Multiple sequence alignment - TraesCS5D01G266700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G266700 chr5D 100.000 2366 0 0 1 2366 370817670 370820035 0.000000e+00 4370
1 TraesCS5D01G266700 chr5D 97.826 138 0 2 1536 1673 370819073 370819207 3.930000e-58 235
2 TraesCS5D01G266700 chr5D 97.826 138 0 2 1404 1538 370819205 370819342 3.930000e-58 235
3 TraesCS5D01G266700 chr5D 75.453 497 86 25 1889 2365 49155317 49154837 2.380000e-50 209
4 TraesCS5D01G266700 chr5D 84.795 171 15 9 2198 2364 370832410 370832573 6.770000e-36 161
5 TraesCS5D01G266700 chr5A 92.230 888 41 10 669 1538 473407238 473408115 0.000000e+00 1232
6 TraesCS5D01G266700 chr5A 89.862 434 23 8 1941 2366 473454539 473454959 2.680000e-149 538
7 TraesCS5D01G266700 chr5A 88.235 306 17 10 2079 2366 473409482 473409786 4.840000e-92 348
8 TraesCS5D01G266700 chr5A 83.232 328 39 9 9 327 473406698 473407018 1.070000e-73 287
9 TraesCS5D01G266700 chr5A 85.816 282 9 7 1536 1789 473407973 473408251 1.080000e-68 270
10 TraesCS5D01G266700 chr5A 92.222 180 10 3 1858 2036 473408271 473408447 3.900000e-63 252
11 TraesCS5D01G266700 chr5A 85.641 195 17 6 2175 2365 38782895 38782708 6.670000e-46 195
12 TraesCS5D01G266700 chr5B 91.543 875 43 7 652 1517 440178633 440179485 0.000000e+00 1177
13 TraesCS5D01G266700 chr5B 95.495 555 18 2 1816 2366 440181306 440181857 0.000000e+00 880
14 TraesCS5D01G266700 chr5B 85.981 214 26 3 27 240 440177928 440178137 2.370000e-55 226
15 TraesCS5D01G266700 chr5B 89.266 177 16 2 2193 2366 440201141 440201317 3.960000e-53 219
16 TraesCS5D01G266700 chr5B 84.103 195 20 6 2175 2365 51865772 51865585 6.720000e-41 178
17 TraesCS5D01G266700 chr5B 83.333 174 16 8 2198 2364 440220873 440221040 5.270000e-32 148
18 TraesCS5D01G266700 chr5B 89.744 117 9 1 1536 1652 440179372 440179485 1.890000e-31 147
19 TraesCS5D01G266700 chr5B 100.000 68 0 0 1646 1713 440181239 440181306 2.470000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G266700 chr5D 370817670 370820035 2365 False 1613.333333 4370 98.550667 1 2366 3 chr5D.!!$F2 2365
1 TraesCS5D01G266700 chr5A 473406698 473409786 3088 False 477.800000 1232 88.347000 9 2366 5 chr5A.!!$F2 2357
2 TraesCS5D01G266700 chr5B 440177928 440181857 3929 False 511.200000 1177 92.552600 27 2366 5 chr5B.!!$F3 2339

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
640 938 0.033208 TGATCCAGCCCCATTTCACC 60.033 55.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1541 1869 0.108615 GCACTGAGCACTACGTGGAT 60.109 55.0 5.7 0.0 44.79 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.956075 TCAGGAAAGGGAAGGATTTTATGC 59.044 41.667 0.00 0.00 0.00 3.14
44 45 1.072331 GCACCTCCAACTCCTCTTCAA 59.928 52.381 0.00 0.00 0.00 2.69
54 55 3.607741 ACTCCTCTTCAACATGCAGATG 58.392 45.455 0.00 0.00 35.49 2.90
96 97 9.969001 ACTAAACCAAGCTCTAAATACCAATTA 57.031 29.630 0.00 0.00 0.00 1.40
111 112 2.421388 CCAATTATGAGACCCAAGGCGA 60.421 50.000 0.00 0.00 0.00 5.54
133 134 6.519315 CGATCATCAAAAGAACAATTTGCAC 58.481 36.000 0.00 0.00 37.62 4.57
139 140 7.236674 TCAAAAGAACAATTTGCACTCAATG 57.763 32.000 0.00 0.00 37.62 2.82
153 154 4.319766 GCACTCAATGACACACAAAGTAGG 60.320 45.833 0.00 0.00 0.00 3.18
158 159 7.026631 TCAATGACACACAAAGTAGGAAAAG 57.973 36.000 0.00 0.00 0.00 2.27
198 199 7.513371 TTAATTTCAAGAAACTTAGGCGGAA 57.487 32.000 0.00 0.00 32.51 4.30
202 203 7.513371 TTTCAAGAAACTTAGGCGGAATTAA 57.487 32.000 0.00 0.00 0.00 1.40
205 206 6.370718 TCAAGAAACTTAGGCGGAATTAAGAC 59.629 38.462 0.00 0.00 32.52 3.01
206 207 5.801380 AGAAACTTAGGCGGAATTAAGACA 58.199 37.500 0.00 0.00 32.52 3.41
207 208 5.642491 AGAAACTTAGGCGGAATTAAGACAC 59.358 40.000 0.00 0.00 32.52 3.67
208 209 4.546829 ACTTAGGCGGAATTAAGACACA 57.453 40.909 0.00 0.00 32.52 3.72
209 210 5.099042 ACTTAGGCGGAATTAAGACACAT 57.901 39.130 0.00 0.00 32.52 3.21
210 211 5.116882 ACTTAGGCGGAATTAAGACACATC 58.883 41.667 0.00 0.00 32.52 3.06
211 212 3.914426 AGGCGGAATTAAGACACATCT 57.086 42.857 0.00 0.00 36.42 2.90
217 220 4.511826 CGGAATTAAGACACATCTAAGGGC 59.488 45.833 0.00 0.00 33.57 5.19
221 224 7.226918 GGAATTAAGACACATCTAAGGGCTAAC 59.773 40.741 0.00 0.00 33.57 2.34
232 235 2.861147 AGGGCTAACCAGAAACACTC 57.139 50.000 0.00 0.00 43.89 3.51
249 252 3.056465 ACACTCACAGCTAGAGTTTAGCC 60.056 47.826 16.06 0.00 43.47 3.93
252 255 1.555075 CACAGCTAGAGTTTAGCCCCA 59.445 52.381 8.99 0.00 41.25 4.96
253 256 2.027192 CACAGCTAGAGTTTAGCCCCAA 60.027 50.000 8.99 0.00 41.25 4.12
254 257 2.846827 ACAGCTAGAGTTTAGCCCCAAT 59.153 45.455 8.99 0.00 41.25 3.16
255 258 4.037927 ACAGCTAGAGTTTAGCCCCAATA 58.962 43.478 8.99 0.00 41.25 1.90
256 259 4.660771 ACAGCTAGAGTTTAGCCCCAATAT 59.339 41.667 8.99 0.00 41.25 1.28
286 289 5.883673 AGTAGAACGAGCTCTAAGACTTCAT 59.116 40.000 12.85 0.00 29.74 2.57
287 290 5.652994 AGAACGAGCTCTAAGACTTCATT 57.347 39.130 12.85 0.00 0.00 2.57
288 291 6.761099 AGAACGAGCTCTAAGACTTCATTA 57.239 37.500 12.85 0.00 0.00 1.90
293 301 6.017440 ACGAGCTCTAAGACTTCATTAGCTAG 60.017 42.308 12.85 12.86 31.57 3.42
294 302 6.084326 AGCTCTAAGACTTCATTAGCTAGC 57.916 41.667 6.62 6.62 33.50 3.42
295 303 5.833131 AGCTCTAAGACTTCATTAGCTAGCT 59.167 40.000 23.12 23.12 36.42 3.32
329 337 3.282885 GGAATCCAGTTTGGCTCTAAGG 58.717 50.000 0.00 0.00 37.47 2.69
333 613 3.181329 TCCAGTTTGGCTCTAAGGATGA 58.819 45.455 0.00 0.00 37.47 2.92
334 614 3.587061 TCCAGTTTGGCTCTAAGGATGAA 59.413 43.478 0.00 0.00 37.47 2.57
350 630 4.097892 AGGATGAACGCCCAAAATGTATTC 59.902 41.667 0.00 0.00 0.00 1.75
353 633 2.939460 ACGCCCAAAATGTATTCTGC 57.061 45.000 0.00 0.00 0.00 4.26
355 635 2.164219 ACGCCCAAAATGTATTCTGCAG 59.836 45.455 7.63 7.63 0.00 4.41
364 644 8.127327 CCAAAATGTATTCTGCAGATGTCTAAG 58.873 37.037 19.04 3.38 0.00 2.18
370 650 9.453572 TGTATTCTGCAGATGTCTAAGAAAATT 57.546 29.630 19.04 0.00 33.97 1.82
371 651 9.713740 GTATTCTGCAGATGTCTAAGAAAATTG 57.286 33.333 19.04 0.00 33.97 2.32
374 654 8.037382 TCTGCAGATGTCTAAGAAAATTGAAG 57.963 34.615 13.74 0.00 0.00 3.02
378 658 9.852091 GCAGATGTCTAAGAAAATTGAAGAAAT 57.148 29.630 0.00 0.00 0.00 2.17
397 677 7.117241 AGAAATATGTGTTAACTGTCACACG 57.883 36.000 7.22 0.00 45.37 4.49
398 678 6.926826 AGAAATATGTGTTAACTGTCACACGA 59.073 34.615 7.22 8.50 45.37 4.35
399 679 7.439955 AGAAATATGTGTTAACTGTCACACGAA 59.560 33.333 7.22 8.38 45.37 3.85
401 681 4.587211 TGTGTTAACTGTCACACGAAAC 57.413 40.909 7.22 0.00 45.37 2.78
411 691 2.985139 GTCACACGAAACTGCTACCTAC 59.015 50.000 0.00 0.00 0.00 3.18
424 704 8.473358 AACTGCTACCTACAAATTTTTAAGGT 57.527 30.769 16.24 16.24 38.51 3.50
425 705 7.882179 ACTGCTACCTACAAATTTTTAAGGTG 58.118 34.615 19.32 12.97 36.76 4.00
429 709 9.406828 GCTACCTACAAATTTTTAAGGTGAAAG 57.593 33.333 19.32 12.90 36.76 2.62
446 726 6.045955 GGTGAAAGCTTAAACATTTTGACCA 58.954 36.000 0.00 0.00 36.96 4.02
447 727 6.200854 GGTGAAAGCTTAAACATTTTGACCAG 59.799 38.462 0.00 0.00 36.96 4.00
448 728 6.756542 GTGAAAGCTTAAACATTTTGACCAGT 59.243 34.615 0.00 0.00 0.00 4.00
487 783 9.522804 TGACAAATGTTACACTTAATTTTGGTC 57.477 29.630 10.33 3.48 32.60 4.02
503 801 8.593492 AATTTTGGTCTTTTCATAGACAAAGC 57.407 30.769 6.17 0.00 45.07 3.51
504 802 6.707440 TTTGGTCTTTTCATAGACAAAGCA 57.293 33.333 6.17 0.00 45.07 3.91
505 803 6.899393 TTGGTCTTTTCATAGACAAAGCAT 57.101 33.333 6.17 0.00 45.07 3.79
506 804 6.899393 TGGTCTTTTCATAGACAAAGCATT 57.101 33.333 6.17 0.00 45.07 3.56
507 805 6.680810 TGGTCTTTTCATAGACAAAGCATTG 58.319 36.000 0.00 0.00 45.07 2.82
508 806 5.574443 GGTCTTTTCATAGACAAAGCATTGC 59.426 40.000 0.68 0.00 45.07 3.56
509 807 6.385033 GTCTTTTCATAGACAAAGCATTGCT 58.615 36.000 5.03 5.03 43.23 3.91
510 808 7.362056 GGTCTTTTCATAGACAAAGCATTGCTA 60.362 37.037 12.39 5.12 45.07 3.49
511 809 8.186821 GTCTTTTCATAGACAAAGCATTGCTAT 58.813 33.333 12.39 7.11 43.23 2.97
512 810 8.400947 TCTTTTCATAGACAAAGCATTGCTATC 58.599 33.333 12.39 10.11 38.25 2.08
513 811 6.624352 TTCATAGACAAAGCATTGCTATCC 57.376 37.500 12.39 2.14 38.25 2.59
514 812 4.751600 TCATAGACAAAGCATTGCTATCCG 59.248 41.667 12.39 3.47 38.25 4.18
515 813 2.292267 AGACAAAGCATTGCTATCCGG 58.708 47.619 12.39 0.00 38.25 5.14
516 814 2.017049 GACAAAGCATTGCTATCCGGT 58.983 47.619 12.39 5.99 38.25 5.28
517 815 2.423538 GACAAAGCATTGCTATCCGGTT 59.576 45.455 12.39 0.00 38.25 4.44
518 816 2.825532 ACAAAGCATTGCTATCCGGTTT 59.174 40.909 12.39 0.00 38.25 3.27
519 817 3.258123 ACAAAGCATTGCTATCCGGTTTT 59.742 39.130 12.39 0.00 38.25 2.43
520 818 3.782889 AAGCATTGCTATCCGGTTTTC 57.217 42.857 12.39 0.00 38.25 2.29
521 819 2.722094 AGCATTGCTATCCGGTTTTCA 58.278 42.857 10.00 0.00 36.99 2.69
522 820 2.423538 AGCATTGCTATCCGGTTTTCAC 59.576 45.455 10.00 0.00 36.99 3.18
523 821 2.163412 GCATTGCTATCCGGTTTTCACA 59.837 45.455 0.00 0.00 0.00 3.58
524 822 3.181487 GCATTGCTATCCGGTTTTCACAT 60.181 43.478 0.00 0.00 0.00 3.21
525 823 4.036262 GCATTGCTATCCGGTTTTCACATA 59.964 41.667 0.00 0.00 0.00 2.29
526 824 5.449862 GCATTGCTATCCGGTTTTCACATAA 60.450 40.000 0.00 0.00 0.00 1.90
527 825 6.559810 CATTGCTATCCGGTTTTCACATAAA 58.440 36.000 0.00 0.00 0.00 1.40
528 826 6.576662 TTGCTATCCGGTTTTCACATAAAA 57.423 33.333 0.00 0.00 0.00 1.52
529 827 6.576662 TGCTATCCGGTTTTCACATAAAAA 57.423 33.333 0.00 0.00 0.00 1.94
530 828 6.383415 TGCTATCCGGTTTTCACATAAAAAC 58.617 36.000 0.00 4.14 44.62 2.43
531 829 6.207810 TGCTATCCGGTTTTCACATAAAAACT 59.792 34.615 0.00 0.00 44.69 2.66
533 831 5.838531 TCCGGTTTTCACATAAAAACTGT 57.161 34.783 15.89 0.00 46.78 3.55
534 832 5.583495 TCCGGTTTTCACATAAAAACTGTG 58.417 37.500 15.89 9.92 46.78 3.66
535 833 5.357314 TCCGGTTTTCACATAAAAACTGTGA 59.643 36.000 15.89 2.19 46.78 3.58
542 840 5.186996 CACATAAAAACTGTGAAGCACCT 57.813 39.130 0.00 0.00 45.44 4.00
543 841 5.591099 CACATAAAAACTGTGAAGCACCTT 58.409 37.500 0.00 0.00 45.44 3.50
544 842 6.042143 CACATAAAAACTGTGAAGCACCTTT 58.958 36.000 0.00 0.00 45.44 3.11
545 843 7.199766 CACATAAAAACTGTGAAGCACCTTTA 58.800 34.615 0.00 0.00 45.44 1.85
546 844 7.867403 CACATAAAAACTGTGAAGCACCTTTAT 59.133 33.333 0.00 0.00 45.44 1.40
547 845 8.421002 ACATAAAAACTGTGAAGCACCTTTATT 58.579 29.630 0.00 0.00 32.73 1.40
548 846 9.906660 CATAAAAACTGTGAAGCACCTTTATTA 57.093 29.630 0.00 0.00 32.73 0.98
549 847 9.908152 ATAAAAACTGTGAAGCACCTTTATTAC 57.092 29.630 0.00 0.00 32.73 1.89
550 848 6.952773 AAACTGTGAAGCACCTTTATTACA 57.047 33.333 0.00 0.00 32.73 2.41
551 849 5.941948 ACTGTGAAGCACCTTTATTACAC 57.058 39.130 0.00 0.00 32.73 2.90
552 850 5.621193 ACTGTGAAGCACCTTTATTACACT 58.379 37.500 0.00 0.00 32.73 3.55
553 851 6.765403 ACTGTGAAGCACCTTTATTACACTA 58.235 36.000 0.00 0.00 32.73 2.74
554 852 7.221450 ACTGTGAAGCACCTTTATTACACTAA 58.779 34.615 0.00 0.00 32.73 2.24
555 853 7.172703 ACTGTGAAGCACCTTTATTACACTAAC 59.827 37.037 0.00 0.00 32.73 2.34
556 854 6.993308 TGTGAAGCACCTTTATTACACTAACA 59.007 34.615 0.00 0.00 32.73 2.41
557 855 7.663905 TGTGAAGCACCTTTATTACACTAACAT 59.336 33.333 0.00 0.00 32.73 2.71
558 856 9.158233 GTGAAGCACCTTTATTACACTAACATA 57.842 33.333 0.00 0.00 0.00 2.29
559 857 9.727859 TGAAGCACCTTTATTACACTAACATAA 57.272 29.630 0.00 0.00 0.00 1.90
562 860 9.509956 AGCACCTTTATTACACTAACATAAACA 57.490 29.630 0.00 0.00 0.00 2.83
613 911 9.902684 TTATTTACTAAATTTACCGTCCATCCA 57.097 29.630 0.00 0.00 32.38 3.41
614 912 8.810990 ATTTACTAAATTTACCGTCCATCCAA 57.189 30.769 0.00 0.00 0.00 3.53
615 913 8.632906 TTTACTAAATTTACCGTCCATCCAAA 57.367 30.769 0.00 0.00 0.00 3.28
616 914 6.753107 ACTAAATTTACCGTCCATCCAAAG 57.247 37.500 0.00 0.00 0.00 2.77
617 915 4.450082 AAATTTACCGTCCATCCAAAGC 57.550 40.909 0.00 0.00 0.00 3.51
618 916 2.570415 TTTACCGTCCATCCAAAGCA 57.430 45.000 0.00 0.00 0.00 3.91
619 917 2.799126 TTACCGTCCATCCAAAGCAT 57.201 45.000 0.00 0.00 0.00 3.79
620 918 2.036958 TACCGTCCATCCAAAGCATG 57.963 50.000 0.00 0.00 0.00 4.06
621 919 0.038166 ACCGTCCATCCAAAGCATGT 59.962 50.000 0.00 0.00 0.00 3.21
622 920 0.452987 CCGTCCATCCAAAGCATGTG 59.547 55.000 0.00 0.00 0.00 3.21
623 921 1.452110 CGTCCATCCAAAGCATGTGA 58.548 50.000 0.00 0.00 0.00 3.58
624 922 2.019249 CGTCCATCCAAAGCATGTGAT 58.981 47.619 0.00 0.00 0.00 3.06
625 923 2.032550 CGTCCATCCAAAGCATGTGATC 59.967 50.000 0.00 0.00 0.00 2.92
626 924 2.360165 GTCCATCCAAAGCATGTGATCC 59.640 50.000 0.00 0.00 0.00 3.36
627 925 2.025131 TCCATCCAAAGCATGTGATCCA 60.025 45.455 0.00 0.00 0.00 3.41
628 926 2.361119 CCATCCAAAGCATGTGATCCAG 59.639 50.000 0.00 0.00 0.00 3.86
629 927 1.466856 TCCAAAGCATGTGATCCAGC 58.533 50.000 0.00 0.00 0.00 4.85
630 928 0.458669 CCAAAGCATGTGATCCAGCC 59.541 55.000 0.00 0.00 0.00 4.85
631 929 0.458669 CAAAGCATGTGATCCAGCCC 59.541 55.000 0.00 0.00 0.00 5.19
632 930 0.685458 AAAGCATGTGATCCAGCCCC 60.685 55.000 0.00 0.00 0.00 5.80
633 931 1.866483 AAGCATGTGATCCAGCCCCA 61.866 55.000 0.00 0.00 0.00 4.96
634 932 1.152610 GCATGTGATCCAGCCCCAT 60.153 57.895 0.00 0.00 0.00 4.00
635 933 0.757935 GCATGTGATCCAGCCCCATT 60.758 55.000 0.00 0.00 0.00 3.16
636 934 1.784358 CATGTGATCCAGCCCCATTT 58.216 50.000 0.00 0.00 0.00 2.32
637 935 1.684983 CATGTGATCCAGCCCCATTTC 59.315 52.381 0.00 0.00 0.00 2.17
638 936 0.703488 TGTGATCCAGCCCCATTTCA 59.297 50.000 0.00 0.00 0.00 2.69
639 937 1.106285 GTGATCCAGCCCCATTTCAC 58.894 55.000 0.00 0.00 0.00 3.18
640 938 0.033208 TGATCCAGCCCCATTTCACC 60.033 55.000 0.00 0.00 0.00 4.02
641 939 0.259938 GATCCAGCCCCATTTCACCT 59.740 55.000 0.00 0.00 0.00 4.00
642 940 1.494721 GATCCAGCCCCATTTCACCTA 59.505 52.381 0.00 0.00 0.00 3.08
643 941 0.623723 TCCAGCCCCATTTCACCTAC 59.376 55.000 0.00 0.00 0.00 3.18
644 942 0.748005 CCAGCCCCATTTCACCTACG 60.748 60.000 0.00 0.00 0.00 3.51
645 943 0.251916 CAGCCCCATTTCACCTACGA 59.748 55.000 0.00 0.00 0.00 3.43
646 944 1.134098 CAGCCCCATTTCACCTACGAT 60.134 52.381 0.00 0.00 0.00 3.73
647 945 1.564348 AGCCCCATTTCACCTACGATT 59.436 47.619 0.00 0.00 0.00 3.34
648 946 1.947456 GCCCCATTTCACCTACGATTC 59.053 52.381 0.00 0.00 0.00 2.52
649 947 2.421529 GCCCCATTTCACCTACGATTCT 60.422 50.000 0.00 0.00 0.00 2.40
650 948 3.467803 CCCCATTTCACCTACGATTCTC 58.532 50.000 0.00 0.00 0.00 2.87
651 949 3.134804 CCCCATTTCACCTACGATTCTCT 59.865 47.826 0.00 0.00 0.00 3.10
663 961 2.494073 ACGATTCTCTCTGACTCAACCC 59.506 50.000 0.00 0.00 0.00 4.11
723 1035 1.934463 CGCAGATCAATGTACCCGC 59.066 57.895 0.00 0.00 0.00 6.13
757 1069 0.527817 GCTACGTGTCGCCTAAGCAT 60.528 55.000 0.00 0.00 39.83 3.79
759 1071 0.101759 TACGTGTCGCCTAAGCATCC 59.898 55.000 0.00 0.00 39.83 3.51
837 1150 2.042843 CTAGGTGGCCTCGGGACT 60.043 66.667 3.32 0.00 34.61 3.85
846 1159 2.435586 CTCGGGACTTGCAGCAGG 60.436 66.667 2.26 2.26 0.00 4.85
878 1191 0.106369 ATCGACTCCACCGTCCCATA 60.106 55.000 0.00 0.00 0.00 2.74
879 1192 0.106369 TCGACTCCACCGTCCCATAT 60.106 55.000 0.00 0.00 0.00 1.78
881 1194 0.680061 GACTCCACCGTCCCATATCC 59.320 60.000 0.00 0.00 0.00 2.59
883 1196 1.352083 CTCCACCGTCCCATATCCAT 58.648 55.000 0.00 0.00 0.00 3.41
901 1214 4.832248 TCCATCTCGTATAAATCCATGGC 58.168 43.478 6.96 0.00 31.12 4.40
937 1250 2.180276 GGATAGGGACACACACACTCT 58.820 52.381 0.00 0.00 0.00 3.24
938 1251 2.166664 GGATAGGGACACACACACTCTC 59.833 54.545 0.00 0.00 0.00 3.20
975 1295 2.910199 TCGAGCATCCAATCCAGAAAG 58.090 47.619 0.00 0.00 0.00 2.62
1191 1519 2.758737 GTCTCCGACGTCCCCCAT 60.759 66.667 10.58 0.00 0.00 4.00
1192 1520 1.454479 GTCTCCGACGTCCCCCATA 60.454 63.158 10.58 0.00 0.00 2.74
1331 1659 4.813526 CGACGACGACGAGGCTGG 62.814 72.222 15.32 0.00 42.66 4.85
1372 1700 2.461110 GGCGTGCCGTAGTTCATGG 61.461 63.158 0.00 0.00 36.25 3.66
1373 1701 2.461110 GCGTGCCGTAGTTCATGGG 61.461 63.158 0.00 0.00 33.38 4.00
1374 1702 1.079405 CGTGCCGTAGTTCATGGGT 60.079 57.895 0.00 0.00 33.38 4.51
1375 1703 1.082117 CGTGCCGTAGTTCATGGGTC 61.082 60.000 0.00 0.00 33.38 4.46
1376 1704 0.036765 GTGCCGTAGTTCATGGGTCA 60.037 55.000 0.00 0.00 33.38 4.02
1377 1705 0.908910 TGCCGTAGTTCATGGGTCAT 59.091 50.000 0.00 0.00 33.38 3.06
1378 1706 1.299541 GCCGTAGTTCATGGGTCATG 58.700 55.000 1.76 1.76 42.60 3.07
1400 1728 1.068434 CTAGGCTGTCTTGCTAGCTCC 59.932 57.143 17.23 5.67 39.80 4.70
1443 1771 4.337177 TGCGCGTGGGGGAATGAA 62.337 61.111 8.43 0.00 0.00 2.57
1444 1772 2.828549 GCGCGTGGGGGAATGAAT 60.829 61.111 8.43 0.00 0.00 2.57
1445 1773 1.525077 GCGCGTGGGGGAATGAATA 60.525 57.895 8.43 0.00 0.00 1.75
1446 1774 1.098712 GCGCGTGGGGGAATGAATAA 61.099 55.000 8.43 0.00 0.00 1.40
1447 1775 1.384525 CGCGTGGGGGAATGAATAAA 58.615 50.000 0.00 0.00 0.00 1.40
1448 1776 1.333619 CGCGTGGGGGAATGAATAAAG 59.666 52.381 0.00 0.00 0.00 1.85
1449 1777 2.375146 GCGTGGGGGAATGAATAAAGT 58.625 47.619 0.00 0.00 0.00 2.66
1450 1778 2.758423 GCGTGGGGGAATGAATAAAGTT 59.242 45.455 0.00 0.00 0.00 2.66
1451 1779 3.428862 GCGTGGGGGAATGAATAAAGTTG 60.429 47.826 0.00 0.00 0.00 3.16
1452 1780 3.130340 CGTGGGGGAATGAATAAAGTTGG 59.870 47.826 0.00 0.00 0.00 3.77
1453 1781 4.093743 GTGGGGGAATGAATAAAGTTGGT 58.906 43.478 0.00 0.00 0.00 3.67
1454 1782 5.265989 GTGGGGGAATGAATAAAGTTGGTA 58.734 41.667 0.00 0.00 0.00 3.25
1455 1783 5.717654 GTGGGGGAATGAATAAAGTTGGTAA 59.282 40.000 0.00 0.00 0.00 2.85
1456 1784 6.382859 GTGGGGGAATGAATAAAGTTGGTAAT 59.617 38.462 0.00 0.00 0.00 1.89
1457 1785 6.382570 TGGGGGAATGAATAAAGTTGGTAATG 59.617 38.462 0.00 0.00 0.00 1.90
1458 1786 6.382859 GGGGGAATGAATAAAGTTGGTAATGT 59.617 38.462 0.00 0.00 0.00 2.71
1459 1787 7.562088 GGGGGAATGAATAAAGTTGGTAATGTA 59.438 37.037 0.00 0.00 0.00 2.29
1460 1788 8.973182 GGGGAATGAATAAAGTTGGTAATGTAA 58.027 33.333 0.00 0.00 0.00 2.41
1466 1794 9.562583 TGAATAAAGTTGGTAATGTAAAATCGC 57.437 29.630 0.00 0.00 0.00 4.58
1467 1795 9.783256 GAATAAAGTTGGTAATGTAAAATCGCT 57.217 29.630 0.00 0.00 0.00 4.93
1468 1796 9.567848 AATAAAGTTGGTAATGTAAAATCGCTG 57.432 29.630 0.00 0.00 0.00 5.18
1469 1797 5.560966 AGTTGGTAATGTAAAATCGCTGG 57.439 39.130 0.00 0.00 0.00 4.85
1470 1798 4.102649 GTTGGTAATGTAAAATCGCTGGC 58.897 43.478 0.00 0.00 0.00 4.85
1471 1799 3.348119 TGGTAATGTAAAATCGCTGGCA 58.652 40.909 0.00 0.00 0.00 4.92
1472 1800 3.759086 TGGTAATGTAAAATCGCTGGCAA 59.241 39.130 0.00 0.00 0.00 4.52
1473 1801 4.218635 TGGTAATGTAAAATCGCTGGCAAA 59.781 37.500 0.00 0.00 0.00 3.68
1474 1802 4.798387 GGTAATGTAAAATCGCTGGCAAAG 59.202 41.667 0.00 0.00 0.00 2.77
1486 1814 1.131883 CTGGCAAAGCATGTCTACAGC 59.868 52.381 0.00 0.00 33.68 4.40
1487 1815 1.167851 GGCAAAGCATGTCTACAGCA 58.832 50.000 0.00 0.00 0.00 4.41
1488 1816 1.747355 GGCAAAGCATGTCTACAGCAT 59.253 47.619 0.00 0.00 0.00 3.79
1489 1817 2.945008 GGCAAAGCATGTCTACAGCATA 59.055 45.455 0.00 0.00 0.00 3.14
1490 1818 3.378112 GGCAAAGCATGTCTACAGCATAA 59.622 43.478 0.00 0.00 0.00 1.90
1491 1819 4.037208 GGCAAAGCATGTCTACAGCATAAT 59.963 41.667 0.00 0.00 0.00 1.28
1492 1820 4.974275 GCAAAGCATGTCTACAGCATAATG 59.026 41.667 0.00 0.00 0.00 1.90
1493 1821 5.449588 GCAAAGCATGTCTACAGCATAATGT 60.450 40.000 0.00 0.00 37.19 2.71
1494 1822 6.238456 GCAAAGCATGTCTACAGCATAATGTA 60.238 38.462 0.00 0.00 34.56 2.29
1495 1823 7.521099 GCAAAGCATGTCTACAGCATAATGTAT 60.521 37.037 0.00 0.00 35.21 2.29
1496 1824 8.992073 CAAAGCATGTCTACAGCATAATGTATA 58.008 33.333 0.00 0.00 35.21 1.47
1497 1825 9.559732 AAAGCATGTCTACAGCATAATGTATAA 57.440 29.630 0.00 0.00 35.21 0.98
1498 1826 9.730705 AAGCATGTCTACAGCATAATGTATAAT 57.269 29.630 0.00 0.00 35.21 1.28
1536 1864 6.469782 AAAAACATCTTCCAAGAGCTTTGA 57.530 33.333 9.37 0.00 38.66 2.69
1537 1865 5.702349 AAACATCTTCCAAGAGCTTTGAG 57.298 39.130 9.37 2.27 38.66 3.02
1538 1866 3.683802 ACATCTTCCAAGAGCTTTGAGG 58.316 45.455 9.37 0.85 38.66 3.86
1539 1867 3.073650 ACATCTTCCAAGAGCTTTGAGGT 59.926 43.478 9.37 0.00 38.66 3.85
1540 1868 3.864789 TCTTCCAAGAGCTTTGAGGTT 57.135 42.857 9.37 0.00 0.00 3.50
1541 1869 4.974645 TCTTCCAAGAGCTTTGAGGTTA 57.025 40.909 9.37 0.00 0.00 2.85
1542 1870 5.505181 TCTTCCAAGAGCTTTGAGGTTAT 57.495 39.130 9.37 0.00 0.00 1.89
1543 1871 5.491982 TCTTCCAAGAGCTTTGAGGTTATC 58.508 41.667 9.37 0.00 0.00 1.75
1544 1872 4.222124 TCCAAGAGCTTTGAGGTTATCC 57.778 45.455 9.37 0.00 0.00 2.59
1545 1873 3.587061 TCCAAGAGCTTTGAGGTTATCCA 59.413 43.478 9.37 0.00 35.89 3.41
1546 1874 3.691609 CCAAGAGCTTTGAGGTTATCCAC 59.308 47.826 9.37 0.00 35.89 4.02
1547 1875 3.252974 AGAGCTTTGAGGTTATCCACG 57.747 47.619 0.00 0.00 35.89 4.94
1548 1876 2.567615 AGAGCTTTGAGGTTATCCACGT 59.432 45.455 0.00 0.00 35.89 4.49
1549 1877 3.767673 AGAGCTTTGAGGTTATCCACGTA 59.232 43.478 0.00 0.00 35.89 3.57
1550 1878 4.113354 GAGCTTTGAGGTTATCCACGTAG 58.887 47.826 0.00 0.00 35.89 3.51
1583 1911 3.194755 GCGTGGGGGAAAATGAATAAAGT 59.805 43.478 0.00 0.00 0.00 2.66
1629 1958 6.851222 AAGCATGTCTACAGCATAATGTAC 57.149 37.500 0.00 0.00 34.56 2.90
1632 1961 7.726216 AGCATGTCTACAGCATAATGTACTAA 58.274 34.615 0.00 0.00 34.56 2.24
1754 3862 2.492019 TTGATCTACACTCATCGGCG 57.508 50.000 0.00 0.00 0.00 6.46
1765 3873 2.107750 ATCGGCGCCTCTGATGTG 59.892 61.111 26.68 6.06 39.29 3.21
1789 3897 1.135344 AGGCGAGACTAACGAAAGCTC 60.135 52.381 0.00 0.00 0.00 4.09
1790 3898 1.135344 GGCGAGACTAACGAAAGCTCT 60.135 52.381 0.00 0.00 0.00 4.09
1791 3899 2.597520 GCGAGACTAACGAAAGCTCTT 58.402 47.619 0.00 0.00 0.00 2.85
1792 3900 2.595095 GCGAGACTAACGAAAGCTCTTC 59.405 50.000 0.00 0.00 0.00 2.87
1793 3901 3.172824 CGAGACTAACGAAAGCTCTTCC 58.827 50.000 0.00 0.00 0.00 3.46
1794 3902 3.366070 CGAGACTAACGAAAGCTCTTCCA 60.366 47.826 0.00 0.00 0.00 3.53
1795 3903 4.170256 GAGACTAACGAAAGCTCTTCCAG 58.830 47.826 0.00 0.00 0.00 3.86
1796 3904 3.827302 AGACTAACGAAAGCTCTTCCAGA 59.173 43.478 0.00 0.00 0.00 3.86
1797 3905 4.082463 AGACTAACGAAAGCTCTTCCAGAG 60.082 45.833 0.00 0.00 45.04 3.35
1798 3906 3.574826 ACTAACGAAAGCTCTTCCAGAGT 59.425 43.478 2.79 0.00 44.12 3.24
1799 3907 4.765856 ACTAACGAAAGCTCTTCCAGAGTA 59.234 41.667 2.79 0.00 44.12 2.59
1800 3908 4.810191 AACGAAAGCTCTTCCAGAGTAT 57.190 40.909 2.79 0.00 44.12 2.12
1801 3909 4.810191 ACGAAAGCTCTTCCAGAGTATT 57.190 40.909 2.79 0.00 44.12 1.89
1802 3910 5.153950 ACGAAAGCTCTTCCAGAGTATTT 57.846 39.130 2.79 4.69 44.12 1.40
1803 3911 5.552178 ACGAAAGCTCTTCCAGAGTATTTT 58.448 37.500 2.79 2.32 44.12 1.82
1804 3912 5.998363 ACGAAAGCTCTTCCAGAGTATTTTT 59.002 36.000 2.79 0.25 44.12 1.94
1827 3935 1.892209 ACTCCCACCTAAAACTTGCG 58.108 50.000 0.00 0.00 0.00 4.85
1852 3960 9.507280 CGCAGATCTAAAACATCATTTATTTGT 57.493 29.630 0.00 0.00 0.00 2.83
1902 4010 2.536365 GGAGATGTCAATACGCGTTGA 58.464 47.619 20.78 14.24 35.84 3.18
1980 4089 2.286831 CGTCTCATGCATGCAAGGATTC 60.287 50.000 26.68 17.37 0.00 2.52
1986 4095 6.097129 TCTCATGCATGCAAGGATTCATTTAA 59.903 34.615 26.68 0.00 0.00 1.52
1992 4101 3.378112 TGCAAGGATTCATTTAAGCGGAG 59.622 43.478 0.00 0.00 0.00 4.63
2183 5313 1.683917 GGGTACGATGAGCATCTCAGT 59.316 52.381 8.66 2.63 44.08 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.239148 GCATAAAATCCTTCCCTTTCCTGATC 60.239 42.308 0.00 0.00 0.00 2.92
1 2 5.600069 GCATAAAATCCTTCCCTTTCCTGAT 59.400 40.000 0.00 0.00 0.00 2.90
2 3 4.956075 GCATAAAATCCTTCCCTTTCCTGA 59.044 41.667 0.00 0.00 0.00 3.86
3 4 4.711355 TGCATAAAATCCTTCCCTTTCCTG 59.289 41.667 0.00 0.00 0.00 3.86
4 5 4.711846 GTGCATAAAATCCTTCCCTTTCCT 59.288 41.667 0.00 0.00 0.00 3.36
5 6 4.141937 GGTGCATAAAATCCTTCCCTTTCC 60.142 45.833 0.00 0.00 0.00 3.13
6 7 4.711846 AGGTGCATAAAATCCTTCCCTTTC 59.288 41.667 0.00 0.00 0.00 2.62
7 8 4.687976 AGGTGCATAAAATCCTTCCCTTT 58.312 39.130 0.00 0.00 0.00 3.11
11 12 3.631250 TGGAGGTGCATAAAATCCTTCC 58.369 45.455 0.00 0.00 0.00 3.46
23 24 0.687354 GAAGAGGAGTTGGAGGTGCA 59.313 55.000 0.00 0.00 0.00 4.57
25 26 2.104792 TGTTGAAGAGGAGTTGGAGGTG 59.895 50.000 0.00 0.00 0.00 4.00
96 97 1.071385 GATGATCGCCTTGGGTCTCAT 59.929 52.381 0.00 0.00 0.00 2.90
111 112 7.211573 TGAGTGCAAATTGTTCTTTTGATGAT 58.788 30.769 0.00 0.00 36.40 2.45
133 134 6.618287 TTTCCTACTTTGTGTGTCATTGAG 57.382 37.500 0.00 0.00 0.00 3.02
139 140 6.037830 TGCTAACTTTTCCTACTTTGTGTGTC 59.962 38.462 0.00 0.00 0.00 3.67
198 199 6.157994 TGGTTAGCCCTTAGATGTGTCTTAAT 59.842 38.462 0.00 0.00 35.87 1.40
202 203 3.450904 TGGTTAGCCCTTAGATGTGTCT 58.549 45.455 0.00 0.00 38.52 3.41
205 206 4.487714 TTCTGGTTAGCCCTTAGATGTG 57.512 45.455 0.00 0.00 0.00 3.21
206 207 4.288626 TGTTTCTGGTTAGCCCTTAGATGT 59.711 41.667 0.00 0.00 0.00 3.06
207 208 4.636206 GTGTTTCTGGTTAGCCCTTAGATG 59.364 45.833 0.00 0.00 0.00 2.90
208 209 4.536489 AGTGTTTCTGGTTAGCCCTTAGAT 59.464 41.667 0.00 0.00 0.00 1.98
209 210 3.908103 AGTGTTTCTGGTTAGCCCTTAGA 59.092 43.478 0.00 0.00 0.00 2.10
210 211 4.254492 GAGTGTTTCTGGTTAGCCCTTAG 58.746 47.826 0.00 0.00 0.00 2.18
211 212 3.649023 TGAGTGTTTCTGGTTAGCCCTTA 59.351 43.478 0.00 0.00 0.00 2.69
217 220 3.733337 AGCTGTGAGTGTTTCTGGTTAG 58.267 45.455 0.00 0.00 0.00 2.34
221 224 3.006323 ACTCTAGCTGTGAGTGTTTCTGG 59.994 47.826 19.10 0.00 42.46 3.86
232 235 1.555075 TGGGGCTAAACTCTAGCTGTG 59.445 52.381 0.00 0.00 40.25 3.66
249 252 9.953697 GAGCTCGTTCTACTTATATATATTGGG 57.046 37.037 0.00 0.00 0.00 4.12
276 279 7.705325 CGGTAAAAGCTAGCTAATGAAGTCTTA 59.295 37.037 19.70 2.50 0.00 2.10
286 289 3.514645 CGTTCCGGTAAAAGCTAGCTAA 58.485 45.455 19.70 2.59 0.00 3.09
287 290 2.159198 CCGTTCCGGTAAAAGCTAGCTA 60.159 50.000 19.70 0.00 42.73 3.32
288 291 1.405121 CCGTTCCGGTAAAAGCTAGCT 60.405 52.381 12.68 12.68 42.73 3.32
293 301 1.399440 GATTCCCGTTCCGGTAAAAGC 59.601 52.381 0.00 0.00 46.80 3.51
294 302 2.011947 GGATTCCCGTTCCGGTAAAAG 58.988 52.381 0.00 0.00 46.80 2.27
295 303 1.350351 TGGATTCCCGTTCCGGTAAAA 59.650 47.619 0.00 0.00 46.80 1.52
299 307 1.916777 ACTGGATTCCCGTTCCGGT 60.917 57.895 0.00 0.00 46.80 5.28
308 316 3.054361 TCCTTAGAGCCAAACTGGATTCC 60.054 47.826 0.00 0.00 35.51 3.01
316 324 2.096013 GCGTTCATCCTTAGAGCCAAAC 59.904 50.000 0.00 0.00 0.00 2.93
329 337 5.036737 CAGAATACATTTTGGGCGTTCATC 58.963 41.667 0.00 0.00 0.00 2.92
333 613 2.560542 TGCAGAATACATTTTGGGCGTT 59.439 40.909 0.00 0.00 0.00 4.84
334 614 2.164219 CTGCAGAATACATTTTGGGCGT 59.836 45.455 8.42 0.00 0.00 5.68
350 630 8.037382 TCTTCAATTTTCTTAGACATCTGCAG 57.963 34.615 7.63 7.63 0.00 4.41
370 650 8.556194 GTGTGACAGTTAACACATATTTCTTCA 58.444 33.333 8.61 0.00 46.20 3.02
371 651 7.740346 CGTGTGACAGTTAACACATATTTCTTC 59.260 37.037 16.56 0.00 45.61 2.87
374 654 7.112528 TCGTGTGACAGTTAACACATATTTC 57.887 36.000 16.56 0.00 45.61 2.17
378 658 6.019398 CAGTTTCGTGTGACAGTTAACACATA 60.019 38.462 16.56 1.08 45.61 2.29
379 659 4.873827 AGTTTCGTGTGACAGTTAACACAT 59.126 37.500 16.56 0.00 45.61 3.21
386 666 2.024176 AGCAGTTTCGTGTGACAGTT 57.976 45.000 0.00 0.00 0.00 3.16
388 668 1.792949 GGTAGCAGTTTCGTGTGACAG 59.207 52.381 0.00 0.00 0.00 3.51
397 677 9.406828 CCTTAAAAATTTGTAGGTAGCAGTTTC 57.593 33.333 0.00 0.00 0.00 2.78
398 678 8.920174 ACCTTAAAAATTTGTAGGTAGCAGTTT 58.080 29.630 14.26 0.00 35.85 2.66
399 679 8.357402 CACCTTAAAAATTTGTAGGTAGCAGTT 58.643 33.333 15.05 0.00 35.85 3.16
401 681 8.106247 TCACCTTAAAAATTTGTAGGTAGCAG 57.894 34.615 15.05 6.92 35.85 4.24
424 704 6.872920 ACTGGTCAAAATGTTTAAGCTTTCA 58.127 32.000 3.20 2.55 0.00 2.69
425 705 8.865590 TTACTGGTCAAAATGTTTAAGCTTTC 57.134 30.769 3.20 0.00 0.00 2.62
461 741 9.522804 GACCAAAATTAAGTGTAACATTTGTCA 57.477 29.630 0.00 0.00 41.43 3.58
462 742 9.744468 AGACCAAAATTAAGTGTAACATTTGTC 57.256 29.630 0.00 0.00 41.43 3.18
484 780 5.574443 GCAATGCTTTGTCTATGAAAAGACC 59.426 40.000 13.29 0.00 44.40 3.85
487 783 7.646922 GGATAGCAATGCTTTGTCTATGAAAAG 59.353 37.037 14.85 0.00 40.44 2.27
495 793 2.292267 CCGGATAGCAATGCTTTGTCT 58.708 47.619 14.85 12.43 40.44 3.41
496 794 2.017049 ACCGGATAGCAATGCTTTGTC 58.983 47.619 14.85 9.59 40.44 3.18
497 795 2.128771 ACCGGATAGCAATGCTTTGT 57.871 45.000 14.85 0.00 40.44 2.83
498 796 3.508744 AAACCGGATAGCAATGCTTTG 57.491 42.857 14.85 7.93 40.44 2.77
499 797 3.509575 TGAAAACCGGATAGCAATGCTTT 59.490 39.130 14.85 5.20 40.44 3.51
500 798 3.088532 TGAAAACCGGATAGCAATGCTT 58.911 40.909 14.85 0.76 40.44 3.91
501 799 2.423538 GTGAAAACCGGATAGCAATGCT 59.576 45.455 13.92 13.92 43.41 3.79
502 800 2.163412 TGTGAAAACCGGATAGCAATGC 59.837 45.455 9.46 0.00 0.00 3.56
503 801 4.637483 ATGTGAAAACCGGATAGCAATG 57.363 40.909 9.46 0.00 0.00 2.82
504 802 6.767524 TTTATGTGAAAACCGGATAGCAAT 57.232 33.333 9.46 0.00 0.00 3.56
505 803 6.576662 TTTTATGTGAAAACCGGATAGCAA 57.423 33.333 9.46 0.00 0.00 3.91
506 804 6.207810 AGTTTTTATGTGAAAACCGGATAGCA 59.792 34.615 9.46 0.00 45.91 3.49
507 805 6.526674 CAGTTTTTATGTGAAAACCGGATAGC 59.473 38.462 9.46 0.00 45.91 2.97
508 806 7.590279 ACAGTTTTTATGTGAAAACCGGATAG 58.410 34.615 9.46 0.00 45.91 2.08
509 807 7.513371 ACAGTTTTTATGTGAAAACCGGATA 57.487 32.000 9.46 0.00 45.91 2.59
510 808 6.399639 ACAGTTTTTATGTGAAAACCGGAT 57.600 33.333 9.46 0.00 45.91 4.18
511 809 5.838531 ACAGTTTTTATGTGAAAACCGGA 57.161 34.783 9.46 0.00 45.91 5.14
521 819 5.852282 AAGGTGCTTCACAGTTTTTATGT 57.148 34.783 0.00 0.00 35.86 2.29
522 820 8.816640 AATAAAGGTGCTTCACAGTTTTTATG 57.183 30.769 0.00 0.00 35.86 1.90
523 821 9.908152 GTAATAAAGGTGCTTCACAGTTTTTAT 57.092 29.630 0.00 2.28 35.86 1.40
524 822 8.904834 TGTAATAAAGGTGCTTCACAGTTTTTA 58.095 29.630 0.00 0.35 35.86 1.52
525 823 7.704899 GTGTAATAAAGGTGCTTCACAGTTTTT 59.295 33.333 0.00 0.00 35.86 1.94
526 824 7.068226 AGTGTAATAAAGGTGCTTCACAGTTTT 59.932 33.333 0.00 0.47 35.86 2.43
527 825 6.546034 AGTGTAATAAAGGTGCTTCACAGTTT 59.454 34.615 0.00 1.60 35.86 2.66
528 826 6.062095 AGTGTAATAAAGGTGCTTCACAGTT 58.938 36.000 0.00 0.00 35.86 3.16
529 827 5.621193 AGTGTAATAAAGGTGCTTCACAGT 58.379 37.500 0.00 0.00 35.86 3.55
530 828 7.172532 TGTTAGTGTAATAAAGGTGCTTCACAG 59.827 37.037 0.00 0.00 35.86 3.66
531 829 6.993308 TGTTAGTGTAATAAAGGTGCTTCACA 59.007 34.615 0.00 0.00 35.86 3.58
532 830 7.429636 TGTTAGTGTAATAAAGGTGCTTCAC 57.570 36.000 0.00 0.00 0.00 3.18
533 831 9.727859 TTATGTTAGTGTAATAAAGGTGCTTCA 57.272 29.630 0.00 0.00 0.00 3.02
536 834 9.509956 TGTTTATGTTAGTGTAATAAAGGTGCT 57.490 29.630 0.00 0.00 0.00 4.40
587 885 9.902684 TGGATGGACGGTAAATTTAGTAAATAA 57.097 29.630 8.54 0.00 0.00 1.40
588 886 9.902684 TTGGATGGACGGTAAATTTAGTAAATA 57.097 29.630 8.54 0.00 0.00 1.40
589 887 8.810990 TTGGATGGACGGTAAATTTAGTAAAT 57.189 30.769 2.10 2.10 0.00 1.40
590 888 8.632906 TTTGGATGGACGGTAAATTTAGTAAA 57.367 30.769 0.00 0.00 0.00 2.01
591 889 7.148205 GCTTTGGATGGACGGTAAATTTAGTAA 60.148 37.037 0.00 0.00 0.00 2.24
592 890 6.316890 GCTTTGGATGGACGGTAAATTTAGTA 59.683 38.462 0.00 0.00 0.00 1.82
593 891 5.124936 GCTTTGGATGGACGGTAAATTTAGT 59.875 40.000 0.00 0.00 0.00 2.24
594 892 5.124776 TGCTTTGGATGGACGGTAAATTTAG 59.875 40.000 0.00 0.00 0.00 1.85
595 893 5.010933 TGCTTTGGATGGACGGTAAATTTA 58.989 37.500 0.00 0.00 0.00 1.40
596 894 3.829601 TGCTTTGGATGGACGGTAAATTT 59.170 39.130 0.00 0.00 0.00 1.82
597 895 3.426615 TGCTTTGGATGGACGGTAAATT 58.573 40.909 0.00 0.00 0.00 1.82
598 896 3.080300 TGCTTTGGATGGACGGTAAAT 57.920 42.857 0.00 0.00 0.00 1.40
599 897 2.570415 TGCTTTGGATGGACGGTAAA 57.430 45.000 0.00 0.00 0.00 2.01
600 898 2.290641 ACATGCTTTGGATGGACGGTAA 60.291 45.455 0.00 0.00 0.00 2.85
601 899 1.280710 ACATGCTTTGGATGGACGGTA 59.719 47.619 0.00 0.00 0.00 4.02
602 900 0.038166 ACATGCTTTGGATGGACGGT 59.962 50.000 0.00 0.00 0.00 4.83
603 901 0.452987 CACATGCTTTGGATGGACGG 59.547 55.000 0.00 0.00 0.00 4.79
604 902 1.452110 TCACATGCTTTGGATGGACG 58.548 50.000 0.00 0.00 0.00 4.79
605 903 2.360165 GGATCACATGCTTTGGATGGAC 59.640 50.000 0.00 0.00 0.00 4.02
606 904 2.025131 TGGATCACATGCTTTGGATGGA 60.025 45.455 0.00 0.00 0.00 3.41
607 905 2.361119 CTGGATCACATGCTTTGGATGG 59.639 50.000 0.00 0.00 0.00 3.51
608 906 2.223735 GCTGGATCACATGCTTTGGATG 60.224 50.000 0.00 0.00 0.00 3.51
609 907 2.029623 GCTGGATCACATGCTTTGGAT 58.970 47.619 0.00 0.00 0.00 3.41
610 908 1.466856 GCTGGATCACATGCTTTGGA 58.533 50.000 0.00 0.00 0.00 3.53
611 909 0.458669 GGCTGGATCACATGCTTTGG 59.541 55.000 0.00 0.00 0.00 3.28
612 910 0.458669 GGGCTGGATCACATGCTTTG 59.541 55.000 0.00 0.00 0.00 2.77
613 911 0.685458 GGGGCTGGATCACATGCTTT 60.685 55.000 0.00 0.00 0.00 3.51
614 912 1.076485 GGGGCTGGATCACATGCTT 60.076 57.895 0.00 0.00 0.00 3.91
615 913 1.652187 ATGGGGCTGGATCACATGCT 61.652 55.000 0.00 0.00 0.00 3.79
616 914 0.757935 AATGGGGCTGGATCACATGC 60.758 55.000 0.00 0.00 0.00 4.06
617 915 1.684983 GAAATGGGGCTGGATCACATG 59.315 52.381 0.00 0.00 0.00 3.21
618 916 1.288633 TGAAATGGGGCTGGATCACAT 59.711 47.619 0.00 0.00 0.00 3.21
619 917 0.703488 TGAAATGGGGCTGGATCACA 59.297 50.000 0.00 0.00 0.00 3.58
620 918 1.106285 GTGAAATGGGGCTGGATCAC 58.894 55.000 0.00 0.00 0.00 3.06
621 919 0.033208 GGTGAAATGGGGCTGGATCA 60.033 55.000 0.00 0.00 0.00 2.92
622 920 0.259938 AGGTGAAATGGGGCTGGATC 59.740 55.000 0.00 0.00 0.00 3.36
623 921 1.215423 GTAGGTGAAATGGGGCTGGAT 59.785 52.381 0.00 0.00 0.00 3.41
624 922 0.623723 GTAGGTGAAATGGGGCTGGA 59.376 55.000 0.00 0.00 0.00 3.86
625 923 0.748005 CGTAGGTGAAATGGGGCTGG 60.748 60.000 0.00 0.00 0.00 4.85
626 924 0.251916 TCGTAGGTGAAATGGGGCTG 59.748 55.000 0.00 0.00 0.00 4.85
627 925 1.213296 ATCGTAGGTGAAATGGGGCT 58.787 50.000 0.00 0.00 0.00 5.19
628 926 1.947456 GAATCGTAGGTGAAATGGGGC 59.053 52.381 0.00 0.00 0.00 5.80
629 927 3.134804 AGAGAATCGTAGGTGAAATGGGG 59.865 47.826 0.00 0.00 42.67 4.96
630 928 4.100189 AGAGAGAATCGTAGGTGAAATGGG 59.900 45.833 0.00 0.00 42.67 4.00
631 929 5.046529 CAGAGAGAATCGTAGGTGAAATGG 58.953 45.833 0.00 0.00 42.67 3.16
632 930 5.746245 GTCAGAGAGAATCGTAGGTGAAATG 59.254 44.000 0.00 0.00 42.67 2.32
633 931 5.654650 AGTCAGAGAGAATCGTAGGTGAAAT 59.345 40.000 0.00 0.00 42.67 2.17
634 932 5.010933 AGTCAGAGAGAATCGTAGGTGAAA 58.989 41.667 0.00 0.00 42.67 2.69
635 933 4.590918 AGTCAGAGAGAATCGTAGGTGAA 58.409 43.478 0.00 0.00 42.67 3.18
636 934 4.193090 GAGTCAGAGAGAATCGTAGGTGA 58.807 47.826 0.00 0.00 42.67 4.02
637 935 3.942115 TGAGTCAGAGAGAATCGTAGGTG 59.058 47.826 0.00 0.00 44.05 4.00
638 936 4.223556 TGAGTCAGAGAGAATCGTAGGT 57.776 45.455 0.00 0.00 44.05 3.08
639 937 4.201970 GGTTGAGTCAGAGAGAATCGTAGG 60.202 50.000 0.00 0.00 44.05 3.18
640 938 4.201970 GGGTTGAGTCAGAGAGAATCGTAG 60.202 50.000 0.00 0.00 44.05 3.51
641 939 3.695060 GGGTTGAGTCAGAGAGAATCGTA 59.305 47.826 0.00 0.00 44.05 3.43
642 940 2.494073 GGGTTGAGTCAGAGAGAATCGT 59.506 50.000 0.00 0.00 44.05 3.73
643 941 2.478709 CGGGTTGAGTCAGAGAGAATCG 60.479 54.545 0.00 0.00 44.05 3.34
644 942 2.159170 CCGGGTTGAGTCAGAGAGAATC 60.159 54.545 0.00 0.00 41.58 2.52
645 943 1.827969 CCGGGTTGAGTCAGAGAGAAT 59.172 52.381 0.00 0.00 0.00 2.40
646 944 1.203013 TCCGGGTTGAGTCAGAGAGAA 60.203 52.381 0.00 0.00 0.00 2.87
647 945 0.404426 TCCGGGTTGAGTCAGAGAGA 59.596 55.000 0.00 0.00 0.00 3.10
648 946 0.528470 GTCCGGGTTGAGTCAGAGAG 59.472 60.000 0.00 0.00 0.00 3.20
649 947 0.178973 TGTCCGGGTTGAGTCAGAGA 60.179 55.000 0.00 0.00 0.00 3.10
650 948 0.244994 CTGTCCGGGTTGAGTCAGAG 59.755 60.000 0.00 0.00 0.00 3.35
651 949 1.816863 GCTGTCCGGGTTGAGTCAGA 61.817 60.000 0.00 0.00 0.00 3.27
723 1035 1.886313 TAGCTCGCGTCGACTAGGG 60.886 63.158 14.70 8.30 0.00 3.53
751 1063 2.202878 GGCGTGCGAGGATGCTTA 60.203 61.111 8.60 0.00 35.36 3.09
837 1150 0.950555 GATCACGTGACCTGCTGCAA 60.951 55.000 22.71 0.00 0.00 4.08
846 1159 2.539953 GGAGTCGATCTGATCACGTGAC 60.540 54.545 22.71 15.11 0.00 3.67
878 1191 5.431765 GCCATGGATTTATACGAGATGGAT 58.568 41.667 18.40 0.00 32.20 3.41
879 1192 4.323485 GGCCATGGATTTATACGAGATGGA 60.323 45.833 18.40 0.00 32.20 3.41
881 1194 3.618594 CGGCCATGGATTTATACGAGATG 59.381 47.826 18.40 0.00 0.00 2.90
883 1196 2.894765 TCGGCCATGGATTTATACGAGA 59.105 45.455 18.40 0.00 0.00 4.04
937 1250 2.747446 TCGATCTGATGACAACGAGTGA 59.253 45.455 0.00 0.00 0.00 3.41
938 1251 3.104470 CTCGATCTGATGACAACGAGTG 58.896 50.000 14.16 0.00 38.29 3.51
975 1295 2.456119 CGTGCGGATTGCTCTGGTC 61.456 63.158 0.00 0.00 46.63 4.02
999 1327 3.798954 CTCCTTCGCCGCCTCCATC 62.799 68.421 0.00 0.00 0.00 3.51
1239 1567 1.690283 CGTGCAGATTCAGGTGCTCG 61.690 60.000 4.65 4.65 46.28 5.03
1331 1659 2.677003 CGGTTGATGGTGTCGGTGC 61.677 63.158 0.00 0.00 0.00 5.01
1372 1700 0.543749 AAGACAGCCTAGCCATGACC 59.456 55.000 0.00 0.00 0.00 4.02
1373 1701 1.661341 CAAGACAGCCTAGCCATGAC 58.339 55.000 0.00 0.00 0.00 3.06
1374 1702 0.107508 GCAAGACAGCCTAGCCATGA 60.108 55.000 0.00 0.00 0.00 3.07
1375 1703 0.107312 AGCAAGACAGCCTAGCCATG 60.107 55.000 0.00 0.00 34.23 3.66
1376 1704 1.415659 CTAGCAAGACAGCCTAGCCAT 59.584 52.381 0.00 0.00 34.23 4.40
1377 1705 0.826715 CTAGCAAGACAGCCTAGCCA 59.173 55.000 0.00 0.00 34.23 4.75
1378 1706 0.531753 GCTAGCAAGACAGCCTAGCC 60.532 60.000 10.63 0.00 36.31 3.93
1400 1728 2.481449 GCACTACGTGGATAACCTCCTG 60.481 54.545 5.70 0.00 45.21 3.86
1429 1757 2.375146 ACTTTATTCATTCCCCCACGC 58.625 47.619 0.00 0.00 0.00 5.34
1430 1758 3.130340 CCAACTTTATTCATTCCCCCACG 59.870 47.826 0.00 0.00 0.00 4.94
1431 1759 4.093743 ACCAACTTTATTCATTCCCCCAC 58.906 43.478 0.00 0.00 0.00 4.61
1432 1760 4.412060 ACCAACTTTATTCATTCCCCCA 57.588 40.909 0.00 0.00 0.00 4.96
1433 1761 6.382859 ACATTACCAACTTTATTCATTCCCCC 59.617 38.462 0.00 0.00 0.00 5.40
1434 1762 7.418337 ACATTACCAACTTTATTCATTCCCC 57.582 36.000 0.00 0.00 0.00 4.81
1440 1768 9.562583 GCGATTTTACATTACCAACTTTATTCA 57.437 29.630 0.00 0.00 0.00 2.57
1441 1769 9.783256 AGCGATTTTACATTACCAACTTTATTC 57.217 29.630 0.00 0.00 0.00 1.75
1442 1770 9.567848 CAGCGATTTTACATTACCAACTTTATT 57.432 29.630 0.00 0.00 0.00 1.40
1443 1771 8.188139 CCAGCGATTTTACATTACCAACTTTAT 58.812 33.333 0.00 0.00 0.00 1.40
1444 1772 7.531716 CCAGCGATTTTACATTACCAACTTTA 58.468 34.615 0.00 0.00 0.00 1.85
1445 1773 6.386654 CCAGCGATTTTACATTACCAACTTT 58.613 36.000 0.00 0.00 0.00 2.66
1446 1774 5.621329 GCCAGCGATTTTACATTACCAACTT 60.621 40.000 0.00 0.00 0.00 2.66
1447 1775 4.142469 GCCAGCGATTTTACATTACCAACT 60.142 41.667 0.00 0.00 0.00 3.16
1448 1776 4.102649 GCCAGCGATTTTACATTACCAAC 58.897 43.478 0.00 0.00 0.00 3.77
1449 1777 3.759086 TGCCAGCGATTTTACATTACCAA 59.241 39.130 0.00 0.00 0.00 3.67
1450 1778 3.348119 TGCCAGCGATTTTACATTACCA 58.652 40.909 0.00 0.00 0.00 3.25
1451 1779 4.364415 TTGCCAGCGATTTTACATTACC 57.636 40.909 0.00 0.00 0.00 2.85
1452 1780 4.265320 GCTTTGCCAGCGATTTTACATTAC 59.735 41.667 0.00 0.00 39.29 1.89
1453 1781 4.420168 GCTTTGCCAGCGATTTTACATTA 58.580 39.130 0.00 0.00 39.29 1.90
1454 1782 3.253230 GCTTTGCCAGCGATTTTACATT 58.747 40.909 0.00 0.00 39.29 2.71
1455 1783 2.879826 GCTTTGCCAGCGATTTTACAT 58.120 42.857 0.00 0.00 39.29 2.29
1456 1784 2.346099 GCTTTGCCAGCGATTTTACA 57.654 45.000 0.00 0.00 39.29 2.41
1466 1794 1.131883 GCTGTAGACATGCTTTGCCAG 59.868 52.381 0.00 0.00 0.00 4.85
1467 1795 1.167851 GCTGTAGACATGCTTTGCCA 58.832 50.000 0.00 0.00 0.00 4.92
1468 1796 1.167851 TGCTGTAGACATGCTTTGCC 58.832 50.000 0.00 0.00 0.00 4.52
1469 1797 4.621068 TTATGCTGTAGACATGCTTTGC 57.379 40.909 0.00 0.00 0.00 3.68
1470 1798 6.127810 ACATTATGCTGTAGACATGCTTTG 57.872 37.500 0.00 0.00 0.00 2.77
1471 1799 9.559732 TTATACATTATGCTGTAGACATGCTTT 57.440 29.630 0.00 0.00 35.21 3.51
1472 1800 9.730705 ATTATACATTATGCTGTAGACATGCTT 57.269 29.630 0.00 3.24 35.21 3.91
1513 1841 6.462067 CCTCAAAGCTCTTGGAAGATGTTTTT 60.462 38.462 8.23 0.00 33.93 1.94
1514 1842 5.010415 CCTCAAAGCTCTTGGAAGATGTTTT 59.990 40.000 8.23 0.00 33.93 2.43
1515 1843 4.522022 CCTCAAAGCTCTTGGAAGATGTTT 59.478 41.667 8.23 0.00 33.93 2.83
1516 1844 4.077822 CCTCAAAGCTCTTGGAAGATGTT 58.922 43.478 8.23 0.00 33.93 2.71
1517 1845 3.073650 ACCTCAAAGCTCTTGGAAGATGT 59.926 43.478 8.23 0.00 33.93 3.06
1518 1846 3.683802 ACCTCAAAGCTCTTGGAAGATG 58.316 45.455 8.23 0.00 33.93 2.90
1519 1847 4.379302 AACCTCAAAGCTCTTGGAAGAT 57.621 40.909 8.23 0.00 33.93 2.40
1520 1848 3.864789 AACCTCAAAGCTCTTGGAAGA 57.135 42.857 8.23 0.00 0.00 2.87
1521 1849 4.637977 GGATAACCTCAAAGCTCTTGGAAG 59.362 45.833 8.23 0.00 0.00 3.46
1522 1850 4.042809 TGGATAACCTCAAAGCTCTTGGAA 59.957 41.667 8.23 0.00 37.04 3.53
1523 1851 3.587061 TGGATAACCTCAAAGCTCTTGGA 59.413 43.478 8.23 0.00 37.04 3.53
1524 1852 3.691609 GTGGATAACCTCAAAGCTCTTGG 59.308 47.826 8.23 2.18 37.04 3.61
1525 1853 3.372206 CGTGGATAACCTCAAAGCTCTTG 59.628 47.826 0.00 0.00 37.04 3.02
1526 1854 3.008049 ACGTGGATAACCTCAAAGCTCTT 59.992 43.478 0.00 0.00 37.04 2.85
1527 1855 2.567615 ACGTGGATAACCTCAAAGCTCT 59.432 45.455 0.00 0.00 37.04 4.09
1528 1856 2.973945 ACGTGGATAACCTCAAAGCTC 58.026 47.619 0.00 0.00 37.04 4.09
1529 1857 3.514309 ACTACGTGGATAACCTCAAAGCT 59.486 43.478 5.70 0.00 37.04 3.74
1530 1858 3.617263 CACTACGTGGATAACCTCAAAGC 59.383 47.826 5.70 0.00 37.04 3.51
1531 1859 3.617263 GCACTACGTGGATAACCTCAAAG 59.383 47.826 5.70 0.00 37.04 2.77
1532 1860 3.259876 AGCACTACGTGGATAACCTCAAA 59.740 43.478 5.70 0.00 37.04 2.69
1533 1861 2.829720 AGCACTACGTGGATAACCTCAA 59.170 45.455 5.70 0.00 37.04 3.02
1534 1862 2.426024 GAGCACTACGTGGATAACCTCA 59.574 50.000 5.70 0.00 37.04 3.86
1535 1863 2.426024 TGAGCACTACGTGGATAACCTC 59.574 50.000 5.70 4.32 37.04 3.85
1536 1864 2.427453 CTGAGCACTACGTGGATAACCT 59.573 50.000 5.70 0.00 37.04 3.50
1537 1865 2.165845 ACTGAGCACTACGTGGATAACC 59.834 50.000 5.70 0.00 33.64 2.85
1538 1866 3.179830 CACTGAGCACTACGTGGATAAC 58.820 50.000 5.70 0.00 33.64 1.89
1539 1867 2.416836 GCACTGAGCACTACGTGGATAA 60.417 50.000 5.70 0.00 44.79 1.75
1540 1868 1.134367 GCACTGAGCACTACGTGGATA 59.866 52.381 5.70 0.00 44.79 2.59
1541 1869 0.108615 GCACTGAGCACTACGTGGAT 60.109 55.000 5.70 0.00 44.79 3.41
1542 1870 1.289066 GCACTGAGCACTACGTGGA 59.711 57.895 5.70 0.00 44.79 4.02
1543 1871 2.088763 CGCACTGAGCACTACGTGG 61.089 63.158 0.00 0.00 46.13 4.94
1544 1872 2.720758 GCGCACTGAGCACTACGTG 61.721 63.158 0.30 0.00 46.13 4.49
1545 1873 2.430921 GCGCACTGAGCACTACGT 60.431 61.111 0.30 0.00 46.13 3.57
1546 1874 3.536394 CGCGCACTGAGCACTACG 61.536 66.667 8.75 0.00 46.13 3.51
1547 1875 2.430921 ACGCGCACTGAGCACTAC 60.431 61.111 5.73 0.00 46.13 2.73
1548 1876 2.430751 CACGCGCACTGAGCACTA 60.431 61.111 5.73 0.00 46.13 2.74
1556 1884 3.860930 ATTTTCCCCCACGCGCACT 62.861 57.895 5.73 0.00 0.00 4.40
1557 1885 3.370231 ATTTTCCCCCACGCGCAC 61.370 61.111 5.73 0.00 0.00 5.34
1558 1886 3.369400 CATTTTCCCCCACGCGCA 61.369 61.111 5.73 0.00 0.00 6.09
1583 1911 3.759086 TGCCAGCGATTTTACATTACCAA 59.241 39.130 0.00 0.00 0.00 3.67
1764 3872 0.958876 TCGTTAGTCTCGCCTCTGCA 60.959 55.000 0.00 0.00 37.32 4.41
1765 3873 0.170561 TTCGTTAGTCTCGCCTCTGC 59.829 55.000 0.00 0.00 0.00 4.26
1773 3881 4.082679 TCTGGAAGAGCTTTCGTTAGTCTC 60.083 45.833 0.00 0.00 38.67 3.36
1801 3909 7.308710 CGCAAGTTTTAGGTGGGAGTATAAAAA 60.309 37.037 0.00 0.00 31.10 1.94
1802 3910 6.149807 CGCAAGTTTTAGGTGGGAGTATAAAA 59.850 38.462 0.00 0.00 0.00 1.52
1803 3911 5.644636 CGCAAGTTTTAGGTGGGAGTATAAA 59.355 40.000 0.00 0.00 0.00 1.40
1804 3912 5.180271 CGCAAGTTTTAGGTGGGAGTATAA 58.820 41.667 0.00 0.00 0.00 0.98
1805 3913 4.761975 CGCAAGTTTTAGGTGGGAGTATA 58.238 43.478 0.00 0.00 0.00 1.47
1806 3914 3.606687 CGCAAGTTTTAGGTGGGAGTAT 58.393 45.455 0.00 0.00 0.00 2.12
1807 3915 2.872842 GCGCAAGTTTTAGGTGGGAGTA 60.873 50.000 0.30 0.00 41.68 2.59
1808 3916 1.892209 CGCAAGTTTTAGGTGGGAGT 58.108 50.000 0.00 0.00 0.00 3.85
1809 3917 0.521735 GCGCAAGTTTTAGGTGGGAG 59.478 55.000 0.30 0.00 41.68 4.30
1810 3918 0.179015 TGCGCAAGTTTTAGGTGGGA 60.179 50.000 8.16 0.00 41.68 4.37
1811 3919 0.240945 CTGCGCAAGTTTTAGGTGGG 59.759 55.000 13.05 0.00 41.68 4.61
1812 3920 1.234821 TCTGCGCAAGTTTTAGGTGG 58.765 50.000 13.05 0.00 41.68 4.61
1813 3921 2.744202 AGATCTGCGCAAGTTTTAGGTG 59.256 45.455 13.05 0.00 41.68 4.00
1814 3922 3.059352 AGATCTGCGCAAGTTTTAGGT 57.941 42.857 13.05 0.00 41.68 3.08
1815 3923 5.545658 TTTAGATCTGCGCAAGTTTTAGG 57.454 39.130 13.05 0.00 41.68 2.69
1852 3960 1.271108 TGCCGACTTAATTGGTCTGCA 60.271 47.619 19.85 19.85 46.11 4.41
1853 3961 1.130561 GTGCCGACTTAATTGGTCTGC 59.869 52.381 16.61 16.61 41.81 4.26
1980 4089 3.084070 GGAATTGCCTCCGCTTAAATG 57.916 47.619 0.00 0.00 35.36 2.32
1992 4101 2.559231 TGGAACTTTAACCGGAATTGCC 59.441 45.455 9.46 0.00 0.00 4.52
2183 5313 6.707440 TTTCTCCATTGCACTTTTCTTGTA 57.293 33.333 0.00 0.00 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.