>input_sequence_84695
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--------------------------------------ATGGGGTTTCAAAAGGGTCCTGCTGGGGTTAGTGCGATCATG
GTGGGTCTGATCATAGTGATCATGGCCACTGCGGCTATGAGCTGCTCGGAGAAGGTGGCCACCGACGAGAAGACGTCGTG
GCCGGAGGTGGTAGGGCTGAGCGTGGAGAAGGCCAAGGAGATCATCCTCAAGGACAAGCCCGACGCCGACATCGTCGTCC
TCCCCGTTGGCTCGCCGGTCACCAAGGACTACAGGTCCGAGCGCGTCCGCATCTTCATTGACACCGTCGCCGAGATCCCC
CACACTGGCTAG--------------------------------------------------------------------
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>chr5D_1_TraesCS5D01G289200
AGGCAAGGACGAGATATGAACCACGTACTGTTGTTACTTTATGCACTGACAAAGCAAAAACGAATATGAGGGCACGTTCA
GTTAAGAATAGTGCATGCGCAATGC-TGGACTTTTGGATAATACTTTCTGTGTCATCGCCATCACCCATCAATATGCTC-
-TCTCC-----AATATAAGATGCT-----------------------------TTGGACATTTCAAATAGTCTACATATA
GACTGAAACGAATGAACAAACACATTAAAACATATTTATATACATTCGATTTCATGAAAGTGAAAACATTTTATATTTAT
GAACAGAGGGAATACGTATGCCGTTCTGTTCAATGGTCATATACTCATATGCTGGAAAAGCCACAGGTGATATC-ACACC
TTAAATGCTCTCATGATACCAACTTTGAGACG-CAAATTTAAACGTTTCAAAATATTTTGAATCTTTTATGAATGTTCAC
AATGTATGTGACTACAACCCCTAAA-AAGGTCTGATCAAAATTCAAAATACACATTAAGAAACAAAAAAGACAAATCTAG
AATGAAAAGTGTCAAAAAAGTCAAAAGCATAATTGACACTGTTCACACCTGGATTTCTCTTTTTTGTTTCTCAAGGTACA
TTTCGATTTTTAACCTGAAATTTTCAGCGGTTGTAGATACATTTCCTGTGAACATTCACAATTTTCAGAATTTTTTGA--
ACATCTAAAATTGAC----TTTTTTGAAATGGTAGCATGGGAGCACGTGAGTCTTGATATCACTGGATATTCTCCCATCA
TATGCGTGCTAGCCAGCATTAATTTGGGCCAGCTGGTCAACGACTCGATGCGCGGGACAGATACTTAATTTCACATCATG
G-ATCGTCAACTGATCCAGCTCGATCAGTT--TAG---------------------------------------------
---------------------------------------------------------TACTAGCATCGCATATACCA---
----GTGTATATTTATCCTATAAATAGGAGTATTGTTGTTCGGGGATCGATCACATAGCTAGCTATCACACATAGCACGT
TGATTGGGCAAACACATCACACAAGAAAGTATTACTCCATGGGGTTTCAAAAGGGTCCTGCTGGGGTTAGTGCGATCATG
GTGGGTCTGATCATAGTGATCATGGCCACTGCGGCTATGAGCTGCTCGGAGAAGGTGGCCACCGACGAGAAGACGTCGTG
GCCGGAGGTGGTAGGGCTGAGCGTGGAGAAGGCCAAGGAGATCATCCTCAAGGACAAGCCCGACGCCGACATCGTCGTCC
TCCCCGTTGGCTCGCCGGTCACCAAGGACTACAGGTCCGAGCGCGTCCGCATCTTCATTGACACCGTCGCCGAGATCCCC
CACACTGGCTAGCTAAGCTACCTGTCTAAACA------------------------------------------------
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-----------------------------------------------------------TAAGTATTTATTTTTGTCAAG
GGTATACA-TGGACGAATAATTTCATATACGCCCGCCCCACATGGATCAATGCATAGATGTCAT-GGGTTTTGTGCTAGC
TCTTGGATCCTTCATATTGCATCT-TTTCTTTATGAGTTTTTTTTCTCCTATATGCTTGGGCGGAGTTGGATTATCTTCT
GGGCACCCTTGGTGTCGGCTTCTCCAGGATGTCGGTCTATGTTGACGACTTTTCAGGAACTTCTTGTATAAACTTCTGGG
TTTCAGTGAGGCGGTGGCGATGCTTAAAGCACCAACGACAGACAGGTCACAACACCGCTCTCTTGTTGAAGTGATTAGCA
GCTTAGCACGCCGTCATGCTAGAGAGCTTGTATTCATGCAGTGTAACCGTTGGTAGAATACCGCGAGTCATGAGTTGGCC
GCGTATGGCCGTAGCACCCCACGTACA-CAGTCTGGTTCGTAGGAGGACCGGACTTTCTTGTAAACTTGGTTAAGGCCGA
GAGGCCTCCTTGAGTAATGAAAGTTTTTTCCCCCTACAAGAAAAAAAAACTTCTGAGTTTCAGCAAGGTTGCATGAGACA
GAGGTCCGAGCTAGCTTTGCTCATGGAGTCACGGCGAGCTCAGATGGA-GCAGAAAGAAGACGGTTCATTTTCTTAA-AG
GACTTGCCTCTAATTTCTTGTTATTCTAAGAAAGTTTTTGCAAGGGCTTTTTCTAGGAAAAGCTAGTGATCAACTGGCGG
ATCTTTTCTCTCACATCCACCATGTGCTACACTTGACACGCGTCTTGATGGGACAGCGCATCGCTTCTCTCCTTCATCCC
TATCTCCACCGAAATGGCCGCATATATTTATCTCTCCTTTCCATGAGTTGAATCAAACCTTCACCCGCAACCTCTTTCTG
GATCTCATCTGACCATGCAGAGCGCTCTATACTCCGATTCTTGCAACTAGGCACCTGTTTCAAAAAACCACGCATTCTCA
CGCGC
>chr5A_1
AGGCAAGGACGCGATATGAAGCACGTATGGTTGTTACTTTATGCAATGACAAAGCAAAAACGAACATGAGGGTACGTTCA
GTTAAGAATAATGCATGCGGAATGCATGGACCTTTGGATAATACTTTCTGTGTCATCGCCATAAG-------TATGCTC-
-TCTGTTCACGAATATAAAATGCT-----------------------------TTGGACATTTCAAATAGACTACATATA
GATA-AAATGAATGAACAAACACATTAAAACATGTTTATATACATTCGATTTCATAAAAGTGAAAACATTTTATATTTGT
GAACGGAGGGAGTGCGTATGCCGTTCTGGTCAATGGTCATATACTCATATGCGGGGAAAGTATTAGGTGATA-C-ACACC
TTAAATGCTCCCATGATACCAACTTTGAGACGACGCATTTAAATGTTTCAAAATTTTCTGAATTTTTTGTTAATGTTCAC
AAAGTATGTGACTAGAACCCCTAAA-AAGTCA-GATCCAAATTCAAAATACACATTAAGAAACAAAAAAGACAAACCTAG
AATGAAAAGTGTGAAAAAAATCAAAAGCATAATTGACACTGTTCACATCCGGATTTCTCTTTTTTGTTTCTCAAGGTTCA
TTTTGATTTTTATCCTGAAATTTTCAGCGGTTGTAGATACATTTCCTGTGAACATTCACATTTTTTCAGAATTTTTTGAA
ACATCTAAAATTGACTCTTTTTTTTGAAATGGTAGCATGGGAGCACGTGAGTCTTGATATCACTGGATATTCTCCCATCA
TATGCGTGCTAGACAGCATTAATTTGGGCCAGCTGGTCAACGACTCGATGGGCGGGACAGATACTTAATTTCACATCATC
GAATCGTCAACTGATCCAGCTCGCTCAGTTATTAG---------------------------------------------
---------------------------------------------------------TACTGGCATCGCATACTAGTAGT
G-----------------TATAAATAGGAGTAGTGTTGTTCGGGGATCGATCACATAGCTAACTATCACATATAGCACGT
TGATTGGGCAAACACATCACACAAGAAAGTATTACTCCATGGGAGCTCAAAAGGGTCCTGCTGGGGTTAGTGTGATCATG
GTGAGTCTGATCATAGTGATCATGTCCACTGCGGCTATGAGCTGCTCGAAGAAGGCGGCCACCGACGAGAAGACGTCCTG
GCCGGAGGTGGTAGGGTTGAGCGTGGAGAAGGCCAAGGAGATCATCCTCAAGGACAAGCCCGACGCCGACATCGTCGTCC
TCCCCGTTGGCTCGCCGGTCACCAAGGACTACAGGTCCCAGCGCGTCCGCATCTTCGTTGACATCGTCGCCGAGACCCCC
CACACTGGCTAGCTAAGCTACCTGCCTAAACA------------------------------------------------
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-----------------------------------------------------------TAAGTATTTATTTTTGTCAAG
GGTATACA-TGGACGAATAATTTCATATACGCCCGCCGCATATGGATCAATGCATGGATGTCACGGGTTTGTGTGCTAGC
TCTTGGATCCTTGATATTGCATCTATTTCTTTATGAGTTTTTTTTC-CTAT--TGGTTGGACGGAGTTGGATTATCTTCT
GGCCACCCTTGGTGTCGGCTTCTCCAGGATGTCGGTCTATGTTGAGGACTTTTCAGGAACTTCTTGTATAAACTTCTGGG
TTTCAGTGAGGCGGTGGCGATGCTCAAAGCACCAACGACCGACATGTCACAACACCGCTCTCTCGTCGAAGAGATTAGCA
GC--AGCACGCCGTCATGCTAAAGAGCTTGTATTTGTGCAGTGTAGCTGTTGGCAGAATACCGCGAGTCATGAGTTGGCC
GCGTATAGCCGTAGCACCCCACGTACGGCAGTCTGGTTCACAGGTGGACTGAACTTTCTTGTAAACTTGGTTAAGGCCGA
GAGGCCTCCTTGGGTAATGAAAGTTTTTTTTCTCCCGC---AAAAAAAACTTCTAGGTTTCAGCAAGATTGCATGAGATA
GAGGTCCGAGCTAGCTTTGCTCA--------CGGCAAACTCAGATGGATGCAAAAAGAAGACGGTTCAATTTCCTAA-AG
GACTTGCCTCTAATTTCTTGTTATTCTAAGGAAGTTTTTGCAAGGGCCTTTTCTAGGAAAAGCCAGTGATCAACTGGCAG
ATCTTTTCTCTCACATCCGCCATGTTCTA-----GACACACGTTTTGATGGGCCAGCACACCGCTTTTCTCCTTCTT-CC
TATCTCCACCGAAATGGCCGCATATATTTATCTCTCCTTTCCATGAGTTGAATCAAACCTTCACCCGCAACCTCTTTCTG
GATCTCATCTGACCATGCAGAGCGTTCCGTACTCCAATTCTTGCAACTAGGCACTTGTTTCAAAAA--------------
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>chr5B_1
AGGCAAGAACGAGATATGAACCACGTACGGTTGTTACTTTATGTACTGACAAAGCAAAAACGAATATGAGGGTACGTTCA
GTTAAGAATAATGCATGCGCAATGCATGGACTTTTGGATAATACTTTCTGTATCATCGCCATCAG-------TATGCTCC
CTCAGTTTACGAATAAGATGTTTTGGACATTTCAAATATTTTTTTTGCGAAGGTTGGACATTTCAAATAGGCTACATATA
AACTGAAATGAATAAACAAATACATTAAAACATGTTTATATACATTCGATTTCATAAAACTGAAAACATTTTAT--TTGT
GAACGGAGGGAGTACGTATGCCGTTCTTGTCAATGGTCATATACTCATATGCGGGAAAAGTACCAAGTGATA-CAACACC
TTAAATGCTCCCATGATACCAACTTTGAGATAACAAATTTAAATGTTTCAAGAATTTCTGATTTTTTTGTGAATGTTCAC
AACATATGTGACTACAACCCCTAAAAAAGTCA-GATCAAAATTCAAAATACACATTAAGAAACAAAAGCGACAAATCTGG
AATGAAAAGTGTCAAAAAAGTCAAAAACAGAATTGACACTGTTCATATCTGGATTTGTCTTTTTTATTTCTCATTGTAAA
TTTCGATTTTCAACCTGAATTTTTCAGCAGTTGTAGACACATTCCTTGTGAACCTTAACATTTTTGAAGTTTTTTTTTTT
GAAACTAGAATTGAC----TTTTTTGAAATTGTAGCATGGGAGCACGTGCGTCTTGAT---ACTGGATATTCTCCCATCA
TATGCGTGCTAGCGAGCATTAATTTGGGCCAGCTGGTCAACGACTCGATGCGCGGGACAGATACTTAATTTCACATCATG
G-ATCGTCAACTGATCCAGCTCGCGATCAGTTTAGTACTCCCTCCGTTTCAAAAAATTTGTCTTGGATATCTAGACAAGT
GACTTGATACACCCGTATCTAGACAAATATAAGACAAGAAGTTTGAGACGGAGGGAATACTAACATCGCATATACTACTC
CAGTGTATATTTATATCCTATAAATAGGAGTAGTGTTGTTCGGGGATCGATCACATAGCTAGCTGTCACATATAGCACGT
TGATTGGGCAAACACATCACACAGGAAAGTATTACTCCATGGGAGGTCAAAAGGGTCCTGCTGGGGTTAGTGTGATCATC
GTGGGTCTGATCATAGTGATCATGGCCACTGCGGCTATGAGCTGCTCGGAGAAGGTAGCCACCAACAAGAAGACGTCGTG
GCCGGAGGTGGTAGGGCTGAGCGTGGAGAAGGCCAAGGAGATCATCCTCACGGACAAGCCCGACGCCGACATCGTCGTCC
TCCCCGTCGGCTCGCCGGTCACCAAGGACTACAGGTCCGAGCGTGTCCGCATCTTCATTGACACCGTCGCCGAGATCCCC
CACACTGGCTAGCTAAGCTATCTGCCTGAACATAAGGTCATGCTTGGATCCAAGGGACTATTTTTAGTCTGACTAAAACT
AGTCTCTTTTAGAGGCTAAAGTTTCAATCACCCCTGACTAAAGAGAGGCTAGAACTAGTCTTGAGACTAAAATTTTTTAG
TCAGGGGAACCCTACTAAAATGTGGATTAGTTCTCTCTCTCCTCATTTAACTCCTCTCCTTTAACATATGCGAGTTCGGG
ATTGGAGGGTTTGGAGGATAATAAATGCTCATTAACTCATTTTAGTCTATTTAGTATTTGTATCCAAGCATGTGTGAGGC
TAGCAAGTTTTAGTCCCATTACTTTTAGTCATGGGACTAAAACGTATCCAAGCACCCTCTAAGTATTTCTTTTTGTCAAG
GGTATACTTTGGACCAATAATTTCATATACGCCCGCTCCATATGGATCAATGCATGGATGTCATGGGTTTGTGTGCTAGC
TCTTGGATCCCTCGTATTGCATCTTTTTCTTTATGAGCTTTTTTTC-CCTATATGGTTGGACGGAGTTGGATTATCTTCG
GGCCACCCTTGGTGTCGGCTTCTCCAAGATGTTGGTCTATGTTGACAACTTTTCAGGCACTTCTTGTATAAACTTCTGGG
TTTCAG--------------------------------------------------------------------------
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---------------------------------------------------------------CAAGGTTGCATGAGCCA
GAGGTCCGAGCTAGCTTTGCTCA--------CGGCGAGCTCAGATGGATGCAGAAAGAAGACGGTTAATTTCCTTAAAAG
GACTTGCCTCTAATTTCTTGTTATTCTAAGAAAGTTTT--CAAGGGCTTTTTTTAG------------------------
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>SNPs
----------------------------S-------------------------------------------S-------
----------S-----------------------------------------------------SSSSSSSS--------
----SS------------S---------------------------------------------------S---------
--------S------------------------S---------------------S----------------------S-
----S------S----------------S-----------------------S-------SSS---------S-------
----------S--------------------------------S----------S--S-----S----S-----------
--S--------------------------SSSS-----------------------------------------------
-----------------------------------------------S--------------------------------
------------------------------------------------------------S----S-SS-------SS--
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-----------------------S--------------------------------------------------------
---------------------------------------------------------------------------S----
------S---S-S-------------------S-------------------------------------S---------
-------------------------------------------SSS--------------------------S-------
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------------------------S-------------------------------------------------------
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----------------------------------------S--------------S-----------S--S---------
----------------------------------------------S--------S----S-------------------
--S-----------------------------------------------------------------------------
------------------------S--------------S----S------------------S--S----S--------
--SS-----------------S------------SS---------S-S-----S--------------------------
------S-------------------S------------SS---S----S-S----------------------------
------------S----------------SS-S-SSSSSSS-------------SS------------------------
-----------------------SSSSSSSS-------------------------------------------------
---------------------------------------------------------------S--------------S-
------------------S------S---SSSSS-----S---S--------S----S--S-----S--------S-S--
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------------------------S--SS------S------------------S-----------SSSSSSSSSSSSSS
SSSSS
>forward_146
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----------------------------------------------TCTGTGTCATCGCCATCACC--------------
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>reverse_1166
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---------------------------------------------TTCAAAAGGGTCCTGCTGGG---------------
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>forward_904
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----CGTCAACTGATCCAGCTCGA--------------------------------------------------------
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>reverse_2267
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--------------------------ACAGTCTGGTTCGTAGGAGGA---------------------------------
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