>input_sequence_39393
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----A-----------------------CATTCGTCGCTCCCCTGATCCATCCGGCGACGCGGCGGAGCAAGGAAGGAAC
CAAGGCTCGAGCAGCGGGCG---------------GCCGGAGAGATGGCGGAGAACCCGCAGCTGTTCGGGAACGGGATG
CCCGTGCCCTTCCACGGCGAGATGTTCGTCCTCGCCCGCGACGGCGTCGAGTTCCACGTCGACAAGATCCCCTCGTGCGT
AATCCCCTTCCCTCCC----TCCTCTCGCCCCGGTTGCTTTCGCCTCGCTTGGACAGATTGATATTTTTTTTCCCCGATC
TAGCATCGCGGGCGATCGCGCTGTCTGGATGGGGATTTTTAATCGGGGTCAGGTTAGGGTTGGACGCGAGGAAACGGCGG
GGGATTGGTTGATTGGCTTCGAGGAGGATGGCTTTAGCAGCTCTTCGGAATTGGCCCGTCTGAGATTCATGGTGTTGCGC
GCGGCCTGAATTGTGCTGGGCCCTTGGTTTGAGAGGGGAATTCTGCCCTTCAGTGGCTGGCACGTCGCCTTGCAACTAAT
TT--AGCTT-----------------------TTCA--AGGGTTGCAAACATACAATTTC-GAAGGCTTGATGTGTTGGT
GATGCGTGGTTGACCTGTATGTATAGCTTGTTTCCATC------ACTACATAACTTGGAACGCTTGGTTGGAACTGCTAG
GTGACAAGGAGAAAAATAATGCTGCTGCTGCATATTGTATGGTTTGGGATTTATTTAGGAACGGTTGGTGCACCGAGACA
CCGTGCCGCAGTCTGTAGTAGATCGTGAGCTACAAATGCGGCACCCATGCATTTATCTCGTTGTGCA-CGAGTTAGATGA
GGAATGCTTTCATTGTTG-------TAGTCATTTAGAAGGCTTTCTCATTATGTTCAGCTTGGGATTTATCTT-------
-ATTAAACACTG-TTTGCATAAAAACA-ACTAACTGGAGTCTTATCATCAGTCTCATATGGTTGCTTCGCCTGTTCTCAG
GGCGCCCGGCGGTCACGCAAAAACAAAGGGCACCATATACCTTTCTAACATAAGGATGGTGTTTGTCGCCGCCAAGCCTG
TTGGGAACTTCTTTGCCTTTGATATGCCTCTGGTGAGCAAATGCATCCTGAAATGACCCTAT---CTCCTGTGAATCAGT
TAAAGGAACAATTGATGTTGCTTCCTTAATAAT---TTCATCACATCATTGAGTTTAGGGCAAAATGTAAATTCTCTGAC
ATGACAAACTTGTTTGCAGCTGTACGTGCACGGTGAGAAGTTCAACCAACCGATATTTCACTGCAACAATATTTCTGGAT
TCGTTGAGCCGGTGAG----TTGTCTCTGAACATTTTATGATCA----AACTGGAGAATATTTGTACATCCTACATTCCT
AAACACACATACGAAGATATTAACCATGGAT-GGTTTCAATCCAGGTTGTTCCAGAAAGCCAGAACAGGGCTCTGTACTC
GACCCACACCTTCAAGATCTTGTTCAAGGAAGGTGGATGTGGTACCTTTGTGCCACTCTTCCTGAACCTGATCACATCAG
TGCGGCGCTACAATCAGTTTGAAGCCCAGCCCGCTACTGTGCCCCGTGTGGACCCCATGCAGGCAGCGCAAACTCCTGTC
GACGACATGATGCGCCATGCGTGAGTGCACCAATCTGACATTTCCCAATCTCCTTGTTCCAGCCATTCCTCTGTTGCGTT
GCGT--TGTGAACTCACAGCTGCTCTGATGTTTACAGGTACGTCGATCCACATGATCCTACCAAGATCTTCCTCCAGCAG
CCCGCAGCGGAATCCCAGCTGAGGAGGAGAAACTACCACGGCCCCGCTGAGAATGTGTACTGATGCTTTGGCCTGATTGC
AAAGTGCATGTGTTTTCGGTGATC----TATGTGGCGCACACGAGCAATATATCTGTTTGGTGTCAGG------------
----------ATGTGATGGAAGTATAGTAGTATGAT----------------TGTGTGTTCCACTGTTGGATTCAATCCA
GATCTAAGTATAATAATGTACATACAAGGTGATGTGCTGGATTATATGTTGCTGATCTCGTCGTATA-----------GA
GTTATAAAACTGGTCTGAATGC----------------------------------------------------------
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>chr5D_1_TraesCS5D01G303600
GCCGGCATGGGCCAGCGAGGACGGTGGCACCGGCTCGTCATCAACCGCCTCCTCTATTGGCTTGTCCACATCATTAGCCT
TCGGA-GAGCTCGTCTGTTTACTGGCCTGCCAGCCGGCCGTAATGGCGATGATCTCCTTTTTCTGTTCGGACGA----TC
CCACCGAGCTTTGGAGCTCAAGGAAGCCATGACGGGGTGTGGTGCCGAGAGGATATAGGGAGCGGAGGAGGTTGGATGCG
GC------TGTTCCCGGGGCTGCATTTAAATCGCGGATGGATGGCAGG--------CGAGGGGCCTAATGGTGGGTGGCA
GACGGACGGACAGGTAACGCCGGAGTAGGTTCCTCAGCAACCGCTCATGTTTATTGGAGGGAGGAGGACAAACGGGTTGC
CGTTTGGACGCGGAGG-------CGTGAACCAAGAAACGGCGAGGATGGCATTCTCGGCCGGCACGCCTCTTCAATGTCG
GCTCCAGTGTAAGGTCGCGTCCGCTCTGTGCCGGCATGAATGCGGCGCTGGCCGCTTCGGACAGGAAAGGACGTGGTCAG
GTTGTCGGAGGCATGCATGACAGCGGTCTGGTCACTCACAAGCCCCATGTTTGCTTCCATTTTCATTGAAAAGGACGCTC
GGACCGGTCAACGGTGAGTACAGGACCAAAACACATACGAACCGCACGGTCCGGACGAATCGACCATATCATCACGTGAA
GAAAAAAAACTTAGTAACAAACAATTTGGCTGAGGTAAACAAAACCACGGTTACG----GTATAGCGCACGGGTCAGCGG
TAGGGACACGCTTCGGCCCGCGTCTGGAACGCTCTCCGCCTCGCACGAGAGATCGAGCGGTCCACGCGATGGATCCCCTC
TCGCATAA-------------ACGCGACCACCCCCAACCCAACCCCAACCCCAGAGCCGCAACGAAACCAAA-CCACCCG
AACCCGAGTCGACCGCTTCGAGAAGCGTCGCCACCAAGGCACCCAGACCCCAGACCTCCTCCTCCCGGGAATCGGAACCG
CGTCA-----------------------CATTCGTCGCTCCCCTGATCCATCCGGCGACGCGGCGGAGCAAGGAAGGAAC
CAAGGCTCGAGCAGCGGGCG---------------GCCGGAGAGATGGCGGAGAACCCGCAGCTGTTCGGGAACGGGATG
CCCGTGCCCTTCCACGGCGAGATGTTCGTCCTCGCCCGCGACGGCGTCGAGTTCCACGTCGACAAGATCCCCTCGTGCGT
AATCCCCTTCCCTCCC----TCCTCTCGCCCCGGTTGCTTTCGCCTCGCTTGGACAGATTGATATTTTTTTTCCCCGATC
TAGCATCGCGGGCGATCGCGCTGTCTGGATGGGGATTTTTAATCGGGGTCAGGTTAGGGTTGGACGCGAGGAAACGGCGG
GGGATTGGTTGATTGGCTTCGAGGAGGATGGCTTTAGCAGCTCTTCGGAATTGGCCCGTCTGAGATTCATGGTGTTGCGC
GCGGCCTGAATTGTGCTGGGCCCTTGGTTTGAGAGGGGAATTCTGCCCTTCAGTGGCTGGCACGTCGCCTTGCAACTAAT
TT--AGCTT-----------------------TTCA--AGGGTTGCAAACATACAATTTC-GAAGGCTTGATGTGTTGGT
GATGCGTGGTTGACCTGTATGTATAGCTTGTTTCCATC------ACTACATAACTTGGAACGCTTGGTTGGAACTGCTAG
GTGACAAGGAGAAAAATAATGCTGCTGCTGCATATTGTATGGTTTGGGATTTATTTAGGAACGGTTGGTGCACCGAGACA
CCGTGCCGCAGTCTGTAGTAGATCGTGAGCTACAAATGCGGCACCCATGCATTTATCTCGTTGTGCA-CGAGTTAGATGA
GGAATGCTTTCATTGTTG-------TAGTCATTTAGAAGGCTTTCTCATTATGTTCAGCTTGGGATTTATCTT-------
-ATTAAACACTG-TTTGCATAAAAACA-ACTAACTGGAGTCTTATCATCAGTCTCATATGGTTGCTTCGCCTGTTCTCAG
GGCGCCCGGCGGTCACGCAAAAACAAAGGGCACCATATACCTTTCTAACATAAGGATGGTGTTTGTCGCCGCCAAGCCTG
TTGGGAACTTCTTTGCCTTTGATATGCCTCTGGTGAGCAAATGCATCCTGAAATGACCCTAT---CTCCTGTGAATCAGT
TAAAGGAACAATTGATGTTGCTTCCTTAATAAT---TTCATCACATCATTGAGTTTAGGGCAAAATGTAAATTCTCTGAC
ATGACAAACTTGTTTGCAGCTGTACGTGCACGGTGAGAAGTTCAACCAACCGATATTTCACTGCAACAATATTTCTGGAT
TCGTTGAGCCGGTGAG----TTGTCTCTGAACATTTTATGATCA----AACTGGAGAATATTTGTACATCCTACATTCCT
AAACACACATACGAAGATATTAACCATGGAT-GGTTTCAATCCAGGTTGTTCCAGAAAGCCAGAACAGGGCTCTGTACTC
GACCCACACCTTCAAGATCTTGTTCAAGGAAGGTGGATGTGGTACCTTTGTGCCACTCTTCCTGAACCTGATCACATCAG
TGCGGCGCTACAATCAGTTTGAAGCCCAGCCCGCTACTGTGCCCCGTGTGGACCCCATGCAGGCAGCGCAAACTCCTGTC
GACGACATGATGCGCCATGCGTGAGTGCACCAATCTGACATTTCCCAATCTCCTTGTTCCAGCCATTCCTCTGTTGCGTT
GCGT--TGTGAACTCACAGCTGCTCTGATGTTTACAGGTACGTCGATCCACATGATCCTACCAAGATCTTCCTCCAGCAG
CCCGCAGCGGAATCCCAGCTGAGGAGGAGAAACTACCACGGCCCCGCTGAGAATGTGTACTGATGCTTTGGCCTGATTGC
AAAGTGCATGTGTTTTCGGTGATC----TATGTGGCGCACACGAGCAATATATCTGTTTGGTGTCAGG------------
----------ATGTGATGGAAGTATAGTAGTATGAT----------------TGTGTGTTCCACTGTTGGATTCAATCCA
GATCTAAGTATAATAATGTACATACAAGGTGATGTGCTGGATTATATGTTGCTGATCTCGTCGTATA-----------GA
GTTATAAAACTGGTCTGAATGCTGAGTGAATCTGTGTCGACATCTTCAGATGTGTGCGATGGTTTGGTCCA---TTCAGC
CCCTTGAGCCTTGGATGGCAATCAGAATCAGAATATACCGAACCTAGGATGGCAACCTCTCAGTCATAATGTGCATATAA
AGTGGTCTGCTTGGCTATATGTTTGCTGATCCGCTGCAGCACTAGTGTCCCTTGTAATCATCAAACACTTGGATTGGAAT
AAACACACCACAGAGAAGGCTAGAGATTGAGCAACGTCTTGGGGTTTGGGGCAAGGAAGAAAATAT---TACTACAAGCA
GTTCACTGTAAACCAATCGGAAACAAATAAATGTGGATGTTGAGCATCTATCTCTCGTGCAATAGTATTACAAACCATCG
GAAATAC-GCAAGCTCAGCGTTTAT----GGTTTCACAGCATTAT-------ATATTACAGGCATAGTCGCACT---TTG
TTGACAAGGATCATCAAATTCTGCACCGTGTAGCTGGCTGATGACGCAGCAGCGCCACTTGACTCGCAAACTCAGCAACA
TACTACTAGTACAATAGACGAG---------------------------GTATATTATTGGCAGGCAGGTTTAAGGATCA
CAC--GGCCTCCACGCTCGAGGGAGTCTTGGGCGCTGATGATGATGAAGAGCCGCCGCGATC---TACATGGGCTGTCCG
TATCCATTCTGTCGACTGGTG-----GGTGTTTGACAGTTTAGCAAACAGATTAAGA---------ATGACAAGTCTTGA
CAATGCCAAGGAAGATATGGTGATTT-------------------------------------ATTACCTCTAAGTCGTT
GACACATACATAAGGAATGTGCTGAGTCTTTTCCCAGTTGGGGTCTCCAGCTCTTCTGCACGCACTCATCAGCATCTCAT
TGCAGAAGAAGAGACTCAAATACTCAAGAGACCGCGGCAGCGTCGGAAGCGACCGAATGTTCGGGCACCAGTTGAGGTCC
AGGCGCGTGAGCGACGTCAGGTGCTCCATGTGATCCGGCATGGTGGACGAGCTGCAACGGTACATGTGGAACGAACGGAG
GTGAGG
>chr7D_1
GCCGACATGGGCCAGCGAGGACGATGTTGCCAGCTCGTCATCTGCCGCCTCTGTCATTGGCGCGTCCGCAACGCCGGCCT
CTGGGTGAGCTCGTCTGTCTGGTGGCTGGCCAGCCAGCCGCAATGGCAGCTATCTCCTCCTTCTTCGTACGAGAGACGTC
CAACAAGGCTTTGGAGCTCGAGGAGGCCATGGCG-GGTGTGGTGCGGAGTGGAGATAGAGAGCGGAGGAGGGTGGGTGAA
TGCGGCTGTGTTGCCGAACTCGTGTTTAAACAGAGGGTGGAGGGCAGGACATGCGGCGAGGTCCTTAATGGTGTGAAGCA
GACGGACGGACGGGTGGCACCGGAGTAGATTCCTCGGCAACCGCGTATGTTTAATGGAGGGAGGCGGATGGACTAG-TGC
AGTTTGAATGCAGAGAGACGTCCCGTGCACCGGGAAGCGGCGA------CACTCTTAGCCGGCGCGCCGCTTCAATACCG
ACTCCAGTGAGAGGTCGCGTCCGCTCTGTGCCGGCATGAATATGGCACTGGCGCT-------------------------
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>chr5A_691
TGAAAGAAAAAATTTCT---------------------------------------------------------------
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--------------TAACAAACATTTTGGCCAAGGAAAACAAAACCACGGTTATTATACGTACAGCACACGGGTGTGCGG
CAGGGACACGCTTCGGCCCGCGTCTGGAACGCTCTCCGCCTGCCCCGAGAGATCGAGCGGCCCACGCGATCGATCCCCTC
TCGCTCGCATAAACGCGTCGGACCCGACCACCCCCACCCCAACCC-------ATAGTCGCATCGCAACAAAGCCAAACC-
-ACCCGAGTCGACCGCTTCGAGAAGCCTCGCCACCAAGGCACCCAGACCAC------CCTCCTCCCGGGAATCGGAACCG
CGTCCCAGCCAGCCTCGCCAGCCCAACCCATTCGCCGCTCCCCTGATCCATCCGGCGACGCGGCGGAGCAAGGAAGGAAC
CAAGGCTCGAGCAGCGGGCG---------------GCCGGAGAGATGGCGGAGAACCCGCAGCTGTTCGGGAACGGGATG
CCCGTGCCCTTCCACGGCGAGATGTTCGTCCTCGCCCGCGACGGCGTCGAGTTCCACGTCGACAAGATCCCCTCGTGCGT
AATCCCCTCCCCTCCC----TCTTCTCGCCCCGCTTGCTTTCGCCTCGCCTGGACAGATTGCTTTTTTTTTTTTCCGATC
TAGCGTGGCCAGCGATCGCGCTGTCTGGATGGGGATTTTG-ATTGGGGTTAGGTTAGGGGTGCACGCGAAGAAACGGTGG
G----------------------------GGGTTTAGCATCTCTTCGGAATCGGCTCATCTGAGATTCCGGGTGGCGCGG
GCGGCCCGAATTGAGCCGAGCCCTTGGTTTGAGAGGGGAATTTTGCCCTTCGGTGGCTGGCATGTCGCCTTGCAACTAAT
TT--AGCTGTGCTCGTCTTCATCCTCGTCTTCTTCA--GGGGTTGTAAACGTACAATCTCGGAAGGCTTGATGTGTTGGT
GATGCGTGGTTGGCCTAC----ATAGCTTGTATCTATTC--ACTACTAGATAATTTGGAACGCTTGGTTGGAGCTTCCGG
GTGACAAGGAGAAAAATAATGCTGCATGC------TGTATGGTTTGGGATTTAAGAAAGGC-------------------
-----------------------------------------------------------------CA-TGAGTTAGATGA
GGAACGCTTTCGTTGTTTG-------AGTCATTTAGAAGGCTTTCTCATTATGTTCGGCTTAGGTTTTTATCTTATATTG
AATTAAACACTGCTTTGCACAATAATA-ACTAACTGAATAC-TATCATCAGTCTCATATGGTTGCTTCGCCTGTTCTCAG
GGCGCCCGGCGGTCACGCAAAAACAAAGGGCACCATATACCTTTCTAACATAAGGATGGTGTTTGTCGCCGCCAAGCCTG
TTGGCAACTTCTTTGCCTTTGATATGCCCCTGGTGAGCAAATGCATCCTGAAATGACCCTATTATCCCCTGTGAATCTGT
GAAAGGAACAATTGATGTTGCTTCCTTAATAATAATTTCATTACATCAT-GAGTTTACAGCAAAATGTAAATTCTCTGAC
ATGCCTAACTTGTTTGCAGCTGTACGTGCACGGTGAGAAGTTCAACCAACCGATATTTCACTGCAACAATATTTCTGGGT
TCGTTGAGCCGGTGAG----TTGTCACTGAACATTTTTTTATGTTCGTAATTGGAGAATGCTTGTACATCCTACATTCCT
AAACACACATACCAAGATATTAACCTTGTG--GGTTTCAATCCAGGTTGTTCCAGAGAGCCAGAACAGGGCTCTGTACTC
GACCCACACCTTCAAGATCTTGTTCAAGGAAGGTGGATGCGGTACCTTTGTGCCACTCTTCCTGAACCTGATCACATCAG
TGCGGCGCTACAATCAGTTTGAAGCCCAGCCCGCTACTGTGCCCCGTGTGGACCCCATGCAGGCAGCGCAGACTCCTGTC
GATGACATGATGCGCCATGCGTGAGTGCACCAATCTGAAATTTCCCAATCTCCTCCTTGCAGCTATTCCCCT-----GTT
GTGC--TGTGAACTCACTTGTGGTCTGATGTTTACAGGTACGTCGATCCACATGATCCTACCAAGATCTTCCTCCAGCAG
CCCGCAGCGGAATCCCAGCTGAGGAGGAGAAACTACCACGGCCCCGCTGACAACGCGTACTGATGCTTTGGCCTGATTGC
AAAGTGCATGTGTTTTCGACGAGCTATGTATGTGGTGCACATGAGCAATATATCTGTTTGGTGTCATTCCAGTGACTCTC
ACTGAAGAAAATGTGATGGAAGTATAGTAGTATGATGATGATGTTAGACAATTGTGGG-------------TTCAATCTA
GATCTAAGTATAATAATGTACATACAAGGTGCTCTGCTGGATTATATGTTGCTGATCTCGCCGTATAAGTTTCCTTTGGA
GTTATAAAACTGGTCTGAATGCTGAGTAAATTTGTGTCGACATGTTGAGATGTGTGCGTTGGTTTGGTCCATTCTTCAGC
CTCTTGAGCCTTGGATGGCAATCAGAATA-----ATACCAAACCTAGGATGGCAACCTGTCAGTCGTAATGTGCATATAG
AGTGGTCTGCTTGGCTATATGTTTGCTGATCTGCTGCAGCGCCAGTGTCCATAGTAATCATCAACACTTGGAATA-----
AAACACACCAGAGACAT------------AGCAATGTCTTTGGGTTTGGGGCAAGAAAGCAAGTAGAAGTAGTACAAGCA
GTTGGCTGCAAACCAATCGGAAACAAATAAATGTGGATGTTGAGCATCT----CTCGTTT--TCATAGTACATGCCAAGG
GAAACAAGGCAAGCTCAGTGTTCATTCACGGTTTCACAGCATTATTACAGGACATTGCTGCACG----------------
----------------------------------------------------------TTGACTCGCAAACTCAGCAAGA
TACGTACAGTAGACCAAGTAGTAAGTACATTATTTTGAAAACTCAGTAAGTGTATTATTGGCAGGCAGGTTCAAGGATCA
CACACGGCTTCCACGCTCGAGGGAGTCTTGGGCGCTGATGATGATGAAGAGCCGCCGCCATC---TACACGGGCTCTCGT
CTCCACTATG----------TCGTCCTGTGTTTGACAGTTTATCAAACGGATTAAGAAACG--ATCATGACAAGTCTTGA
CAATGCCAAGGAAGATATGGTGTTTTTTTTTTTTTTTGCGGTTGGAAGATATGGTGATCTATTATTACCTCCAAGTCGCT
GACACATACATAAGGAACGTGCTGAAACTTTTCCCAGTTGGGGTCTCCAGCTCTTCTGCACGCACTCATCAGCATCTCAT
GGCAGAAGGTGAGACTCAAGTAGTCAAGAGACCGCGGCAGCGTCGGAAGCGACCGGATGTTCGGGCACCAGTCGAGGTCC
AGGCGCCTGAGCGACGTCAGGTGCTCCATGTGATCCGGCATGGTGGACGAGCTGCAACGGTACATGTAGAACGAACGGAG
GTGAGG
>chr5B_762
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-----------------------------------------------------------------------GGACAGCGG
TAGGGACACGCTTCGGGCCGCGTCTGGAACGCTCTCCGCCTCGCACGAGAGATCGAGCGGTCCACGCGATCGATCCCCTC
TCGCATAA-------------ACGCGACCACCCCCAACCCAACCC-------AGAGTCGCAACGAAACCAAA-CAAACC-
-ACCCGAGTCGACCGCTTCGAGAAGCCTCGCCACCAAGGCACCCAGACCCAGA----CCTCCTCCCGGGAATCGGAACCG
CGTCCCAGCCAGCC--------CCAACCCATTCGTCGCTCCCCTGATCCATCCGGCGACGCGGCGGAGCG----AGGAAC
CAAGGCTCGAGCAGCGGGCGGGCGGGCGGAGAGGAGCCGGAGAGATGGCGGAGAACCCGCAGCTGTTCGGGAACGGGATG
CCCGTGCCCTTCCACGGCGAGATGTTCGTCCTCGCCCGCGACGGCGTCGAGTTCCACGTCGACAAGATCCCCTCGTGCGT
AATCCCCTCTCTCTCATCCGTCCTCTCACCCCGGTTGCTTTCGCCTCGCTTGGACAGATTGCTA-TTTTTTTTTCCGATC
TAGCATCGCGAGCGATCGCGCTGTCTGGATGGGGATTTTTAATTGGGGTTAGGTTAGGGTTTGATGCGAAGAAACGGCGG
GGGATTGGTT----GGCTTCTAGGAGGATGGCTTTAACAGCTCTTCGGAATTGGCTCGTCTGAGATTCCCGGTGATGCGG
GCGGCCCTAATTGTGCCGAGCCCTTAGTTTGAGAGGGGAATTCTGCCCTTCAGTGGCTGGCATGTCGCCTTGCAACGAAT
TTTTAGCTATCCTCGTGTTCGTCCTTGTCTTCTTCAAGAGGATTGCAGACATACGAGTTCC-AAGGTTTGATGTGTTTGT
GATGCCTGGTTTACCAGTATAGGCTTGTATCGAACCACTGGACTGCTACATAATTTGGAACGCTTGGTTGGAACTGCTAG
GTGACAAGGAGAAAAATAATGCTGCTGCTGCATATTGTATGGTTTGGGATTTATTTAGGAACGGT----GCACGGAAACA
CCGTACCATAGTCTGTAGTAGATCGTGAGCTACAAATGCGGCACCCAT----TTATCTCGTTGTGCACTGAGTTAGATGA
GGAATGCTTTCATTGTGTTGTACTCTAGTCATTTAGAAGGCTTTCTCATTGTGTTCCGCATGGGATTTCATCT--TATTA
AGTTAAACACTGCTTTGCACAAAAAATGACTAACTGGACTC-TATCATCAGTCTCATATGGTTGCTTCGCCTGTTCTCAG
GGCGCCCGGCGGTCACGCAAAAACAAAGGGCACCATATACCTGTCTAACATAAGGATGGTGTTTGTCGCCGCCAAGCCTG
TTGGGAACTTCTTTGCCTTTGATATGCCCCTGGTGAGTAAATGCATCCTGAAATGACCCTAT---CCCGTGTGAATCGGT
GGAAGGAACAATTGATGTTGCTTCCTTAATAATAATTTCATTACATCAT-GGGTTCAGAGCAAAATGTAAATTCTCTGAC
ATGGCAAACTTGTTGGCAGCTGTACGTGCACGGTGAGAAGTTCAACCAACCGATATTTCACTGCAACAATATTTCTGGAT
TCGTTGAGCCGGTGAGTTGTTTGTCACTGAACATTTCATGATCG----AACCAGAGAATACTTGCACATCCTACGTTCCT
ATAAAACCACGGGGATACTAATAACCTTGGGCGGGTTCAATGCAGGTTGTTCCAGAGAGCCAGAACAGGGCTCTGTACTC
GACCCACACCTTCAAGATCTTGTTCAAGGAAGGTGGATGTGGTACCTTTGTGCCACTCTTCCTGAACCTGATAACATCAG
TGCGGCGCTACAATCAGTTTGAAGCCCAGCCTGCTACTGTGCCCCGTGTGGACCCCATGCAGGCAGCGCAAACTCCTGTC
GACGACATGATGCGCCATGCGTGAGTGCACCAATCTGACATTTCCCAGTATCCTCCTTCCAGCTATTCCCCT-----GTT
GTGCTGTGTGAACTCACTGGTGGTCTGATGTTCACAGGTATGTCGATCCACATGATCCTACCAAGATCTTCCTCCAGCAG
CCCGCACCGGAATCCCAGCTGAGGAGGAGAAACTACCACGGCCCCGCGGACAACGCGTACTGATGCTTTGGCCTGATTGC
GAAGTGCATGTGTTTTCGATGATC----TATGTGGCGCACACGAGCAATATATCTGTTTGGTGTCATTCTGGTGATTCTC
ACTGAAGGA--TGTGATGGAAGTATAGTAGTGTGATGATGATGTCAGACAATTGTGTGCTTCACTGTTGGATTCAATCCA
GATCTAAGTATAATAATGTACATACAAGGTGATCTGCTGGATTGTATGTTGCTGATCTCGTCGTATA-----------GA
GTTAAG-AATTGGTCTGAATGCTGAGTAAATTTGTGTCGACATGTTGAGATGTGTGCGTTTGTTGGGTCCA---TTCAGC
CTCTTGAGCCTTGGATGGCAATCAGAATA------TACCAAACCTAGGATGGCAAGCTCTCAGTCATATTGTGCATGTAA
AGTGGTCTGCTTGGCTATATGTT-GCTGATCTGCTGCAGCACTAGTGTCCCTTGTAATCAACACACGG-------GGAAT
AAATACACCATAGAGAAAGATAGGGATTGAGCAATGTCTTGTGGTTTGGGGCAAGGAAGAAAATAT---TACTACAAGCA
GTTGACTGCAAACCAATTGGAAACAATTAAATGTGGATCTTGAGCATCT----CTCGTGCAATAATATTACAAACCATGG
GAAATAC-GCAAGCTCAGTGTTTAT----GGTTTCACAGCATTATACTCACTATATTACAGACATAGTAGTTGCAAGTTG
TTGACAAGGATCATCAAATTCTGCACCGTGTAGC-------------AGCAGCACCACCTGACTCGCAAAATCAGCAACA
TG---CTAGTACAATAGACGAG---------------------------GTATATTATTGGCAGGCAGGTTTAAGGATCA
CAC--GGCCTCCACGCTTGAGGGAGTCTTGGGCGATGATGATGATGAAGAGCCGCCGCCATCATCTACATGGGCTCTTCG
TGTCCAGGGTGTCCATTCCATCGTCTGGTGTTTGACAGTTTAGCAAACGGATTAAGAAACACCATCATGACAACTCTTTA
CAA----------------------------------------GGAAGATACGGTGAT---TTATTACCTCTAAGTCATT
GACACACACATAAGGAACGTGCTGAATCTTTTCCCAGTTGGGGTCTCCAGCTCTTCTGCATGAACTCATCAGCATCTCAT
TGCAGAAGCTGAGATCGAAGTGCTCAAGAGAACGCGGCAGCGTCGGAAGCGACCGGATGTTCGGGCACCAGTCGAGGGCC
AGGTACTTGAGCGACGTCAGGTGCTCCATGTGATCCGGCATGGTGGACGAGCTGCAGCGGCACATGTAGAAGGAACGGAG
GTGAGG
>SNPs
----S------------------S--SSS--S----------SS-------SSSS------SS----S--S-SSSS----
SS--S-------------S-SS----SS-------S----S------SSSS-------SS----SSSSSSSS--------
-S--SSS------------S----S------S--S----------S---S---S----S------------S---S--SS
SS----------S---SSSSS-SS------SS-S--S----S-------------------SS-S--------S-SS---
-----------S---SS-S---------S------S--------SS-------S----------S---SSS--SS-S---
S-----S-S--S---S-----------S---SS---S------SSSSSS--S---SS------S----S-------SS--
S--------SS------------------------------SS---S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS---------S------SS---S-----------------SS-------S---S-------------
----------------------------------------------------------------------S---------
---------------------------------------------SSSSSSS----S-----------------S-S--S
S-------------------------S------------------------SSSSSS-----------------------
----S---------------------------------------------------------------------------
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--------S----------------------------------------------------S----------SS------
----------S--------------------------------S-----S-------------------S----------
----------SSSS------S----------------------------------S------------SS----S----S
------S---------S-S-------------------------------------------S-----------------
--------S-----------------------------------------------------------------------
--------------------SS---------S---------------------S--------------------------
-----------------------------------------------------------------SSSS----S--S---
----S--SS---------------------------------------SSSS----------------S-----------
-----------------S--------------------------------------S-----------SSSS--------
-------------------S-----S------------S--S--------------------------------------
--------------------------------------------------------------------------------
----------------------------S-------------------------------------S----------S--
S----------------------------------------S-------S--------S---------------------
---S----------------------------------------------------------------------------
-------------------------S-----------------S----------------S-------------------
-------------------------S---SS-------------------------S-----------------------
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------------------------------------------------------SS-------S-----S--SSSSS---
-S-S-------------S-S--S---------------------------------------------------------
--------------------------------------------------S--S-S------------------------
------------------S-----------------------------------------------SS------------
----------------------------------------------------------S-S-------------------
---------------------------------S----------------------------------------------
---------------------------S---S-----------S--S-----------S---------------------
-S--------------------------SSSSSS-----S----------------------------------------
-------------------------------S----------------------------------SS-S-S--S-----
----------S------S-S---S----------S---------------------------------------------
---S----S----------------------------------------SSSS-----------S-------------S-
------------------S------------------------------------------S------S-SSSS------
----------------------------------SSSSSSSSSSSSS------S--------------------------
---SS---------------------------------------------------------------------------
----------------------------------------------------------S----------------S----
-S-----SS----S-S-SSSS---------------------------S-------------------------------
----------------------S---------------------------------------------------------
-----------------S-------S------------------------------------------------------
--------SS---------S-----------------------------------S----------------S-------
------S------------------------------------------------------------S------------
------
>forward_271
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-----------TCCCGGGGCTGCATTTAAAT-------------------------------------------------
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>reverse_1452
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-----------ATTGGCTTCGAGGAGGATGG-------------------------------------------------
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>forward_555
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-------------------------------------------------------TTCGGACAGGAAAGGACGTG-----
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>reverse_2189
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------TCTGGTGAGCAAATGCATCCT-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
>forward_618
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------CAAGCCCCATGTTTGCTTCC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
>reverse_2511
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TGGTTTCAATCCAGGTTGTTCC----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
>forward_1889
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------CTACAAATGCGGCACCCATG-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
>reverse_3599
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------CG
GAAATACGCAAGCTCAGC--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
