Multiple sequence alignment - TraesCS5D01G264300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G264300 chr5D 100.000 2837 0 0 1 2837 369340582 369337746 0.000000e+00 5240.0
1 TraesCS5D01G264300 chr5B 88.537 1230 53 19 828 2016 438038067 438036885 0.000000e+00 1410.0
2 TraesCS5D01G264300 chr5B 86.294 394 32 11 2413 2806 438026268 438025897 2.630000e-110 409.0
3 TraesCS5D01G264300 chr5B 87.449 247 27 3 2174 2417 438036695 438036450 5.980000e-72 281.0
4 TraesCS5D01G264300 chr5A 89.304 776 75 6 2037 2806 471817345 471816572 0.000000e+00 966.0
5 TraesCS5D01G264300 chr5A 89.552 737 38 15 771 1491 471818631 471817918 0.000000e+00 898.0
6 TraesCS5D01G264300 chr5A 86.248 509 45 12 1542 2028 471817929 471817424 1.940000e-146 529.0
7 TraesCS5D01G264300 chr2D 83.708 178 29 0 2270 2447 102301841 102301664 4.860000e-38 169.0
8 TraesCS5D01G264300 chr3A 73.725 255 59 6 2196 2447 508530292 508530541 3.010000e-15 93.5
9 TraesCS5D01G264300 chr3B 78.295 129 19 9 2270 2394 732825364 732825487 1.090000e-09 75.0
10 TraesCS5D01G264300 chr7D 76.923 130 27 3 242 368 589088023 589087894 1.410000e-08 71.3
11 TraesCS5D01G264300 chr1D 100.000 29 0 0 370 398 479515865 479515837 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G264300 chr5D 369337746 369340582 2836 True 5240.000000 5240 100.000 1 2837 1 chr5D.!!$R1 2836
1 TraesCS5D01G264300 chr5B 438036450 438038067 1617 True 845.500000 1410 87.993 828 2417 2 chr5B.!!$R2 1589
2 TraesCS5D01G264300 chr5A 471816572 471818631 2059 True 797.666667 966 88.368 771 2806 3 chr5A.!!$R1 2035

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
731 732 0.035458 CTCCACGTCCAAAGAAGCCT 59.965 55.0 0.0 0.0 0.00 4.58 F
735 736 0.035458 ACGTCCAAAGAAGCCTGGAG 59.965 55.0 0.0 0.0 42.41 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1817 1954 0.032952 AGCGTTTGACTCCTTGCGTA 59.967 50.0 0.0 0.0 0.0 4.42 R
2031 2182 0.108281 GAGGGCTTGGTAGGTCGAAC 60.108 60.0 0.0 0.0 0.0 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 108 7.412137 AAATGCTCACAAGTTTTAAGAATGC 57.588 32.000 0.00 0.00 0.00 3.56
108 109 4.536065 TGCTCACAAGTTTTAAGAATGCG 58.464 39.130 0.00 0.00 0.00 4.73
109 110 4.036262 TGCTCACAAGTTTTAAGAATGCGT 59.964 37.500 0.00 0.00 0.00 5.24
110 111 4.976116 GCTCACAAGTTTTAAGAATGCGTT 59.024 37.500 0.00 0.00 0.00 4.84
111 112 5.115622 GCTCACAAGTTTTAAGAATGCGTTC 59.884 40.000 10.85 10.85 34.46 3.95
112 113 5.201910 TCACAAGTTTTAAGAATGCGTTCG 58.798 37.500 12.89 0.00 39.38 3.95
113 114 4.378616 CACAAGTTTTAAGAATGCGTTCGG 59.621 41.667 12.89 0.00 39.38 4.30
114 115 4.273969 ACAAGTTTTAAGAATGCGTTCGGA 59.726 37.500 12.89 2.40 39.38 4.55
115 116 4.400036 AGTTTTAAGAATGCGTTCGGAC 57.600 40.909 12.89 8.44 39.38 4.79
116 117 3.810941 AGTTTTAAGAATGCGTTCGGACA 59.189 39.130 12.89 0.00 39.38 4.02
117 118 4.454504 AGTTTTAAGAATGCGTTCGGACAT 59.545 37.500 12.89 1.89 39.38 3.06
118 119 5.048991 AGTTTTAAGAATGCGTTCGGACATT 60.049 36.000 12.89 4.40 39.38 2.71
119 120 6.148150 AGTTTTAAGAATGCGTTCGGACATTA 59.852 34.615 12.89 3.46 39.38 1.90
120 121 6.483385 TTTAAGAATGCGTTCGGACATTAA 57.517 33.333 12.89 8.99 39.38 1.40
121 122 6.483385 TTAAGAATGCGTTCGGACATTAAA 57.517 33.333 12.89 0.00 39.38 1.52
122 123 5.365403 AAGAATGCGTTCGGACATTAAAA 57.635 34.783 12.89 0.00 39.38 1.52
123 124 5.365403 AGAATGCGTTCGGACATTAAAAA 57.635 34.783 12.89 0.00 39.38 1.94
147 148 7.404671 AAAACTGTACACATTCAGAAAAGGT 57.595 32.000 0.00 0.00 35.84 3.50
148 149 7.404671 AAACTGTACACATTCAGAAAAGGTT 57.595 32.000 0.00 0.00 35.84 3.50
149 150 6.377327 ACTGTACACATTCAGAAAAGGTTG 57.623 37.500 0.00 0.00 35.84 3.77
150 151 5.181690 TGTACACATTCAGAAAAGGTTGC 57.818 39.130 0.00 0.00 0.00 4.17
151 152 4.642437 TGTACACATTCAGAAAAGGTTGCA 59.358 37.500 0.00 0.00 0.00 4.08
152 153 4.942761 ACACATTCAGAAAAGGTTGCAT 57.057 36.364 0.00 0.00 0.00 3.96
153 154 6.488344 TGTACACATTCAGAAAAGGTTGCATA 59.512 34.615 0.00 0.00 0.00 3.14
154 155 6.017400 ACACATTCAGAAAAGGTTGCATAG 57.983 37.500 0.00 0.00 0.00 2.23
155 156 5.536161 ACACATTCAGAAAAGGTTGCATAGT 59.464 36.000 0.00 0.00 0.00 2.12
156 157 6.040842 ACACATTCAGAAAAGGTTGCATAGTT 59.959 34.615 0.00 0.00 0.00 2.24
157 158 6.583806 CACATTCAGAAAAGGTTGCATAGTTC 59.416 38.462 0.00 0.00 0.00 3.01
158 159 6.265196 ACATTCAGAAAAGGTTGCATAGTTCA 59.735 34.615 0.00 0.00 0.00 3.18
159 160 5.947228 TCAGAAAAGGTTGCATAGTTCAG 57.053 39.130 0.00 0.00 0.00 3.02
160 161 5.620206 TCAGAAAAGGTTGCATAGTTCAGA 58.380 37.500 0.00 0.00 0.00 3.27
161 162 6.061441 TCAGAAAAGGTTGCATAGTTCAGAA 58.939 36.000 0.00 0.00 0.00 3.02
162 163 6.545666 TCAGAAAAGGTTGCATAGTTCAGAAA 59.454 34.615 0.00 0.00 0.00 2.52
163 164 7.068103 TCAGAAAAGGTTGCATAGTTCAGAAAA 59.932 33.333 0.00 0.00 0.00 2.29
164 165 7.869429 CAGAAAAGGTTGCATAGTTCAGAAAAT 59.131 33.333 0.00 0.00 0.00 1.82
165 166 9.077885 AGAAAAGGTTGCATAGTTCAGAAAATA 57.922 29.630 0.00 0.00 0.00 1.40
166 167 9.691362 GAAAAGGTTGCATAGTTCAGAAAATAA 57.309 29.630 0.00 0.00 0.00 1.40
206 207 9.959749 AATGTTAACATGTATTTGAAAGAACGT 57.040 25.926 21.46 0.00 36.56 3.99
207 208 9.959749 ATGTTAACATGTATTTGAAAGAACGTT 57.040 25.926 20.19 0.00 34.83 3.99
208 209 9.440784 TGTTAACATGTATTTGAAAGAACGTTC 57.559 29.630 20.71 20.71 0.00 3.95
209 210 9.440784 GTTAACATGTATTTGAAAGAACGTTCA 57.559 29.630 28.78 7.35 35.72 3.18
220 221 8.918961 TTGAAAGAACGTTCAAAACATGTATT 57.081 26.923 28.78 8.50 42.94 1.89
222 223 9.440784 TGAAAGAACGTTCAAAACATGTATTAC 57.559 29.630 28.78 0.00 34.59 1.89
223 224 9.440784 GAAAGAACGTTCAAAACATGTATTACA 57.559 29.630 28.78 0.00 0.00 2.41
224 225 9.790389 AAAGAACGTTCAAAACATGTATTACAA 57.210 25.926 28.78 0.00 0.00 2.41
225 226 9.790389 AAGAACGTTCAAAACATGTATTACAAA 57.210 25.926 28.78 0.00 0.00 2.83
226 227 9.790389 AGAACGTTCAAAACATGTATTACAAAA 57.210 25.926 28.78 0.00 0.00 2.44
230 231 9.300441 CGTTCAAAACATGTATTACAAAAATGC 57.700 29.630 0.00 0.00 0.00 3.56
231 232 9.300441 GTTCAAAACATGTATTACAAAAATGCG 57.700 29.630 0.00 0.00 0.00 4.73
232 233 8.803201 TCAAAACATGTATTACAAAAATGCGA 57.197 26.923 0.00 0.00 0.00 5.10
233 234 9.249457 TCAAAACATGTATTACAAAAATGCGAA 57.751 25.926 0.00 0.00 0.00 4.70
335 336 9.973450 TTCGGAAAAATGTTAATCATCTTTTGA 57.027 25.926 0.00 0.00 39.12 2.69
336 337 9.973450 TCGGAAAAATGTTAATCATCTTTTGAA 57.027 25.926 0.00 0.00 38.03 2.69
379 380 7.716799 AAAAATGCTCCTTATGTACAATCCA 57.283 32.000 0.00 0.00 0.00 3.41
380 381 7.902920 AAAATGCTCCTTATGTACAATCCAT 57.097 32.000 0.00 0.00 0.00 3.41
381 382 8.995027 AAAATGCTCCTTATGTACAATCCATA 57.005 30.769 0.00 0.00 0.00 2.74
382 383 9.592196 AAAATGCTCCTTATGTACAATCCATAT 57.408 29.630 0.00 0.00 0.00 1.78
383 384 8.571461 AATGCTCCTTATGTACAATCCATATG 57.429 34.615 0.00 0.00 0.00 1.78
384 385 7.315066 TGCTCCTTATGTACAATCCATATGA 57.685 36.000 3.65 0.00 0.00 2.15
385 386 7.744733 TGCTCCTTATGTACAATCCATATGAA 58.255 34.615 3.65 0.00 0.00 2.57
386 387 8.217111 TGCTCCTTATGTACAATCCATATGAAA 58.783 33.333 3.65 0.00 0.00 2.69
387 388 9.066892 GCTCCTTATGTACAATCCATATGAAAA 57.933 33.333 3.65 0.00 0.00 2.29
401 402 8.806429 TCCATATGAAAAATGTAGACATGTGT 57.194 30.769 1.15 0.22 36.56 3.72
402 403 9.241919 TCCATATGAAAAATGTAGACATGTGTT 57.758 29.630 1.15 0.00 36.56 3.32
403 404 9.292846 CCATATGAAAAATGTAGACATGTGTTG 57.707 33.333 1.15 0.00 36.56 3.33
407 408 9.814899 ATGAAAAATGTAGACATGTGTTGAAAA 57.185 25.926 1.15 0.00 36.56 2.29
408 409 9.645059 TGAAAAATGTAGACATGTGTTGAAAAA 57.355 25.926 1.15 0.00 36.56 1.94
427 428 5.845391 AAAAACCCGAAGACAATCAGAAA 57.155 34.783 0.00 0.00 0.00 2.52
428 429 5.845391 AAAACCCGAAGACAATCAGAAAA 57.155 34.783 0.00 0.00 0.00 2.29
429 430 5.845391 AAACCCGAAGACAATCAGAAAAA 57.155 34.783 0.00 0.00 0.00 1.94
430 431 5.438761 AACCCGAAGACAATCAGAAAAAG 57.561 39.130 0.00 0.00 0.00 2.27
431 432 3.821033 ACCCGAAGACAATCAGAAAAAGG 59.179 43.478 0.00 0.00 0.00 3.11
432 433 3.821033 CCCGAAGACAATCAGAAAAAGGT 59.179 43.478 0.00 0.00 0.00 3.50
433 434 4.320494 CCCGAAGACAATCAGAAAAAGGTG 60.320 45.833 0.00 0.00 0.00 4.00
434 435 4.515191 CCGAAGACAATCAGAAAAAGGTGA 59.485 41.667 0.00 0.00 0.00 4.02
435 436 5.008613 CCGAAGACAATCAGAAAAAGGTGAA 59.991 40.000 0.00 0.00 0.00 3.18
436 437 6.459573 CCGAAGACAATCAGAAAAAGGTGAAA 60.460 38.462 0.00 0.00 0.00 2.69
437 438 6.972328 CGAAGACAATCAGAAAAAGGTGAAAA 59.028 34.615 0.00 0.00 0.00 2.29
438 439 7.044052 CGAAGACAATCAGAAAAAGGTGAAAAC 60.044 37.037 0.00 0.00 0.00 2.43
439 440 7.169158 AGACAATCAGAAAAAGGTGAAAACA 57.831 32.000 0.00 0.00 0.00 2.83
440 441 7.610865 AGACAATCAGAAAAAGGTGAAAACAA 58.389 30.769 0.00 0.00 0.00 2.83
441 442 8.260114 AGACAATCAGAAAAAGGTGAAAACAAT 58.740 29.630 0.00 0.00 0.00 2.71
442 443 8.200364 ACAATCAGAAAAAGGTGAAAACAATG 57.800 30.769 0.00 0.00 0.00 2.82
443 444 8.040132 ACAATCAGAAAAAGGTGAAAACAATGA 58.960 29.630 0.00 0.00 0.00 2.57
444 445 8.881743 CAATCAGAAAAAGGTGAAAACAATGAA 58.118 29.630 0.00 0.00 0.00 2.57
445 446 9.447157 AATCAGAAAAAGGTGAAAACAATGAAA 57.553 25.926 0.00 0.00 0.00 2.69
446 447 8.477984 TCAGAAAAAGGTGAAAACAATGAAAG 57.522 30.769 0.00 0.00 0.00 2.62
447 448 8.310382 TCAGAAAAAGGTGAAAACAATGAAAGA 58.690 29.630 0.00 0.00 0.00 2.52
448 449 8.934825 CAGAAAAAGGTGAAAACAATGAAAGAA 58.065 29.630 0.00 0.00 0.00 2.52
449 450 9.500785 AGAAAAAGGTGAAAACAATGAAAGAAA 57.499 25.926 0.00 0.00 0.00 2.52
450 451 9.541724 GAAAAAGGTGAAAACAATGAAAGAAAC 57.458 29.630 0.00 0.00 0.00 2.78
451 452 8.614469 AAAAGGTGAAAACAATGAAAGAAACA 57.386 26.923 0.00 0.00 0.00 2.83
452 453 8.614469 AAAGGTGAAAACAATGAAAGAAACAA 57.386 26.923 0.00 0.00 0.00 2.83
453 454 8.614469 AAGGTGAAAACAATGAAAGAAACAAA 57.386 26.923 0.00 0.00 0.00 2.83
454 455 8.255394 AGGTGAAAACAATGAAAGAAACAAAG 57.745 30.769 0.00 0.00 0.00 2.77
455 456 8.093927 AGGTGAAAACAATGAAAGAAACAAAGA 58.906 29.630 0.00 0.00 0.00 2.52
456 457 8.716909 GGTGAAAACAATGAAAGAAACAAAGAA 58.283 29.630 0.00 0.00 0.00 2.52
579 580 7.997107 AAAAGAAATAAAAACAGGAACCGTC 57.003 32.000 0.00 0.00 0.00 4.79
580 581 5.700722 AGAAATAAAAACAGGAACCGTCC 57.299 39.130 0.00 0.00 45.35 4.79
588 589 2.048877 GGAACCGTCCGAAGCGAA 60.049 61.111 0.00 0.00 33.05 4.70
589 590 2.378084 GGAACCGTCCGAAGCGAAC 61.378 63.158 0.00 0.00 33.05 3.95
590 591 1.372623 GAACCGTCCGAAGCGAACT 60.373 57.895 0.00 0.00 0.00 3.01
591 592 1.615107 GAACCGTCCGAAGCGAACTG 61.615 60.000 0.00 0.00 0.00 3.16
592 593 2.049433 CCGTCCGAAGCGAACTGT 60.049 61.111 0.00 0.00 0.00 3.55
593 594 1.210931 CCGTCCGAAGCGAACTGTA 59.789 57.895 0.00 0.00 0.00 2.74
594 595 0.797249 CCGTCCGAAGCGAACTGTAG 60.797 60.000 0.00 0.00 0.00 2.74
595 596 1.403972 CGTCCGAAGCGAACTGTAGC 61.404 60.000 0.00 0.62 0.00 3.58
596 597 1.077089 GTCCGAAGCGAACTGTAGCC 61.077 60.000 4.84 0.00 0.00 3.93
597 598 1.810030 CCGAAGCGAACTGTAGCCC 60.810 63.158 4.84 0.00 0.00 5.19
598 599 1.080093 CGAAGCGAACTGTAGCCCA 60.080 57.895 4.84 0.00 0.00 5.36
599 600 0.460284 CGAAGCGAACTGTAGCCCAT 60.460 55.000 4.84 0.00 0.00 4.00
600 601 1.739067 GAAGCGAACTGTAGCCCATT 58.261 50.000 4.84 0.00 0.00 3.16
601 602 2.737359 CGAAGCGAACTGTAGCCCATTA 60.737 50.000 4.84 0.00 0.00 1.90
602 603 2.311124 AGCGAACTGTAGCCCATTAC 57.689 50.000 4.84 0.00 0.00 1.89
603 604 0.928229 GCGAACTGTAGCCCATTACG 59.072 55.000 0.00 0.00 0.00 3.18
604 605 0.928229 CGAACTGTAGCCCATTACGC 59.072 55.000 0.00 0.00 0.00 4.42
605 606 1.470979 CGAACTGTAGCCCATTACGCT 60.471 52.381 0.00 0.00 40.45 5.07
606 607 2.202566 GAACTGTAGCCCATTACGCTC 58.797 52.381 0.00 0.00 37.79 5.03
607 608 0.102481 ACTGTAGCCCATTACGCTCG 59.898 55.000 0.00 0.00 37.79 5.03
608 609 0.384309 CTGTAGCCCATTACGCTCGA 59.616 55.000 0.00 0.00 37.79 4.04
609 610 0.818938 TGTAGCCCATTACGCTCGAA 59.181 50.000 0.00 0.00 37.79 3.71
610 611 1.206523 GTAGCCCATTACGCTCGAAC 58.793 55.000 0.00 0.00 37.79 3.95
611 612 0.248743 TAGCCCATTACGCTCGAACG 60.249 55.000 6.68 6.68 37.79 3.95
612 613 3.003478 CCCATTACGCTCGAACGC 58.997 61.111 8.36 0.00 36.19 4.84
613 614 1.807981 CCCATTACGCTCGAACGCA 60.808 57.895 8.36 0.00 36.19 5.24
614 615 1.343821 CCATTACGCTCGAACGCAC 59.656 57.895 8.36 0.00 36.19 5.34
615 616 1.014825 CATTACGCTCGAACGCACG 60.015 57.895 8.36 0.00 36.19 5.34
616 617 1.154169 ATTACGCTCGAACGCACGA 60.154 52.632 8.36 4.63 40.00 4.35
617 618 0.730155 ATTACGCTCGAACGCACGAA 60.730 50.000 8.36 0.00 41.67 3.85
618 619 0.933973 TTACGCTCGAACGCACGAAA 60.934 50.000 8.36 0.00 41.67 3.46
619 620 0.933973 TACGCTCGAACGCACGAAAA 60.934 50.000 8.36 0.08 41.67 2.29
620 621 1.129809 CGCTCGAACGCACGAAAAT 59.870 52.632 0.00 0.00 41.67 1.82
621 622 1.114515 CGCTCGAACGCACGAAAATG 61.115 55.000 0.00 0.00 41.67 2.32
622 623 0.789383 GCTCGAACGCACGAAAATGG 60.789 55.000 0.00 0.00 41.67 3.16
623 624 0.179225 CTCGAACGCACGAAAATGGG 60.179 55.000 0.00 0.00 41.67 4.00
624 625 1.795962 CGAACGCACGAAAATGGGC 60.796 57.895 0.00 0.00 36.02 5.36
625 626 1.579429 GAACGCACGAAAATGGGCT 59.421 52.632 0.00 0.00 36.02 5.19
626 627 0.729140 GAACGCACGAAAATGGGCTG 60.729 55.000 0.00 0.00 36.02 4.85
627 628 2.141122 AACGCACGAAAATGGGCTGG 62.141 55.000 0.00 0.00 36.02 4.85
628 629 2.125952 GCACGAAAATGGGCTGGC 60.126 61.111 0.00 0.00 0.00 4.85
629 630 2.573340 CACGAAAATGGGCTGGCC 59.427 61.111 14.23 14.23 0.00 5.36
630 631 3.061848 ACGAAAATGGGCTGGCCG 61.062 61.111 16.08 4.79 36.85 6.13
631 632 3.825611 CGAAAATGGGCTGGCCGG 61.826 66.667 16.08 7.41 36.85 6.13
632 633 2.679996 GAAAATGGGCTGGCCGGT 60.680 61.111 14.55 3.85 36.85 5.28
633 634 1.379309 GAAAATGGGCTGGCCGGTA 60.379 57.895 14.55 0.09 36.85 4.02
634 635 1.663379 GAAAATGGGCTGGCCGGTAC 61.663 60.000 14.55 7.08 36.85 3.34
635 636 2.150014 AAAATGGGCTGGCCGGTACT 62.150 55.000 14.55 0.00 36.85 2.73
636 637 2.150014 AAATGGGCTGGCCGGTACTT 62.150 55.000 14.55 1.82 36.85 2.24
637 638 2.837031 AATGGGCTGGCCGGTACTTG 62.837 60.000 14.55 0.00 36.85 3.16
638 639 4.029809 GGGCTGGCCGGTACTTGT 62.030 66.667 14.55 0.00 36.85 3.16
639 640 2.662070 GGGCTGGCCGGTACTTGTA 61.662 63.158 14.55 0.00 36.85 2.41
640 641 1.153429 GGCTGGCCGGTACTTGTAG 60.153 63.158 14.55 0.00 0.00 2.74
641 642 1.814169 GCTGGCCGGTACTTGTAGC 60.814 63.158 14.55 1.19 0.00 3.58
642 643 1.594833 CTGGCCGGTACTTGTAGCA 59.405 57.895 2.29 0.00 0.00 3.49
643 644 0.739813 CTGGCCGGTACTTGTAGCAC 60.740 60.000 2.29 2.21 0.00 4.40
644 645 1.449070 GGCCGGTACTTGTAGCACC 60.449 63.158 1.90 6.94 0.00 5.01
645 646 1.595357 GCCGGTACTTGTAGCACCT 59.405 57.895 1.90 0.00 29.16 4.00
646 647 0.819582 GCCGGTACTTGTAGCACCTA 59.180 55.000 1.90 0.00 29.16 3.08
647 648 1.470458 GCCGGTACTTGTAGCACCTAC 60.470 57.143 1.90 0.00 37.46 3.18
648 649 1.820519 CCGGTACTTGTAGCACCTACA 59.179 52.381 10.05 1.18 44.00 2.74
649 650 2.159282 CCGGTACTTGTAGCACCTACAG 60.159 54.545 10.05 3.72 45.83 2.74
650 651 2.159282 CGGTACTTGTAGCACCTACAGG 60.159 54.545 11.48 11.48 45.83 4.00
651 652 2.418334 GGTACTTGTAGCACCTACAGGC 60.418 54.545 12.60 0.85 45.83 4.85
652 653 0.246635 ACTTGTAGCACCTACAGGCG 59.753 55.000 12.60 5.93 45.83 5.52
653 654 0.530744 CTTGTAGCACCTACAGGCGA 59.469 55.000 5.37 0.00 45.83 5.54
654 655 1.137086 CTTGTAGCACCTACAGGCGAT 59.863 52.381 5.37 0.00 45.83 4.58
655 656 0.459899 TGTAGCACCTACAGGCGATG 59.540 55.000 1.18 0.00 41.33 3.84
656 657 0.876342 GTAGCACCTACAGGCGATGC 60.876 60.000 0.00 0.00 36.98 3.91
671 672 5.786401 GGCGATGCCTATTATAACTCAAG 57.214 43.478 0.00 0.00 46.69 3.02
672 673 5.238583 GGCGATGCCTATTATAACTCAAGT 58.761 41.667 0.00 0.00 46.69 3.16
673 674 6.395629 GGCGATGCCTATTATAACTCAAGTA 58.604 40.000 0.00 0.00 46.69 2.24
674 675 7.042335 GGCGATGCCTATTATAACTCAAGTAT 58.958 38.462 0.00 0.00 46.69 2.12
675 676 7.010552 GGCGATGCCTATTATAACTCAAGTATG 59.989 40.741 0.00 0.00 46.69 2.39
676 677 7.010552 GCGATGCCTATTATAACTCAAGTATGG 59.989 40.741 0.00 0.00 0.00 2.74
677 678 7.492669 CGATGCCTATTATAACTCAAGTATGGG 59.507 40.741 0.00 0.00 0.00 4.00
678 679 6.472887 TGCCTATTATAACTCAAGTATGGGC 58.527 40.000 9.77 9.77 37.40 5.36
679 680 5.581085 GCCTATTATAACTCAAGTATGGGCG 59.419 44.000 3.26 0.00 30.82 6.13
680 681 6.573680 GCCTATTATAACTCAAGTATGGGCGA 60.574 42.308 3.26 0.00 30.82 5.54
681 682 7.556844 CCTATTATAACTCAAGTATGGGCGAT 58.443 38.462 0.00 0.00 0.00 4.58
682 683 8.692710 CCTATTATAACTCAAGTATGGGCGATA 58.307 37.037 0.00 0.00 0.00 2.92
683 684 9.737427 CTATTATAACTCAAGTATGGGCGATAG 57.263 37.037 0.00 0.00 0.00 2.08
684 685 7.770366 TTATAACTCAAGTATGGGCGATAGA 57.230 36.000 0.00 0.00 39.76 1.98
685 686 6.859112 ATAACTCAAGTATGGGCGATAGAT 57.141 37.500 0.00 0.00 39.76 1.98
686 687 5.552870 AACTCAAGTATGGGCGATAGATT 57.447 39.130 0.00 0.00 39.76 2.40
687 688 4.887748 ACTCAAGTATGGGCGATAGATTG 58.112 43.478 7.62 7.62 39.76 2.67
688 689 3.664107 TCAAGTATGGGCGATAGATTGC 58.336 45.455 8.61 0.00 39.76 3.56
689 690 3.070878 TCAAGTATGGGCGATAGATTGCA 59.929 43.478 4.17 0.00 38.98 4.08
690 691 3.988976 AGTATGGGCGATAGATTGCAT 57.011 42.857 4.17 0.00 38.98 3.96
691 692 4.292186 AGTATGGGCGATAGATTGCATT 57.708 40.909 4.17 0.00 38.98 3.56
692 693 4.655963 AGTATGGGCGATAGATTGCATTT 58.344 39.130 4.17 0.00 38.98 2.32
693 694 3.928727 ATGGGCGATAGATTGCATTTG 57.071 42.857 4.17 0.00 38.98 2.32
694 695 1.337703 TGGGCGATAGATTGCATTTGC 59.662 47.619 4.17 0.00 38.98 3.68
695 696 1.664016 GGGCGATAGATTGCATTTGCG 60.664 52.381 4.17 0.00 41.53 4.85
696 697 1.047739 GCGATAGATTGCATTTGCGC 58.952 50.000 0.00 0.00 41.53 6.09
697 698 1.678360 CGATAGATTGCATTTGCGCC 58.322 50.000 4.18 0.00 41.53 6.53
698 699 1.265095 CGATAGATTGCATTTGCGCCT 59.735 47.619 4.18 0.00 41.53 5.52
699 700 2.287188 CGATAGATTGCATTTGCGCCTT 60.287 45.455 4.18 0.00 41.53 4.35
700 701 2.565210 TAGATTGCATTTGCGCCTTG 57.435 45.000 4.18 0.17 45.83 3.61
701 702 0.108520 AGATTGCATTTGCGCCTTGG 60.109 50.000 4.18 0.00 45.83 3.61
702 703 0.108709 GATTGCATTTGCGCCTTGGA 60.109 50.000 4.18 0.00 45.83 3.53
703 704 0.538118 ATTGCATTTGCGCCTTGGAT 59.462 45.000 4.18 0.00 45.83 3.41
704 705 0.108709 TTGCATTTGCGCCTTGGATC 60.109 50.000 4.18 0.00 45.83 3.36
705 706 1.249469 TGCATTTGCGCCTTGGATCA 61.249 50.000 4.18 0.00 45.83 2.92
706 707 0.803380 GCATTTGCGCCTTGGATCAC 60.803 55.000 4.18 0.00 0.00 3.06
707 708 0.523968 CATTTGCGCCTTGGATCACG 60.524 55.000 4.18 0.00 0.00 4.35
708 709 0.960364 ATTTGCGCCTTGGATCACGT 60.960 50.000 4.18 0.00 0.00 4.49
709 710 1.851021 TTTGCGCCTTGGATCACGTG 61.851 55.000 9.94 9.94 0.00 4.49
710 711 3.499737 GCGCCTTGGATCACGTGG 61.500 66.667 17.00 0.00 0.00 4.94
711 712 2.264480 CGCCTTGGATCACGTGGA 59.736 61.111 17.00 2.69 0.00 4.02
712 713 2.100631 CGCCTTGGATCACGTGGAC 61.101 63.158 17.00 9.89 0.00 4.02
713 714 1.296715 GCCTTGGATCACGTGGACT 59.703 57.895 17.00 0.26 0.00 3.85
714 715 0.741221 GCCTTGGATCACGTGGACTC 60.741 60.000 17.00 10.15 0.00 3.36
715 716 0.108138 CCTTGGATCACGTGGACTCC 60.108 60.000 17.00 18.60 0.00 3.85
716 717 0.608130 CTTGGATCACGTGGACTCCA 59.392 55.000 23.03 23.03 33.88 3.86
729 730 1.149148 GACTCCACGTCCAAAGAAGC 58.851 55.000 0.00 0.00 36.62 3.86
730 731 0.250338 ACTCCACGTCCAAAGAAGCC 60.250 55.000 0.00 0.00 0.00 4.35
731 732 0.035458 CTCCACGTCCAAAGAAGCCT 59.965 55.000 0.00 0.00 0.00 4.58
732 733 0.250295 TCCACGTCCAAAGAAGCCTG 60.250 55.000 0.00 0.00 0.00 4.85
733 734 1.237285 CCACGTCCAAAGAAGCCTGG 61.237 60.000 0.00 0.00 0.00 4.45
734 735 0.250295 CACGTCCAAAGAAGCCTGGA 60.250 55.000 0.00 0.00 39.47 3.86
735 736 0.035458 ACGTCCAAAGAAGCCTGGAG 59.965 55.000 0.00 0.00 42.41 3.86
736 737 0.321671 CGTCCAAAGAAGCCTGGAGA 59.678 55.000 0.00 0.00 42.41 3.71
737 738 1.814793 GTCCAAAGAAGCCTGGAGAC 58.185 55.000 0.00 0.00 42.41 3.36
738 739 0.321671 TCCAAAGAAGCCTGGAGACG 59.678 55.000 0.00 0.00 36.79 4.18
739 740 0.674895 CCAAAGAAGCCTGGAGACGG 60.675 60.000 0.00 0.00 34.35 4.79
740 741 0.321671 CAAAGAAGCCTGGAGACGGA 59.678 55.000 0.00 0.00 39.98 4.69
741 742 1.056660 AAAGAAGCCTGGAGACGGAA 58.943 50.000 0.00 0.00 39.98 4.30
742 743 0.321996 AAGAAGCCTGGAGACGGAAC 59.678 55.000 0.00 0.00 39.98 3.62
755 756 4.729856 GGAACGACGTCCCACCCG 62.730 72.222 10.58 0.00 0.00 5.28
756 757 3.673484 GAACGACGTCCCACCCGA 61.673 66.667 10.58 0.00 0.00 5.14
757 758 3.903932 GAACGACGTCCCACCCGAC 62.904 68.421 10.58 0.00 0.00 4.79
767 768 2.677524 CACCCGACGACCCAGGTA 60.678 66.667 0.00 0.00 0.00 3.08
768 769 2.677875 ACCCGACGACCCAGGTAC 60.678 66.667 0.00 0.00 0.00 3.34
769 770 3.455469 CCCGACGACCCAGGTACC 61.455 72.222 2.73 2.73 0.00 3.34
781 782 3.729698 GGTACCAAACCGTGCCGC 61.730 66.667 7.15 0.00 38.88 6.53
783 784 2.357760 TACCAAACCGTGCCGCTC 60.358 61.111 0.00 0.00 0.00 5.03
817 818 3.931247 CAACGGGGTCCACGTCCA 61.931 66.667 21.82 0.00 44.83 4.02
818 819 3.622826 AACGGGGTCCACGTCCAG 61.623 66.667 21.82 0.00 44.83 3.86
821 822 4.699522 GGGGTCCACGTCCAGCAC 62.700 72.222 0.00 0.00 0.00 4.40
822 823 4.699522 GGGTCCACGTCCAGCACC 62.700 72.222 0.00 0.00 0.00 5.01
823 824 3.936203 GGTCCACGTCCAGCACCA 61.936 66.667 0.00 0.00 0.00 4.17
824 825 2.357517 GTCCACGTCCAGCACCAG 60.358 66.667 0.00 0.00 0.00 4.00
825 826 4.314440 TCCACGTCCAGCACCAGC 62.314 66.667 0.00 0.00 42.56 4.85
826 827 4.624364 CCACGTCCAGCACCAGCA 62.624 66.667 0.00 0.00 45.49 4.41
1321 1358 2.908940 GCCGCCCGCCTACTACTA 60.909 66.667 0.00 0.00 0.00 1.82
1322 1359 2.917198 GCCGCCCGCCTACTACTAG 61.917 68.421 0.00 0.00 0.00 2.57
1323 1360 1.228063 CCGCCCGCCTACTACTAGA 60.228 63.158 0.00 0.00 0.00 2.43
1324 1361 1.235948 CCGCCCGCCTACTACTAGAG 61.236 65.000 0.00 0.00 0.00 2.43
1333 1370 3.746940 CCTACTACTAGAGAGAGCCCAC 58.253 54.545 0.00 0.00 0.00 4.61
1364 1401 1.228925 CTCCCCCGGGATCTACTCC 60.229 68.421 26.32 0.00 44.24 3.85
1391 1428 2.053865 CACGGCATGGATTGGGCTT 61.054 57.895 0.00 0.00 0.00 4.35
1485 1589 2.828549 GGGCCGGTCGATTTGCAT 60.829 61.111 1.90 0.00 0.00 3.96
1486 1590 2.414785 GGGCCGGTCGATTTGCATT 61.415 57.895 1.90 0.00 0.00 3.56
1487 1591 1.226660 GGCCGGTCGATTTGCATTG 60.227 57.895 1.90 0.00 0.00 2.82
1488 1592 1.653094 GGCCGGTCGATTTGCATTGA 61.653 55.000 1.90 0.00 0.00 2.57
1489 1593 0.381801 GCCGGTCGATTTGCATTGAT 59.618 50.000 1.90 0.00 0.00 2.57
1490 1594 1.202290 GCCGGTCGATTTGCATTGATT 60.202 47.619 1.90 0.00 0.00 2.57
1491 1595 2.735126 GCCGGTCGATTTGCATTGATTT 60.735 45.455 1.90 0.00 0.00 2.17
1492 1596 3.510719 CCGGTCGATTTGCATTGATTTT 58.489 40.909 0.00 0.00 0.00 1.82
1493 1597 3.547468 CCGGTCGATTTGCATTGATTTTC 59.453 43.478 0.00 0.00 0.00 2.29
1494 1598 4.414852 CGGTCGATTTGCATTGATTTTCT 58.585 39.130 0.00 0.00 0.00 2.52
1495 1599 4.263677 CGGTCGATTTGCATTGATTTTCTG 59.736 41.667 0.00 0.00 0.00 3.02
1496 1600 4.032104 GGTCGATTTGCATTGATTTTCTGC 59.968 41.667 0.00 0.00 36.45 4.26
1497 1601 4.860907 GTCGATTTGCATTGATTTTCTGCT 59.139 37.500 0.00 0.00 36.84 4.24
1498 1602 4.860352 TCGATTTGCATTGATTTTCTGCTG 59.140 37.500 0.00 0.00 36.84 4.41
1499 1603 4.860352 CGATTTGCATTGATTTTCTGCTGA 59.140 37.500 0.00 0.00 36.84 4.26
1500 1604 5.346551 CGATTTGCATTGATTTTCTGCTGAA 59.653 36.000 1.33 1.33 36.84 3.02
1501 1605 6.035650 CGATTTGCATTGATTTTCTGCTGAAT 59.964 34.615 6.88 0.00 36.84 2.57
1502 1606 7.412563 CGATTTGCATTGATTTTCTGCTGAATT 60.413 33.333 6.88 0.00 36.84 2.17
1503 1607 8.780846 ATTTGCATTGATTTTCTGCTGAATTA 57.219 26.923 6.88 0.00 36.84 1.40
1504 1608 8.604640 TTTGCATTGATTTTCTGCTGAATTAA 57.395 26.923 6.88 0.06 36.84 1.40
1505 1609 8.780846 TTGCATTGATTTTCTGCTGAATTAAT 57.219 26.923 6.88 5.05 36.84 1.40
1506 1610 8.780846 TGCATTGATTTTCTGCTGAATTAATT 57.219 26.923 6.88 0.00 36.84 1.40
1507 1611 8.875803 TGCATTGATTTTCTGCTGAATTAATTC 58.124 29.630 19.37 19.37 36.84 2.17
1508 1612 8.333186 GCATTGATTTTCTGCTGAATTAATTCC 58.667 33.333 22.42 10.71 35.97 3.01
1509 1613 9.595823 CATTGATTTTCTGCTGAATTAATTCCT 57.404 29.630 22.42 0.00 35.97 3.36
1512 1616 9.643693 TGATTTTCTGCTGAATTAATTCCTTTC 57.356 29.630 22.42 10.95 35.97 2.62
1513 1617 8.693542 ATTTTCTGCTGAATTAATTCCTTTCG 57.306 30.769 22.42 9.56 35.97 3.46
1514 1618 6.817765 TTCTGCTGAATTAATTCCTTTCGT 57.182 33.333 22.42 0.00 35.97 3.85
1515 1619 6.817765 TCTGCTGAATTAATTCCTTTCGTT 57.182 33.333 22.42 0.00 35.97 3.85
1516 1620 6.611381 TCTGCTGAATTAATTCCTTTCGTTG 58.389 36.000 22.42 7.46 35.97 4.10
1517 1621 5.160641 TGCTGAATTAATTCCTTTCGTTGC 58.839 37.500 22.42 14.03 35.97 4.17
1518 1622 5.048083 TGCTGAATTAATTCCTTTCGTTGCT 60.048 36.000 22.42 0.00 35.97 3.91
1519 1623 5.863935 GCTGAATTAATTCCTTTCGTTGCTT 59.136 36.000 22.42 0.00 35.97 3.91
1520 1624 6.033937 GCTGAATTAATTCCTTTCGTTGCTTC 59.966 38.462 22.42 0.00 35.97 3.86
1521 1625 6.083630 TGAATTAATTCCTTTCGTTGCTTCG 58.916 36.000 22.42 0.00 35.97 3.79
1522 1626 2.331809 AATTCCTTTCGTTGCTTCGC 57.668 45.000 0.00 0.00 0.00 4.70
1523 1627 1.523758 ATTCCTTTCGTTGCTTCGCT 58.476 45.000 0.00 0.00 0.00 4.93
1524 1628 0.865769 TTCCTTTCGTTGCTTCGCTC 59.134 50.000 0.00 0.00 0.00 5.03
1525 1629 0.949105 TCCTTTCGTTGCTTCGCTCC 60.949 55.000 0.00 0.00 0.00 4.70
1526 1630 1.130613 CTTTCGTTGCTTCGCTCCG 59.869 57.895 0.00 0.00 0.00 4.63
1527 1631 1.282248 CTTTCGTTGCTTCGCTCCGA 61.282 55.000 0.00 0.00 32.04 4.55
1528 1632 0.669318 TTTCGTTGCTTCGCTCCGAT 60.669 50.000 0.00 0.00 35.23 4.18
1529 1633 1.351430 TTCGTTGCTTCGCTCCGATG 61.351 55.000 0.00 0.00 35.23 3.84
1530 1634 1.805539 CGTTGCTTCGCTCCGATGA 60.806 57.895 4.93 0.00 35.23 2.92
1531 1635 1.148157 CGTTGCTTCGCTCCGATGAT 61.148 55.000 4.93 0.00 35.23 2.45
1532 1636 0.302890 GTTGCTTCGCTCCGATGATG 59.697 55.000 4.93 0.00 35.23 3.07
1533 1637 0.108186 TTGCTTCGCTCCGATGATGT 60.108 50.000 4.93 0.00 35.23 3.06
1534 1638 0.528466 TGCTTCGCTCCGATGATGTC 60.528 55.000 4.93 0.00 35.23 3.06
1551 1655 8.172159 GATGATGTCGATATTTTAGCAGAGAG 57.828 38.462 0.00 0.00 0.00 3.20
1588 1692 6.902224 TGATGATGACAATTACCGTTACTG 57.098 37.500 0.00 0.00 0.00 2.74
1590 1694 7.548967 TGATGATGACAATTACCGTTACTGTA 58.451 34.615 0.00 0.00 0.00 2.74
1640 1764 4.326826 TGCTGCTCATTAGTTTAGTGCTT 58.673 39.130 0.00 0.00 0.00 3.91
1646 1770 6.092670 TGCTCATTAGTTTAGTGCTTCATCAC 59.907 38.462 0.00 0.00 37.24 3.06
1648 1772 5.580691 TCATTAGTTTAGTGCTTCATCACGG 59.419 40.000 0.00 0.00 41.61 4.94
1665 1789 2.639286 GCTCCGTTTGTGCCTGTG 59.361 61.111 0.00 0.00 0.00 3.66
1666 1790 2.908073 GCTCCGTTTGTGCCTGTGG 61.908 63.158 0.00 0.00 0.00 4.17
1701 1828 9.109393 TCATTAGTTTAGCAAATACTCCATCAC 57.891 33.333 0.00 0.00 0.00 3.06
1817 1954 2.537560 GCACGAACTGCACTGCACT 61.538 57.895 0.00 0.00 46.29 4.40
1847 1984 0.465824 TCAAACGCTTTCGGGGGAAA 60.466 50.000 0.00 0.00 40.69 3.13
1849 1986 1.788067 AAACGCTTTCGGGGGAAACG 61.788 55.000 8.74 8.74 40.69 3.60
1903 2043 7.060403 GTGTTGTTGTGTACTCTACGATACTTC 59.940 40.741 14.66 0.96 0.00 3.01
1927 2075 0.254178 GGGTCATGGTCAGTCAGCAT 59.746 55.000 0.00 0.00 44.46 3.79
2009 2160 1.134694 GAGTTGAAACGGCGATGCC 59.865 57.895 16.62 0.00 46.75 4.40
2018 2169 2.511373 GGCGATGCCGTCATGTGA 60.511 61.111 0.00 0.00 39.62 3.58
2019 2170 2.106074 GGCGATGCCGTCATGTGAA 61.106 57.895 0.00 0.00 39.62 3.18
2020 2171 1.060937 GCGATGCCGTCATGTGAAC 59.939 57.895 0.00 0.00 38.24 3.18
2021 2172 1.361668 GCGATGCCGTCATGTGAACT 61.362 55.000 0.00 0.00 38.24 3.01
2024 2175 2.735444 CGATGCCGTCATGTGAACTACT 60.735 50.000 0.00 0.00 31.96 2.57
2026 2177 3.945981 TGCCGTCATGTGAACTACTAA 57.054 42.857 0.00 0.00 0.00 2.24
2030 2181 4.267928 GCCGTCATGTGAACTACTAATCAC 59.732 45.833 0.00 0.00 44.84 3.06
2031 2182 4.499399 CCGTCATGTGAACTACTAATCACG 59.501 45.833 0.00 0.00 46.99 4.35
2032 2183 5.093457 CGTCATGTGAACTACTAATCACGT 58.907 41.667 0.00 0.00 46.99 4.49
2035 2186 5.798434 TCATGTGAACTACTAATCACGTTCG 59.202 40.000 0.00 0.00 46.99 3.95
2040 2264 5.643348 TGAACTACTAATCACGTTCGACCTA 59.357 40.000 0.00 0.00 38.78 3.08
2082 2307 3.919804 CCGATTGTTTTGTGATTCGCAAT 59.080 39.130 13.07 0.00 33.78 3.56
2084 2309 4.631036 GATTGTTTTGTGATTCGCAATGC 58.369 39.130 13.07 9.59 33.78 3.56
2095 2320 1.063006 CGCAATGCAGTTGGATCCG 59.937 57.895 7.39 0.00 38.29 4.18
2116 2341 3.370276 GACGCGAGGGAATAGTAACTTC 58.630 50.000 15.93 0.00 0.00 3.01
2135 2360 4.748102 ACTTCTAATCGTTGAAACTTGCGA 59.252 37.500 0.00 0.00 37.76 5.10
2136 2361 5.235616 ACTTCTAATCGTTGAAACTTGCGAA 59.764 36.000 0.00 0.00 36.92 4.70
2152 2377 3.580658 GAATTTTTCGGTCGCTCGG 57.419 52.632 0.00 0.00 0.00 4.63
2170 2395 4.172505 CTCGGACAAGATTCAGAGTTGAG 58.827 47.826 0.00 0.00 34.26 3.02
2211 2436 8.715191 TTTATGCAAAAGTTGTGATTTTGTCT 57.285 26.923 11.49 3.98 45.27 3.41
2238 2463 7.936584 TCACTCATACCAAGTTTAAAAGGTTG 58.063 34.615 11.96 6.44 35.62 3.77
2311 2539 0.871722 TTTGAAAGCCATCGTCACGG 59.128 50.000 0.00 0.00 0.00 4.94
2316 2544 0.872388 AAGCCATCGTCACGGAAAAC 59.128 50.000 0.00 0.00 0.00 2.43
2317 2545 0.250124 AGCCATCGTCACGGAAAACA 60.250 50.000 0.00 0.00 0.00 2.83
2318 2546 0.802494 GCCATCGTCACGGAAAACAT 59.198 50.000 0.00 0.00 0.00 2.71
2319 2547 1.465689 GCCATCGTCACGGAAAACATG 60.466 52.381 0.00 0.00 0.00 3.21
2320 2548 2.073056 CCATCGTCACGGAAAACATGA 58.927 47.619 0.00 0.00 0.00 3.07
2322 2550 3.126858 CCATCGTCACGGAAAACATGAAT 59.873 43.478 0.00 0.00 0.00 2.57
2323 2551 3.804518 TCGTCACGGAAAACATGAATG 57.195 42.857 0.00 0.00 0.00 2.67
2385 2614 9.736023 AGTTATGAAATATCGAAAATGGAAAGC 57.264 29.630 0.00 0.00 0.00 3.51
2402 2632 0.249447 AGCCAAAAGAAAAGCACGCC 60.249 50.000 0.00 0.00 0.00 5.68
2440 2670 2.026014 CACCTGCGTGCCACAAAC 59.974 61.111 0.00 0.00 32.04 2.93
2449 2679 0.947244 GTGCCACAAACACTCTCTGG 59.053 55.000 0.00 0.00 35.12 3.86
2456 2686 1.068748 CAAACACTCTCTGGCATGTGC 60.069 52.381 0.00 0.00 41.14 4.57
2459 2689 1.625315 ACACTCTCTGGCATGTGCTTA 59.375 47.619 4.84 0.00 41.70 3.09
2470 2700 6.016860 TCTGGCATGTGCTTAATCATCATAAC 60.017 38.462 4.84 0.00 41.70 1.89
2474 2704 7.198390 GCATGTGCTTAATCATCATAACAACT 58.802 34.615 0.00 0.00 38.21 3.16
2476 2706 6.554419 TGTGCTTAATCATCATAACAACTGC 58.446 36.000 0.00 0.00 0.00 4.40
2521 2751 1.379527 CCTAAAAGGCCGACACATCC 58.620 55.000 0.00 0.00 0.00 3.51
2536 2766 0.327000 CATCCCCTCCACTTCCCTCT 60.327 60.000 0.00 0.00 0.00 3.69
2538 2768 1.229658 CCCCTCCACTTCCCTCTGT 60.230 63.158 0.00 0.00 0.00 3.41
2556 2786 3.109847 TGGCAACTTCCACTTCACC 57.890 52.632 0.00 0.00 37.61 4.02
2558 2788 1.771854 TGGCAACTTCCACTTCACCTA 59.228 47.619 0.00 0.00 37.61 3.08
2561 2791 3.559171 GGCAACTTCCACTTCACCTATCA 60.559 47.826 0.00 0.00 0.00 2.15
2571 2801 3.119316 ACTTCACCTATCAACTCTGCTCG 60.119 47.826 0.00 0.00 0.00 5.03
2581 2811 1.446792 CTCTGCTCGATGGCACGTT 60.447 57.895 8.80 0.00 37.29 3.99
2615 2845 1.511850 GCCAACATCAAGCAAAACCC 58.488 50.000 0.00 0.00 0.00 4.11
2630 2860 2.134789 AACCCCACTCATCAAGCATC 57.865 50.000 0.00 0.00 0.00 3.91
2633 2863 1.676746 CCCACTCATCAAGCATCAGG 58.323 55.000 0.00 0.00 0.00 3.86
2635 2865 2.562635 CCACTCATCAAGCATCAGGAG 58.437 52.381 0.00 0.00 0.00 3.69
2640 2870 3.109928 TCATCAAGCATCAGGAGAAGGA 58.890 45.455 0.00 0.00 0.00 3.36
2659 2889 3.333219 CAGGGGCAGGAGGAAGCA 61.333 66.667 0.00 0.00 0.00 3.91
2668 2898 2.158842 GCAGGAGGAAGCAGTGTATGAT 60.159 50.000 0.00 0.00 0.00 2.45
2672 2902 3.386078 GGAGGAAGCAGTGTATGATGAGA 59.614 47.826 0.00 0.00 0.00 3.27
2684 2914 4.777366 TGTATGATGAGAAAGAGTGGTGGA 59.223 41.667 0.00 0.00 0.00 4.02
2686 2916 3.242867 TGATGAGAAAGAGTGGTGGACT 58.757 45.455 0.00 0.00 37.76 3.85
2689 2919 3.242867 TGAGAAAGAGTGGTGGACTGAT 58.757 45.455 0.00 0.00 33.83 2.90
2693 2923 0.891373 AGAGTGGTGGACTGATCACG 59.109 55.000 0.00 0.00 33.83 4.35
2697 2927 2.125912 GTGGACTGATCACGCGCT 60.126 61.111 5.73 0.00 0.00 5.92
2736 2966 0.546747 AAGATGGACGTTGGGAGGGA 60.547 55.000 0.00 0.00 0.00 4.20
2762 2992 0.183971 TTTTGGGACCACACATCCGT 59.816 50.000 0.00 0.00 37.08 4.69
2778 3008 1.016627 CCGTTGTTGATGCCGATGAT 58.983 50.000 0.00 0.00 0.00 2.45
2788 3018 2.592574 CCGATGATGGCGCATGGT 60.593 61.111 10.83 0.00 0.00 3.55
2806 3036 2.125912 CGGAGTGAGACAAGGCCG 60.126 66.667 0.00 0.00 0.00 6.13
2807 3037 2.435059 GGAGTGAGACAAGGCCGC 60.435 66.667 0.00 0.00 0.00 6.53
2808 3038 2.435059 GAGTGAGACAAGGCCGCC 60.435 66.667 0.00 0.00 0.00 6.13
2809 3039 2.925170 AGTGAGACAAGGCCGCCT 60.925 61.111 5.94 5.94 33.87 5.52
2810 3040 2.032681 GTGAGACAAGGCCGCCTT 59.967 61.111 19.53 19.53 45.88 4.35
2821 3051 3.436924 CCGCCTTGGCCCGTTTAC 61.437 66.667 0.00 0.00 0.00 2.01
2822 3052 3.795342 CGCCTTGGCCCGTTTACG 61.795 66.667 0.00 0.00 39.44 3.18
2823 3053 4.111016 GCCTTGGCCCGTTTACGC 62.111 66.667 0.00 0.00 38.18 4.42
2824 3054 3.795342 CCTTGGCCCGTTTACGCG 61.795 66.667 3.53 3.53 38.18 6.01
2825 3055 3.045492 CTTGGCCCGTTTACGCGT 61.045 61.111 19.17 19.17 38.18 6.01
2826 3056 1.737371 CTTGGCCCGTTTACGCGTA 60.737 57.895 16.41 16.41 38.18 4.42
2827 3057 1.290491 CTTGGCCCGTTTACGCGTAA 61.290 55.000 26.87 26.87 38.18 3.18
2828 3058 0.673022 TTGGCCCGTTTACGCGTAAT 60.673 50.000 30.36 2.20 38.18 1.89
2829 3059 1.349282 GGCCCGTTTACGCGTAATG 59.651 57.895 30.36 24.07 38.18 1.90
2830 3060 1.349282 GCCCGTTTACGCGTAATGG 59.651 57.895 30.36 29.99 38.18 3.16
2831 3061 1.083242 GCCCGTTTACGCGTAATGGA 61.083 55.000 34.49 20.54 38.18 3.41
2832 3062 0.925466 CCCGTTTACGCGTAATGGAG 59.075 55.000 34.49 25.30 38.18 3.86
2833 3063 0.925466 CCGTTTACGCGTAATGGAGG 59.075 55.000 31.59 25.73 38.18 4.30
2834 3064 0.299597 CGTTTACGCGTAATGGAGGC 59.700 55.000 30.36 15.45 35.52 4.70
2835 3065 0.654160 GTTTACGCGTAATGGAGGCC 59.346 55.000 30.36 10.24 35.43 5.19
2836 3066 0.462403 TTTACGCGTAATGGAGGCCC 60.462 55.000 30.36 0.00 35.43 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 9.762933 ACTTGTGAGCATTTTTAAATGTAACAT 57.237 25.926 14.66 0.00 45.77 2.71
71 72 9.593134 AACTTGTGAGCATTTTTAAATGTAACA 57.407 25.926 14.66 13.08 45.77 2.41
81 82 8.337532 GCATTCTTAAAACTTGTGAGCATTTTT 58.662 29.630 0.00 0.00 0.00 1.94
82 83 7.306749 CGCATTCTTAAAACTTGTGAGCATTTT 60.307 33.333 0.00 0.00 0.00 1.82
83 84 6.144402 CGCATTCTTAAAACTTGTGAGCATTT 59.856 34.615 0.00 0.00 0.00 2.32
84 85 5.630680 CGCATTCTTAAAACTTGTGAGCATT 59.369 36.000 0.00 0.00 0.00 3.56
85 86 5.156355 CGCATTCTTAAAACTTGTGAGCAT 58.844 37.500 0.00 0.00 0.00 3.79
86 87 4.036262 ACGCATTCTTAAAACTTGTGAGCA 59.964 37.500 0.00 0.00 0.00 4.26
87 88 4.537015 ACGCATTCTTAAAACTTGTGAGC 58.463 39.130 0.00 0.00 0.00 4.26
88 89 5.336990 CGAACGCATTCTTAAAACTTGTGAG 59.663 40.000 0.00 0.00 32.12 3.51
89 90 5.201910 CGAACGCATTCTTAAAACTTGTGA 58.798 37.500 0.00 0.00 32.12 3.58
90 91 4.378616 CCGAACGCATTCTTAAAACTTGTG 59.621 41.667 0.00 0.00 32.12 3.33
91 92 4.273969 TCCGAACGCATTCTTAAAACTTGT 59.726 37.500 0.00 0.00 32.12 3.16
92 93 4.611366 GTCCGAACGCATTCTTAAAACTTG 59.389 41.667 0.00 0.00 32.12 3.16
93 94 4.273969 TGTCCGAACGCATTCTTAAAACTT 59.726 37.500 0.00 0.00 32.12 2.66
94 95 3.810941 TGTCCGAACGCATTCTTAAAACT 59.189 39.130 0.00 0.00 32.12 2.66
95 96 4.136517 TGTCCGAACGCATTCTTAAAAC 57.863 40.909 0.00 0.00 32.12 2.43
96 97 5.365403 AATGTCCGAACGCATTCTTAAAA 57.635 34.783 0.00 0.00 30.33 1.52
97 98 6.483385 TTAATGTCCGAACGCATTCTTAAA 57.517 33.333 0.00 0.00 36.75 1.52
98 99 6.483385 TTTAATGTCCGAACGCATTCTTAA 57.517 33.333 0.00 0.00 36.75 1.85
99 100 6.483385 TTTTAATGTCCGAACGCATTCTTA 57.517 33.333 0.00 0.00 36.75 2.10
100 101 5.365403 TTTTAATGTCCGAACGCATTCTT 57.635 34.783 0.00 0.00 36.75 2.52
101 102 5.365403 TTTTTAATGTCCGAACGCATTCT 57.635 34.783 0.00 0.00 36.75 2.40
122 123 7.836842 ACCTTTTCTGAATGTGTACAGTTTTT 58.163 30.769 0.00 0.00 35.84 1.94
123 124 7.404671 ACCTTTTCTGAATGTGTACAGTTTT 57.595 32.000 0.00 0.00 35.84 2.43
124 125 7.257722 CAACCTTTTCTGAATGTGTACAGTTT 58.742 34.615 0.00 0.00 35.84 2.66
125 126 6.680378 GCAACCTTTTCTGAATGTGTACAGTT 60.680 38.462 0.00 0.00 35.84 3.16
126 127 5.221048 GCAACCTTTTCTGAATGTGTACAGT 60.221 40.000 0.00 0.00 35.84 3.55
127 128 5.215160 GCAACCTTTTCTGAATGTGTACAG 58.785 41.667 0.00 0.00 35.72 2.74
128 129 4.642437 TGCAACCTTTTCTGAATGTGTACA 59.358 37.500 0.00 0.00 0.00 2.90
129 130 5.181690 TGCAACCTTTTCTGAATGTGTAC 57.818 39.130 0.00 0.00 0.00 2.90
130 131 6.714810 ACTATGCAACCTTTTCTGAATGTGTA 59.285 34.615 0.00 0.00 0.00 2.90
131 132 4.942761 ATGCAACCTTTTCTGAATGTGT 57.057 36.364 0.00 0.00 0.00 3.72
132 133 6.017400 ACTATGCAACCTTTTCTGAATGTG 57.983 37.500 0.00 0.00 0.00 3.21
133 134 6.265196 TGAACTATGCAACCTTTTCTGAATGT 59.735 34.615 0.00 0.00 0.00 2.71
134 135 6.680810 TGAACTATGCAACCTTTTCTGAATG 58.319 36.000 0.00 0.00 0.00 2.67
135 136 6.716628 TCTGAACTATGCAACCTTTTCTGAAT 59.283 34.615 0.00 0.00 0.00 2.57
136 137 6.061441 TCTGAACTATGCAACCTTTTCTGAA 58.939 36.000 0.00 0.00 0.00 3.02
137 138 5.620206 TCTGAACTATGCAACCTTTTCTGA 58.380 37.500 0.00 0.00 0.00 3.27
138 139 5.947228 TCTGAACTATGCAACCTTTTCTG 57.053 39.130 0.00 0.00 0.00 3.02
139 140 6.959639 TTTCTGAACTATGCAACCTTTTCT 57.040 33.333 0.00 0.00 0.00 2.52
140 141 9.691362 TTATTTTCTGAACTATGCAACCTTTTC 57.309 29.630 0.00 0.00 0.00 2.29
180 181 9.959749 ACGTTCTTTCAAATACATGTTAACATT 57.040 25.926 18.50 12.21 33.61 2.71
181 182 9.959749 AACGTTCTTTCAAATACATGTTAACAT 57.040 25.926 15.47 15.47 36.96 2.71
182 183 9.440784 GAACGTTCTTTCAAATACATGTTAACA 57.559 29.630 20.97 11.41 0.00 2.41
183 184 9.440784 TGAACGTTCTTTCAAATACATGTTAAC 57.559 29.630 27.32 0.00 32.42 2.01
186 187 8.918961 TTTGAACGTTCTTTCAAATACATGTT 57.081 26.923 27.32 0.00 45.99 2.71
195 196 8.918961 AATACATGTTTTGAACGTTCTTTCAA 57.081 26.923 27.32 12.72 42.47 2.69
196 197 9.440784 GTAATACATGTTTTGAACGTTCTTTCA 57.559 29.630 27.32 19.78 33.55 2.69
197 198 9.440784 TGTAATACATGTTTTGAACGTTCTTTC 57.559 29.630 27.32 15.53 0.00 2.62
198 199 9.790389 TTGTAATACATGTTTTGAACGTTCTTT 57.210 25.926 27.32 3.59 0.00 2.52
199 200 9.790389 TTTGTAATACATGTTTTGAACGTTCTT 57.210 25.926 27.32 12.50 0.00 2.52
200 201 9.790389 TTTTGTAATACATGTTTTGAACGTTCT 57.210 25.926 27.32 8.59 0.00 3.01
204 205 9.300441 GCATTTTTGTAATACATGTTTTGAACG 57.700 29.630 2.30 0.00 0.00 3.95
205 206 9.300441 CGCATTTTTGTAATACATGTTTTGAAC 57.700 29.630 2.30 0.00 0.00 3.18
206 207 9.249457 TCGCATTTTTGTAATACATGTTTTGAA 57.751 25.926 2.30 0.00 0.00 2.69
207 208 8.803201 TCGCATTTTTGTAATACATGTTTTGA 57.197 26.923 2.30 0.00 0.00 2.69
253 254 9.844790 CATGTTACACATTTTTCATGTACATCT 57.155 29.630 5.07 0.00 36.53 2.90
254 255 9.624697 ACATGTTACACATTTTTCATGTACATC 57.375 29.630 5.07 0.00 42.21 3.06
259 260 9.809096 TTTGTACATGTTACACATTTTTCATGT 57.191 25.926 2.30 12.06 44.73 3.21
309 310 9.973450 TCAAAAGATGATTAACATTTTTCCGAA 57.027 25.926 0.00 0.00 40.69 4.30
310 311 9.973450 TTCAAAAGATGATTAACATTTTTCCGA 57.027 25.926 0.00 0.00 40.69 4.55
355 356 7.716799 TGGATTGTACATAAGGAGCATTTTT 57.283 32.000 0.00 0.00 0.00 1.94
356 357 7.902920 ATGGATTGTACATAAGGAGCATTTT 57.097 32.000 0.00 0.00 0.00 1.82
357 358 9.017509 CATATGGATTGTACATAAGGAGCATTT 57.982 33.333 0.00 0.00 34.75 2.32
358 359 8.385491 TCATATGGATTGTACATAAGGAGCATT 58.615 33.333 2.13 0.00 34.75 3.56
359 360 7.921304 TCATATGGATTGTACATAAGGAGCAT 58.079 34.615 2.13 0.00 34.75 3.79
360 361 7.315066 TCATATGGATTGTACATAAGGAGCA 57.685 36.000 2.13 0.00 34.75 4.26
361 362 8.621532 TTTCATATGGATTGTACATAAGGAGC 57.378 34.615 2.13 0.00 34.75 4.70
375 376 9.412460 ACACATGTCTACATTTTTCATATGGAT 57.588 29.630 2.13 0.00 33.61 3.41
376 377 8.806429 ACACATGTCTACATTTTTCATATGGA 57.194 30.769 2.13 0.00 33.61 3.41
377 378 9.292846 CAACACATGTCTACATTTTTCATATGG 57.707 33.333 2.13 0.00 33.61 2.74
381 382 9.814899 TTTTCAACACATGTCTACATTTTTCAT 57.185 25.926 0.00 0.00 33.61 2.57
382 383 9.645059 TTTTTCAACACATGTCTACATTTTTCA 57.355 25.926 0.00 0.00 33.61 2.69
405 406 5.845391 TTTCTGATTGTCTTCGGGTTTTT 57.155 34.783 0.00 0.00 0.00 1.94
406 407 5.845391 TTTTCTGATTGTCTTCGGGTTTT 57.155 34.783 0.00 0.00 0.00 2.43
407 408 5.221244 CCTTTTTCTGATTGTCTTCGGGTTT 60.221 40.000 0.00 0.00 0.00 3.27
408 409 4.278419 CCTTTTTCTGATTGTCTTCGGGTT 59.722 41.667 0.00 0.00 0.00 4.11
409 410 3.821033 CCTTTTTCTGATTGTCTTCGGGT 59.179 43.478 0.00 0.00 0.00 5.28
410 411 3.821033 ACCTTTTTCTGATTGTCTTCGGG 59.179 43.478 0.00 0.00 0.00 5.14
411 412 4.515191 TCACCTTTTTCTGATTGTCTTCGG 59.485 41.667 0.00 0.00 0.00 4.30
412 413 5.673337 TCACCTTTTTCTGATTGTCTTCG 57.327 39.130 0.00 0.00 0.00 3.79
413 414 7.759433 TGTTTTCACCTTTTTCTGATTGTCTTC 59.241 33.333 0.00 0.00 0.00 2.87
414 415 7.610865 TGTTTTCACCTTTTTCTGATTGTCTT 58.389 30.769 0.00 0.00 0.00 3.01
415 416 7.169158 TGTTTTCACCTTTTTCTGATTGTCT 57.831 32.000 0.00 0.00 0.00 3.41
416 417 7.826260 TTGTTTTCACCTTTTTCTGATTGTC 57.174 32.000 0.00 0.00 0.00 3.18
417 418 8.040132 TCATTGTTTTCACCTTTTTCTGATTGT 58.960 29.630 0.00 0.00 0.00 2.71
418 419 8.422973 TCATTGTTTTCACCTTTTTCTGATTG 57.577 30.769 0.00 0.00 0.00 2.67
419 420 9.447157 TTTCATTGTTTTCACCTTTTTCTGATT 57.553 25.926 0.00 0.00 0.00 2.57
420 421 9.101655 CTTTCATTGTTTTCACCTTTTTCTGAT 57.898 29.630 0.00 0.00 0.00 2.90
421 422 8.310382 TCTTTCATTGTTTTCACCTTTTTCTGA 58.690 29.630 0.00 0.00 0.00 3.27
422 423 8.477984 TCTTTCATTGTTTTCACCTTTTTCTG 57.522 30.769 0.00 0.00 0.00 3.02
423 424 9.500785 TTTCTTTCATTGTTTTCACCTTTTTCT 57.499 25.926 0.00 0.00 0.00 2.52
424 425 9.541724 GTTTCTTTCATTGTTTTCACCTTTTTC 57.458 29.630 0.00 0.00 0.00 2.29
425 426 9.061435 TGTTTCTTTCATTGTTTTCACCTTTTT 57.939 25.926 0.00 0.00 0.00 1.94
426 427 8.614469 TGTTTCTTTCATTGTTTTCACCTTTT 57.386 26.923 0.00 0.00 0.00 2.27
427 428 8.614469 TTGTTTCTTTCATTGTTTTCACCTTT 57.386 26.923 0.00 0.00 0.00 3.11
428 429 8.614469 TTTGTTTCTTTCATTGTTTTCACCTT 57.386 26.923 0.00 0.00 0.00 3.50
429 430 8.093927 TCTTTGTTTCTTTCATTGTTTTCACCT 58.906 29.630 0.00 0.00 0.00 4.00
430 431 8.250538 TCTTTGTTTCTTTCATTGTTTTCACC 57.749 30.769 0.00 0.00 0.00 4.02
554 555 7.493320 GGACGGTTCCTGTTTTTATTTCTTTTT 59.507 33.333 0.00 0.00 39.13 1.94
555 556 6.982141 GGACGGTTCCTGTTTTTATTTCTTTT 59.018 34.615 0.00 0.00 39.13 2.27
556 557 6.509656 GGACGGTTCCTGTTTTTATTTCTTT 58.490 36.000 0.00 0.00 39.13 2.52
557 558 5.278120 CGGACGGTTCCTGTTTTTATTTCTT 60.278 40.000 0.00 0.00 40.23 2.52
558 559 4.214758 CGGACGGTTCCTGTTTTTATTTCT 59.785 41.667 0.00 0.00 40.23 2.52
559 560 4.213906 TCGGACGGTTCCTGTTTTTATTTC 59.786 41.667 0.00 0.00 40.23 2.17
560 561 4.136051 TCGGACGGTTCCTGTTTTTATTT 58.864 39.130 0.00 0.00 40.23 1.40
561 562 3.742385 TCGGACGGTTCCTGTTTTTATT 58.258 40.909 0.00 0.00 40.23 1.40
562 563 3.405823 TCGGACGGTTCCTGTTTTTAT 57.594 42.857 0.00 0.00 40.23 1.40
563 564 2.906691 TCGGACGGTTCCTGTTTTTA 57.093 45.000 0.00 0.00 40.23 1.52
564 565 1.944709 CTTCGGACGGTTCCTGTTTTT 59.055 47.619 0.00 0.00 40.23 1.94
565 566 1.589803 CTTCGGACGGTTCCTGTTTT 58.410 50.000 0.00 0.00 40.23 2.43
566 567 0.883370 GCTTCGGACGGTTCCTGTTT 60.883 55.000 0.00 0.00 40.23 2.83
567 568 1.301479 GCTTCGGACGGTTCCTGTT 60.301 57.895 0.00 0.00 40.23 3.16
568 569 2.342648 GCTTCGGACGGTTCCTGT 59.657 61.111 0.00 0.00 40.23 4.00
569 570 2.758770 TTCGCTTCGGACGGTTCCTG 62.759 60.000 0.00 0.00 40.23 3.86
570 571 2.567497 TTCGCTTCGGACGGTTCCT 61.567 57.895 0.00 0.00 40.23 3.36
571 572 2.048877 TTCGCTTCGGACGGTTCC 60.049 61.111 0.00 0.00 38.77 3.62
572 573 1.372623 AGTTCGCTTCGGACGGTTC 60.373 57.895 0.00 0.00 40.73 3.62
573 574 1.663702 CAGTTCGCTTCGGACGGTT 60.664 57.895 0.00 0.00 40.73 4.44
574 575 1.518056 TACAGTTCGCTTCGGACGGT 61.518 55.000 8.34 8.34 44.82 4.83
575 576 0.797249 CTACAGTTCGCTTCGGACGG 60.797 60.000 0.00 0.00 40.73 4.79
576 577 1.403972 GCTACAGTTCGCTTCGGACG 61.404 60.000 0.00 0.00 40.73 4.79
577 578 1.077089 GGCTACAGTTCGCTTCGGAC 61.077 60.000 0.00 0.00 35.29 4.79
578 579 1.214589 GGCTACAGTTCGCTTCGGA 59.785 57.895 0.00 0.00 0.00 4.55
579 580 1.810030 GGGCTACAGTTCGCTTCGG 60.810 63.158 0.00 0.00 0.00 4.30
580 581 0.460284 ATGGGCTACAGTTCGCTTCG 60.460 55.000 0.00 0.00 0.00 3.79
581 582 1.739067 AATGGGCTACAGTTCGCTTC 58.261 50.000 0.00 0.00 0.00 3.86
582 583 2.629051 GTAATGGGCTACAGTTCGCTT 58.371 47.619 0.00 0.00 0.00 4.68
583 584 1.470979 CGTAATGGGCTACAGTTCGCT 60.471 52.381 0.00 0.00 31.77 4.93
584 585 0.928229 CGTAATGGGCTACAGTTCGC 59.072 55.000 0.00 0.00 31.77 4.70
585 586 0.928229 GCGTAATGGGCTACAGTTCG 59.072 55.000 4.68 4.68 40.21 3.95
586 587 2.202566 GAGCGTAATGGGCTACAGTTC 58.797 52.381 0.00 0.00 41.72 3.01
587 588 1.470979 CGAGCGTAATGGGCTACAGTT 60.471 52.381 0.00 0.00 41.72 3.16
588 589 0.102481 CGAGCGTAATGGGCTACAGT 59.898 55.000 0.00 0.00 41.72 3.55
589 590 0.384309 TCGAGCGTAATGGGCTACAG 59.616 55.000 0.00 0.00 41.72 2.74
590 591 0.818938 TTCGAGCGTAATGGGCTACA 59.181 50.000 0.00 0.00 41.72 2.74
591 592 1.206523 GTTCGAGCGTAATGGGCTAC 58.793 55.000 0.00 0.00 41.72 3.58
592 593 0.248743 CGTTCGAGCGTAATGGGCTA 60.249 55.000 13.95 0.00 41.72 3.93
593 594 1.518572 CGTTCGAGCGTAATGGGCT 60.519 57.895 13.95 0.00 45.00 5.19
594 595 3.003478 CGTTCGAGCGTAATGGGC 58.997 61.111 13.95 0.00 0.00 5.36
595 596 1.807981 TGCGTTCGAGCGTAATGGG 60.808 57.895 22.62 0.00 40.67 4.00
596 597 1.343821 GTGCGTTCGAGCGTAATGG 59.656 57.895 22.62 0.00 40.67 3.16
597 598 1.014825 CGTGCGTTCGAGCGTAATG 60.015 57.895 22.62 12.84 40.67 1.90
598 599 0.730155 TTCGTGCGTTCGAGCGTAAT 60.730 50.000 22.62 0.00 40.86 1.89
599 600 0.933973 TTTCGTGCGTTCGAGCGTAA 60.934 50.000 22.62 9.17 40.86 3.18
600 601 0.933973 TTTTCGTGCGTTCGAGCGTA 60.934 50.000 22.62 16.18 40.86 4.42
601 602 1.554042 ATTTTCGTGCGTTCGAGCGT 61.554 50.000 22.62 0.00 40.86 5.07
602 603 1.114515 CATTTTCGTGCGTTCGAGCG 61.115 55.000 17.91 17.91 40.86 5.03
603 604 0.789383 CCATTTTCGTGCGTTCGAGC 60.789 55.000 0.00 0.00 40.86 5.03
604 605 0.179225 CCCATTTTCGTGCGTTCGAG 60.179 55.000 0.00 0.00 40.86 4.04
605 606 1.863491 CCCATTTTCGTGCGTTCGA 59.137 52.632 0.00 0.51 38.08 3.71
606 607 1.795962 GCCCATTTTCGTGCGTTCG 60.796 57.895 0.00 0.00 0.00 3.95
607 608 0.729140 CAGCCCATTTTCGTGCGTTC 60.729 55.000 0.00 0.00 0.00 3.95
608 609 1.285641 CAGCCCATTTTCGTGCGTT 59.714 52.632 0.00 0.00 0.00 4.84
609 610 2.625823 CCAGCCCATTTTCGTGCGT 61.626 57.895 0.00 0.00 0.00 5.24
610 611 2.179018 CCAGCCCATTTTCGTGCG 59.821 61.111 0.00 0.00 0.00 5.34
611 612 2.125952 GCCAGCCCATTTTCGTGC 60.126 61.111 0.00 0.00 0.00 5.34
612 613 2.573340 GGCCAGCCCATTTTCGTG 59.427 61.111 0.00 0.00 0.00 4.35
613 614 3.061848 CGGCCAGCCCATTTTCGT 61.062 61.111 2.24 0.00 0.00 3.85
614 615 3.825611 CCGGCCAGCCCATTTTCG 61.826 66.667 2.24 0.00 0.00 3.46
615 616 1.379309 TACCGGCCAGCCCATTTTC 60.379 57.895 0.00 0.00 0.00 2.29
616 617 1.680989 GTACCGGCCAGCCCATTTT 60.681 57.895 0.00 0.00 0.00 1.82
617 618 2.044352 GTACCGGCCAGCCCATTT 60.044 61.111 0.00 0.00 0.00 2.32
618 619 2.612493 AAGTACCGGCCAGCCCATT 61.612 57.895 0.00 0.00 0.00 3.16
619 620 3.015145 AAGTACCGGCCAGCCCAT 61.015 61.111 0.00 0.00 0.00 4.00
620 621 4.028490 CAAGTACCGGCCAGCCCA 62.028 66.667 0.00 0.00 0.00 5.36
621 622 2.588856 CTACAAGTACCGGCCAGCCC 62.589 65.000 0.00 0.00 0.00 5.19
622 623 1.153429 CTACAAGTACCGGCCAGCC 60.153 63.158 0.00 0.00 0.00 4.85
623 624 1.814169 GCTACAAGTACCGGCCAGC 60.814 63.158 0.00 0.00 0.00 4.85
624 625 0.739813 GTGCTACAAGTACCGGCCAG 60.740 60.000 0.00 0.00 0.00 4.85
625 626 1.294138 GTGCTACAAGTACCGGCCA 59.706 57.895 0.00 0.00 0.00 5.36
626 627 1.449070 GGTGCTACAAGTACCGGCC 60.449 63.158 0.00 0.00 41.04 6.13
627 628 4.196965 GGTGCTACAAGTACCGGC 57.803 61.111 0.00 0.00 41.04 6.13
631 632 2.734492 CGCCTGTAGGTGCTACAAGTAC 60.734 54.545 0.00 0.00 44.80 2.73
632 633 1.475280 CGCCTGTAGGTGCTACAAGTA 59.525 52.381 0.00 0.00 44.80 2.24
633 634 0.246635 CGCCTGTAGGTGCTACAAGT 59.753 55.000 0.00 0.00 44.80 3.16
634 635 0.530744 TCGCCTGTAGGTGCTACAAG 59.469 55.000 6.60 0.00 44.80 3.16
635 636 1.134818 CATCGCCTGTAGGTGCTACAA 60.135 52.381 6.60 0.00 44.80 2.41
636 637 0.459899 CATCGCCTGTAGGTGCTACA 59.540 55.000 6.60 0.00 43.56 2.74
637 638 0.876342 GCATCGCCTGTAGGTGCTAC 60.876 60.000 6.60 0.00 45.04 3.58
638 639 1.441729 GCATCGCCTGTAGGTGCTA 59.558 57.895 6.60 0.00 45.04 3.49
639 640 2.187946 GCATCGCCTGTAGGTGCT 59.812 61.111 6.60 0.00 45.04 4.40
640 641 2.897350 GGCATCGCCTGTAGGTGC 60.897 66.667 6.60 5.18 46.69 5.01
650 651 7.010552 CCATACTTGAGTTATAATAGGCATCGC 59.989 40.741 0.00 0.00 0.00 4.58
651 652 7.492669 CCCATACTTGAGTTATAATAGGCATCG 59.507 40.741 0.00 0.00 0.00 3.84
652 653 7.281100 GCCCATACTTGAGTTATAATAGGCATC 59.719 40.741 0.00 0.00 34.32 3.91
653 654 7.112779 GCCCATACTTGAGTTATAATAGGCAT 58.887 38.462 0.00 0.00 34.32 4.40
654 655 6.472887 GCCCATACTTGAGTTATAATAGGCA 58.527 40.000 0.00 0.00 34.32 4.75
655 656 5.581085 CGCCCATACTTGAGTTATAATAGGC 59.419 44.000 0.00 0.00 0.00 3.93
656 657 6.931838 TCGCCCATACTTGAGTTATAATAGG 58.068 40.000 0.00 0.00 0.00 2.57
657 658 9.737427 CTATCGCCCATACTTGAGTTATAATAG 57.263 37.037 0.00 0.00 0.00 1.73
658 659 9.470399 TCTATCGCCCATACTTGAGTTATAATA 57.530 33.333 0.00 0.00 0.00 0.98
659 660 8.362464 TCTATCGCCCATACTTGAGTTATAAT 57.638 34.615 0.00 0.00 0.00 1.28
660 661 7.770366 TCTATCGCCCATACTTGAGTTATAA 57.230 36.000 0.00 0.00 0.00 0.98
661 662 7.956328 ATCTATCGCCCATACTTGAGTTATA 57.044 36.000 0.00 0.00 0.00 0.98
662 663 6.859112 ATCTATCGCCCATACTTGAGTTAT 57.141 37.500 0.00 0.00 0.00 1.89
663 664 6.455647 CAATCTATCGCCCATACTTGAGTTA 58.544 40.000 0.00 0.00 0.00 2.24
664 665 5.300752 CAATCTATCGCCCATACTTGAGTT 58.699 41.667 0.00 0.00 0.00 3.01
665 666 4.800914 GCAATCTATCGCCCATACTTGAGT 60.801 45.833 0.00 0.00 0.00 3.41
666 667 3.681897 GCAATCTATCGCCCATACTTGAG 59.318 47.826 0.00 0.00 0.00 3.02
667 668 3.070878 TGCAATCTATCGCCCATACTTGA 59.929 43.478 0.00 0.00 0.00 3.02
668 669 3.402110 TGCAATCTATCGCCCATACTTG 58.598 45.455 0.00 0.00 0.00 3.16
669 670 3.769739 TGCAATCTATCGCCCATACTT 57.230 42.857 0.00 0.00 0.00 2.24
670 671 3.988976 ATGCAATCTATCGCCCATACT 57.011 42.857 0.00 0.00 0.00 2.12
671 672 4.726416 CAAATGCAATCTATCGCCCATAC 58.274 43.478 0.00 0.00 0.00 2.39
672 673 3.191162 GCAAATGCAATCTATCGCCCATA 59.809 43.478 0.00 0.00 41.59 2.74
673 674 2.029649 GCAAATGCAATCTATCGCCCAT 60.030 45.455 0.00 0.00 41.59 4.00
674 675 1.337703 GCAAATGCAATCTATCGCCCA 59.662 47.619 0.00 0.00 41.59 5.36
675 676 1.664016 CGCAAATGCAATCTATCGCCC 60.664 52.381 6.18 0.00 42.21 6.13
676 677 1.678360 CGCAAATGCAATCTATCGCC 58.322 50.000 6.18 0.00 42.21 5.54
677 678 1.047739 GCGCAAATGCAATCTATCGC 58.952 50.000 0.30 0.00 42.21 4.58
678 679 1.265095 AGGCGCAAATGCAATCTATCG 59.735 47.619 10.83 0.00 42.21 2.92
679 680 3.047796 CAAGGCGCAAATGCAATCTATC 58.952 45.455 10.83 0.00 42.21 2.08
680 681 2.223876 CCAAGGCGCAAATGCAATCTAT 60.224 45.455 10.83 0.00 42.21 1.98
681 682 1.134753 CCAAGGCGCAAATGCAATCTA 59.865 47.619 10.83 0.00 42.21 1.98
682 683 0.108520 CCAAGGCGCAAATGCAATCT 60.109 50.000 10.83 0.00 42.21 2.40
683 684 0.108709 TCCAAGGCGCAAATGCAATC 60.109 50.000 10.83 0.00 42.21 2.67
684 685 0.538118 ATCCAAGGCGCAAATGCAAT 59.462 45.000 10.83 0.00 42.21 3.56
685 686 0.108709 GATCCAAGGCGCAAATGCAA 60.109 50.000 10.83 0.00 42.21 4.08
686 687 1.249469 TGATCCAAGGCGCAAATGCA 61.249 50.000 10.83 0.00 42.21 3.96
687 688 0.803380 GTGATCCAAGGCGCAAATGC 60.803 55.000 10.83 0.00 37.78 3.56
688 689 0.523968 CGTGATCCAAGGCGCAAATG 60.524 55.000 10.83 4.33 0.00 2.32
689 690 0.960364 ACGTGATCCAAGGCGCAAAT 60.960 50.000 10.83 0.00 0.00 2.32
690 691 1.599518 ACGTGATCCAAGGCGCAAA 60.600 52.632 10.83 0.00 0.00 3.68
691 692 2.031919 ACGTGATCCAAGGCGCAA 59.968 55.556 10.83 0.00 0.00 4.85
692 693 2.741985 CACGTGATCCAAGGCGCA 60.742 61.111 10.90 0.00 0.00 6.09
693 694 3.499737 CCACGTGATCCAAGGCGC 61.500 66.667 19.30 0.00 0.00 6.53
694 695 2.100631 GTCCACGTGATCCAAGGCG 61.101 63.158 19.30 0.00 0.00 5.52
695 696 0.741221 GAGTCCACGTGATCCAAGGC 60.741 60.000 19.30 0.00 0.00 4.35
696 697 0.108138 GGAGTCCACGTGATCCAAGG 60.108 60.000 19.30 0.00 0.00 3.61
697 698 0.608130 TGGAGTCCACGTGATCCAAG 59.392 55.000 25.39 7.59 38.86 3.61
698 699 0.320374 GTGGAGTCCACGTGATCCAA 59.680 55.000 27.70 15.58 44.95 3.53
699 700 1.972198 GTGGAGTCCACGTGATCCA 59.028 57.895 26.12 24.41 44.95 3.41
700 701 4.913126 GTGGAGTCCACGTGATCC 57.087 61.111 26.12 20.31 44.95 3.36
711 712 0.250338 GGCTTCTTTGGACGTGGAGT 60.250 55.000 0.00 0.00 0.00 3.85
712 713 0.035458 AGGCTTCTTTGGACGTGGAG 59.965 55.000 0.00 0.00 0.00 3.86
713 714 0.250295 CAGGCTTCTTTGGACGTGGA 60.250 55.000 0.00 0.00 0.00 4.02
714 715 1.237285 CCAGGCTTCTTTGGACGTGG 61.237 60.000 0.00 0.00 36.55 4.94
715 716 0.250295 TCCAGGCTTCTTTGGACGTG 60.250 55.000 0.00 0.00 38.53 4.49
716 717 0.035458 CTCCAGGCTTCTTTGGACGT 59.965 55.000 0.00 0.00 38.53 4.34
717 718 0.321671 TCTCCAGGCTTCTTTGGACG 59.678 55.000 0.00 0.00 38.53 4.79
718 719 1.814793 GTCTCCAGGCTTCTTTGGAC 58.185 55.000 0.00 0.00 38.53 4.02
719 720 0.321671 CGTCTCCAGGCTTCTTTGGA 59.678 55.000 0.00 0.00 41.06 3.53
720 721 0.674895 CCGTCTCCAGGCTTCTTTGG 60.675 60.000 0.00 0.00 35.74 3.28
721 722 0.321671 TCCGTCTCCAGGCTTCTTTG 59.678 55.000 0.00 0.00 0.00 2.77
722 723 1.056660 TTCCGTCTCCAGGCTTCTTT 58.943 50.000 0.00 0.00 0.00 2.52
723 724 0.321996 GTTCCGTCTCCAGGCTTCTT 59.678 55.000 0.00 0.00 0.00 2.52
724 725 1.878656 CGTTCCGTCTCCAGGCTTCT 61.879 60.000 0.00 0.00 0.00 2.85
725 726 1.446272 CGTTCCGTCTCCAGGCTTC 60.446 63.158 0.00 0.00 0.00 3.86
726 727 1.906824 TCGTTCCGTCTCCAGGCTT 60.907 57.895 0.00 0.00 0.00 4.35
727 728 2.282958 TCGTTCCGTCTCCAGGCT 60.283 61.111 0.00 0.00 0.00 4.58
728 729 2.126031 GTCGTTCCGTCTCCAGGC 60.126 66.667 0.00 0.00 0.00 4.85
729 730 2.178521 CGTCGTTCCGTCTCCAGG 59.821 66.667 0.00 0.00 0.00 4.45
730 731 2.952245 ACGTCGTTCCGTCTCCAG 59.048 61.111 0.00 0.00 35.95 3.86
736 737 3.982241 GGTGGGACGTCGTTCCGT 61.982 66.667 17.94 0.00 45.18 4.69
737 738 4.729856 GGGTGGGACGTCGTTCCG 62.730 72.222 17.94 0.00 32.85 4.30
738 739 4.729856 CGGGTGGGACGTCGTTCC 62.730 72.222 16.37 16.37 34.52 3.62
739 740 3.673484 TCGGGTGGGACGTCGTTC 61.673 66.667 9.92 0.00 0.00 3.95
740 741 3.982241 GTCGGGTGGGACGTCGTT 61.982 66.667 9.92 0.00 0.00 3.85
750 751 2.677524 TACCTGGGTCGTCGGGTG 60.678 66.667 13.92 0.00 45.36 4.61
752 753 3.455469 GGTACCTGGGTCGTCGGG 61.455 72.222 4.06 0.00 39.08 5.14
753 754 1.818959 TTTGGTACCTGGGTCGTCGG 61.819 60.000 14.36 0.00 0.00 4.79
754 755 0.668401 GTTTGGTACCTGGGTCGTCG 60.668 60.000 14.36 0.00 0.00 5.12
755 756 0.321034 GGTTTGGTACCTGGGTCGTC 60.321 60.000 14.36 0.00 44.10 4.20
756 757 1.756665 GGTTTGGTACCTGGGTCGT 59.243 57.895 14.36 0.00 44.10 4.34
757 758 1.375013 CGGTTTGGTACCTGGGTCG 60.375 63.158 14.36 7.11 45.40 4.79
758 759 0.604511 CACGGTTTGGTACCTGGGTC 60.605 60.000 14.36 0.00 45.40 4.46
759 760 1.452801 CACGGTTTGGTACCTGGGT 59.547 57.895 14.36 1.25 45.40 4.51
760 761 1.969589 GCACGGTTTGGTACCTGGG 60.970 63.158 14.36 0.07 45.40 4.45
761 762 1.969589 GGCACGGTTTGGTACCTGG 60.970 63.158 14.36 0.00 45.40 4.45
762 763 3.663202 GGCACGGTTTGGTACCTG 58.337 61.111 14.36 2.60 45.40 4.00
806 807 3.883744 CTGGTGCTGGACGTGGACC 62.884 68.421 7.95 7.95 44.62 4.46
815 816 4.960866 TGCTGGTGCTGGTGCTGG 62.961 66.667 0.00 0.00 40.48 4.85
816 817 3.667282 GTGCTGGTGCTGGTGCTG 61.667 66.667 0.00 0.00 40.48 4.41
817 818 4.962836 GGTGCTGGTGCTGGTGCT 62.963 66.667 0.00 0.00 40.48 4.40
819 820 3.289834 GTGGTGCTGGTGCTGGTG 61.290 66.667 0.00 0.00 40.48 4.17
820 821 4.586235 GGTGGTGCTGGTGCTGGT 62.586 66.667 0.00 0.00 40.48 4.00
821 822 4.584518 TGGTGGTGCTGGTGCTGG 62.585 66.667 0.00 0.00 40.48 4.85
822 823 3.289834 GTGGTGGTGCTGGTGCTG 61.290 66.667 0.00 0.00 40.48 4.41
823 824 4.586235 GGTGGTGGTGCTGGTGCT 62.586 66.667 0.00 0.00 40.48 4.40
824 825 4.892965 TGGTGGTGGTGCTGGTGC 62.893 66.667 0.00 0.00 40.20 5.01
825 826 2.906897 GTGGTGGTGGTGCTGGTG 60.907 66.667 0.00 0.00 0.00 4.17
826 827 4.204028 GGTGGTGGTGGTGCTGGT 62.204 66.667 0.00 0.00 0.00 4.00
853 854 0.893727 GGTCCGGTGCCACTTTTCAT 60.894 55.000 0.00 0.00 0.00 2.57
888 893 2.897846 CACGTCCGTGGTTTGGCA 60.898 61.111 11.83 0.00 42.00 4.92
1481 1585 8.780846 AATTAATTCAGCAGAAAATCAATGCA 57.219 26.923 0.00 0.00 42.45 3.96
1482 1586 8.333186 GGAATTAATTCAGCAGAAAATCAATGC 58.667 33.333 25.55 2.78 38.53 3.56
1483 1587 9.595823 AGGAATTAATTCAGCAGAAAATCAATG 57.404 29.630 25.55 0.00 38.53 2.82
1486 1590 9.643693 GAAAGGAATTAATTCAGCAGAAAATCA 57.356 29.630 25.55 0.00 38.53 2.57
1487 1591 8.801913 CGAAAGGAATTAATTCAGCAGAAAATC 58.198 33.333 25.55 7.79 38.53 2.17
1488 1592 8.306761 ACGAAAGGAATTAATTCAGCAGAAAAT 58.693 29.630 25.55 5.06 38.53 1.82
1489 1593 7.657336 ACGAAAGGAATTAATTCAGCAGAAAA 58.343 30.769 25.55 0.00 38.53 2.29
1490 1594 7.214467 ACGAAAGGAATTAATTCAGCAGAAA 57.786 32.000 25.55 0.00 38.53 2.52
1491 1595 6.817765 ACGAAAGGAATTAATTCAGCAGAA 57.182 33.333 25.55 0.00 38.53 3.02
1492 1596 6.611381 CAACGAAAGGAATTAATTCAGCAGA 58.389 36.000 25.55 0.00 38.53 4.26
1493 1597 5.287035 GCAACGAAAGGAATTAATTCAGCAG 59.713 40.000 25.55 15.79 38.53 4.24
1494 1598 5.048083 AGCAACGAAAGGAATTAATTCAGCA 60.048 36.000 25.55 0.00 38.53 4.41
1495 1599 5.402398 AGCAACGAAAGGAATTAATTCAGC 58.598 37.500 25.55 15.84 38.53 4.26
1496 1600 6.249260 CGAAGCAACGAAAGGAATTAATTCAG 59.751 38.462 25.55 14.66 35.57 3.02
1497 1601 6.083630 CGAAGCAACGAAAGGAATTAATTCA 58.916 36.000 25.55 0.00 35.57 2.57
1498 1602 6.540323 CGAAGCAACGAAAGGAATTAATTC 57.460 37.500 18.22 18.22 34.25 2.17
1526 1630 7.812191 ACTCTCTGCTAAAATATCGACATCATC 59.188 37.037 0.00 0.00 0.00 2.92
1527 1631 7.665690 ACTCTCTGCTAAAATATCGACATCAT 58.334 34.615 0.00 0.00 0.00 2.45
1528 1632 7.043961 ACTCTCTGCTAAAATATCGACATCA 57.956 36.000 0.00 0.00 0.00 3.07
1574 1678 5.295152 GGAGGGATACAGTAACGGTAATTG 58.705 45.833 0.00 0.00 39.74 2.32
1588 1692 1.445871 AAACGCAAACGGAGGGATAC 58.554 50.000 0.00 0.00 46.04 2.24
1590 1694 0.596082 CAAAACGCAAACGGAGGGAT 59.404 50.000 0.00 0.00 46.04 3.85
1648 1772 2.639286 CACAGGCACAAACGGAGC 59.361 61.111 0.00 0.00 0.00 4.70
1665 1789 7.553881 TTGCTAAACTAATGAGCAGTAATCC 57.446 36.000 0.00 0.00 46.29 3.01
1701 1828 1.524621 GACCATCCATGTGCCTCCG 60.525 63.158 0.00 0.00 0.00 4.63
1813 1950 1.194772 GTTTGACTCCTTGCGTAGTGC 59.805 52.381 0.00 0.00 46.70 4.40
1815 1952 1.779569 CGTTTGACTCCTTGCGTAGT 58.220 50.000 0.00 0.00 0.00 2.73
1817 1954 0.032952 AGCGTTTGACTCCTTGCGTA 59.967 50.000 0.00 0.00 0.00 4.42
1847 1984 4.338539 GCGTGGACGTCACTCCGT 62.339 66.667 18.91 0.00 43.94 4.69
1849 1986 1.136984 CTAGCGTGGACGTCACTCC 59.863 63.158 18.91 0.11 43.94 3.85
1867 2004 1.063469 CACAACAACACAGGAACGGAC 59.937 52.381 0.00 0.00 0.00 4.79
1903 2043 0.108615 GACTGACCATGACCCACGAG 60.109 60.000 0.00 0.00 0.00 4.18
2009 2160 5.093457 ACGTGATTAGTAGTTCACATGACG 58.907 41.667 0.00 0.00 41.85 4.35
2012 2163 5.798434 TCGAACGTGATTAGTAGTTCACATG 59.202 40.000 12.94 0.00 41.85 3.21
2016 2167 4.456911 AGGTCGAACGTGATTAGTAGTTCA 59.543 41.667 0.00 0.00 42.01 3.18
2017 2168 4.979388 AGGTCGAACGTGATTAGTAGTTC 58.021 43.478 0.00 0.00 39.46 3.01
2018 2169 5.163713 GGTAGGTCGAACGTGATTAGTAGTT 60.164 44.000 0.00 0.00 0.00 2.24
2019 2170 4.333926 GGTAGGTCGAACGTGATTAGTAGT 59.666 45.833 0.00 0.00 0.00 2.73
2020 2171 4.333649 TGGTAGGTCGAACGTGATTAGTAG 59.666 45.833 0.00 0.00 0.00 2.57
2021 2172 4.260985 TGGTAGGTCGAACGTGATTAGTA 58.739 43.478 0.00 0.00 0.00 1.82
2024 2175 3.674138 GCTTGGTAGGTCGAACGTGATTA 60.674 47.826 0.00 0.00 0.00 1.75
2026 2177 1.403780 GCTTGGTAGGTCGAACGTGAT 60.404 52.381 0.00 0.00 0.00 3.06
2030 2181 1.447314 GGGCTTGGTAGGTCGAACG 60.447 63.158 0.00 0.00 0.00 3.95
2031 2182 0.108281 GAGGGCTTGGTAGGTCGAAC 60.108 60.000 0.00 0.00 0.00 3.95
2032 2183 1.262640 GGAGGGCTTGGTAGGTCGAA 61.263 60.000 0.00 0.00 0.00 3.71
2035 2186 2.376165 GGGGAGGGCTTGGTAGGTC 61.376 68.421 0.00 0.00 0.00 3.85
2082 2307 2.434185 GCGTCGGATCCAACTGCA 60.434 61.111 13.41 0.00 0.00 4.41
2084 2309 1.874019 CTCGCGTCGGATCCAACTG 60.874 63.158 13.41 1.36 0.00 3.16
2095 2320 3.066481 AGAAGTTACTATTCCCTCGCGTC 59.934 47.826 5.77 0.00 0.00 5.19
2116 2341 6.911484 AAATTCGCAAGTTTCAACGATTAG 57.089 33.333 0.00 0.00 34.07 1.73
2135 2360 0.794473 GTCCGAGCGACCGAAAAATT 59.206 50.000 0.00 0.00 35.23 1.82
2136 2361 0.320073 TGTCCGAGCGACCGAAAAAT 60.320 50.000 0.00 0.00 41.18 1.82
2147 2372 2.663826 ACTCTGAATCTTGTCCGAGC 57.336 50.000 0.00 0.00 33.49 5.03
2151 2376 6.652481 TGAATTCTCAACTCTGAATCTTGTCC 59.348 38.462 7.05 0.00 32.43 4.02
2152 2377 7.664082 TGAATTCTCAACTCTGAATCTTGTC 57.336 36.000 7.05 0.00 32.43 3.18
2158 2383 5.240891 TCGCTTGAATTCTCAACTCTGAAT 58.759 37.500 7.05 0.00 36.62 2.57
2161 2386 5.542616 AATCGCTTGAATTCTCAACTCTG 57.457 39.130 7.05 0.00 36.62 3.35
2191 2416 7.928908 TGATAGACAAAATCACAACTTTTGC 57.071 32.000 8.08 2.95 43.92 3.68
2211 2436 9.802039 AACCTTTTAAACTTGGTATGAGTGATA 57.198 29.630 7.02 0.00 31.82 2.15
2360 2589 8.968242 GGCTTTCCATTTTCGATATTTCATAAC 58.032 33.333 0.00 0.00 0.00 1.89
2369 2598 6.582677 TCTTTTGGCTTTCCATTTTCGATA 57.417 33.333 0.00 0.00 43.05 2.92
2379 2608 2.539688 CGTGCTTTTCTTTTGGCTTTCC 59.460 45.455 0.00 0.00 0.00 3.13
2385 2614 0.939106 CGGGCGTGCTTTTCTTTTGG 60.939 55.000 0.00 0.00 0.00 3.28
2429 2659 0.583438 CAGAGAGTGTTTGTGGCACG 59.417 55.000 13.77 0.00 41.36 5.34
2440 2670 2.391616 TAAGCACATGCCAGAGAGTG 57.608 50.000 0.00 0.00 43.38 3.51
2449 2679 7.166970 CAGTTGTTATGATGATTAAGCACATGC 59.833 37.037 14.80 0.00 42.49 4.06
2456 2686 7.224753 ACCGTAGCAGTTGTTATGATGATTAAG 59.775 37.037 0.00 0.00 0.00 1.85
2459 2689 5.294306 CACCGTAGCAGTTGTTATGATGATT 59.706 40.000 0.00 0.00 0.00 2.57
2470 2700 1.673920 ACCAAAACACCGTAGCAGTTG 59.326 47.619 0.00 0.00 0.00 3.16
2474 2704 0.535553 GGGACCAAAACACCGTAGCA 60.536 55.000 0.00 0.00 0.00 3.49
2476 2706 1.970092 TTGGGACCAAAACACCGTAG 58.030 50.000 0.32 0.00 32.44 3.51
2521 2751 1.986413 CACAGAGGGAAGTGGAGGG 59.014 63.158 0.00 0.00 32.24 4.30
2538 2768 0.550914 AGGTGAAGTGGAAGTTGCCA 59.449 50.000 0.00 0.00 35.02 4.92
2556 2786 2.223900 TGCCATCGAGCAGAGTTGATAG 60.224 50.000 0.00 0.00 38.00 2.08
2558 2788 0.538584 TGCCATCGAGCAGAGTTGAT 59.461 50.000 0.00 0.00 38.00 2.57
2561 2791 1.446792 CGTGCCATCGAGCAGAGTT 60.447 57.895 0.00 0.00 45.14 3.01
2571 2801 2.258286 GGGTTGCAACGTGCCATC 59.742 61.111 22.67 7.31 44.23 3.51
2615 2845 2.169978 TCTCCTGATGCTTGATGAGTGG 59.830 50.000 0.00 0.00 0.00 4.00
2630 2860 3.041469 GCCCCTGCTCCTTCTCCTG 62.041 68.421 0.00 0.00 33.53 3.86
2633 2863 2.588989 CTGCCCCTGCTCCTTCTC 59.411 66.667 0.00 0.00 38.71 2.87
2635 2865 3.011517 TCCTGCCCCTGCTCCTTC 61.012 66.667 0.00 0.00 38.71 3.46
2640 2870 3.013932 CTTCCTCCTGCCCCTGCT 61.014 66.667 0.00 0.00 38.71 4.24
2659 2889 5.337894 CCACCACTCTTTCTCATCATACACT 60.338 44.000 0.00 0.00 0.00 3.55
2668 2898 2.677914 TCAGTCCACCACTCTTTCTCA 58.322 47.619 0.00 0.00 30.26 3.27
2672 2902 2.289072 CGTGATCAGTCCACCACTCTTT 60.289 50.000 0.00 0.00 30.26 2.52
2697 2927 2.343758 GAGCAGCCTCCACAACGA 59.656 61.111 0.00 0.00 31.68 3.85
2700 2930 2.454832 CTTCCGAGCAGCCTCCACAA 62.455 60.000 0.00 0.00 34.49 3.33
2701 2931 2.922503 TTCCGAGCAGCCTCCACA 60.923 61.111 0.00 0.00 34.49 4.17
2736 2966 1.906333 GTGGTCCCAAAATGGCGGT 60.906 57.895 0.00 0.00 35.79 5.68
2778 3008 4.758251 CACTCCGACCATGCGCCA 62.758 66.667 4.18 0.00 0.00 5.69
2781 3011 1.517257 GTCTCACTCCGACCATGCG 60.517 63.158 0.00 0.00 0.00 4.73
2788 3018 2.636412 CGGCCTTGTCTCACTCCGA 61.636 63.158 0.00 0.00 39.23 4.55
2806 3036 4.111016 GCGTAAACGGGCCAAGGC 62.111 66.667 4.39 1.52 40.23 4.35
2807 3037 3.795342 CGCGTAAACGGGCCAAGG 61.795 66.667 4.39 0.00 44.83 3.61
2814 3044 0.925466 CCTCCATTACGCGTAAACGG 59.075 55.000 32.89 31.55 40.23 4.44
2815 3045 0.299597 GCCTCCATTACGCGTAAACG 59.700 55.000 32.89 25.35 43.27 3.60
2816 3046 0.654160 GGCCTCCATTACGCGTAAAC 59.346 55.000 32.89 17.99 0.00 2.01
2817 3047 0.462403 GGGCCTCCATTACGCGTAAA 60.462 55.000 32.89 17.49 0.00 2.01
2818 3048 1.144496 GGGCCTCCATTACGCGTAA 59.856 57.895 31.64 31.64 0.00 3.18
2819 3049 2.816718 GGGCCTCCATTACGCGTA 59.183 61.111 16.41 16.41 0.00 4.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.