGGATGCGGCTGTTC 61.648 60.000 0.00 0.00 0.00 3.18
259 271 0.032615 TCCCGGGGCTGCATTTAAAT 60.033 50.000 23.50 0.00 0.00 1.40
260 272 0.389025 CCCGGGGCTGCATTTAAATC 59.611 55.000 14.71 0.00 0.00 2.17
262 274 0.594796 CGGGGCTGCATTTAAATCGC 60.595 55.000 0.50 12.76 0.00 4.58
265 277 0.380378 GGCTGCATTTAAATCGCGGA 59.620 50.000 23.88 6.77 33.74 5.54
270 282 2.884012 TGCATTTAAATCGCGGATGGAT 59.116 40.909 6.13 0.00 0.00 3.41
282 302 3.839353 GATGGATGGCAGGCGAGGG 62.839 68.421 0.00 0.00 0.00 4.30
294 314 2.510906 CGAGGGGCCTAATGGTGG 59.489 66.667 0.84 0.00 35.27 4.61
296 316 2.006991 GAGGGGCCTAATGGTGGGT 61.007 63.158 0.84 0.00 35.27 4.51
297 317 2.278738 GGGGCCTAATGGTGGGTG 59.721 66.667 0.84 0.00 35.27 4.61
312 332 3.986006 GTGGCAGACGGACGGACA 61.986 66.667 0.00 0.00 0.00 4.02
316 336 2.338015 GCAGACGGACGGACAGGTA 61.338 63.158 0.00 0.00 0.00 3.08
317 337 1.870055 GCAGACGGACGGACAGGTAA 61.870 60.000 0.00 0.00 0.00 2.85
319 339 1.154150 GACGGACGGACAGGTAACG 60.154 63.158 0.00 0.00 46.39 3.18
329 349 1.318158 ACAGGTAACGCCGGAGTAGG 61.318 60.000 12.53 2.20 43.70 3.18
336 356 2.050350 CGCCGGAGTAGGTTCCTCA 61.050 63.158 5.05 0.00 34.96 3.86
365 385 3.117888 GCTCATGTTTATTGGAGGGAGGA 60.118 47.826 0.00 0.00 0.00 3.71
369 389 2.844348 TGTTTATTGGAGGGAGGAGGAC 59.156 50.000 0.00 0.00 0.00 3.85
370 390 2.844348 GTTTATTGGAGGGAGGAGGACA 59.156 50.000 0.00 0.00 0.00 4.02
371 391 2.961536 TATTGGAGGGAGGAGGACAA 57.038 50.000 0.00 0.00 0.00 3.18
374 394 1.192146 TGGAGGGAGGAGGACAAACG 61.192 60.000 0.00 0.00 0.00 3.60
375 395 1.597461 GAGGGAGGAGGACAAACGG 59.403 63.158 0.00 0.00 0.00 4.44
377 397 2.222013 GGGAGGAGGACAAACGGGT 61.222 63.158 0.00 0.00 0.00 5.28
381 401 2.265904 GGAGGACAAACGGGTTGCC 61.266 63.158 5.52 8.30 41.31 4.52
389 409 2.903350 ACGGGTTGCCGTTTGGAC 60.903 61.111 0.00 0.00 44.38 4.02
410 437 0.882927 CGGAGGCGTGAACCAAGAAA 60.883 55.000 0.00 0.00 0.00 2.52
417 444 0.234884 GTGAACCAAGAAACGGCGAG 59.765 55.000 16.62 0.00 0.00 5.03
418 445 0.882927 TGAACCAAGAAACGGCGAGG 60.883 55.000 16.62 7.78 0.00 4.63
419 446 0.601841 GAACCAAGAAACGGCGAGGA 60.602 55.000 16.62 0.00 0.00 3.71
420 447 0.036306 AACCAAGAAACGGCGAGGAT 59.964 50.000 16.62 0.00 0.00 3.24
421 448 0.673644 ACCAAGAAACGGCGAGGATG 60.674 55.000 16.62 5.68 0.00 3.51
422 449 1.369091 CCAAGAAACGGCGAGGATGG 61.369 60.000 16.62 11.37 0.00 3.51
425 452 1.819632 GAAACGGCGAGGATGGCAT 60.820 57.895 16.62 0.00 43.90 4.40
429 456 1.958205 CGGCGAGGATGGCATTCTC 60.958 63.158 23.50 23.50 43.90 2.87
451 478 3.987404 GGCACGCCTCTTCAATGT 58.013 55.556 0.00 0.00 0.00 2.71
454 481 1.970917 GCACGCCTCTTCAATGTCGG 61.971 60.000 0.00 0.00 0.00 4.79
463 490 0.396435 TTCAATGTCGGCTCCAGTGT 59.604 50.000 0.00 0.00 0.00 3.55
464 491 1.262417 TCAATGTCGGCTCCAGTGTA 58.738 50.000 0.00 0.00 0.00 2.90
495 522 1.725665 CTCTGTGCCGGCATGAATG 59.274 57.895 35.23 19.91 0.00 2.67
523 550 3.876300 CGCTTCGGACAGGAAAGG 58.124 61.111 0.00 0.00 0.00 3.11
524 551 1.292223 CGCTTCGGACAGGAAAGGA 59.708 57.895 0.00 0.00 0.00 3.36
525 552 1.014564 CGCTTCGGACAGGAAAGGAC 61.015 60.000 0.00 0.00 0.00 3.85
526 553 1.014564 GCTTCGGACAGGAAAGGACG 61.015 60.000 0.00 0.00 0.00 4.79
527 554 0.317479 CTTCGGACAGGAAAGGACGT 59.683 55.000 0.00 0.00 0.00 4.34
528 555 0.032952 TTCGGACAGGAAAGGACGTG 59.967 55.000 0.00 0.00 0.00 4.49
529 556 1.374252 CGGACAGGAAAGGACGTGG 60.374 63.158 0.00 0.00 0.00 4.94
530 557 1.752833 GGACAGGAAAGGACGTGGT 59.247 57.895 0.00 0.00 0.00 4.16
531 558 0.320508 GGACAGGAAAGGACGTGGTC 60.321 60.000 0.00 0.00 0.00 4.02
532 559 0.391597 GACAGGAAAGGACGTGGTCA 59.608 55.000 0.00 0.00 33.68 4.02
533 560 0.393077 ACAGGAAAGGACGTGGTCAG 59.607 55.000 0.00 0.00 33.68 3.51
534 561 0.320771 CAGGAAAGGACGTGGTCAGG 60.321 60.000 0.00 0.00 33.68 3.86
535 562 0.763223 AGGAAAGGACGTGGTCAGGT 60.763 55.000 0.00 0.00 33.68 4.00
536 563 0.108019 GGAAAGGACGTGGTCAGGTT 59.892 55.000 0.00 0.00 33.68 3.50
537 564 1.226746 GAAAGGACGTGGTCAGGTTG 58.773 55.000 0.00 0.00 33.68 3.77
538 565 0.544697 AAAGGACGTGGTCAGGTTGT 59.455 50.000 0.00 0.00 33.68 3.32
539 566 0.106149 AAGGACGTGGTCAGGTTGTC 59.894 55.000 0.00 0.00 33.68 3.18
540 567 1.663702 GGACGTGGTCAGGTTGTCG 60.664 63.158 0.00 0.00 33.68 4.35
541 568 1.663702 GACGTGGTCAGGTTGTCGG 60.664 63.158 0.00 0.00 32.09 4.79
542 569 2.079020 GACGTGGTCAGGTTGTCGGA 62.079 60.000 0.00 0.00 32.09 4.55
543 570 1.372997 CGTGGTCAGGTTGTCGGAG 60.373 63.158 0.00 0.00 0.00 4.63
544 571 1.004918 GTGGTCAGGTTGTCGGAGG 60.005 63.158 0.00 0.00 0.00 4.30
545 572 2.047179 GGTCAGGTTGTCGGAGGC 60.047 66.667 0.00 0.00 0.00 4.70
546 573 2.741092 GTCAGGTTGTCGGAGGCA 59.259 61.111 0.00 0.00 45.30 4.75
553 580 2.988800 TGTCGGAGGCATGCATGA 59.011 55.556 30.64 5.03 36.97 3.07
554 581 1.450134 TGTCGGAGGCATGCATGAC 60.450 57.895 30.64 28.31 36.97 3.06
555 582 1.450134 GTCGGAGGCATGCATGACA 60.450 57.895 33.44 10.99 38.64 3.58
556 583 1.153309 TCGGAGGCATGCATGACAG 60.153 57.895 33.44 22.97 38.64 3.51
557 584 2.831366 CGGAGGCATGCATGACAGC 61.831 63.158 33.44 23.60 38.64 4.40
558 585 2.713770 GAGGCATGCATGACAGCG 59.286 61.111 33.44 5.12 38.64 5.18
559 586 2.827190 AGGCATGCATGACAGCGG 60.827 61.111 33.44 4.32 38.64 5.52
560 587 3.136123 GGCATGCATGACAGCGGT 61.136 61.111 30.64 0.00 35.34 5.68
561 588 2.406401 GCATGCATGACAGCGGTC 59.594 61.111 30.64 10.32 44.57 4.79
562 589 2.110967 GCATGCATGACAGCGGTCT 61.111 57.895 30.64 1.11 44.61 3.85
563 590 1.719709 CATGCATGACAGCGGTCTG 59.280 57.895 22.59 13.65 44.61 3.51
564 591 1.450848 ATGCATGACAGCGGTCTGG 60.451 57.895 17.94 10.69 44.54 3.86
565 592 2.046892 GCATGACAGCGGTCTGGT 60.047 61.111 17.94 1.78 44.54 4.00
566 593 2.103042 GCATGACAGCGGTCTGGTC 61.103 63.158 17.94 2.15 44.54 4.02
567 594 1.293179 CATGACAGCGGTCTGGTCA 59.707 57.895 17.94 8.46 44.54 4.02
568 595 1.016130 CATGACAGCGGTCTGGTCAC 61.016 60.000 17.94 0.00 44.54 3.67
569 596 1.188219 ATGACAGCGGTCTGGTCACT 61.188 55.000 17.94 0.00 44.54 3.41
570 597 1.080434 GACAGCGGTCTGGTCACTC 60.080 63.158 9.95 0.00 44.54 3.51
571 598 1.806461 GACAGCGGTCTGGTCACTCA 61.806 60.000 9.95 0.00 44.54 3.41
572 599 1.373497 CAGCGGTCTGGTCACTCAC 60.373 63.158 0.00 0.00 36.68 3.51
573 600 1.832608 AGCGGTCTGGTCACTCACA 60.833 57.895 0.00 0.00 0.00 3.58
574 601 1.069090 GCGGTCTGGTCACTCACAA 59.931 57.895 0.00 0.00 0.00 3.33
575 602 0.946221 GCGGTCTGGTCACTCACAAG 60.946 60.000 0.00 0.00 0.00 3.16
576 603 0.946221 CGGTCTGGTCACTCACAAGC 60.946 60.000 0.00 0.00 0.00 4.01
577 604 0.603975 GGTCTGGTCACTCACAAGCC 60.604 60.000 0.00 0.00 0.00 4.35
578 605 0.603975 GTCTGGTCACTCACAAGCCC 60.604 60.000 0.00 0.00 0.00 5.19
579 606 1.302832 CTGGTCACTCACAAGCCCC 60.303 63.158 0.00 0.00 0.00 5.80
580 607 2.055689 CTGGTCACTCACAAGCCCCA 62.056 60.000 0.00 0.00 0.00 4.96
581 608 1.380302 GGTCACTCACAAGCCCCAT 59.620 57.895 0.00 0.00 0.00 4.00
582 609 0.962356 GGTCACTCACAAGCCCCATG 60.962 60.000 0.00 0.00 0.00 3.66
583 610 0.250901 GTCACTCACAAGCCCCATGT 60.251 55.000 0.00 0.00 0.00 3.21
584 611 0.478072 TCACTCACAAGCCCCATGTT 59.522 50.000 0.00 0.00 0.00 2.71
585 612 1.133513 TCACTCACAAGCCCCATGTTT 60.134 47.619 0.00 0.00 0.00 2.83
586 613 1.000060 CACTCACAAGCCCCATGTTTG 60.000 52.381 0.00 0.00 40.65 2.93
587 614 0.037975 CTCACAAGCCCCATGTTTGC 60.038 55.000 0.00 0.00 38.62 3.68
588 615 0.469705 TCACAAGCCCCATGTTTGCT 60.470 50.000 0.00 0.00 38.62 3.91
589 616 0.393820 CACAAGCCCCATGTTTGCTT 59.606 50.000 7.54 7.54 45.69 3.91
590 617 0.681175 ACAAGCCCCATGTTTGCTTC 59.319 50.000 9.79 0.00 43.10 3.86
591 618 0.037046 CAAGCCCCATGTTTGCTTCC 60.037 55.000 9.79 0.00 43.10 3.46
592 619 0.471591 AAGCCCCATGTTTGCTTCCA 60.472 50.000 7.54 0.00 41.23 3.53
593 620 0.252375 AGCCCCATGTTTGCTTCCAT 60.252 50.000 0.00 0.00 29.17 3.41
594 621 0.614812 GCCCCATGTTTGCTTCCATT 59.385 50.000 0.00 0.00 0.00 3.16
595 622 1.003464 GCCCCATGTTTGCTTCCATTT 59.997 47.619 0.00 0.00 0.00 2.32
596 623 2.552809 GCCCCATGTTTGCTTCCATTTT 60.553 45.455 0.00 0.00 0.00 1.82
597 624 3.337358 CCCCATGTTTGCTTCCATTTTC 58.663 45.455 0.00 0.00 0.00 2.29
598 625 3.244491 CCCCATGTTTGCTTCCATTTTCA 60.244 43.478 0.00 0.00 0.00 2.69
599 626 4.566070 CCCCATGTTTGCTTCCATTTTCAT 60.566 41.667 0.00 0.00 0.00 2.57
600 627 5.005094 CCCATGTTTGCTTCCATTTTCATT 58.995 37.500 0.00 0.00 0.00 2.57
601 628 5.106475 CCCATGTTTGCTTCCATTTTCATTG 60.106 40.000 0.00 0.00 0.00 2.82
602 629 5.701750 CCATGTTTGCTTCCATTTTCATTGA 59.298 36.000 0.00 0.00 0.00 2.57
603 630 6.205076 CCATGTTTGCTTCCATTTTCATTGAA 59.795 34.615 0.00 0.00 0.00 2.69
604 631 7.255173 CCATGTTTGCTTCCATTTTCATTGAAA 60.255 33.333 7.74 7.74 0.00 2.69
605 632 7.621428 TGTTTGCTTCCATTTTCATTGAAAA 57.379 28.000 22.94 22.94 44.04 2.29
606 633 7.695820 TGTTTGCTTCCATTTTCATTGAAAAG 58.304 30.769 24.31 17.20 43.33 2.27
607 634 6.864360 TTGCTTCCATTTTCATTGAAAAGG 57.136 33.333 24.31 23.67 43.33 3.11
608 635 6.172136 TGCTTCCATTTTCATTGAAAAGGA 57.828 33.333 28.64 26.10 43.18 3.36
609 636 5.990996 TGCTTCCATTTTCATTGAAAAGGAC 59.009 36.000 28.64 20.67 43.18 3.85
610 637 5.119125 GCTTCCATTTTCATTGAAAAGGACG 59.881 40.000 28.64 25.81 43.18 4.79
611 638 4.555262 TCCATTTTCATTGAAAAGGACGC 58.445 39.130 28.64 0.00 43.18 5.19
612 639 4.280677 TCCATTTTCATTGAAAAGGACGCT 59.719 37.500 28.64 11.40 43.18 5.07
613 640 4.622740 CCATTTTCATTGAAAAGGACGCTC 59.377 41.667 28.64 0.00 43.18 5.03
614 641 3.536158 TTTCATTGAAAAGGACGCTCG 57.464 42.857 9.36 0.00 35.76 5.03
615 642 1.438651 TCATTGAAAAGGACGCTCGG 58.561 50.000 0.00 0.00 28.02 4.63
616 643 1.001520 TCATTGAAAAGGACGCTCGGA 59.998 47.619 0.00 0.00 28.02 4.55
617 644 1.128692 CATTGAAAAGGACGCTCGGAC 59.871 52.381 0.00 0.00 0.00 4.79
618 645 0.601841 TTGAAAAGGACGCTCGGACC 60.602 55.000 0.00 0.00 0.00 4.46
619 646 2.048503 AAAAGGACGCTCGGACCG 60.049 61.111 7.84 7.84 0.00 4.79
620 647 3.584868 AAAAGGACGCTCGGACCGG 62.585 63.158 15.25 0.00 0.00 5.28
624 651 4.047059 GACGCTCGGACCGGTCAA 62.047 66.667 34.40 21.07 0.00 3.18
625 652 4.353437 ACGCTCGGACCGGTCAAC 62.353 66.667 34.40 18.08 0.00 3.18
636 663 3.102515 CGGTCAACGGTGAGTACAG 57.897 57.895 1.63 0.00 39.42 2.74
637 664 0.388134 CGGTCAACGGTGAGTACAGG 60.388 60.000 1.63 0.00 39.42 4.00
638 665 0.963962 GGTCAACGGTGAGTACAGGA 59.036 55.000 1.63 0.00 33.27 3.86
639 666 1.336609 GGTCAACGGTGAGTACAGGAC 60.337 57.143 1.63 0.00 33.27 3.85
640 667 0.963962 TCAACGGTGAGTACAGGACC 59.036 55.000 0.00 0.00 0.00 4.46
641 668 0.677288 CAACGGTGAGTACAGGACCA 59.323 55.000 0.00 0.00 0.00 4.02
642 669 1.069513 CAACGGTGAGTACAGGACCAA 59.930 52.381 0.00 0.00 0.00 3.67
643 670 1.416243 ACGGTGAGTACAGGACCAAA 58.584 50.000 0.00 0.00 0.00 3.28
644 671 1.764134 ACGGTGAGTACAGGACCAAAA 59.236 47.619 0.00 0.00 0.00 2.44
645 672 2.140717 CGGTGAGTACAGGACCAAAAC 58.859 52.381 0.00 0.00 0.00 2.43
646 673 2.484065 CGGTGAGTACAGGACCAAAACA 60.484 50.000 0.00 0.00 0.00 2.83
647 674 2.876550 GGTGAGTACAGGACCAAAACAC 59.123 50.000 0.00 0.00 0.00 3.32
648 675 3.537580 GTGAGTACAGGACCAAAACACA 58.462 45.455 0.00 0.00 0.00 3.72
649 676 4.134563 GTGAGTACAGGACCAAAACACAT 58.865 43.478 0.00 0.00 0.00 3.21
650 677 5.302360 GTGAGTACAGGACCAAAACACATA 58.698 41.667 0.00 0.00 0.00 2.29
651 678 5.178809 GTGAGTACAGGACCAAAACACATAC 59.821 44.000 0.00 0.00 0.00 2.39
652 679 4.312443 AGTACAGGACCAAAACACATACG 58.688 43.478 0.00 0.00 0.00 3.06
653 680 3.478857 ACAGGACCAAAACACATACGA 57.521 42.857 0.00 0.00 0.00 3.43
654 681 3.811083 ACAGGACCAAAACACATACGAA 58.189 40.909 0.00 0.00 0.00 3.85
655 682 3.562557 ACAGGACCAAAACACATACGAAC 59.437 43.478 0.00 0.00 0.00 3.95
656 683 3.058501 CAGGACCAAAACACATACGAACC 60.059 47.826 0.00 0.00 0.00 3.62
657 684 2.096119 GGACCAAAACACATACGAACCG 60.096 50.000 0.00 0.00 0.00 4.44
658 685 1.264826 ACCAAAACACATACGAACCGC 59.735 47.619 0.00 0.00 0.00 5.68
659 686 1.264557 CCAAAACACATACGAACCGCA 59.735 47.619 0.00 0.00 0.00 5.69
660 687 2.303537 CAAAACACATACGAACCGCAC 58.696 47.619 0.00 0.00 0.00 5.34
661 688 0.509499 AAACACATACGAACCGCACG 59.491 50.000 0.00 0.00 0.00 5.34
662 689 1.286354 AACACATACGAACCGCACGG 61.286 55.000 7.71 7.71 42.03 4.94
673 700 4.789075 CGCACGGTCCGGACGAAT 62.789 66.667 27.68 13.04 32.72 3.34
674 701 2.884207 GCACGGTCCGGACGAATC 60.884 66.667 27.68 13.20 34.93 2.52
675 702 2.578713 CACGGTCCGGACGAATCG 60.579 66.667 27.68 25.46 34.93 3.34
676 703 2.747460 ACGGTCCGGACGAATCGA 60.747 61.111 29.58 0.00 34.93 3.59
677 704 2.277756 CGGTCCGGACGAATCGAC 60.278 66.667 27.68 11.35 0.00 4.20
678 705 2.103736 GGTCCGGACGAATCGACC 59.896 66.667 27.68 12.40 38.21 4.79
679 706 2.703798 GGTCCGGACGAATCGACCA 61.704 63.158 27.68 2.71 41.25 4.02
680 707 1.436336 GTCCGGACGAATCGACCAT 59.564 57.895 20.85 0.00 41.25 3.55
681 708 0.664761 GTCCGGACGAATCGACCATA 59.335 55.000 20.85 7.96 41.25 2.74
682 709 1.268899 GTCCGGACGAATCGACCATAT 59.731 52.381 20.85 0.00 41.25 1.78
683 710 1.538512 TCCGGACGAATCGACCATATC 59.461 52.381 22.13 2.76 41.25 1.63
684 711 1.268625 CCGGACGAATCGACCATATCA 59.731 52.381 22.13 0.00 41.25 2.15
685 712 2.094700 CCGGACGAATCGACCATATCAT 60.095 50.000 22.13 0.00 41.25 2.45
686 713 3.172050 CGGACGAATCGACCATATCATC 58.828 50.000 22.13 0.63 41.25 2.92
687 714 3.365969 CGGACGAATCGACCATATCATCA 60.366 47.826 22.13 0.00 41.25 3.07
688 715 3.921021 GGACGAATCGACCATATCATCAC 59.079 47.826 18.33 0.00 40.91 3.06
689 716 3.565516 ACGAATCGACCATATCATCACG 58.434 45.455 10.55 0.00 0.00 4.35
690 717 3.004419 ACGAATCGACCATATCATCACGT 59.996 43.478 10.55 0.00 0.00 4.49
691 718 3.361940 CGAATCGACCATATCATCACGTG 59.638 47.826 9.94 9.94 0.00 4.49
692 719 4.546570 GAATCGACCATATCATCACGTGA 58.453 43.478 22.48 22.48 42.06 4.35
693 720 4.584327 ATCGACCATATCATCACGTGAA 57.416 40.909 24.13 7.48 40.97 3.18
694 721 3.964909 TCGACCATATCATCACGTGAAG 58.035 45.455 24.13 19.02 40.97 3.02
695 722 3.630312 TCGACCATATCATCACGTGAAGA 59.370 43.478 24.04 24.04 40.97 2.87
696 723 4.097286 TCGACCATATCATCACGTGAAGAA 59.903 41.667 25.35 15.49 40.97 2.52
697 724 4.803613 CGACCATATCATCACGTGAAGAAA 59.196 41.667 25.35 11.40 40.97 2.52
698 725 5.290885 CGACCATATCATCACGTGAAGAAAA 59.709 40.000 25.35 17.23 40.97 2.29
699 726 6.183360 CGACCATATCATCACGTGAAGAAAAA 60.183 38.462 25.35 14.98 40.97 1.94
724 751 9.443323 AAAAACTTAGTAACAAACAATTTGGCT 57.557 25.926 6.28 4.13 44.81 4.75
725 752 8.419076 AAACTTAGTAACAAACAATTTGGCTG 57.581 30.769 6.28 0.34 44.81 4.85
729 756 4.649218 AGTAACAAACAATTTGGCTGAGGT 59.351 37.500 6.28 0.00 44.81 3.85
747 774 4.335037 TGAGGTAAACAAAACCACGGTTAC 59.665 41.667 0.97 0.00 39.64 2.50
748 775 3.312146 AGGTAAACAAAACCACGGTTACG 59.688 43.478 0.97 0.00 39.64 3.18
752 783 3.124578 ACAAAACCACGGTTACGGTAT 57.875 42.857 0.97 0.00 46.48 2.73
756 787 0.381801 ACCACGGTTACGGTATAGCG 59.618 55.000 21.96 21.96 46.48 4.26
882 926 4.631740 CACCCCCAACCCAACCCC 62.632 72.222 0.00 0.00 0.00 4.95
884 928 3.851184 CCCCCAACCCAACCCCAA 61.851 66.667 0.00 0.00 0.00 4.12
885 929 2.525629 CCCCAACCCAACCCCAAC 60.526 66.667 0.00 0.00 0.00 3.77
886 930 2.525629 CCCAACCCAACCCCAACC 60.526 66.667 0.00 0.00 0.00 3.77
887 931 2.525629 CCAACCCAACCCCAACCC 60.526 66.667 0.00 0.00 0.00 4.11
888 932 2.525629 CAACCCAACCCCAACCCC 60.526 66.667 0.00 0.00 0.00 4.95
893 937 2.283173 CAACCCCAACCCCAGAGC 60.283 66.667 0.00 0.00 0.00 4.09
910 955 1.947146 GCCGCAACGAAACCAAACC 60.947 57.895 0.00 0.00 0.00 3.27
912 957 0.868177 CCGCAACGAAACCAAACCAC 60.868 55.000 0.00 0.00 0.00 4.16
915 960 0.248702 CAACGAAACCAAACCACCCG 60.249 55.000 0.00 0.00 0.00 5.28
916 961 0.394080 AACGAAACCAAACCACCCGA 60.394 50.000 0.00 0.00 0.00 5.14
967 1012 3.579302 CAAGGCACCCAGACCCCA 61.579 66.667 0.00 0.00 0.00 4.96
968 1013 3.260100 AAGGCACCCAGACCCCAG 61.260 66.667 0.00 0.00 0.00 4.45
969 1014 3.810687 AAGGCACCCAGACCCCAGA 62.811 63.158 0.00 0.00 0.00 3.86
970 1015 4.035102 GGCACCCAGACCCCAGAC 62.035 72.222 0.00 0.00 0.00 3.51
971 1016 4.035102 GCACCCAGACCCCAGACC 62.035 72.222 0.00 0.00 0.00 3.85
972 1017 2.203998 CACCCAGACCCCAGACCT 60.204 66.667 0.00 0.00 0.00 3.85
1000 1045 2.125832 GGAATCGGAACCGCGTCA 60.126 61.111 4.92 0.00 39.59 4.35
1206 1289 1.520666 CCTCGTGCGTAATCCCCTT 59.479 57.895 0.00 0.00 0.00 3.95
1255 1342 0.391661 GCCTCGCTTGGACAGATTGA 60.392 55.000 0.00 0.00 0.00 2.57
1284 1371 2.126307 CCCGATCTAGCATCGCGG 60.126 66.667 6.13 13.75 39.95 6.46
1317 1404 5.221322 GCTGTCTGGATGGGGATTTTTAATC 60.221 44.000 0.00 0.00 0.00 1.75
1323 1410 3.021177 TGGGGATTTTTAATCGGGGTC 57.979 47.619 0.00 0.00 0.00 4.46
1343 1430 1.447314 GGTTAGGGTTGGACGCGAG 60.447 63.158 15.93 0.00 36.04 5.03
1364 1451 4.733542 ACGGCGGGGGATTGGTTG 62.734 66.667 13.24 0.00 0.00 3.77
1365 1452 4.418328 CGGCGGGGGATTGGTTGA 62.418 66.667 0.00 0.00 0.00 3.18
1366 1453 2.278738 GGCGGGGGATTGGTTGAT 59.721 61.111 0.00 0.00 0.00 2.57
1367 1454 1.381191 GGCGGGGGATTGGTTGATT 60.381 57.895 0.00 0.00 0.00 2.57
1374 1461 1.134946 GGGATTGGTTGATTGGCTTCG 59.865 52.381 0.00 0.00 0.00 3.79
1409 1496 1.997928 GCAGCTCTTCGGAATTGGCC 61.998 60.000 0.00 0.00 0.00 5.36
1422 1509 0.911769 ATTGGCCCGTCTGAGATTCA 59.088 50.000 0.00 0.00 0.00 2.57
1423 1510 0.911769 TTGGCCCGTCTGAGATTCAT 59.088 50.000 0.00 0.00 0.00 2.57
1428 1515 1.208052 CCCGTCTGAGATTCATGGTGT 59.792 52.381 0.00 0.00 0.00 4.16
1433 1520 0.804364 TGAGATTCATGGTGTTGCGC 59.196 50.000 0.00 0.00 0.00 6.09
1450 1537 3.434319 CGCGGCCTGAATTGTGCT 61.434 61.111 0.00 0.00 0.00 4.40
1452 1539 2.879907 CGGCCTGAATTGTGCTGG 59.120 61.111 0.00 0.00 0.00 4.85
1496 1583 2.674380 CCCTTCAGTGGCTGGCAC 60.674 66.667 25.03 25.03 31.51 5.01
1520 1609 3.756434 TCGCCTTGCAACTAATTTAGCTT 59.244 39.130 0.00 0.00 0.00 3.74
1586 1701 1.665679 GATGCGTGGTTGACCTGTATG 59.334 52.381 1.34 0.00 36.82 2.39
1587 1702 0.394938 TGCGTGGTTGACCTGTATGT 59.605 50.000 1.34 0.00 36.82 2.29
1597 1712 6.113411 GGTTGACCTGTATGTATAGCTTGTT 58.887 40.000 0.00 0.00 0.00 2.83
1613 1734 6.743575 AGCTTGTTTCCATCACTACATAAC 57.256 37.500 0.00 0.00 0.00 1.89
1705 1826 6.071221 GGTTTGGGATTTATTTAGGAACGGTT 60.071 38.462 0.00 0.00 0.00 4.44
1706 1827 6.518208 TTGGGATTTATTTAGGAACGGTTG 57.482 37.500 0.00 0.00 0.00 3.77
1707 1828 4.951094 TGGGATTTATTTAGGAACGGTTGG 59.049 41.667 0.00 0.00 0.00 3.77
1708 1829 4.951715 GGGATTTATTTAGGAACGGTTGGT 59.048 41.667 0.00 0.00 0.00 3.67
1713 1834 0.535553 TTAGGAACGGTTGGTGCACC 60.536 55.000 29.67 29.67 0.00 5.01
1724 1845 3.036084 GTGCACCGAGACACCGTG 61.036 66.667 5.22 0.00 0.00 4.94
1768 1889 0.101040 CTACAAATGCGGCACCCATG 59.899 55.000 4.03 4.70 0.00 3.66
1787 1909 3.469899 TGCATTTATCTCGTTGTGCAC 57.530 42.857 10.75 10.75 37.63 4.57
1816 1938 5.962433 AGATGAGGAATGCTTTCATTGTTG 58.038 37.500 13.72 0.00 42.60 3.33
1848 1977 8.862325 TTTAGAAGGCTTTCTCATTATGTTCA 57.138 30.769 15.17 0.00 42.60 3.18
1860 1989 7.345691 TCTCATTATGTTCAGCTTGGGATTTA 58.654 34.615 0.00 0.00 0.00 1.40
1861 1990 8.000709 TCTCATTATGTTCAGCTTGGGATTTAT 58.999 33.333 0.00 0.00 0.00 1.40
1862 1991 8.169977 TCATTATGTTCAGCTTGGGATTTATC 57.830 34.615 0.00 0.00 0.00 1.75
1863 1992 8.000709 TCATTATGTTCAGCTTGGGATTTATCT 58.999 33.333 0.00 0.00 0.00 1.98
1900 2039 7.704472 TGTTTGCATAAAAACAACTAACTGGAG 59.296 33.333 0.00 0.00 44.79 3.86
1903 2042 6.770785 TGCATAAAAACAACTAACTGGAGTCT 59.229 34.615 0.00 0.00 0.00 3.24
2050 2189 4.347607 ACTTCTTTGCCTTTGATATGCCT 58.652 39.130 0.00 0.00 0.00 4.75
2085 2227 3.718434 TGCATCCTGAAATGACCCTATCT 59.282 43.478 0.00 0.00 0.00 1.98
2096 2238 3.994317 TGACCCTATCTCCTGTGAATCA 58.006 45.455 0.00 0.00 0.00 2.57
2099 2241 4.366267 ACCCTATCTCCTGTGAATCAGTT 58.634 43.478 0.00 0.00 42.19 3.16
2179 2324 7.315142 GGCAAAATGTAAATTCTCTGACATGA 58.685 34.615 0.00 0.00 32.92 3.07
2277 2426 0.249911 GTTGAGCCGGTGAGTTGTCT 60.250 55.000 1.90 0.00 0.00 3.41
2295 2444 8.853077 AGTTGTCTCTGAACATTTTATGATCA 57.147 30.769 0.00 0.00 39.36 2.92
2353 2506 8.780846 AAACACACATACGAAGATATTAACCA 57.219 30.769 0.00 0.00 0.00 3.67
2357 2510 7.655732 CACACATACGAAGATATTAACCATGGA 59.344 37.037 21.47 0.00 0.00 3.41
2358 2511 8.375506 ACACATACGAAGATATTAACCATGGAT 58.624 33.333 21.47 9.83 0.00 3.41
2383 2537 3.874383 TCAATCCAGGTTGTTCCAGAA 57.126 42.857 0.00 0.00 39.02 3.02
2621 2775 4.934797 TCTGACATTTCCCAATCTCCTT 57.065 40.909 0.00 0.00 0.00 3.36
2622 2776 4.592942 TCTGACATTTCCCAATCTCCTTG 58.407 43.478 0.00 0.00 34.42 3.61
2630 2784 1.467920 CCAATCTCCTTGTTCCAGCC 58.532 55.000 0.00 0.00 32.61 4.85
2636 2790 1.005215 CTCCTTGTTCCAGCCATTCCT 59.995 52.381 0.00 0.00 0.00 3.36
2639 2793 2.089980 CTTGTTCCAGCCATTCCTCTG 58.910 52.381 0.00 0.00 0.00 3.35
2640 2794 1.067295 TGTTCCAGCCATTCCTCTGT 58.933 50.000 0.00 0.00 0.00 3.41
2641 2795 1.425066 TGTTCCAGCCATTCCTCTGTT 59.575 47.619 0.00 0.00 0.00 3.16
2642 2796 1.815003 GTTCCAGCCATTCCTCTGTTG 59.185 52.381 0.00 0.00 0.00 3.33
2643 2797 0.322816 TCCAGCCATTCCTCTGTTGC 60.323 55.000 0.00 0.00 0.00 4.17
2648 2802 0.109597 CCATTCCTCTGTTGCGTTGC 60.110 55.000 0.00 0.00 0.00 4.17
2650 2804 0.884704 ATTCCTCTGTTGCGTTGCGT 60.885 50.000 0.00 0.00 0.00 5.24
2778 2934 4.473520 CACGGCCCCGCTGAGAAT 62.474 66.667 6.63 0.00 44.19 2.40
2780 2936 4.473520 CGGCCCCGCTGAGAATGT 62.474 66.667 0.00 0.00 37.02 2.71
2823 2979 1.522258 GCAAAGTGCATGTGTTTTCGG 59.478 47.619 0.00 0.00 44.26 4.30
2867 3027 6.292542 CGAGCAATATATCTGTTTGGTGTCAG 60.293 42.308 0.00 0.00 31.75 3.51
2868 3028 5.824624 AGCAATATATCTGTTTGGTGTCAGG 59.175 40.000 0.00 0.00 33.13 3.86
2901 3099 9.197306 TGGAAGTATAGTAGTATGATTGTGTGT 57.803 33.333 0.00 0.00 0.00 3.72
3019 3228 2.469274 ACTGGTCTGAATGCTGAGTG 57.531 50.000 0.00 0.00 0.00 3.51
3023 3232 3.603532 TGGTCTGAATGCTGAGTGAATC 58.396 45.455 0.00 0.00 0.00 2.52
3035 3244 3.838120 TGAGTGAATCTGTGTCGACATC 58.162 45.455 23.12 15.02 0.00 3.06
3038 3247 4.489810 AGTGAATCTGTGTCGACATCTTC 58.510 43.478 23.12 19.75 0.00 2.87
3070 3282 0.541764 TGGTTTGGTCCATTCAGCCC 60.542 55.000 0.00 0.00 31.96 5.19
3098 3310 3.293337 CCTTGGATGGCAATCAGAATCA 58.707 45.455 2.85 0.00 34.17 2.57
3099 3311 3.318275 CCTTGGATGGCAATCAGAATCAG 59.682 47.826 2.85 0.00 34.17 2.90
3100 3312 3.937778 TGGATGGCAATCAGAATCAGA 57.062 42.857 2.85 0.00 34.17 3.27
3101 3313 4.239428 TGGATGGCAATCAGAATCAGAA 57.761 40.909 2.85 0.00 34.17 3.02
3102 3314 4.800023 TGGATGGCAATCAGAATCAGAAT 58.200 39.130 2.85 0.00 34.17 2.40
3108 3320 5.934043 TGGCAATCAGAATCAGAATATACCG 59.066 40.000 0.00 0.00 0.00 4.02
3180 3392 4.320788 GCTTGGCTATATGTTTGCTGATCC 60.321 45.833 0.00 0.00 0.00 3.36
3215 3427 5.630121 AGTGTCCCTTGTAATCATCAAACA 58.370 37.500 0.00 0.00 0.00 2.83
3216 3428 5.473504 AGTGTCCCTTGTAATCATCAAACAC 59.526 40.000 0.00 0.00 35.80 3.32
3218 3430 6.016276 GTGTCCCTTGTAATCATCAAACACTT 60.016 38.462 0.00 0.00 34.26 3.16
3220 3432 5.476599 TCCCTTGTAATCATCAAACACTTGG 59.523 40.000 0.00 0.00 33.01 3.61
3223 3435 7.309990 CCCTTGTAATCATCAAACACTTGGATT 60.310 37.037 0.00 0.00 31.97 3.01
3239 3451 5.010617 ACTTGGATTGGAATAAACACACCAC 59.989 40.000 0.00 0.00 31.87 4.16
3246 3458 5.063204 TGGAATAAACACACCACAGAGAAG 58.937 41.667 0.00 0.00 0.00 2.85
3248 3460 1.680338 AAACACACCACAGAGAAGGC 58.320 50.000 0.00 0.00 0.00 4.35
3252 3464 1.895798 CACACCACAGAGAAGGCTAGA 59.104 52.381 0.00 0.00 0.00 2.43
3263 3475 4.119136 GAGAAGGCTAGAGATTGAGCAAC 58.881 47.826 0.00 0.00 40.64 4.17
3309 3524 9.989869 GGAAGAAAATATTACTACAAGCAGTTC 57.010 33.333 0.00 0.00 0.00 3.01
3314 3529 8.848474 AAATATTACTACAAGCAGTTCACTGT 57.152 30.769 8.72 0.00 45.45 3.55
3370 3585 5.058149 AGCATCTATCTCTCGTGCAATAG 57.942 43.478 0.00 0.00 38.23 1.73
3384 3599 7.223971 TCTCGTGCAATAGTATTACAAACCATC 59.776 37.037 0.00 0.00 0.00 3.51
3403 3619 0.026803 CGGAAATACGCAAGCTCAGC 59.973 55.000 0.00 0.00 45.62 4.26
3435 3662 9.283768 TGGTTTCACAGCATTATATATTACAGG 57.716 33.333 0.00 0.00 0.00 4.00
3442 3669 9.823647 ACAGCATTATATATTACAGGCATAGTC 57.176 33.333 0.00 0.00 0.00 2.59
3444 3671 7.653713 AGCATTATATATTACAGGCATAGTCGC 59.346 37.037 0.00 0.00 0.00 5.19
3445 3672 7.438160 GCATTATATATTACAGGCATAGTCGCA 59.562 37.037 0.00 0.00 0.00 5.10
3446 3673 8.755941 CATTATATATTACAGGCATAGTCGCAC 58.244 37.037 0.00 0.00 0.00 5.34
3447 3674 4.873746 ATATTACAGGCATAGTCGCACT 57.126 40.909 0.00 0.00 0.00 4.40
3485 3715 1.806542 CAAATTCTGCACCGTGTAGCT 59.193 47.619 11.47 0.00 29.77 3.32
3486 3716 1.442769 AATTCTGCACCGTGTAGCTG 58.557 50.000 11.47 0.00 29.77 4.24
3487 3717 0.391661 ATTCTGCACCGTGTAGCTGG 60.392 55.000 11.47 0.00 29.77 4.85
3488 3718 3.121030 CTGCACCGTGTAGCTGGC 61.121 66.667 3.51 0.00 0.00 4.85
3489 3719 3.596066 CTGCACCGTGTAGCTGGCT 62.596 63.158 3.51 0.00 0.00 4.75
3490 3720 3.121030 GCACCGTGTAGCTGGCTG 61.121 66.667 5.25 0.00 0.00 4.85
3491 3721 2.656646 CACCGTGTAGCTGGCTGA 59.343 61.111 5.25 0.00 0.00 4.26
3492 3722 1.219124 CACCGTGTAGCTGGCTGAT 59.781 57.895 5.25 0.00 0.00 2.90
3493 3723 1.086067 CACCGTGTAGCTGGCTGATG 61.086 60.000 5.25 0.00 0.00 3.07
3494 3724 1.257750 ACCGTGTAGCTGGCTGATGA 61.258 55.000 5.25 0.00 0.00 2.92
3495 3725 0.807667 CCGTGTAGCTGGCTGATGAC 60.808 60.000 5.25 0.00 0.00 3.06
3496 3726 1.142185 CGTGTAGCTGGCTGATGACG 61.142 60.000 5.25 4.63 0.00 4.35
3497 3727 1.153568 TGTAGCTGGCTGATGACGC 60.154 57.895 5.25 0.00 0.00 5.19
3534 3764 2.738846 CTCGCAAACTCAGCAACATACT 59.261 45.455 0.00 0.00 0.00 2.12
3535 3765 3.920446 TCGCAAACTCAGCAACATACTA 58.080 40.909 0.00 0.00 0.00 1.82
3654 3916 1.665916 CCGCGATCTACATGGGCTG 60.666 63.158 8.23 0.00 0.00 4.85
3660 3922 1.961394 GATCTACATGGGCTGTCCGTA 59.039 52.381 0.00 0.00 39.39 4.02
3666 3928 1.140312 ATGGGCTGTCCGTATCCATT 58.860 50.000 0.00 0.00 34.89 3.16
3667 3929 0.468226 TGGGCTGTCCGTATCCATTC 59.532 55.000 0.00 0.00 38.76 2.67
3672 3934 2.732366 CTGTCCGTATCCATTCTGTCG 58.268 52.381 0.00 0.00 0.00 4.35
3674 3936 2.098607 TGTCCGTATCCATTCTGTCGAC 59.901 50.000 9.11 9.11 0.00 4.20
3676 3938 2.357952 TCCGTATCCATTCTGTCGACTG 59.642 50.000 17.92 16.72 0.00 3.51
3677 3939 2.543861 CCGTATCCATTCTGTCGACTGG 60.544 54.545 20.57 17.18 40.37 4.00
3678 3940 2.099263 CGTATCCATTCTGTCGACTGGT 59.901 50.000 20.57 10.86 40.04 4.00
3679 3941 2.680312 ATCCATTCTGTCGACTGGTG 57.320 50.000 20.57 18.05 40.04 4.17
3747 4023 4.209538 CAATGCCAAGGAAGATATGGTGA 58.790 43.478 0.00 0.00 36.57 4.02
3785 4098 6.640518 AGTCGTTGACACATACATAAGGAAT 58.359 36.000 0.00 0.00 34.60 3.01
3856 4169 3.622166 TCAGCATCTCATTGCAGAAGA 57.378 42.857 0.00 0.00 45.23 2.87
3857 4170 3.946606 TCAGCATCTCATTGCAGAAGAA 58.053 40.909 0.00 0.00 45.23 2.52
3867 4180 5.614308 TCATTGCAGAAGAAGAGACTCAAA 58.386 37.500 5.02 0.00 0.00 2.69
3934 4247 4.379243 AGTTGAGGTCCAGGCGCG 62.379 66.667 0.00 0.00 0.00 6.86
3995 4308 0.443869 GAGCTGCAACGGTACATGTG 59.556 55.000 9.11 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.760047 ATGACGAGCCGGTGCCAC 62.760 66.667 1.90 0.00 38.69 5.01
26 27 2.434185 TTGATGACGAGCCGGTGC 60.434 61.111 1.90 0.00 37.95 5.01
27 28 2.100631 GGTTGATGACGAGCCGGTG 61.101 63.158 1.90 0.00 0.00 4.94
28 29 2.264794 GGTTGATGACGAGCCGGT 59.735 61.111 1.90 0.00 0.00 5.28
31 32 3.195698 GGCGGTTGATGACGAGCC 61.196 66.667 0.00 0.00 42.60 4.70
42 43 1.527370 GCCAATAGAGGAGGCGGTT 59.473 57.895 0.00 0.00 38.86 4.44
43 44 3.231298 GCCAATAGAGGAGGCGGT 58.769 61.111 0.00 0.00 38.86 5.68
61 62 3.270027 CGAAGGCTAATGATGTGGACAA 58.730 45.455 0.00 0.00 0.00 3.18
62 63 2.419990 CCGAAGGCTAATGATGTGGACA 60.420 50.000 0.00 0.00 46.14 4.02
80 81 1.467734 GTAAACAGACGAGCTCTCCGA 59.532 52.381 12.85 0.00 0.00 4.55
81 82 1.469308 AGTAAACAGACGAGCTCTCCG 59.531 52.381 12.85 1.35 0.00 4.63
84 85 1.067495 GCCAGTAAACAGACGAGCTCT 60.067 52.381 12.85 0.00 0.00 4.09
119 121 5.528690 CAGAAAAAGGAGATCATCGCCATTA 59.471 40.000 10.43 0.00 38.94 1.90
126 128 5.064071 GTCCGAACAGAAAAAGGAGATCATC 59.936 44.000 0.00 0.00 0.00 2.92
127 129 4.938226 GTCCGAACAGAAAAAGGAGATCAT 59.062 41.667 0.00 0.00 0.00 2.45
128 130 4.315803 GTCCGAACAGAAAAAGGAGATCA 58.684 43.478 0.00 0.00 0.00 2.92
129 131 3.368236 CGTCCGAACAGAAAAAGGAGATC 59.632 47.826 0.00 0.00 0.00 2.75
137 139 1.345089 TGGGATCGTCCGAACAGAAAA 59.655 47.619 0.00 0.00 37.43 2.29
138 140 0.970640 TGGGATCGTCCGAACAGAAA 59.029 50.000 0.00 0.00 37.43 2.52
143 145 2.202703 CGGTGGGATCGTCCGAAC 60.203 66.667 13.91 0.00 46.05 3.95
146 148 4.570663 GCTCGGTGGGATCGTCCG 62.571 72.222 13.22 13.22 44.76 4.79
147 149 2.240162 AAAGCTCGGTGGGATCGTCC 62.240 60.000 0.00 0.00 35.23 4.79
148 150 1.084370 CAAAGCTCGGTGGGATCGTC 61.084 60.000 0.00 0.00 0.00 4.20
149 151 1.079127 CAAAGCTCGGTGGGATCGT 60.079 57.895 0.00 0.00 0.00 3.73
150 152 1.815421 CCAAAGCTCGGTGGGATCG 60.815 63.158 3.60 0.00 0.00 3.69
174 180 2.231380 ACCCCGTCATGGCTTCCTT 61.231 57.895 0.00 0.00 35.87 3.36
179 185 4.033776 CCACACCCCGTCATGGCT 62.034 66.667 0.00 0.00 35.87 4.75
189 195 4.394712 CCTCTCGGCACCACACCC 62.395 72.222 0.00 0.00 0.00 4.61
200 206 1.065345 TCCGCTCCCTATATCCTCTCG 60.065 57.143 0.00 0.00 0.00 4.04
204 210 1.286553 CTCCTCCGCTCCCTATATCCT 59.713 57.143 0.00 0.00 0.00 3.24
208 214 0.858369 AACCTCCTCCGCTCCCTATA 59.142 55.000 0.00 0.00 0.00 1.31
213 219 2.066999 ATCCAACCTCCTCCGCTCC 61.067 63.158 0.00 0.00 0.00 4.70
226 232 2.361104 GGGAACAGCCGCATCCAA 60.361 61.111 10.82 0.00 37.63 3.53
236 242 3.944250 AATGCAGCCCCGGGAACAG 62.944 63.158 26.32 12.06 0.00 3.16
241 253 0.389025 GATTTAAATGCAGCCCCGGG 59.611 55.000 15.80 15.80 0.00 5.73
245 257 0.594796 CCGCGATTTAAATGCAGCCC 60.595 55.000 8.23 0.00 0.00 5.19
246 258 0.380378 TCCGCGATTTAAATGCAGCC 59.620 50.000 8.23 0.00 0.00 4.85
247 259 2.046313 CATCCGCGATTTAAATGCAGC 58.954 47.619 8.23 7.51 0.00 5.25
248 260 2.290367 TCCATCCGCGATTTAAATGCAG 59.710 45.455 8.23 2.92 0.00 4.41
249 261 2.293170 TCCATCCGCGATTTAAATGCA 58.707 42.857 8.23 0.00 0.00 3.96
251 263 3.825308 CCATCCATCCGCGATTTAAATG 58.175 45.455 8.23 4.01 0.00 2.32
252 264 2.228822 GCCATCCATCCGCGATTTAAAT 59.771 45.455 8.23 0.00 0.00 1.40
259 271 4.240103 CCTGCCATCCATCCGCGA 62.240 66.667 8.23 0.00 0.00 5.87
262 274 4.240103 TCGCCTGCCATCCATCCG 62.240 66.667 0.00 0.00 0.00 4.18
265 277 3.882326 CCCTCGCCTGCCATCCAT 61.882 66.667 0.00 0.00 0.00 3.41
282 302 2.442087 GCCACCCACCATTAGGCC 60.442 66.667 0.00 0.00 39.42 5.19
283 303 1.754234 CTGCCACCCACCATTAGGC 60.754 63.158 0.00 0.00 45.41 3.93
285 305 0.744414 CGTCTGCCACCCACCATTAG 60.744 60.000 0.00 0.00 0.00 1.73
294 314 4.736896 GTCCGTCCGTCTGCCACC 62.737 72.222 0.00 0.00 0.00 4.61
296 316 3.680786 CTGTCCGTCCGTCTGCCA 61.681 66.667 0.00 0.00 0.00 4.92
297 317 4.436998 CCTGTCCGTCCGTCTGCC 62.437 72.222 0.00 0.00 0.00 4.85
312 332 0.613012 AACCTACTCCGGCGTTACCT 60.613 55.000 0.59 0.00 35.61 3.08
316 336 1.602327 GAGGAACCTACTCCGGCGTT 61.602 60.000 0.59 0.00 40.75 4.84
317 337 2.036890 AGGAACCTACTCCGGCGT 59.963 61.111 6.01 1.16 40.75 5.68
319 339 1.817209 CTGAGGAACCTACTCCGGC 59.183 63.158 0.00 0.00 40.75 6.13
345 365 3.459598 CCTCCTCCCTCCAATAAACATGA 59.540 47.826 0.00 0.00 0.00 3.07
346 366 3.459598 TCCTCCTCCCTCCAATAAACATG 59.540 47.826 0.00 0.00 0.00 3.21
354 374 1.064825 GTTTGTCCTCCTCCCTCCAA 58.935 55.000 0.00 0.00 0.00 3.53
392 412 0.591659 GTTTCTTGGTTCACGCCTCC 59.408 55.000 0.00 0.00 0.00 4.30
396 416 1.370051 GCCGTTTCTTGGTTCACGC 60.370 57.895 0.00 0.00 0.00 5.34
401 428 0.036306 ATCCTCGCCGTTTCTTGGTT 59.964 50.000 0.00 0.00 0.00 3.67
405 432 1.745489 GCCATCCTCGCCGTTTCTT 60.745 57.895 0.00 0.00 0.00 2.52
406 433 2.125106 GCCATCCTCGCCGTTTCT 60.125 61.111 0.00 0.00 0.00 2.52
410 437 2.203070 GAATGCCATCCTCGCCGT 60.203 61.111 0.00 0.00 0.00 5.68
437 464 1.741770 GCCGACATTGAAGAGGCGT 60.742 57.895 0.00 0.00 38.28 5.68
442 469 0.976641 ACTGGAGCCGACATTGAAGA 59.023 50.000 0.00 0.00 0.00 2.87
450 477 0.108756 GACCTTACACTGGAGCCGAC 60.109 60.000 0.00 0.00 0.00 4.79
451 478 1.592400 CGACCTTACACTGGAGCCGA 61.592 60.000 0.00 0.00 0.00 5.54
454 481 1.805945 CGCGACCTTACACTGGAGC 60.806 63.158 0.00 0.00 0.00 4.70
506 533 1.014564 GTCCTTTCCTGTCCGAAGCG 61.015 60.000 0.00 0.00 0.00 4.68
507 534 1.014564 CGTCCTTTCCTGTCCGAAGC 61.015 60.000 0.00 0.00 0.00 3.86
508 535 0.317479 ACGTCCTTTCCTGTCCGAAG 59.683 55.000 0.00 0.00 0.00 3.79
509 536 0.032952 CACGTCCTTTCCTGTCCGAA 59.967 55.000 0.00 0.00 0.00 4.30
510 537 1.663739 CACGTCCTTTCCTGTCCGA 59.336 57.895 0.00 0.00 0.00 4.55
511 538 1.374252 CCACGTCCTTTCCTGTCCG 60.374 63.158 0.00 0.00 0.00 4.79
512 539 0.320508 GACCACGTCCTTTCCTGTCC 60.321 60.000 0.00 0.00 0.00 4.02
513 540 0.391597 TGACCACGTCCTTTCCTGTC 59.608 55.000 0.00 0.00 0.00 3.51
514 541 0.393077 CTGACCACGTCCTTTCCTGT 59.607 55.000 0.00 0.00 0.00 4.00
515 542 0.320771 CCTGACCACGTCCTTTCCTG 60.321 60.000 0.00 0.00 0.00 3.86
516 543 0.763223 ACCTGACCACGTCCTTTCCT 60.763 55.000 0.00 0.00 0.00 3.36
517 544 0.108019 AACCTGACCACGTCCTTTCC 59.892 55.000 0.00 0.00 0.00 3.13
518 545 1.226746 CAACCTGACCACGTCCTTTC 58.773 55.000 0.00 0.00 0.00 2.62
519 546 0.544697 ACAACCTGACCACGTCCTTT 59.455 50.000 0.00 0.00 0.00 3.11
520 547 0.106149 GACAACCTGACCACGTCCTT 59.894 55.000 0.00 0.00 0.00 3.36
521 548 1.746517 GACAACCTGACCACGTCCT 59.253 57.895 0.00 0.00 0.00 3.85
522 549 1.663702 CGACAACCTGACCACGTCC 60.664 63.158 0.00 0.00 0.00 4.79
523 550 1.663702 CCGACAACCTGACCACGTC 60.664 63.158 0.00 0.00 0.00 4.34
524 551 2.083835 CTCCGACAACCTGACCACGT 62.084 60.000 0.00 0.00 0.00 4.49
525 552 1.372997 CTCCGACAACCTGACCACG 60.373 63.158 0.00 0.00 0.00 4.94
526 553 1.004918 CCTCCGACAACCTGACCAC 60.005 63.158 0.00 0.00 0.00 4.16
527 554 2.879233 GCCTCCGACAACCTGACCA 61.879 63.158 0.00 0.00 0.00 4.02
528 555 2.047179 GCCTCCGACAACCTGACC 60.047 66.667 0.00 0.00 0.00 4.02
529 556 1.021390 CATGCCTCCGACAACCTGAC 61.021 60.000 0.00 0.00 0.00 3.51
530 557 1.296392 CATGCCTCCGACAACCTGA 59.704 57.895 0.00 0.00 0.00 3.86
531 558 2.401766 GCATGCCTCCGACAACCTG 61.402 63.158 6.36 0.00 0.00 4.00
532 559 2.045926 GCATGCCTCCGACAACCT 60.046 61.111 6.36 0.00 0.00 3.50
533 560 1.750399 ATGCATGCCTCCGACAACC 60.750 57.895 16.68 0.00 0.00 3.77
534 561 1.026182 TCATGCATGCCTCCGACAAC 61.026 55.000 22.25 0.00 0.00 3.32
535 562 1.026182 GTCATGCATGCCTCCGACAA 61.026 55.000 22.25 0.00 0.00 3.18
536 563 1.450134 GTCATGCATGCCTCCGACA 60.450 57.895 22.25 0.00 0.00 4.35
537 564 1.434622 CTGTCATGCATGCCTCCGAC 61.435 60.000 22.25 15.72 0.00 4.79
538 565 1.153309 CTGTCATGCATGCCTCCGA 60.153 57.895 22.25 3.17 0.00 4.55
539 566 2.831366 GCTGTCATGCATGCCTCCG 61.831 63.158 22.25 11.49 0.00 4.63
540 567 2.831366 CGCTGTCATGCATGCCTCC 61.831 63.158 22.25 9.76 0.00 4.30
541 568 2.713770 CGCTGTCATGCATGCCTC 59.286 61.111 22.25 14.23 0.00 4.70
542 569 2.827190 CCGCTGTCATGCATGCCT 60.827 61.111 22.25 1.31 0.00 4.75
543 570 3.117175 GACCGCTGTCATGCATGCC 62.117 63.158 22.25 11.84 41.37 4.40
544 571 2.110967 AGACCGCTGTCATGCATGC 61.111 57.895 22.25 11.82 44.33 4.06
545 572 1.712018 CCAGACCGCTGTCATGCATG 61.712 60.000 21.07 21.07 44.33 4.06
546 573 1.450848 CCAGACCGCTGTCATGCAT 60.451 57.895 11.07 0.00 44.33 3.96
547 574 2.046988 CCAGACCGCTGTCATGCA 60.047 61.111 11.07 0.00 44.33 3.96
548 575 2.046892 ACCAGACCGCTGTCATGC 60.047 61.111 11.07 0.00 44.33 4.06
549 576 1.016130 GTGACCAGACCGCTGTCATG 61.016 60.000 11.07 6.00 44.33 3.07
550 577 1.188219 AGTGACCAGACCGCTGTCAT 61.188 55.000 11.07 0.00 44.33 3.06
551 578 1.806461 GAGTGACCAGACCGCTGTCA 61.806 60.000 11.07 0.00 44.33 3.58
552 579 1.080434 GAGTGACCAGACCGCTGTC 60.080 63.158 0.00 0.00 40.63 3.51
553 580 1.832608 TGAGTGACCAGACCGCTGT 60.833 57.895 0.00 0.00 40.63 4.40
554 581 1.373497 GTGAGTGACCAGACCGCTG 60.373 63.158 0.00 0.00 41.93 5.18
555 582 1.399744 TTGTGAGTGACCAGACCGCT 61.400 55.000 0.00 0.00 0.00 5.52
556 583 0.946221 CTTGTGAGTGACCAGACCGC 60.946 60.000 0.00 0.00 0.00 5.68
557 584 0.946221 GCTTGTGAGTGACCAGACCG 60.946 60.000 0.00 0.00 0.00 4.79
558 585 0.603975 GGCTTGTGAGTGACCAGACC 60.604 60.000 0.00 0.00 0.00 3.85
559 586 0.603975 GGGCTTGTGAGTGACCAGAC 60.604 60.000 0.00 0.00 0.00 3.51
560 587 1.754745 GGGCTTGTGAGTGACCAGA 59.245 57.895 0.00 0.00 0.00 3.86
561 588 1.302832 GGGGCTTGTGAGTGACCAG 60.303 63.158 0.00 0.00 0.00 4.00
562 589 1.426251 ATGGGGCTTGTGAGTGACCA 61.426 55.000 0.00 0.00 0.00 4.02
563 590 0.962356 CATGGGGCTTGTGAGTGACC 60.962 60.000 0.00 0.00 0.00 4.02
564 591 0.250901 ACATGGGGCTTGTGAGTGAC 60.251 55.000 0.00 0.00 0.00 3.67
565 592 0.478072 AACATGGGGCTTGTGAGTGA 59.522 50.000 0.00 0.00 0.00 3.41
566 593 1.000060 CAAACATGGGGCTTGTGAGTG 60.000 52.381 0.00 0.00 0.00 3.51
567 594 1.331214 CAAACATGGGGCTTGTGAGT 58.669 50.000 0.00 0.00 0.00 3.41
568 595 0.037975 GCAAACATGGGGCTTGTGAG 60.038 55.000 0.00 0.00 0.00 3.51
569 596 0.469705 AGCAAACATGGGGCTTGTGA 60.470 50.000 0.00 0.00 33.21 3.58
570 597 0.393820 AAGCAAACATGGGGCTTGTG 59.606 50.000 16.67 0.00 45.44 3.33
571 598 0.681175 GAAGCAAACATGGGGCTTGT 59.319 50.000 20.69 3.18 47.00 3.16
572 599 0.037046 GGAAGCAAACATGGGGCTTG 60.037 55.000 20.69 9.32 47.00 4.01
574 601 0.252375 ATGGAAGCAAACATGGGGCT 60.252 50.000 0.00 0.00 40.14 5.19
575 602 0.614812 AATGGAAGCAAACATGGGGC 59.385 50.000 0.00 0.00 0.00 5.80
576 603 3.244491 TGAAAATGGAAGCAAACATGGGG 60.244 43.478 0.00 0.00 0.00 4.96
577 604 4.005487 TGAAAATGGAAGCAAACATGGG 57.995 40.909 0.00 0.00 0.00 4.00
578 605 5.701750 TCAATGAAAATGGAAGCAAACATGG 59.298 36.000 0.00 0.00 0.00 3.66
579 606 6.788684 TCAATGAAAATGGAAGCAAACATG 57.211 33.333 0.00 0.00 0.00 3.21
580 607 7.804843 TTTCAATGAAAATGGAAGCAAACAT 57.195 28.000 5.87 0.00 0.00 2.71
581 608 7.201714 CCTTTTCAATGAAAATGGAAGCAAACA 60.202 33.333 19.84 0.00 40.14 2.83
582 609 7.012232 TCCTTTTCAATGAAAATGGAAGCAAAC 59.988 33.333 24.07 0.00 40.14 2.93
583 610 7.012232 GTCCTTTTCAATGAAAATGGAAGCAAA 59.988 33.333 26.07 11.85 40.14 3.68
584 611 6.482973 GTCCTTTTCAATGAAAATGGAAGCAA 59.517 34.615 26.07 12.31 40.14 3.91
585 612 5.990996 GTCCTTTTCAATGAAAATGGAAGCA 59.009 36.000 26.07 12.55 40.14 3.91
586 613 5.119125 CGTCCTTTTCAATGAAAATGGAAGC 59.881 40.000 26.07 18.89 40.14 3.86
587 614 5.119125 GCGTCCTTTTCAATGAAAATGGAAG 59.881 40.000 27.00 27.00 40.14 3.46
588 615 4.987912 GCGTCCTTTTCAATGAAAATGGAA 59.012 37.500 26.07 15.70 40.14 3.53
589 616 4.280677 AGCGTCCTTTTCAATGAAAATGGA 59.719 37.500 23.23 23.23 40.14 3.41
590 617 4.559153 AGCGTCCTTTTCAATGAAAATGG 58.441 39.130 19.84 20.38 40.14 3.16
591 618 4.321745 CGAGCGTCCTTTTCAATGAAAATG 59.678 41.667 19.84 17.09 40.14 2.32
592 619 4.475944 CGAGCGTCCTTTTCAATGAAAAT 58.524 39.130 19.84 5.75 40.14 1.82
593 620 3.304391 CCGAGCGTCCTTTTCAATGAAAA 60.304 43.478 18.68 18.68 38.90 2.29
594 621 2.225491 CCGAGCGTCCTTTTCAATGAAA 59.775 45.455 4.03 4.03 0.00 2.69
595 622 1.804151 CCGAGCGTCCTTTTCAATGAA 59.196 47.619 0.00 0.00 0.00 2.57
596 623 1.001520 TCCGAGCGTCCTTTTCAATGA 59.998 47.619 0.00 0.00 0.00 2.57
597 624 1.128692 GTCCGAGCGTCCTTTTCAATG 59.871 52.381 0.00 0.00 0.00 2.82
598 625 1.439679 GTCCGAGCGTCCTTTTCAAT 58.560 50.000 0.00 0.00 0.00 2.57
599 626 0.601841 GGTCCGAGCGTCCTTTTCAA 60.602 55.000 0.00 0.00 0.00 2.69
600 627 1.005394 GGTCCGAGCGTCCTTTTCA 60.005 57.895 0.00 0.00 0.00 2.69
601 628 2.092882 CGGTCCGAGCGTCCTTTTC 61.093 63.158 4.91 0.00 33.95 2.29
602 629 2.048503 CGGTCCGAGCGTCCTTTT 60.049 61.111 4.91 0.00 33.95 2.27
603 630 4.065281 CCGGTCCGAGCGTCCTTT 62.065 66.667 14.39 0.00 37.40 3.11
607 634 4.047059 TTGACCGGTCCGAGCGTC 62.047 66.667 31.19 12.36 37.40 5.19
608 635 4.353437 GTTGACCGGTCCGAGCGT 62.353 66.667 31.19 1.32 37.40 5.07
618 645 0.388134 CCTGTACTCACCGTTGACCG 60.388 60.000 0.00 0.00 0.00 4.79
619 646 0.963962 TCCTGTACTCACCGTTGACC 59.036 55.000 0.00 0.00 0.00 4.02
620 647 1.336609 GGTCCTGTACTCACCGTTGAC 60.337 57.143 0.00 0.00 0.00 3.18
621 648 0.963962 GGTCCTGTACTCACCGTTGA 59.036 55.000 0.00 0.00 0.00 3.18
622 649 0.677288 TGGTCCTGTACTCACCGTTG 59.323 55.000 0.00 0.00 32.27 4.10
623 650 1.416243 TTGGTCCTGTACTCACCGTT 58.584 50.000 0.00 0.00 32.27 4.44
624 651 1.416243 TTTGGTCCTGTACTCACCGT 58.584 50.000 0.00 0.00 32.27 4.83
625 652 2.140717 GTTTTGGTCCTGTACTCACCG 58.859 52.381 0.00 0.00 32.27 4.94
626 653 2.876550 GTGTTTTGGTCCTGTACTCACC 59.123 50.000 0.00 0.00 0.00 4.02
627 654 3.537580 TGTGTTTTGGTCCTGTACTCAC 58.462 45.455 0.00 0.00 0.00 3.51
628 655 3.916359 TGTGTTTTGGTCCTGTACTCA 57.084 42.857 0.00 0.00 0.00 3.41
629 656 4.387862 CGTATGTGTTTTGGTCCTGTACTC 59.612 45.833 0.00 0.00 0.00 2.59
630 657 4.039488 TCGTATGTGTTTTGGTCCTGTACT 59.961 41.667 0.00 0.00 0.00 2.73
631 658 4.309099 TCGTATGTGTTTTGGTCCTGTAC 58.691 43.478 0.00 0.00 0.00 2.90
632 659 4.603989 TCGTATGTGTTTTGGTCCTGTA 57.396 40.909 0.00 0.00 0.00 2.74
633 660 3.478857 TCGTATGTGTTTTGGTCCTGT 57.521 42.857 0.00 0.00 0.00 4.00
634 661 3.058501 GGTTCGTATGTGTTTTGGTCCTG 60.059 47.826 0.00 0.00 0.00 3.86
635 662 3.143728 GGTTCGTATGTGTTTTGGTCCT 58.856 45.455 0.00 0.00 0.00 3.85
636 663 2.096119 CGGTTCGTATGTGTTTTGGTCC 60.096 50.000 0.00 0.00 0.00 4.46
637 664 2.663606 GCGGTTCGTATGTGTTTTGGTC 60.664 50.000 0.00 0.00 0.00 4.02
638 665 1.264826 GCGGTTCGTATGTGTTTTGGT 59.735 47.619 0.00 0.00 0.00 3.67
639 666 1.264557 TGCGGTTCGTATGTGTTTTGG 59.735 47.619 0.00 0.00 0.00 3.28
640 667 2.303537 GTGCGGTTCGTATGTGTTTTG 58.696 47.619 0.00 0.00 0.00 2.44
641 668 1.070443 CGTGCGGTTCGTATGTGTTTT 60.070 47.619 0.00 0.00 0.00 2.43
642 669 0.509499 CGTGCGGTTCGTATGTGTTT 59.491 50.000 0.00 0.00 0.00 2.83
643 670 1.286354 CCGTGCGGTTCGTATGTGTT 61.286 55.000 1.93 0.00 0.00 3.32
644 671 1.735198 CCGTGCGGTTCGTATGTGT 60.735 57.895 1.93 0.00 0.00 3.72
645 672 3.077705 CCGTGCGGTTCGTATGTG 58.922 61.111 1.93 0.00 0.00 3.21
656 683 4.789075 ATTCGTCCGGACCGTGCG 62.789 66.667 28.52 16.78 0.00 5.34
657 684 2.884207 GATTCGTCCGGACCGTGC 60.884 66.667 28.52 12.28 0.00 5.34
658 685 2.578713 CGATTCGTCCGGACCGTG 60.579 66.667 28.52 15.05 0.00 4.94
659 686 2.747460 TCGATTCGTCCGGACCGT 60.747 61.111 28.52 14.55 0.00 4.83
660 687 2.277756 GTCGATTCGTCCGGACCG 60.278 66.667 28.52 24.17 0.00 4.79
661 688 2.012902 ATGGTCGATTCGTCCGGACC 62.013 60.000 28.52 13.27 37.84 4.46
662 689 0.664761 TATGGTCGATTCGTCCGGAC 59.335 55.000 25.28 25.28 37.84 4.79
663 690 1.538512 GATATGGTCGATTCGTCCGGA 59.461 52.381 15.76 0.00 37.84 5.14
664 691 1.268625 TGATATGGTCGATTCGTCCGG 59.731 52.381 15.76 0.00 37.84 5.14
665 692 2.699251 TGATATGGTCGATTCGTCCG 57.301 50.000 15.76 0.00 37.84 4.79
666 693 3.921021 GTGATGATATGGTCGATTCGTCC 59.079 47.826 14.31 14.31 35.78 4.79
667 694 3.604198 CGTGATGATATGGTCGATTCGTC 59.396 47.826 5.89 0.00 0.00 4.20
668 695 3.004419 ACGTGATGATATGGTCGATTCGT 59.996 43.478 5.89 0.00 0.00 3.85
669 696 3.361940 CACGTGATGATATGGTCGATTCG 59.638 47.826 10.90 0.00 0.00 3.34
670 697 4.546570 TCACGTGATGATATGGTCGATTC 58.453 43.478 15.76 0.00 29.99 2.52
671 698 4.584327 TCACGTGATGATATGGTCGATT 57.416 40.909 15.76 0.00 29.99 3.34
672 699 4.278419 TCTTCACGTGATGATATGGTCGAT 59.722 41.667 25.37 0.00 37.11 3.59
673 700 3.630312 TCTTCACGTGATGATATGGTCGA 59.370 43.478 25.37 4.24 37.11 4.20
674 701 3.964909 TCTTCACGTGATGATATGGTCG 58.035 45.455 25.37 0.00 37.11 4.79
675 702 6.662414 TTTTCTTCACGTGATGATATGGTC 57.338 37.500 28.36 0.00 37.11 4.02
698 725 9.443323 AGCCAAATTGTTTGTTACTAAGTTTTT 57.557 25.926 2.22 0.00 38.98 1.94
699 726 8.878769 CAGCCAAATTGTTTGTTACTAAGTTTT 58.121 29.630 2.22 0.00 38.98 2.43
700 727 8.254508 TCAGCCAAATTGTTTGTTACTAAGTTT 58.745 29.630 2.22 0.00 38.98 2.66
701 728 7.777095 TCAGCCAAATTGTTTGTTACTAAGTT 58.223 30.769 2.22 0.00 38.98 2.66
702 729 7.341445 TCAGCCAAATTGTTTGTTACTAAGT 57.659 32.000 2.22 0.00 38.98 2.24
703 730 6.863126 CCTCAGCCAAATTGTTTGTTACTAAG 59.137 38.462 2.22 0.00 38.98 2.18
704 731 6.322712 ACCTCAGCCAAATTGTTTGTTACTAA 59.677 34.615 2.22 0.00 38.98 2.24
705 732 5.830991 ACCTCAGCCAAATTGTTTGTTACTA 59.169 36.000 2.22 0.00 38.98 1.82
706 733 4.649218 ACCTCAGCCAAATTGTTTGTTACT 59.351 37.500 2.22 0.00 38.98 2.24
707 734 4.944048 ACCTCAGCCAAATTGTTTGTTAC 58.056 39.130 2.22 0.00 38.98 2.50
717 744 4.407296 TGGTTTTGTTTACCTCAGCCAAAT 59.593 37.500 0.00 0.00 36.60 2.32
724 751 3.002038 ACCGTGGTTTTGTTTACCTCA 57.998 42.857 0.00 0.00 36.60 3.86
725 752 4.552572 CGTAACCGTGGTTTTGTTTACCTC 60.553 45.833 9.96 0.00 39.31 3.85
729 756 3.274288 ACCGTAACCGTGGTTTTGTTTA 58.726 40.909 9.96 0.00 39.31 2.01
747 774 2.354305 GACCCGTGCGCTATACCG 60.354 66.667 9.73 2.93 0.00 4.02
748 775 1.299926 CTGACCCGTGCGCTATACC 60.300 63.158 9.73 0.00 0.00 2.73
756 787 4.814294 CCTACCGCTGACCCGTGC 62.814 72.222 0.00 0.00 0.00 5.34
840 871 1.605712 CGTTTATGCGAGAGGGGATCC 60.606 57.143 1.92 1.92 0.00 3.36
882 926 3.365265 GTTGCGGCTCTGGGGTTG 61.365 66.667 0.00 0.00 0.00 3.77
885 929 4.697756 TTCGTTGCGGCTCTGGGG 62.698 66.667 0.00 0.00 0.00 4.96
886 930 2.668212 TTTCGTTGCGGCTCTGGG 60.668 61.111 0.00 0.00 0.00 4.45
887 931 2.556287 GTTTCGTTGCGGCTCTGG 59.444 61.111 0.00 0.00 0.00 3.86
888 932 1.781025 TTGGTTTCGTTGCGGCTCTG 61.781 55.000 0.00 0.00 0.00 3.35
893 937 0.868177 GTGGTTTGGTTTCGTTGCGG 60.868 55.000 0.00 0.00 0.00 5.69
912 957 4.125695 GGTCGACTCGGGTTCGGG 62.126 72.222 16.46 0.00 43.72 5.14
915 960 3.278592 AAGCGGTCGACTCGGGTTC 62.279 63.158 22.10 9.83 0.00 3.62
916 961 3.278592 GAAGCGGTCGACTCGGGTT 62.279 63.158 22.10 18.73 0.00 4.11
1000 1045 1.330655 ATCAGGGGAGCGACGAATGT 61.331 55.000 0.00 0.00 0.00 2.71
1206 1289 4.144727 GGCGAGAGGAGGGAGGGA 62.145 72.222 0.00 0.00 0.00 4.20
1266 1353 2.126307 CGCGATGCTAGATCGGGG 60.126 66.667 22.30 11.56 46.29 5.73
1317 1404 1.298667 CAACCCTAACCTGACCCCG 59.701 63.158 0.00 0.00 0.00 5.73
1323 1410 1.740296 CGCGTCCAACCCTAACCTG 60.740 63.158 0.00 0.00 0.00 4.00
1343 1430 3.138128 CAATCCCCCGCCGTTTCC 61.138 66.667 0.00 0.00 0.00 3.13
1364 1451 1.542108 CCATCCTCCTCGAAGCCAATC 60.542 57.143 0.00 0.00 0.00 2.67
1365 1452 0.471617 CCATCCTCCTCGAAGCCAAT 59.528 55.000 0.00 0.00 0.00 3.16
1366 1453 1.907739 CCATCCTCCTCGAAGCCAA 59.092 57.895 0.00 0.00 0.00 4.52
1367 1454 2.735772 GCCATCCTCCTCGAAGCCA 61.736 63.158 0.00 0.00 0.00 4.75
1374 1461 2.252976 CTGCTAAAGCCATCCTCCTC 57.747 55.000 0.00 0.00 41.18 3.71
1409 1496 2.674852 CAACACCATGAATCTCAGACGG 59.325 50.000 0.00 0.00 0.00 4.79
1433 1520 3.434319 AGCACAATTCAGGCCGCG 61.434 61.111 0.00 0.00 0.00 6.46
1440 1527 1.155859 AAGGGCCCAGCACAATTCA 59.844 52.632 27.56 0.00 32.33 2.57
1450 1537 1.460255 CTCTCAAACCAAGGGCCCA 59.540 57.895 27.56 0.00 0.00 5.36
1452 1539 1.304464 CCCTCTCAAACCAAGGGCC 60.304 63.158 0.00 0.00 43.21 5.80
1496 1583 2.611974 AAATTAGTTGCAAGGCGACG 57.388 45.000 0.00 0.00 46.58 5.12
1520 1609 5.344743 TTGTATGTTTGCAACCCTTGAAA 57.655 34.783 0.00 0.00 0.00 2.69
1597 1712 5.872617 CGTTCCAAGTTATGTAGTGATGGAA 59.127 40.000 0.00 0.00 41.71 3.53
1613 1734 1.028905 TTCCAACCAAGCGTTCCAAG 58.971 50.000 0.00 0.00 29.93 3.61
1707 1828 3.036084 CACGGTGTCTCGGTGCAC 61.036 66.667 8.80 8.80 39.70 4.57
1724 1845 1.334239 CGATCTACTACAGACTGCGGC 60.334 57.143 1.25 0.00 35.62 6.53
1727 1848 3.547214 GCTCACGATCTACTACAGACTGC 60.547 52.174 1.25 0.00 35.62 4.40
1728 1849 3.874543 AGCTCACGATCTACTACAGACTG 59.125 47.826 0.00 0.00 35.62 3.51
1787 1909 5.111989 TGAAAGCATTCCTCATCTAACTCG 58.888 41.667 0.00 0.00 34.49 4.18
1816 1938 8.499403 AATGAGAAAGCCTTCTAAATGACTAC 57.501 34.615 0.00 0.00 42.19 2.73
1848 1977 9.700831 AGTGTTTAATAAGATAAATCCCAAGCT 57.299 29.630 0.00 0.00 0.00 3.74
1888 2026 7.551585 ACTGATGATAAGACTCCAGTTAGTTG 58.448 38.462 0.00 0.00 31.62 3.16
1900 2039 7.117523 GCAACCATATGAGACTGATGATAAGAC 59.882 40.741 3.65 0.00 0.00 3.01
1903 2042 7.071069 AGCAACCATATGAGACTGATGATAA 57.929 36.000 3.65 0.00 0.00 1.75
2050 2189 1.005097 AGGATGCATTTGCTCACCAGA 59.995 47.619 0.00 0.00 42.66 3.86
2096 2238 7.054491 AGCAACATCAATTGTTCCTTTAACT 57.946 32.000 5.13 0.00 45.55 2.24
2099 2241 6.267471 AGGAAGCAACATCAATTGTTCCTTTA 59.733 34.615 15.09 0.00 44.56 1.85
2137 2282 5.389859 TTTGCCCTAAACTCAATGATGTG 57.610 39.130 0.00 0.00 0.00 3.21
2145 2290 8.189119 AGAATTTACATTTTGCCCTAAACTCA 57.811 30.769 0.00 0.00 0.00 3.41
2154 2299 7.274250 GTCATGTCAGAGAATTTACATTTTGCC 59.726 37.037 0.00 0.00 30.32 4.52
2277 2426 8.634335 TCCAGTTTGATCATAAAATGTTCAGA 57.366 30.769 0.00 0.00 39.40 3.27
2295 2444 9.614792 GTAGGATGTACAAATATTCTCCAGTTT 57.385 33.333 11.08 0.00 0.00 2.66
2308 2461 8.158132 TGTGTTTAGGAATGTAGGATGTACAAA 58.842 33.333 0.00 0.00 0.00 2.83
2353 2506 3.763557 ACCTGGATTGAAACCATCCAT 57.236 42.857 0.00 0.00 42.87 3.41
2357 2510 3.578282 GGAACAACCTGGATTGAAACCAT 59.422 43.478 0.00 0.00 36.79 3.55
2358 2511 2.962421 GGAACAACCTGGATTGAAACCA 59.038 45.455 0.00 0.00 35.41 3.67
2621 2775 1.067295 ACAGAGGAATGGCTGGAACA 58.933 50.000 0.00 0.00 36.47 3.18
2622 2776 1.815003 CAACAGAGGAATGGCTGGAAC 59.185 52.381 0.00 0.00 36.47 3.62
2630 2784 0.453282 CGCAACGCAACAGAGGAATG 60.453 55.000 0.00 0.00 0.00 2.67
2636 2790 1.061729 CACAACGCAACGCAACAGA 59.938 52.632 0.00 0.00 0.00 3.41
2639 2793 0.522495 AGTTCACAACGCAACGCAAC 60.522 50.000 0.00 0.00 36.23 4.17
2640 2794 0.247894 GAGTTCACAACGCAACGCAA 60.248 50.000 0.00 0.00 36.23 4.85
2641 2795 1.350319 GAGTTCACAACGCAACGCA 59.650 52.632 0.00 0.00 36.23 5.24
2642 2796 0.923911 GTGAGTTCACAACGCAACGC 60.924 55.000 7.37 0.00 42.75 4.84
2643 2797 3.127864 GTGAGTTCACAACGCAACG 57.872 52.632 7.37 0.00 42.75 4.10
2662 2818 2.304180 ACCTGTAAACATCAGAGCAGCT 59.696 45.455 0.00 0.00 35.20 4.24
2664 2820 3.859961 CGTACCTGTAAACATCAGAGCAG 59.140 47.826 0.00 0.00 35.20 4.24
2667 2823 4.096311 CGACGTACCTGTAAACATCAGAG 58.904 47.826 0.00 0.00 35.20 3.35
2775 2931 3.428045 GGCCAAAGCATCAGTACACATTC 60.428 47.826 0.00 0.00 42.56 2.67
2778 2934 1.073763 AGGCCAAAGCATCAGTACACA 59.926 47.619 5.01 0.00 42.56 3.72
2780 2936 1.350684 TCAGGCCAAAGCATCAGTACA 59.649 47.619 5.01 0.00 42.56 2.90
2823 2979 0.652592 GTGTGCGCCACATAGATCAC 59.347 55.000 19.85 2.61 46.32 3.06
2867 3027 9.244292 TCATACTACTATACTTCCATCACATCC 57.756 37.037 0.00 0.00 0.00 3.51
2956 3154 5.704515 AGATCAGCAACATATAATCCAGCAC 59.295 40.000 0.00 0.00 0.00 4.40
3019 3228 4.738124 TCTGAAGATGTCGACACAGATTC 58.262 43.478 24.66 21.78 35.41 2.52
3035 3244 1.730501 ACCATCGCACACATCTGAAG 58.269 50.000 0.00 0.00 0.00 3.02
3038 3247 1.135603 CCAAACCATCGCACACATCTG 60.136 52.381 0.00 0.00 0.00 2.90
3097 3309 5.624738 GCCATCCTAGGTTCGGTATATTCTG 60.625 48.000 9.08 0.00 0.00 3.02
3098 3310 4.466726 GCCATCCTAGGTTCGGTATATTCT 59.533 45.833 9.08 0.00 0.00 2.40
3099 3311 4.222145 TGCCATCCTAGGTTCGGTATATTC 59.778 45.833 9.08 0.00 0.00 1.75
3100 3312 4.164981 TGCCATCCTAGGTTCGGTATATT 58.835 43.478 9.08 0.00 0.00 1.28
3101 3313 3.786553 TGCCATCCTAGGTTCGGTATAT 58.213 45.455 9.08 0.00 0.00 0.86
3102 3314 3.247948 TGCCATCCTAGGTTCGGTATA 57.752 47.619 9.08 0.00 0.00 1.47
3108 3320 1.840635 AGAGGTTGCCATCCTAGGTTC 59.159 52.381 9.08 0.00 35.20 3.62
3180 3392 2.097038 GGACACTAGTGCTGCAGCG 61.097 63.158 32.11 20.61 45.83 5.18
3215 3427 5.010617 GTGGTGTGTTTATTCCAATCCAAGT 59.989 40.000 0.00 0.00 0.00 3.16
3216 3428 5.010516 TGTGGTGTGTTTATTCCAATCCAAG 59.989 40.000 0.00 0.00 0.00 3.61
3218 3430 4.474394 TGTGGTGTGTTTATTCCAATCCA 58.526 39.130 0.00 0.00 0.00 3.41
3220 3432 5.705441 TCTCTGTGGTGTGTTTATTCCAATC 59.295 40.000 0.00 0.00 0.00 2.67
3223 3435 4.698201 TCTCTGTGGTGTGTTTATTCCA 57.302 40.909 0.00 0.00 0.00 3.53
3239 3451 3.384146 TGCTCAATCTCTAGCCTTCTCTG 59.616 47.826 0.00 0.00 37.97 3.35
3246 3458 2.159170 AGACGTTGCTCAATCTCTAGCC 60.159 50.000 0.00 0.00 37.97 3.93
3248 3460 3.862267 CCAAGACGTTGCTCAATCTCTAG 59.138 47.826 0.00 0.00 31.64 2.43
3252 3464 1.611673 CCCCAAGACGTTGCTCAATCT 60.612 52.381 0.00 0.00 31.64 2.40
3263 3475 2.989253 GCCCCAAACCCCAAGACG 60.989 66.667 0.00 0.00 0.00 4.18
3309 3524 4.822036 TGTTTCCGATTGGTTTACAGTG 57.178 40.909 0.00 0.00 36.30 3.66
3314 3529 9.197694 CACATTTATTTGTTTCCGATTGGTTTA 57.802 29.630 0.00 0.00 36.30 2.01
3355 3570 7.438459 GGTTTGTAATACTATTGCACGAGAGAT 59.562 37.037 1.05 0.00 0.00 2.75
3356 3571 6.755141 GGTTTGTAATACTATTGCACGAGAGA 59.245 38.462 1.05 0.00 0.00 3.10
3357 3572 6.533723 TGGTTTGTAATACTATTGCACGAGAG 59.466 38.462 1.05 0.00 0.00 3.20
3358 3573 6.399743 TGGTTTGTAATACTATTGCACGAGA 58.600 36.000 1.05 0.00 0.00 4.04
3370 3585 6.131389 GCGTATTTCCGATGGTTTGTAATAC 58.869 40.000 0.00 0.00 0.00 1.89
3384 3599 0.026803 GCTGAGCTTGCGTATTTCCG 59.973 55.000 0.00 0.00 0.00 4.30
3435 3662 2.223144 TGTCAACAAAGTGCGACTATGC 59.777 45.455 0.00 0.00 0.00 3.14
3442 3669 2.290367 TGATCCTTGTCAACAAAGTGCG 59.710 45.455 0.00 0.00 35.15 5.34
3444 3671 5.694231 TGATGATCCTTGTCAACAAAGTG 57.306 39.130 0.00 0.00 35.15 3.16
3445 3672 6.713762 TTTGATGATCCTTGTCAACAAAGT 57.286 33.333 7.83 0.00 42.30 2.66
3446 3673 8.086522 AGAATTTGATGATCCTTGTCAACAAAG 58.913 33.333 14.52 0.00 46.69 2.77
3496 3726 4.395583 GTCAAGTGGCGCTGCTGC 62.396 66.667 7.64 5.34 0.00 5.25
3497 3727 2.667536 AGTCAAGTGGCGCTGCTG 60.668 61.111 7.64 0.00 0.00 4.41
3504 3734 0.235926 GAGTTTGCGAGTCAAGTGGC 59.764 55.000 0.00 0.00 35.84 5.01
3640 3899 0.753262 ACGGACAGCCCATGTAGATC 59.247 55.000 0.00 0.00 44.17 2.75
3654 3916 2.358267 AGTCGACAGAATGGATACGGAC 59.642 50.000 19.50 0.00 43.62 4.79
3666 3928 1.046472 AACACCCACCAGTCGACAGA 61.046 55.000 19.50 0.00 0.00 3.41
3667 3929 0.179056 AAACACCCACCAGTCGACAG 60.179 55.000 19.50 10.04 0.00 3.51
3672 3934 1.308998 CTGTCAAACACCCACCAGTC 58.691 55.000 0.00 0.00 0.00 3.51
3674 3936 1.762708 AACTGTCAAACACCCACCAG 58.237 50.000 0.00 0.00 0.00 4.00
3676 3938 2.034179 GCTAAACTGTCAAACACCCACC 59.966 50.000 0.00 0.00 0.00 4.61
3677 3939 2.685897 TGCTAAACTGTCAAACACCCAC 59.314 45.455 0.00 0.00 0.00 4.61
3678 3940 3.006112 TGCTAAACTGTCAAACACCCA 57.994 42.857 0.00 0.00 0.00 4.51
3679 3941 4.109766 GTTTGCTAAACTGTCAAACACCC 58.890 43.478 14.35 0.00 45.15 4.61
3702 3969 8.908786 TTGTCAAGACTTGTCATTCTTAATCT 57.091 30.769 14.53 0.00 30.67 2.40
3747 4023 8.308931 TGTGTCAACGACTTAGAGGTAATAAAT 58.691 33.333 0.00 0.00 33.15 1.40
3785 4098 1.490490 ACTGGGAAAAGACTCAGCACA 59.510 47.619 0.00 0.00 41.58 4.57
3856 4169 6.349777 CGGTCTCTTGAGTATTTGAGTCTCTT 60.350 42.308 0.65 0.00 0.00 2.85
3857 4170 5.124776 CGGTCTCTTGAGTATTTGAGTCTCT 59.875 44.000 0.65 0.00 0.00 3.10
3867 4180 1.320344 TGCCGCGGTCTCTTGAGTAT 61.320 55.000 28.70 0.00 0.00 2.12
3903 4216 0.179004 TCAACTGGTGCCCGAACATT 60.179 50.000 0.00 0.00 0.00 2.71
3934 4247 3.106407 GCACCTGACGTCGCTCAC 61.106 66.667 11.62 0.00 0.00 3.51
3995 4308 1.080025 CCTCACCTCCGTTCGTTCC 60.080 63.158 0.00 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.