>input_sequence_82547
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-----------------------------------------------ATGGAGGCGGCGAAGGAGAGGCGGGAGCAGCAG
GAGCGGAAGGCCGCCGGCGCAGGCGAGGGAGCCGACTCGGTGCAGCTGCCGACGGAGACGAGCCCGTACGTGCAGTACAA
AAAGGACGACGGCCTGGAGGACTACAAGATGCGGGCCTACGGCGCGCAGGGCCACCTCCCCGTCTCCGACGTCCCCCATA
GCTCCGGCACCGACGCGCCCACCATCCCCGGCACCGCGCTCCCGACCGAGCACCTGAATCTGCACGGGCGCCAGCAGCCG
CAGCGGGGTGCCCAGGGAGGAGGCGCTGGCGTTCGCCGCACCGACGACGACGAGGCTGGCACCGACACCATCAACCGCCA
CGGCGTGCCGTAG-------------------------------------------------------------------
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>chr5D_1_TraesCS5D01G266700
GATCAGGAAAGGGAAGGATTTTATGCACCTCCAACTCCTCTTCAACATGCAGATGCACTCGCCGCGGAGGACTAAACCAA
GCTCTAAATACCAATTATGAGACCCAAGGCGATCATCAAAAGAACAATTTGCACTCAATGACACACAAAGTAGGAAAAGT
TAGCAATTTGAAGCTTAATTTCAAGAAACTTAGGCGGAATTAAGACACATCT--AAGGGCTAACCAGAAACACTCACAGC
TAGAGTTTAGCCCCAATATATATAAGTAGAACGAGCTCTAAGACTTCATTA-----GCTAGCTTTTACCGGAACGGGAAT
CCAGTTTGGCTCTAAGG---------------------------------------------------------------
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-------------------------------------------------ATGAACGCCCAAAATGTATTCTGCAGATGTC
TAAGAAAATTGAAGAAATATGTGTTAACTGTCACACGAAACTGCTACCTACAAATTTTTAAGGTGAAAGCTTAAACATTT
TGACCAGTAAAAAAGTTGAATG----------------ACAAATGTTACACTTAATTTTGGTCTT--TTCATAGACAAAG
CATTGCTATCCGGTTTTCACATAAAAACTGTGAAGCACCTTTATTACACTAACATAAACATCGGAAAAAACAGGATTTTT
AATTTTATTTACTAAATTTACCGTCCATCCAAAGCATGTGATCCAGCCCCATTTCACCTACGATTCTCTCTGACTCAACC
CGGAC--------------AGCGTCGTCGCCCTGGCGTGTGCGCCGTTTTCTCCGGCGCAGATCAATGTACCCGCCCTAG
TCGACGCGAGCTACGTGTCGCCTAAGCATCCTCGCACGCCACGCGTAGACGTAGCCGCACCCTCCGCTTGCCACGGCGCG
TCCTGCAATGGCT-AGGTGGCCTCGGGACTTGCAGCAGGTCACGTGATCAGATCGACTCCACCGTCCCATATCCATCTCG
TATAAATCCATGGCCGACCACGCCGTGTTGGATAGGGACACACACACTCTCACTCGTTG-------TCATCAGATCGAGC
ATCCAATCCAGAAAGACCAGAGCAATCCGCAC--------GTGAGCGATGGAGGCGGCGAAGGAGAGGCGGGAGCAGCAG
GAGCGGAAGGCCGCCGGCGCAGGCGAGGGAGCCGACTCGGTGCAGCTGCCGACGGAGACGAGCCCGTACGTGCAGTACAA
AAAGGACGACGGCCTGGAGGACTACAAGATGCGGGCCTACGGCGCGCAGGGCCACCTCCCCGTCTCCGACGTCCCCCATA
GCTCCGGCACCGACGCGCCCACCATCCCCGGCACCGCGCTCCCGACCGAGCACCTGAATCTGCACGGGCGCCAGCAGCCG
CAGCGGGGTGCCCAGGGAGGAGGCGCTGGCGTTCGCCGCACCGACGACGACGAGGCTGGCACCGACACCATCAACCGCCA
CGGCGTGCCGTAGTTCATGGGTCATGGCTAGGCTGTCTTGCTAGCTCCAGGAGGTTATCCACGTAGTGCTCAGTGCGCGT
GGGGGAATGAATAAAGTTGGTAATGTAAAATCGCTGGCAAAGCATGTCTACAGCATAATGTATAATAGTTTTTGTCCAAA
AAAAACATCTTCCAAGAGCTTTGAGGTTATCCACGTAGTGCTCAGTGCGCGTGGGGGAAAATGAATAAAGTT-GGTAATG
TAAAATCGCTGGCAAAGCATGTCTACAGCATAATGTACTAAT-----AGTTTTTGTCC----------------------
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--------------------------------------------------AAAAAAAACATCTTCCAAGAGCTTTGAGCT
TCCAACTTGCACTGGTTGTATGTCCTCGTTCGGGTCGC----GTGCTCCTAATGGGC------------------AATTG
ATTTGATCTACACTCATCGGCGCCTCTGATGTGCAGAGGCGAGACTAACGAAAGCTCTTCCAGAGTATTTTTTATACTCC
CACCTAAAACTTGCGCAGATCTAAAACATCATTTATTTGTGCAGACCAATTAAGTCGGCACGCCACCTCGGAGATGTCAA
TACGCGTTGATC-GTGCGAGGATAGATTCCATCGACCGTATTCGTCACGAATCTTGTCTCCTCTTCTCGTCTCATGCATG
CAAGGATTCATTTAAGCGGAGGCAATTCCGGTTAAAGTTCCACGCACCTTGGCTGCAGATAAAACGAACACCAAAATCCA
GCGAGGAAATATAAACTACTAACTAG------------------------------------------------------
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--------------------------------------------------------------------CCTGTCACAAAC
CAGAGAATCTACCTCGCAACTTCCAGGATCATCG------------ATCCTTGAGAAGCAGCAGCAAATAGTCATATATA
TATAT----GGGTACGATG---AGCATCTCAGTACAAGAAAAGTGCAATGGAGAAAGCACGCGCAGCCATCCTCTTCCTG
CTACTCCTCGTCGATTTCGCCGTAGCAGCACAAAACGCCACCGCCGGCGAAGCAGATGGATTCCACGTCGGGGTGATCCT
CGACCTGGGATCGCCGGTGGGCAAAGTGGCGCGGACCAGCGTTCTGCTGGCCGTC
>chr5A_9
--------AAGAGAAGGATTTTAGGAACCTCCAACTCCTCTTCGGCATGCAGATCCACTCGCCGCGGAGGACTAAACCAA
GCTCTAAATACCAATTGTCAGATCCAAGGCGGTGATCAGAAGAAAAATTTGCAGTCAATCACTCACAAAGTAGTAAAACT
TAGCAGCCTGAAGCTTAATTTCAAGAAACTTAGGAGGCGGATTTAAGATATAGCAAGGGTTACTCAAAAACACTGACATC
TAGAGTTTAGCACA-----ATATAAGTAGAACGAGTTCGAAGACTTCAGATCGTTGGCTAAGCTTTGCCGGAACGAAAAT
CCAATTTGGCTCTAGCTAAGGAGC--------------------------------------------------------
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-----------------------------------------ATATGCTCCTGCGCGCCCAAAATGAATTTTGTAAATGTC
TAAAAAAATA-----------TGTTCATGGTCACACATCAATGCTACCTATAAATTTTTA-GGCAAAAACCTAAGCATTT
TGATCCTAAAAAAATAAATTAAATGACAAATGTTACCCACAAAGGTTACACTTAATTTTTGTTTTATTTCAT--------
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---------------------------------------------------------------------CTGACTCAACC
GGTACAGCGTCGTCGCCCTAGCGTCGTCGCCCTGGCGTGTGCGCCGTTTTCTGCGGCGCAGATCAGTGTACCCGGCCTAG
TCGACGCGAGCTACGTGTCGCCCAAGCACCGTCGCACGCCACGCGTAGATGTAGCCGCACCCTCCGCTTGCCACCGCGTG
TCCTGCAATGGCTTAGGTGGCCTCGGGACCTGCAGCAGCTCACGTGATCAGATCGACTCCACCGTCCCATGCCTAGCTCG
TATAAATCCATGGGCGACCACGCCGTGTTGGATAGGGACACACACACTC--ACTCGCTG-------TCATCAGATCGAGC
ATCCAATCCAGAAAAACCAGAGCAATCCGCACGTGAGGCCGTGAGCAATGGAGGCGGCGAAGGAGAGGCGGGAGCAGCAG
GAGCGGAAGGCCGCCGGCGCCGGCGAGGGGGGCGACTCGGTGCAGCTGCCGACGGAGACGAGCCCGTACGTGCAGTACAA
TAAGGACGACGGCCTGGAGGACTACAAGATGCGTGCCTACGGCGCGCAGGGCCACCTCCCCGTCTCCGACGTCCCCCACG
GCTCCGGCACCGACGCGCCCACCATCCCTGGCACCGCGCTCCCGACGCAGCACCTGAATCTGCACGGGCGCCAGCAGACG
CAGCGGGGTGCCCAGGGAGGAGGCGCTGGCGTTCGCCGCACCGACGACGACGAGGCTGCCACCGACGCCATCAACCGCCA
CGGCGTGCCGTAGTTCATG-------GCTAGGCTGTCTAGCTAGCTCGTGGAGGTTATCCACGTAGTGCTCAGTGC----
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-----------------------------------------------CGCGTGGGGAAAAATGAATAAAG-T-GGTAATG
TAAAATCGCTGGCAAAGCTTGTCTACAGCATAGTGTAACACTGTAACAGTTTGCGTCC----------------------
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--------------------------------------------------AGAAAAAACATCTTCCAAGAGCTTTGAGCT
TCCAACTTGCACTGGTTGTATGTCCTCGTTCGGGTCGCGTACGTGCTCCTAATGGGCTCAAAATCTAAGTGCTTAAATTG
ATTTGATCTACACTCATCGGCACCTCTGATG--CAGAGGCCAGACTAACGAAAGCT------------------------
-----------TGCACCGATCTAAAACAAC--------------ACCAATTAAGTCGGCACGCCACCTCGGAGATGTCAA
TACGCGATTTCTTGTGCGAGGATATATTCCATCGACCGTATCCGTCATGAATCTTGTCTCCTCTTCTCGTC--ATGCATG
CAAGGATTTATTTACGCGGATACAATTCCGGTTAAAGTTCCACGCACCTTG-CTGCAGATAA----------AAAATCCA
GCGAGAGGAAGCATAAACAAGCGAGAGGAAGGATAAACAATGGACGCCGATAAGTGCCACACGTGTGGGTGTTAGGAAGT
CCGCCCACACATTTTGTGTGGTGTATAAAAGGAACGGCCCACACATTTACGTGTGGTCAAAACAATTACCACCCACATGT
TTTTTCCTCTTCCGGGCGTTGTCAGGCCTCGTACCTCCTGGTCCTGCACGCCACTGTGCGCCCGCAGTTGCCGTGGTCCA
GATCCTCGTCCATGTTCGTTTAACTGCAGTTGCCATATCGCTGAACTACGGTTGCCATGTCGGACAACTGCAGTTGCCAT
GGTTGCTCAACTGTAGTTGTCATGTATGGTCTGATCTAATGTAGTTGTCATAATTTCATAATTTTAAAAGTTGCTACATA
CTAACGCTAGGCAGTTGAAAGAGTTGTCATGTGCTTACAAGCATGTTAGGGCAGTTGCCATGTAAAAAGGAAAAGTTGCC
ATCTGCTTACGTGCACGTTAGGGCAGTTGCCATGTACATGCACATTAGGGCAGTTGTCATGTATCATGTAAAAACATATG
GCAACTCGGTAAAAGAGAGTTGCCATCTGCTTACGTGTGCACTAGACAGTTGCCGTGTACCCTGCAAAACACATGGCAAA
CTCGGGTAAAAAGAGAGAGTTGCCACCTGCTTATAAAGCACACTAGGAGCAGTTATCATGTGCACTGCAAAACACATGGC
AACTAGCAGTTTGGTTGTGGGAGAGAAGACGGGCGTGTGGGCGAGATGGCAAATGCCCACACACTAGCCTTTGTGTGTGC
GTGTAAAGTGACATGTGGACGAATTGCTATACGCGCACACACCAGCCCCTCCTGTGTGATGAAACGGCCGTATGGACGAC
CGGCTGAACGCCCACACACCATGTCAGTTCTACATGGCACTAAATACGTGCCAAAATTCGTGCGTTCATGAACGGACGCG
GATCCATGCGTATGGGCGAGATGCAAATACCCACACGTATGAGCGTTAACATTTTCGTAAACAATCAACCTGTTACAAAT
CAGAGAATCTACCTCACAACTTCCAGCCATGAAGACCACCGGCATCATCGTTAACAAGCAGCAACAAATAGTCACGTATA
TATGAGA--GGGTACGATGAGCAGCATCTCAGCACAAGAAAAGTGTAATGGAGAAAGCACGCGCAGCCATCCTCTTCCTG
CTACTCCTCGTCGATTTCGCTGCCGTAGCACGAAACGCCACCGCCGGCGAAGCAGATGGATTCCACGTCGGGGTGATCCT
AGACCTGGGATCGCCGGTGGGCAAAGTGGCGCGGACCAGCGTTCTGCTGGCCGTC
>chr5B_27
--------------------------ACCTACAACTCCTCTTCAGCATGCAGATCCGCTCACCGCGGAGGACTAAACCAA
GCTCTAAATACCAATTTTGAGACCCAAGGTGGTCTCAGAAAT-ACAATTTGCAGTCAATCACACACGGAGTAGTAAAACT
TAGCAATTTGAAGCTTAACTTCAAGAAACTTAGCCGGATTTAGG-----ATATCAAGGGTCAATCAGAAACACTAACAGC
TACTCCCTCCGTCCCGG-------AGTAGAATGAGCTCAAAGACT----------------------------CGAGAAT
CCAATTTGGCTCTAAGAAGTACTCCCTCCTTCCCAGATTGTTAGGCGTATTAGTCTTTAGCACGAAAATTAGCGTACGTG
GATTTTTATTTGACCCATCGTACAAGTTGTACACATGAAGGCAATCACGATTCAAAAAAGAAGTGAGAGGCATCCACGAT
CTTCTTTCCAATTAAATATGGACCATTAGCTTAACTGATTTAGAGAGGAAGGCATGTGCGCCTTAGAATATGGGATTGCA
TGCAGAAACTTAAACGCCCAAGATTTTGGGAAGGAGGGAGTATATGCTCATGCGCGCCTAAAATGTATTTTGTAAATGTC
TAAAATAAAGAAAAAAAATTGTGTTCATTGTC----------GCTACCTATAATTTTTTCAGACAACTTA------AGTT
TTAACCTAAAAAACAAATTGAAC-GATAAATGTTACCCACAAGTGTTACACTTAATTTTAGTTTT--TTCAT--------
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---------------------------------------------------------------------CTGACTCAATC
GGGA--------------TAGCGTCGTCGCCCTGGCGTGTTCGCCGTTTTCTCCGGC--AGATCAATGTACCCGGTCTAG
TCGACTCGAGCTACGTGTCGCCCAAGCACCGTCGCACGCCACGCGTAGACGTAGCCGCACCCTCCGCTTGCCACCGCGCG
TCCTGCAATGGCT-AGGTGGCCTCGGGACCTGCAGCAGCTCACGTGATCAGATCGACTCCACCGTCCCATCCCTAGCTCG
TATAAATCCATGGGCGACCACGCCGTGCTGGATAGGGACGCACACACTC--ACTCGTTGTCATCACTCATCAGATCGAGC
ATCCAATCCAGAAAAACCAGAGGAATCCGCAT--------GTGAGCAATGGAGGCGGCGAAGGAGAGGCGGGAGC-----
----GGAAGGCCGCCGGCGCCGGCGAGGGCGGCGACTCGGTGCAGCTGCCGACGGAGACGAGCCCGTACGTGCAGTACAA
AAAGGACGACGGCCTGGAGGACTACAAGATGCGGGCCTACGGCGCGCAGGGCCACCTCCCCGTCTCCGACGTCCCCCACG
GCTCCGGCACCGACGCGCCCACCATCCCCGGCACCGCGTTCCCGACTGAGCACCTGAACCTGCACGGGCGCCAGCAGCCG
CAGCGGGGTGCCCAGGGAGGAGGCGCTGGCGTTCGCCGCACCGACGACGACGAGGCTGCCACCGACACCATCAACCGCCA
CGGCGTGCCGTAGTTCATG-------GCTAGGCTGTCTTGCTAGCTCGAGGAGGTTATCCACGTAGTGCTCAGT------
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----------------------------------------------GCGCGTGTGGAAAAATGAATAAAG-TTGGTACTC
TAAAAGCGCTGGCAAAGCATCTCTTCAACATAATGTAATAGTTTTCGTCCAAAAAAATAGAGTCAAATACATCATGGATG
CCTCAACTTGTCCGATGCGGTCATTTTGATGTCTAAACTTGTAAAATACACAAAACTAATGCCGTAACTTGTCCGACAAA
ACTGATGTCGTAACTTGTCCGAGCGCTCAAATACGGTGCCTTCGTCCGTATCCGGGCATATGCACTACCCACATGGCGTG
CCAACGTGACATCAGCCCATATGTCAATGGGTGTGAGAAGAGTGTGCTGGTTGTTTTACAGAAAACTCTTTGTACTTTAT
ATAGTTTTCACAAAAGCTCCTAACATTTTATTTAAATACGTCAAACTGCATTGATCCCACTTGTTGGAGAACCTGAACAT
CAGGTGTTGTCTTGGTGTCGGTTGTGACCGCTGCAAGGCCTGAAACATTGTAGCGGGACTTTCTTTTTTTAGTTTCTTCT
TCTTTTCGGGCTGTAATTTCTTCTTATTTTTGGACTGGGTATCTTTGTGATATTAATATATACTCTTTGTCGGAAAAAAA
AGTGATCCCACCTGAGATAAAATAGTAATAAAAAAAAGCACCCAGCAGGATTTCAACTGAGTACGAGGGCGCACAGCCTA
TAAACATGTGCTAATCACTACGCCTAGAATAGTTGACTGTGTGATATCCTAGTATGCTTCTATTTATTAAGAAACCGGGT
GAAATAATAAAGAGAAATAAAAAAGAAAAGGTTAATTAATGGGAAACTGAAAAAAAATATTAAGAAATTCTCACGTTTGA
AAAAAATAACTTATCAACATATTACGTGCAATCAATTTTAAAAAGTGTTGGTGCATTTTAAAAAAATCATCATATTTTTG
GAAAATTCTCACGTGTATTAAGAAATTGTAAATGTGTTTTTCAAAAATGTCTGTCATGCATCCAAAAAATTTACAACATC
TATTTCTTAAAATGTTCAATTTGTATTAAAAATTTTAGTGTAAAATTATTCTTACATTTCTACAAACATGTTTTAACATG
TGTTACATATATAAAATTTATTGCTTCTACACAATGATTTTTAATACACGTTGATAAAACTTTGTTAATTTTTAATAATT
ATGTATTCTAAAAATACAATGAAGATACAAAATAATTATGCATGCTTGTGGTCCTGAGTGAAGATGCAAAACAAATTTGT
AATATTGTATAATATAATTTGAACTGTTTAAATCAACATAAATTTTTGAAAAAGTTCATGGTTAAGTCTTTGAACTATAA
ATAATAAAAATAGAATAAAAATTTAAATAGACAATAAACGCCTATTGATAATTATTGTATTATAATATTAAAATATTGTA
TATCATAAAACCAAACAGTAACTTAAAAACAGAATAGAAATTGCAGCGTACACAAAGTATTATTAGTTTTGGTGGTTAGC
GTGCGTACTAGCTATTTACCCTGGATATTCTTGGGTCGAAACCAATTCAAAGACGCAGTTAATTTTTTTCCTATTATTGA
CATATACTGAGCAAGGGCTTATTTGTGACTTTAATTAAATTATAGGGGATTTTTTGAAAAAAAAACTCGTACGCATTTCA
CCCAGCGCAGGCATTGCTCACACCCACTGACATGTGGGTCAGCCACCAGTTGTCACTCCACATGAACAACACATACGATG
GCATACGGGCGGAGACACCGTATATGCACTGTGCGACAAGTTATAGCACCATTTTTATGTTTTTTACAAGTTTAAGCACT
AAACTGACCGTAACGGACAAGTTAAGGCACCCGTGATGTATTTAACTCAAAAAAAAAACATCTTCCAAGAGCTTTGAGCT
TCCAACTTGCACTGGTTGTATGTCCTCGTTCGGGTCGC------------------------------------------
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---CTAAAACTTGCACAG---TAAAACATCATTTATTTGCACAGACCAATTAAGTCGACACGCCACCTCGGAGATGTCAA
TACGCGTTGTTC-GTGCGAGGATAGATTCCATCGACCATCTTCGTCACGAATCTTGTCTCCTCTTCTCGTCTCATGCATG
CAAGCATTTATTTACGCAGAAGCAATTCCGGTTAAAGTTCCACGCACCCTGGCTGCAGATAAAACGAACACCAAAATCCA
GTGAGGAAGTATAAACTACTAACTAG------------------------------------------------------
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--------------------------------------------------------------------CCTGTCACAAAC
CAGAGAATCTACCTCGCAACTTCCAGGATCATCG------------ATACTTGAGAAGCAGCAGCAAATAGTCATATATA
TATATATATGGGTACGATG---AGCATCTCAGCACAAGAAAAGTGCAATGGAGAAAGCACGCGCAGCCATCCTCTTCCTG
CTACTCCTCGTCGATTTCGCCGTAGCAGCACAAAACGCCACCGCCGGCGAAGCAGATGGATTCCACGTCGGGGTGATCCT
CGACCTTGGATCGCCGGTGGGCAAAGTGGCGCGGACCAGCGTTCTGCTGGCCGTC
>SNPs
SSSSSSSS---S-----------S-S------------------S---------S-------------------------
----------------S--------------S---------------------S-----S-------------S----S-
--------------------------------------S---S--SSSSSSS-------S---S----------S-----
-----------S--SSSSS-------------------S---------SSS---------SSS---S--------S----
---S------------S---------------------------------------------------------------
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----------------------------------------------------SS---------------S--S-S-----
---S-----SS--S---SS------S-S--------SSS-S---------S------------SS---S-S---S-----
---S-SSS------SSSSSSSS-------------------------------------S--S---------SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------
S-------------------------------------------------------------------------S-----
----------------------S-----S-S-------------------------------------------S-----
-----------------------------S--------S-------------------------------SS-S-S----
-------------S-----------------------------------SS-----------------------------
--------------S-------------------------------S---------------------------------
--------------------S--------S-S------------------------------------------------
------------------------------------------------------------------------------SS
----------------------------------------------S---------------------------------
----------------------------------------------------------S---------------------
-------------------SSSSSSS---------------------S----------------------------SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S-------------S---------
-------------------------------------S--S-----------SS--------------------------
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---------------------S---------SS-------S---------------SSSSSSSSSSSSSSSSSSSSSSSS
SSS-----------S------------------------SS---------------------------------------
---------S----------------------------------------------------------------------
--------S-----S-----S-----------------------------------------------------------
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>forward_938
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--------------------------------------TGATCCAGCCCCATTTCACC----------------------
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>reverse_1869
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----------------------------ATCCACGTAGTGCTCAGTGC--------------------------------
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-------------------------------------------------------
