AutoCloner

Multiple sequence alignment - TraesCS5D01G289200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G289200	chr5D	100.000	2294	0	0	1	2294	388042856	388045149	0.000000e+00	4237.0
1	TraesCS5D01G289200	chr5D	91.727	278	21	2	1580	1856	500855668	500855944	3.580000e-103	385.0
2	TraesCS5D01G289200	chr5D	87.029	239	31	0	2032	2270	477177318	477177556	1.040000e-68	270.0
3	TraesCS5D01G289200	chr5A	91.357	2291	144	36	1	2275	491214004	491216256	0.000000e+00	3085.0
4	TraesCS5D01G289200	chr5B	85.996	914	70	31	1	870	466643343	466644242	0.000000e+00	926.0
5	TraesCS5D01G289200	chr5B	94.336	459	19	3	867	1318	466644341	466644799	0.000000e+00	697.0
6	TraesCS5D01G289200	chr5B	92.135	267	17	4	1315	1578	466645143	466645408	7.740000e-100	374.0
7	TraesCS5D01G289200	chr5B	90.000	170	5	4	1858	2025	466645392	466645551	2.310000e-50	209.0
8	TraesCS5D01G289200	chr7D	93.662	284	14	3	1580	1862	616195093	616195373	2.720000e-114	422.0
9	TraesCS5D01G289200	chr1B	93.233	266	17	1	1580	1844	57690110	57689845	7.680000e-105	390.0
10	TraesCS5D01G289200	chr1B	87.251	251	30	1	2025	2275	681000242	680999994	3.730000e-73	285.0
11	TraesCS5D01G289200	chr1B	84.409	186	27	2	1110	1294	16480526	16480342	5.030000e-42	182.0
12	TraesCS5D01G289200	chr1B	83.333	186	29	2	1110	1294	16652499	16652315	1.090000e-38	171.0
13	TraesCS5D01G289200	chr1B	84.783	92	14	0	1118	1209	16457124	16457033	2.430000e-15	93.5
14	TraesCS5D01G289200	chr3D	93.511	262	16	1	1583	1843	539555370	539555109	2.760000e-104	388.0
15	TraesCS5D01G289200	chr3D	90.837	251	23	0	2025	2275	135391849	135391599	1.020000e-88	337.0
16	TraesCS5D01G289200	chr3D	92.857	140	10	0	2118	2257	181802930	181803069	1.070000e-48	204.0
17	TraesCS5D01G289200	chr2A	92.857	266	18	1	1580	1844	65033862	65033597	3.580000e-103	385.0
18	TraesCS5D01G289200	chr2A	81.786	280	39	9	1580	1858	585194912	585195180	8.250000e-55	224.0
19	TraesCS5D01G289200	chr3A	90.837	251	23	0	2025	2275	150797240	150796990	1.020000e-88	337.0
20	TraesCS5D01G289200	chr6D	80.976	410	65	12	348	749	466952256	466951852	1.710000e-81	313.0
21	TraesCS5D01G289200	chr1D	87.500	248	30	1	1580	1826	437830735	437830982	3.730000e-73	285.0
22	TraesCS5D01G289200	chr1D	83.333	186	29	2	1110	1294	11201922	11201738	1.090000e-38	171.0
23	TraesCS5D01G289200	chr1D	88.298	94	11	0	1112	1205	10955130	10955037	1.860000e-21	113.0
24	TraesCS5D01G289200	chrUn	78.689	427	63	23	349	761	82523328	82523740	2.260000e-65	259.0
25	TraesCS5D01G289200	chr6B	90.050	201	19	1	1580	1779	237385130	237384930	2.260000e-65	259.0
26	TraesCS5D01G289200	chr1A	83.051	177	28	2	1110	1285	22631973	22632148	2.360000e-35	159.0
27	TraesCS5D01G289200	chr1A	86.585	82	11	0	1125	1206	22661601	22661682	8.730000e-15	91.6
28	TraesCS5D01G289200	chr7B	88.136	118	14	0	2158	2275	605358988	605359105	8.540000e-30	141.0
29	TraesCS5D01G289200	chr7B	83.871	124	14	5	347	468	436642599	436642480	1.860000e-21	113.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G289200	chr5D	388042856	388045149	2293	False	4237.0	4237	100.00000	1	2294	1	chr5D.!!$F1	2293
1	TraesCS5D01G289200	chr5A	491214004	491216256	2252	False	3085.0	3085	91.35700	1	2275	1	chr5A.!!$F1	2274
2	TraesCS5D01G289200	chr5B	466643343	466645551	2208	False	551.5	926	90.61675	1	2025	4	chr5B.!!$F1	2024

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
144	146	0.108186	TCTGTGTCATCGCCATCACC	60.108	55.0	0.0	0.0	0.00	4.02	F
856	904	0.171231	CGTCAACTGATCCAGCTCGA	59.829	55.0	0.0	0.0	34.37	4.04	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1007	1166	0.178964	CCCAGCAGGACCCTTTTGAA	60.179	55.000	0.00	0.0	38.24	2.69	R
1758	2267	1.075050	TCCTCCTACGAACCAGACTGT	59.925	52.381	0.93	0.0	0.00	3.55	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
28	29	3.314635	GGACGAGATATGAACCACGTACT	59.685	47.826	0.00	0.00	34.26	2.73
72	73	3.782889	AGCAAAAACGAATATGAGGGC	57.217	42.857	0.00	0.00	0.00	5.19
90	91	4.504858	AGGGCACGTTCAGTTAAGAATAG	58.495	43.478	0.00	0.00	0.00	1.73
143	145	1.725641	TTCTGTGTCATCGCCATCAC	58.274	50.000	0.00	0.00	0.00	3.06
144	146	0.108186	TCTGTGTCATCGCCATCACC	60.108	55.000	0.00	0.00	0.00	4.02
145	147	1.078497	TGTGTCATCGCCATCACCC	60.078	57.895	0.00	0.00	0.00	4.61
146	148	1.078497	GTGTCATCGCCATCACCCA	60.078	57.895	0.00	0.00	0.00	4.51
147	149	0.464373	GTGTCATCGCCATCACCCAT	60.464	55.000	0.00	0.00	0.00	4.00
148	150	0.179048	TGTCATCGCCATCACCCATC	60.179	55.000	0.00	0.00	0.00	3.51
149	151	0.179048	GTCATCGCCATCACCCATCA	60.179	55.000	0.00	0.00	0.00	3.07
150	152	0.545646	TCATCGCCATCACCCATCAA	59.454	50.000	0.00	0.00	0.00	2.57
161	165	4.613925	TCACCCATCAATATGCTCTCTC	57.386	45.455	0.00	0.00	0.00	3.20
162	166	3.326006	TCACCCATCAATATGCTCTCTCC	59.674	47.826	0.00	0.00	0.00	3.71
170	179	9.327628	CCATCAATATGCTCTCTCCAATATAAG	57.672	37.037	0.00	0.00	0.00	1.73
193	231	7.472334	AGATGCTTTGGACATTTCAAATAGT	57.528	32.000	0.00	0.00	34.19	2.12
236	274	9.737427	ACGAATGAACAAACACATTAAAACATA	57.263	25.926	0.00	0.00	36.94	2.29
335	373	8.377799	TGTTCAATGGTCATATACTCATATGCT	58.622	33.333	0.00	0.00	42.57	3.79
355	393	3.624777	CTGGAAAAGCCACAGGTGATAT	58.375	45.455	0.00	0.00	43.33	1.63
404	444	6.254804	ACCAACTTTGAGACGCAAATTTAAAC	59.745	34.615	4.76	0.00	44.90	2.01
415	455	9.021863	AGACGCAAATTTAAACGTTTCAAAATA	57.978	25.926	18.42	0.00	39.16	1.40
469	510	4.721132	TGTGACTACAACCCCTAAAAAGG	58.279	43.478	0.00	0.00	32.88	3.11
470	511	4.166531	TGTGACTACAACCCCTAAAAAGGT	59.833	41.667	0.00	0.00	38.27	3.50
471	512	4.758674	GTGACTACAACCCCTAAAAAGGTC	59.241	45.833	0.00	0.00	34.45	3.85
472	513	4.661709	TGACTACAACCCCTAAAAAGGTCT	59.338	41.667	0.00	0.00	34.45	3.85
567	608	5.362556	AGCATAATTGACACTGTTCACAC	57.637	39.130	0.00	0.00	0.00	3.82
856	904	0.171231	CGTCAACTGATCCAGCTCGA	59.829	55.000	0.00	0.00	34.37	4.04
884	1036	7.485277	CAGTTTAGTACTAGCATCGCATATACC	59.515	40.741	2.23	0.00	34.56	2.73
888	1047	4.179926	ACTAGCATCGCATATACCAGTG	57.820	45.455	0.00	0.00	0.00	3.66
892	1051	5.914898	AGCATCGCATATACCAGTGTATA	57.085	39.130	0.00	0.00	42.56	1.47
894	1053	6.878317	AGCATCGCATATACCAGTGTATATT	58.122	36.000	3.15	0.00	44.56	1.28
952	1111	5.092105	CGATCACATAGCTAGCTATCACAC	58.908	45.833	30.32	19.48	37.16	3.82
1005	1164	5.590259	CACAAGAAAGTATTACTCCATGGGG	59.410	44.000	11.11	11.11	0.00	4.96
1006	1165	5.253096	ACAAGAAAGTATTACTCCATGGGGT	59.747	40.000	23.68	23.68	34.93	4.95
1007	1166	6.187682	CAAGAAAGTATTACTCCATGGGGTT	58.812	40.000	25.56	8.64	34.93	4.11
1034	1193	1.377333	GTCCTGCTGGGGTTAGTGC	60.377	63.158	10.07	0.00	35.33	4.40
1374	1881	2.358247	CATATACGCCCGCCCCAC	60.358	66.667	0.00	0.00	0.00	4.61
1389	1896	2.879154	CCCCACATGGATCAATGCATA	58.121	47.619	10.19	0.00	36.67	3.14
1400	1908	4.398358	GGATCAATGCATAGATGTCATGGG	59.602	45.833	0.00	0.00	0.00	4.00
1403	1911	5.202765	TCAATGCATAGATGTCATGGGTTT	58.797	37.500	0.00	0.00	0.00	3.27
1494	2003	3.733337	CGGAGTTGGATTATCTTCTGGG	58.267	50.000	0.00	0.00	0.00	4.45
1616	2125	1.299541	AAAGCACCAACGACAGACAG	58.700	50.000	0.00	0.00	0.00	3.51
1635	2144	0.249911	GGTCACAACACCGCTCTCTT	60.250	55.000	0.00	0.00	0.00	2.85
1638	2147	1.134521	TCACAACACCGCTCTCTTGTT	60.135	47.619	0.00	0.00	33.69	2.83
1643	2152	1.139058	ACACCGCTCTCTTGTTGAAGT	59.861	47.619	0.00	0.00	0.00	3.01
1654	2163	4.645535	TCTTGTTGAAGTGATTAGCAGCT	58.354	39.130	0.00	0.00	0.00	4.24
1655	2164	5.065914	TCTTGTTGAAGTGATTAGCAGCTT	58.934	37.500	0.00	0.00	0.00	3.74
1697	2206	5.491070	AGAGCTTGTATTCATGCAGTGTAA	58.509	37.500	11.82	0.00	43.98	2.41
1699	2208	4.396166	AGCTTGTATTCATGCAGTGTAACC	59.604	41.667	11.82	0.00	43.98	2.85
1705	2214	1.202710	TCATGCAGTGTAACCGTTGGT	60.203	47.619	0.00	0.00	37.80	3.67
1738	2247	0.809636	TCATGAGTTGGCCGCGTATG	60.810	55.000	4.92	4.52	0.00	2.39
1758	2267	2.638354	CCGTAGCACCCCACGTACA	61.638	63.158	0.00	0.00	36.44	2.90
1770	2280	1.405461	CACGTACACAGTCTGGTTCG	58.595	55.000	4.53	10.89	0.00	3.95
1771	2281	1.027357	ACGTACACAGTCTGGTTCGT	58.973	50.000	15.31	15.31	0.00	3.85
1775	2285	1.991121	ACACAGTCTGGTTCGTAGGA	58.009	50.000	4.53	0.00	0.00	2.94
1780	2290	0.816373	GTCTGGTTCGTAGGAGGACC	59.184	60.000	0.20	0.20	0.00	4.46
1782	2292	1.664321	CTGGTTCGTAGGAGGACCGG	61.664	65.000	0.00	0.00	41.83	5.28
1918	2428	2.328819	AGCTAGCTTTGCTCATGGAG	57.671	50.000	12.68	0.00	40.44	3.86
1919	2429	1.558756	AGCTAGCTTTGCTCATGGAGT	59.441	47.619	12.68	0.00	40.44	3.85
1920	2430	1.939255	GCTAGCTTTGCTCATGGAGTC	59.061	52.381	7.70	0.00	40.44	3.36
1921	2431	2.679059	GCTAGCTTTGCTCATGGAGTCA	60.679	50.000	7.70	0.00	40.44	3.41
2067	2579	3.679917	GCGGATCTTTTCTCTCACATCCA	60.680	47.826	0.00	0.00	31.68	3.41
2080	2592	2.113860	ACATCCACCATGTGCTACAC	57.886	50.000	0.00	0.00	44.70	2.90
2081	2593	1.630369	ACATCCACCATGTGCTACACT	59.370	47.619	0.00	0.00	44.70	3.55
2082	2594	2.040278	ACATCCACCATGTGCTACACTT	59.960	45.455	0.00	0.00	44.70	3.16
2088	2600	1.460743	CCATGTGCTACACTTGACACG	59.539	52.381	13.40	0.00	40.46	4.49
2092	2604	0.937699	TGCTACACTTGACACGCGTC	60.938	55.000	9.86	0.00	42.93	5.19
2101	2613	1.080093	GACACGCGTCTTGATGGGA	60.080	57.895	9.86	0.00	39.22	4.37
2124	2636	0.179127	CGCATCGCTTCTCTCCTTCA	60.179	55.000	0.00	0.00	0.00	3.02
2126	2638	2.134346	GCATCGCTTCTCTCCTTCATC	58.866	52.381	0.00	0.00	0.00	2.92
2233	2745	2.125391	TCTGACCATGCAGAGCGC	60.125	61.111	0.00	0.00	39.84	5.92
2236	2748	2.186384	GACCATGCAGAGCGCTCT	59.814	61.111	33.83	33.83	43.06	4.09
2237	2749	1.322538	TGACCATGCAGAGCGCTCTA	61.323	55.000	37.74	25.03	43.06	2.43
2244	2756	0.109964	GCAGAGCGCTCTATACTCCG	60.110	60.000	37.74	24.33	37.98	4.63
2263	2775	1.398390	CGATTCTTGCAACTAGGCACC	59.602	52.381	0.00	0.00	44.86	5.01
2290	2802	2.399396	AAAAACCACGCATTCTCACG	57.601	45.000	0.00	0.00	0.00	4.35
2291	2803	0.040425	AAAACCACGCATTCTCACGC	60.040	50.000	0.00	0.00	0.00	5.34

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
28	29	6.685527	TTGTCAGTGCATAAAGTAACAACA	57.314	33.333	0.00	0.00	0.00	3.33
72	73	5.839262	TGCACTATTCTTAACTGAACGTG	57.161	39.130	0.00	0.00	35.58	4.49
143	145	4.362470	TTGGAGAGAGCATATTGATGGG	57.638	45.455	0.00	0.00	33.26	4.00
144	146	9.327628	CTTATATTGGAGAGAGCATATTGATGG	57.672	37.037	0.00	0.00	33.26	3.51
148	150	8.828644	GCATCTTATATTGGAGAGAGCATATTG	58.171	37.037	0.00	0.00	31.26	1.90
149	151	8.770322	AGCATCTTATATTGGAGAGAGCATATT	58.230	33.333	0.00	0.00	32.51	1.28
150	152	8.321621	AGCATCTTATATTGGAGAGAGCATAT	57.678	34.615	0.00	0.00	32.51	1.78
161	165	8.415553	TGAAATGTCCAAAGCATCTTATATTGG	58.584	33.333	0.00	0.00	41.47	3.16
162	166	9.806203	TTGAAATGTCCAAAGCATCTTATATTG	57.194	29.630	0.00	0.00	0.00	1.90
170	179	7.542025	AGACTATTTGAAATGTCCAAAGCATC	58.458	34.615	13.19	0.00	37.00	3.91
193	231	9.731819	GTTCATTCGTTTCAGTCTATATGTAGA	57.268	33.333	0.00	0.00	34.60	2.59
281	319	4.503296	GGCATACGTATTCCCTCTGTTCAT	60.503	45.833	12.70	0.00	0.00	2.57
311	349	7.825761	CCAGCATATGAGTATATGACCATTGAA	59.174	37.037	6.97	0.00	45.92	2.69
335	373	3.010027	TGATATCACCTGTGGCTTTTCCA	59.990	43.478	0.00	0.00	44.18	3.53
355	393	5.164620	TCATGAGAGCATTTAAGGTGTGA	57.835	39.130	0.00	0.00	30.68	3.58
372	411	3.932710	GCGTCTCAAAGTTGGTATCATGA	59.067	43.478	0.00	0.00	0.00	3.07
443	483	6.436738	TTTTAGGGGTTGTAGTCACATACA	57.563	37.500	0.00	0.00	33.76	2.29
856	904	5.515797	TGCGATGCTAGTACTAAACTGAT	57.484	39.130	3.76	0.00	39.39	2.90
952	1111	1.093972	TGCCCAATCAACGTGCTATG	58.906	50.000	0.00	0.00	0.00	2.23
1005	1164	1.341209	CCAGCAGGACCCTTTTGAAAC	59.659	52.381	0.00	0.00	36.89	2.78
1006	1165	1.703411	CCAGCAGGACCCTTTTGAAA	58.297	50.000	0.00	0.00	36.89	2.69
1007	1166	0.178964	CCCAGCAGGACCCTTTTGAA	60.179	55.000	0.00	0.00	38.24	2.69
1034	1193	2.160822	GATCAGACCCACCATGATCG	57.839	55.000	0.00	0.00	39.79	3.69
1374	1881	6.404734	CCATGACATCTATGCATTGATCCATG	60.405	42.308	30.21	30.21	34.26	3.66
1389	1896	2.880443	AGCACAAAACCCATGACATCT	58.120	42.857	0.00	0.00	0.00	2.90
1400	1908	3.127721	GGATCCAAGAGCTAGCACAAAAC	59.872	47.826	18.83	1.15	0.00	2.43
1403	1911	2.191400	AGGATCCAAGAGCTAGCACAA	58.809	47.619	18.83	0.00	0.00	3.33
1458	1967	0.976641	CTCCGCCCAAGCATATAGGA	59.023	55.000	0.00	0.00	39.83	2.94
1467	1976	2.158755	AGATAATCCAACTCCGCCCAAG	60.159	50.000	0.00	0.00	0.00	3.61
1472	1981	3.134458	CCAGAAGATAATCCAACTCCGC	58.866	50.000	0.00	0.00	0.00	5.54
1596	2105	2.479837	CTGTCTGTCGTTGGTGCTTTA	58.520	47.619	0.00	0.00	0.00	1.85
1611	2120	1.227556	GCGGTGTTGTGACCTGTCT	60.228	57.895	0.00	0.00	33.35	3.41
1616	2125	0.249911	AAGAGAGCGGTGTTGTGACC	60.250	55.000	0.00	0.00	0.00	4.02
1635	2144	4.393062	GCTAAGCTGCTAATCACTTCAACA	59.607	41.667	0.90	0.00	0.00	3.33
1638	2147	3.935203	GTGCTAAGCTGCTAATCACTTCA	59.065	43.478	0.90	0.00	0.00	3.02
1643	2152	1.290203	GCGTGCTAAGCTGCTAATCA	58.710	50.000	0.90	0.00	0.00	2.57
1673	2182	3.937706	ACACTGCATGAATACAAGCTCTC	59.062	43.478	0.00	0.00	40.70	3.20
1686	2195	1.234821	ACCAACGGTTACACTGCATG	58.765	50.000	0.00	0.00	27.29	4.06
1687	2196	2.300723	TCTACCAACGGTTACACTGCAT	59.699	45.455	0.00	0.00	37.09	3.96
1705	2214	3.211865	ACTCATGACTCGCGGTATTCTA	58.788	45.455	6.13	0.00	0.00	2.10
1758	2267	1.075050	TCCTCCTACGAACCAGACTGT	59.925	52.381	0.93	0.00	0.00	3.55
1770	2280	1.849977	AGAAAGTCCGGTCCTCCTAC	58.150	55.000	0.00	0.00	0.00	3.18
1771	2281	2.176889	CAAGAAAGTCCGGTCCTCCTA	58.823	52.381	0.00	0.00	0.00	2.94
1775	2285	3.390311	AGTTTACAAGAAAGTCCGGTCCT	59.610	43.478	0.00	0.00	0.00	3.85
1780	2290	5.494632	AACCAAGTTTACAAGAAAGTCCG	57.505	39.130	0.00	0.00	0.00	4.79
1782	2292	6.916387	GCCTTAACCAAGTTTACAAGAAAGTC	59.084	38.462	0.00	0.00	0.00	3.01
1914	2424	3.749064	GAGCTCGCCGTGACTCCA	61.749	66.667	0.00	0.00	0.00	3.86
1915	2425	3.691744	CTGAGCTCGCCGTGACTCC	62.692	68.421	9.64	0.00	0.00	3.85
1916	2426	1.999071	ATCTGAGCTCGCCGTGACTC	61.999	60.000	9.64	0.00	0.00	3.36
1917	2427	2.049185	ATCTGAGCTCGCCGTGACT	61.049	57.895	9.64	0.00	0.00	3.41
1918	2428	1.875813	CATCTGAGCTCGCCGTGAC	60.876	63.158	9.64	0.00	0.00	3.67
1919	2429	2.491621	CATCTGAGCTCGCCGTGA	59.508	61.111	9.64	2.65	0.00	4.35
1920	2430	2.584418	CCATCTGAGCTCGCCGTG	60.584	66.667	9.64	5.31	0.00	4.94
1921	2431	2.755876	TCCATCTGAGCTCGCCGT	60.756	61.111	9.64	0.00	0.00	5.68
2032	2544	2.388735	AGATCCGCCAGTTGATCACTA	58.611	47.619	0.00	0.00	39.86	2.74
2047	2559	4.195416	GGTGGATGTGAGAGAAAAGATCC	58.805	47.826	0.00	0.00	36.89	3.36
2067	2579	2.494059	GTGTCAAGTGTAGCACATGGT	58.506	47.619	0.00	0.00	36.74	3.55
2074	2586	1.773496	GACGCGTGTCAAGTGTAGC	59.227	57.895	20.70	0.00	44.82	3.58
2088	2600	2.456119	CGCTGTCCCATCAAGACGC	61.456	63.158	0.00	0.00	37.04	5.19
2092	2604	1.769098	CGATGCGCTGTCCCATCAAG	61.769	60.000	9.73	0.00	38.14	3.02
2106	2618	2.134346	GATGAAGGAGAGAAGCGATGC	58.866	52.381	0.00	0.00	0.00	3.91
2109	2621	1.115467	GGGATGAAGGAGAGAAGCGA	58.885	55.000	0.00	0.00	0.00	4.93
2115	2627	3.831911	GTGGAGATAGGGATGAAGGAGAG	59.168	52.174	0.00	0.00	0.00	3.20
2124	2636	2.639839	CCATTTCGGTGGAGATAGGGAT	59.360	50.000	0.00	0.00	42.02	3.85
2126	2638	1.543429	GCCATTTCGGTGGAGATAGGG	60.543	57.143	6.60	0.00	42.02	3.53
2233	2745	5.837437	AGTTGCAAGAATCGGAGTATAGAG	58.163	41.667	0.00	0.00	0.00	2.43
2236	2748	5.509163	GCCTAGTTGCAAGAATCGGAGTATA	60.509	44.000	0.00	0.00	0.00	1.47
2237	2749	4.740934	GCCTAGTTGCAAGAATCGGAGTAT	60.741	45.833	0.00	0.00	0.00	2.12
2244	2756	2.421424	CAGGTGCCTAGTTGCAAGAATC	59.579	50.000	0.00	0.00	44.11	2.52

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.