>input_sequence_67506
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--------------------------------------------GCGGCCGGTCACGCACGCCTCCCAAAAGCCCCACCC
CCACGGA------CCCCAGCAAAAGCGCCTCGCCTTTTCCT--------------------TCCCCTACCTCGGAGCGGA
GCCAAGAGCC-----GGAGGCGGCGGCC-AAGATCAGCAAGATGTGCTGCTGCCCGAGCAAGGCGTGCTGCATCTGCATG
CTCATCATCCTCGTCCTCATCGCCGTCGGCCTCGTCTTCGGCTTCGGCGTCTACACCCGCGGCTTCCACAAGCTCTCCTC
CAGCATCCACCTCCAGGACGGCGCCTCCTACCGCGCCTACGGCCACCTCAACCTCGCGCCGCCGCCCGCCTACTACTAGA
GAGAGCCCACAGGGCTCCCTCCCTCCCCCGGGATCTACTCCGCCAGCAGCACGGCATGGATTGGGCTTCGTCT----CCG
GCGTTCCGTCGCGCGGTGGGGATCGATCCCCTGCACAGCGTCATGCCGTCTGCGAAGAAGAGATTCCGGGGCCGGTCGAT
---------------------------------------------------------------TTGCATTGATTTTCTGC
TGAATTAATTCCTTTCGTTGCTTCGCTCCGATGATGTCGATATTTTAGCAGAGAGTATATTTACAGATTGATGATGACAA
TTACCGTTACTGTATCCCTCCGTTTGCGTTTTGTTAATTACTGCT--------------------GCTCATTAGTTTAGT
GCTTCATCACGGCTCCGTTTGTGCCTGTGGATTA---CTGCTCATTAGTTTAGCAAATACTCCATCACGGAGGCACATGG
ATGGTCGGG---GTTATCCGGCGAGTTGCGATAATCTCGGCGTCTGGCCTTG-------GCACTTGGCAGCATGTGCTTT
TCGGTTTGGCTTGACGCACGAACTGCACTGCACTACGCAAGGAGTCAAACGCT---------------------------
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>chr5D_1_TraesCS5D01G264300
AAAATGTTTATACATTGTAAAACATATGTTTGTATAATTTTAAAAAATGATTCGTACATTAAAAAAACTTATGTTACATT
TAAAAATGCTCACAAGTTTTAAGAATGCGTTCGGACATTAAAAAAAACTGTACACATTCAGAAAAGGTTGCATAGTTCAG
AAAATAATTATCGTTTAAAAAATGTTAACATGTATTTGAAAGAACGTTCAAAACATGTATTACAAAAATGCGAATTTTTA
TAAAATGTGTTTTAGATGTACATGAAAAATGTGTAACATGTACAAATAAAGTAGACAATAAAACATATATTCGGAAAAAT
GTTAATCATCTTTTGAAAAATATTAAACGTGTGTAAAAAATGCTCCTTATGTACAATCCATATGAAAAATGTAGACATGT
GTTGAAAAAACCCGAAGACAATCAGAAAAAGGTGAAAACAATGAAAGAAACAAAGAAATAATATAAAAAAATAAGAAGGA
AAAAACACAAAGAAAAAACGATATAACCATGAAAGAAACAAAAATAAAACTGAAGAAAAAAAATTCAAAACCGAAAAAAG
AAATAAAAACAGGAACCGTCCGAAGCGAACTGTAGCCCATTACGCTCGAACGCACGAAAATGGGCTGGCCGGTACTTGTA
GCACCTACAGGCGATGCCTATTATAACTCAAGTATGGGCGATAGATTGCATTTGCGCCTTGGATCACGTGGACTCCACGT
CCAAAGAAGCCTGGAGACGGAACGACGTCCCACCCGACGACCCAGGTACCAAACCGTGCCGCTCCCCGTCTCCGGAACCG
CAACGGGGTCCACGTCCAGCACCAGCACCAGCACCACCACCACCACCTCGCCCATGAAAAGTGGCACCGGACCGAAGCC-
---ACGACCGCCTGCCAAACCACGGACGTGACCGCACCGCACCGCAACTCGACACCGAACCAACCCGATTCCCCCCACCC
AACGAGCAGCGGAGCGGAGCGGAGCGGCCTCTATAAACAGCCGCGCGGCCGGTCACGCACGCCTCCCAAAAGCCCCACCC
CCACGGA------CCCCAGCAAAAGCGCCTCGCCTTTTCCT--------------------TCCCCTACCTCGGAGCGGA
GCCAAGAGCC-----GGAGGCGGCGGCC-AAGATCAGCAAGATGTGCTGCTGCCCGAGCAAGGCGTGCTGCATCTGCATG
CTCATCATCCTCGTCCTCATCGCCGTCGGCCTCGTCTTCGGCTTCGGCGTCTACACCCGCGGCTTCCACAAGCTCTCCTC
CAGCATCCACCTCCAGGACGGCGCCTCCTACCGCGCCTACGGCCACCTCAACCTCGCGCCGCCGCCCGCCTACTACTAGA
GAGAGCCCACAGGGCTCCCTCCCTCCCCCGGGATCTACTCCGCCAGCAGCACGGCATGGATTGGGCTTCGTCT----CCG
GCGTTCCGTCGCGCGGTGGGGATCGATCCCCTGCACAGCGTCATGCCGTCTGCGAAGAAGAGATTCCGGGGCCGGTCGAT
---------------------------------------------------------------TTGCATTGATTTTCTGC
TGAATTAATTCCTTTCGTTGCTTCGCTCCGATGATGTCGATATTTTAGCAGAGAGTATATTTACAGATTGATGATGACAA
TTACCGTTACTGTATCCCTCCGTTTGCGTTTTGTTAATTACTGCT--------------------GCTCATTAGTTTAGT
GCTTCATCACGGCTCCGTTTGTGCCTGTGGATTA---CTGCTCATTAGTTTAGCAAATACTCCATCACGGAGGCACATGG
ATGGTCGGG---GTTATCCGGCGAGTTGCGATAATCTCGGCGTCTGGCCTTG-------GCACTTGGCAGCATGTGCTTT
TCGGTTTGGCTTGACGCACGAACTGCACTGCACTACGCAAGGAGTCAAACGCTTTCGGGGGAAACGGAGTGACGTCCACG
CTAGTCCGTTCCTGTGTTGTTGT---GTACTCTACGATACTTCTCG--------TGGGTCATGGTCAGTCAGCATATTTG
GTTGCCCGTCCACTGAAAAGGTT---GTAGTGGTTCCGTTGCCTTGCACGTTCGACCTGCTGAGTTGAAACGGCGATGCC
GTCATGTGAACTACTAATCACGTTCG------------------------------------------------------
-------------------ACCTACCAAGCCCTCCCCAGCCATCCGATT-GTTTTGTGATTCGCAATGCAGTTGGATCCG
ACGCGAGGGAATAGTAACTTCTAATCGTTGAAACTTGCGAATTTTTCGGTCGCTCGGACAAGATTCAGAGTTGAGAATTC
AAGCGATTTTTTTATGCAAAAGTTGTGATTTTGTCTATCACTCATACCAAGTTTAAAAGGTTGAAACTCAACG---TTTT
TTTAAAGAACTCCTCCAAATGTATTCAAAATGGATCTTGTTTGAAAGCCATCGTCACGGAAAACATGAATG-TGAAAACA
CAATTTAATTTGGATTTTTTGTTCAAAAGTTATGAAATATCGAAAATGGAAAGCCAAAAG-AAAAGCACGCCCGAGGGAC
TCGGTGCCCCCGCACCTGCGTGCCACAAACACTCTCTGGCATGTGCTTAATCATCATAACAACTGCTACGGTGTTTTGGT
CCCAAAACCGCCCTAAAAGGCCGACACATCCCCTCCACTTCCCTCTGTGGCAACTTCCACTTCACCTATCAACTCTGCTC
GATGGCACGTTGCAACCCCATGGCCGCCAACATCAAGCAAAACCCCACTCATCAAGCATCAGGAGAAGGAGCAGGGGCAG
GAGGAAGCAGTGTATGATGAGAAAGAGTGGTGGACTGATCACGCGCTCGTTGTGGAGGCTGCTCGGAAGATGGACGTTGG
GAGGGACCGCCATTTTGGGACCACACATCCGTTGTTGATGCCGATGATGGCGCATGGTCGGAGTGAGACAAGGCCGCCTT
GGCCCGTTTACGCGTAATGGAGGCCC
>chr5A_771
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--------------------------------------------------AAACCGTGCCGTT-CCCGTCTCCGGAACCG
CAACGGTGTCCACGT------------CCAGCACCACCGCCACCACCTTGCCCTTGAAAAGTGGCACCGGACCGAAGCCA
GCCACGACCGCCAGCCAAACCACGGACGTGACCGCACCGCACCGCGACTCGACACCGAGCCAACCCGATTCCCCCAACCC
AACCAGCACA-----GGAGCGGAGCGGTCTCTATAAACAGCCGCGCGGCCGGTCACGCACGCCTCCCAAAAGCCCCACCC
CCCACCCCCACGGCCCCAGCAAAAGCGCCTCGCCTTTTCCT--------------------TCCCCTACCTCGGAGCGGA
GCCAGGAGCC-----GAAGCCGGAGGAGGAAGATCAGCAAGATGTGCTGCTGCCCGAGCAAGGCGTGCTGCATTTGCATG
CTCATCATCCTCGTGCTCATCGCCGTCGGCCTCGTCTTCGGCTTCGGCGTCTACACCCGCGGCTTCCACAAGCTCTCCTC
CAGCATCCACCTCCAGGACGGCGCCTCCTACCGCGCCTACGGCCACCTCAACCTCGCGCCCCCGCCCGCCTACTACT---
-AGAGCCCAGAGGGCTCCCTCCCTCCCCCGGGATCTACTCTGCCAGCAGCACGGCATGGGATGGATCCCCTCCGGCCCCG
GCGGTCCGCCGCGCCCTGGGGATCGATCCCCCGCACAGCGGCATGCCGTCCGCGAAGAGGAGATTCCGGGGCCGGTCGAT
---------------------------------------------------------------T----------------
----------------------------------------------AGCAGAGATTATATTTACAGATTGATGATGATAA
TTACC-------------TCCCTTTGCGTTTTGTTAATTACCGCTCATTGGTTGAAAAAATTACTGCTCGTTAGTTTAGT
GCTCCATCATGCCTCCGTTTGTGCCTGTTTATTA---CTGCTCATTAGTTTAGCGCTCCAT-CATCATGGAGGCACATGG
ATGGTCGGGATAGTTATCCGGCGAGTTGCGATAATCTCGGCGTCTGGCCTTGGCAGTTGGCACTTGGCAGCATGTGCTTT
TCGGTTTGGCTTGACGCACGAACTGCACTACGCAACGCAAGGAGTCAGACGCTTTCTGAGGAAGCAGAGTGACGTCCACG
CTAATCCGTTCCTGTGTTGTTGTTGTGTACTCCACGATACTTGTCG--------TGGGTCATGGTCAGTCAGCAGATTTG
GTTGCCCGTCCACTGAAAAGGTT---GTAGTGGTTCCGTTGCCTTGCACGTTCGACCTGCTGAGTTGAAACGGCGATGCA
GTA---ATGTGAGCCACTCATAATCACTCTACTAACTGCCCCGTAATAAACCCATGACGGCAAAAGCCTGATAGATGCGT
GGTATGTGGTTTAGCACGCACCTGCCAAGCCCTCCCCAGCCATCCGATTTGTTCTGTGATTTGCAAAGTAGTTGCATCCA
GCGCGAGGGAATAGTAACTTTTAATAGTTGAAACTTGCGGTTTTTTCGGTCCCTCATACAAGTTTTAGAGTTGAAAATTC
AAGCGATTGTTTTATACAAAATTTGTGATTTTGTCGATCACTCACACTAAGTTTAAAATGTTAAAACTCAACGGATTTTT
TTTAAAGAACTCCTCCAAATGTATTCAAAATGGATCTTGTTTGAAAGCCATGGTCACGAAAAAATATGAATACAAAAACA
CAATTTAATTTGGACTTTTTGTTCAAAA-TTATGAAACATCGAAAATCAAAAGGCAAAAGCAAAAGCACGCACGAGGGAC
TCAGTGCCCCCGCACCTGTGTGCCACAAAAACTCTCTGTCATGTGGTTGATCATCATAATAACCGATACGGTGTTTTGGT
CCCAAAACCACCCTAAAAGGCCGACACATCACCTCCACTTCCCTCCGCGGCAACTTCCACTTCACTTCTCCACTCTGCTC
AATGGCACGTCGCAACCCCATGGCCGCCAACATCAAGCAAAACCTCACTCATCAAGCATGAGAAAAAGGGGCAGGGGCAG
GAGGAAGCGGTGTATGACGAGGAAGAGTGGTGGGCCGACCACACGCCCGCCGTGGAGGCTGCTCGGAAGATGGACGTTGG
GAGGGCCCGCCATTTTGGGACCACACATCCGGTGTTGATGCCGATGA-GGTGCATGGCCGGAGTGAGACAAGGCC-----
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>chr5B_828
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---------------------------CCAGCACCACCACCGCCACCTCGCCCTTGAAAAGTGGCACCGGACCGGAGCC-
---ACGACCGGCAGCCAAACCACGG----------ACCGCACCGCAACTCGACACCGAACCAACCCGATTCCCCCCACCC
AACGAGTAGCGGAGCGGAGCGG----GCCTCTATAAACAGCCGCGCGGCCGGTCACGCACGCCTCCCAGAG------CCC
CCACGGA------CACCAGCAAAAGCGCCTCGCCTTTTCCGTTACCTTTTCTTCCTTGTCCTCCCCTACCTCGGAGCGAA
AGAGCAGGAGCCGGAGGCGGCGGCGGCC-GAGATCAGCAAGATGTGCTGCTGCCCGAGCAAGGCGTGCTGCATCTGCATG
CTCATCATCCTCGTCCTCATCGCCGTCGGCCTCGTCTTCGGCTTCGGCGTCTACACCCGCGGCTTCCACAAGCTCTCCTC
CAACATCCACCTCCAGGACGGCGCCTCCTACCGCGCCTACGGCCACCTCAACCTCGCGCCGCCGCCATCCTACTACT---
-AGAGC---------TCCCTCCCTCCCCCGAGATCTACTCTGTCAGCAGCACGGCATGCATTGGGCTCTGTCT----CCC
GTGTTCCGTCGCGCGGTGGGGATCGATCCCCTGCACAGCGTCATGCCGTCTGCGAAGAAGAGATTCCGGGGCCGGTCGAT
TTACATTGATTTCCTGCTGAATTAATTCCCGTTTGTTGCTTCGCTCCGATGATGTCGATATTTT----------------
----------------------------------------------AGCAGAGATTATATTTACAGATTGATGATGATAA
TTACCGTTACTATGTCCCTCCGTTTGCGTTTTGTTAATTACTGCT--------------------GCTCATTAGTTTAGT
GCTCCATCATGCCTTCGTTTGTGCCTGTTTATTACTGCTGCTCATTAGTTTAGCAAATACCCCATCATGGAGGCACATGG
ATGGTCGGG---GTTATCCCGCGAATTGCGATAATCTCGGCGTCTGGCC-------TTGGCACTTGGCAGCATGTGCTTT
TCGGTTTGGCTTGACGCACGAACTGCACT-----ACGCAAGGAGTCAAACGCTTTCGGGGGAAGCAGAGTGACGTCCACG
CTCCTG-----------TGTTGTTGTGCACTCTACGATACGTACTCTGACATTCTGGGTCATGGCCGGTCAGCAGATTTG
GTTGCCCGTCCACCCAAAAGGTAGTAGTAGTGGTTCCGTTGCCTTGCACGTTCGACTTTCCGAGTTGAAACGGCGATGCA
GTGATGATGTGAACCACTCATAATCACTCTA---ACTGCCCCGTAATGAACCCATGACGGCAAAAGCCTGATAGATGCAT
GATATGTGGTTCAGAAATTGCG---CAGGGCCTCCCAAGCCACACGAC-TGTCTTGTGATTCGCAAAGTAGTTGGATTTC
ACACGAGAGAATAGTAATTTTTAATCTCTGAAACTC-----------------------------------TGAAATTTC
AAGCAATTTTTTTATACAAAAGTTGGGATTTTGTCGATCACTCATACTAAGTTTAAAAGGTTTAAACTTAACAGATTTTT
TAAGTAAAACTCCTCCAAATGTATTCAAAATGGATCTTGTTCGAAAGCCATCGTCACGAAAC-ATATGAATATGAAAACA
CAATTTAATTTGGACTTTTCATTCAAAA-TTATGAAAGATCTAGAATCGAAAGGCAAAGA-AAAAGCACGTGCAAGGGAC
TCGGTG--------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S-S----------------
------S--------SSSSSSSSSSSS--------------------------S--------------------------
------------S-------------------------------------------------------------------
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----S---------------------------------------------------------------------------
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-----------------------------------------------------------------------------SSS
S--------S------------------------------S--------------------------S------------
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----------------------------------------------------------------SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S----------------------S--
-----------S-S------------------------------------------------------------------
---S-----S-S----------------SS-------------------------------------S------------
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-----------------------------S-S-S-----------------------------S-S--------------
---S--------------------------------------S-------------------------------S-----
-------------------------------------------------------------------------------S
--S---SSSSSS--S-S---SSS--S------------------------------------------------------
-----------------------S------------------------------------------S-S----------S
--------------------S------------------SS----------S---SS-----S--S--------S-----
---------------S-------------------S-----------S--------------S-----------------
----------------------------------------------------------S----SSSSS-SS---------
--------------S-------------S--------S---------S-----S-----------------S--------
------------------S----------S--------S------S--S----------S---S-S--------------
---------S--------------------S--------------S-S-----------------S-S--S---------
S---------S---------------------------------S--------------S--S-S----S----------
--------S--------S---S-----------S-S--S---S---S--SS-----------------------------
-----S-------------------------S---------------S--S------S-----------------SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_732
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------------------------------------------------------------------------CTCCACGT
CCAAAGAAGCCT--------------------------------------------------------------------
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>reverse_1954
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---------------------------------TACGCAAGGAGTCAAACGCT---------------------------
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>forward_736
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----------------------------------------------------------------------------ACGT
CCAAAGAAGCCTGGAG----------------------------------------------------------------
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>reverse_2182
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---------------------GTTCGACCTACCAAGCCCTC---------------------------------------
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