Multiple sequence alignment - TraesCS5D01G264100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G264100 chr5D 100.000 3375 0 0 1 3375 369302132 369305506 0.000000e+00 6233.0
1 TraesCS5D01G264100 chr3D 91.161 758 52 4 1 748 336943785 336944537 0.000000e+00 1014.0
2 TraesCS5D01G264100 chr5A 84.211 1102 95 40 1361 2440 471704758 471705802 0.000000e+00 998.0
3 TraesCS5D01G264100 chr5A 86.937 222 15 10 973 1188 471704345 471704558 1.570000e-58 237.0
4 TraesCS5D01G264100 chr5A 80.386 311 57 4 443 750 37079895 37080204 2.020000e-57 233.0
5 TraesCS5D01G264100 chr5A 94.059 101 1 2 3144 3240 471707572 471707671 7.550000e-32 148.0
6 TraesCS5D01G264100 chr5B 87.368 855 63 22 1550 2378 437916228 437917063 0.000000e+00 939.0
7 TraesCS5D01G264100 chr5B 87.931 580 21 14 751 1321 437914527 437915066 3.670000e-179 638.0
8 TraesCS5D01G264100 chr5B 97.235 217 5 1 1313 1529 437915232 437915447 1.910000e-97 366.0
9 TraesCS5D01G264100 chr5B 93.269 104 4 3 3140 3240 437922067 437922170 2.100000e-32 150.0
10 TraesCS5D01G264100 chr5B 89.796 49 4 1 2914 2961 263536126 263536078 1.010000e-05 62.1
11 TraesCS5D01G264100 chr5B 94.872 39 2 0 3335 3373 437925181 437925219 1.010000e-05 62.1
12 TraesCS5D01G264100 chr6A 86.800 750 94 4 1 749 106979129 106979874 0.000000e+00 832.0
13 TraesCS5D01G264100 chr4B 85.067 750 106 4 1 748 599834582 599835327 0.000000e+00 760.0
14 TraesCS5D01G264100 chr4B 83.516 91 10 5 2899 2989 6538134 6538219 2.790000e-11 80.5
15 TraesCS5D01G264100 chr1D 86.657 697 72 9 10 705 470134223 470134899 0.000000e+00 752.0
16 TraesCS5D01G264100 chr1D 97.500 40 0 1 2914 2952 397645070 397645109 2.170000e-07 67.6
17 TraesCS5D01G264100 chr7B 76.618 757 155 15 6 747 688049980 688050729 6.790000e-107 398.0
18 TraesCS5D01G264100 chr7B 97.222 36 1 0 2927 2962 85782057 85782092 1.010000e-05 62.1
19 TraesCS5D01G264100 chr2A 75.066 762 170 16 1 749 530585379 530586133 1.500000e-88 337.0
20 TraesCS5D01G264100 chr2A 76.954 499 108 7 253 748 174011409 174010915 9.220000e-71 278.0
21 TraesCS5D01G264100 chr1A 74.863 728 162 17 42 755 361064979 361065699 9.090000e-81 311.0
22 TraesCS5D01G264100 chr1A 74.376 761 174 17 1 748 348726682 348727434 4.230000e-79 305.0
23 TraesCS5D01G264100 chr1A 92.126 127 10 0 2723 2849 508198269 508198143 2.680000e-41 180.0
24 TraesCS5D01G264100 chr1A 95.000 40 1 1 2914 2952 495183313 495183352 1.010000e-05 62.1
25 TraesCS5D01G264100 chr2D 79.361 407 80 4 344 748 85241778 85242182 1.980000e-72 283.0
26 TraesCS5D01G264100 chr4A 91.339 127 11 0 2723 2849 47627626 47627500 1.240000e-39 174.0
27 TraesCS5D01G264100 chr4A 85.714 77 7 4 2899 2974 599490903 599490976 1.000000e-10 78.7
28 TraesCS5D01G264100 chr7D 90.226 133 10 3 2729 2858 431926949 431926817 1.610000e-38 171.0
29 TraesCS5D01G264100 chr7D 88.333 120 12 2 2727 2845 377037696 377037814 3.510000e-30 143.0
30 TraesCS5D01G264100 chr7D 85.593 118 16 1 2730 2846 414102688 414102805 4.570000e-24 122.0
31 TraesCS5D01G264100 chr7D 83.200 125 20 1 2727 2850 467446361 467446485 2.750000e-21 113.0
32 TraesCS5D01G264100 chr7D 88.000 75 9 0 1378 1452 540635686 540635760 4.640000e-14 89.8
33 TraesCS5D01G264100 chr1B 91.228 114 10 0 2735 2848 487947738 487947625 4.510000e-34 156.0
34 TraesCS5D01G264100 chr1B 95.122 41 0 1 2914 2952 533192576 533192616 2.810000e-06 63.9
35 TraesCS5D01G264100 chr6B 89.916 119 12 0 2727 2845 128023955 128024073 1.620000e-33 154.0
36 TraesCS5D01G264100 chr2B 87.288 118 14 1 2730 2846 642814815 642814932 2.110000e-27 134.0
37 TraesCS5D01G264100 chr4D 85.714 63 5 4 2920 2978 44421535 44421597 2.810000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G264100 chr5D 369302132 369305506 3374 False 6233.000000 6233 100.000000 1 3375 1 chr5D.!!$F1 3374
1 TraesCS5D01G264100 chr3D 336943785 336944537 752 False 1014.000000 1014 91.161000 1 748 1 chr3D.!!$F1 747
2 TraesCS5D01G264100 chr5A 471704345 471707671 3326 False 461.000000 998 88.402333 973 3240 3 chr5A.!!$F2 2267
3 TraesCS5D01G264100 chr5B 437914527 437917063 2536 False 647.666667 939 90.844667 751 2378 3 chr5B.!!$F1 1627
4 TraesCS5D01G264100 chr6A 106979129 106979874 745 False 832.000000 832 86.800000 1 749 1 chr6A.!!$F1 748
5 TraesCS5D01G264100 chr4B 599834582 599835327 745 False 760.000000 760 85.067000 1 748 1 chr4B.!!$F2 747
6 TraesCS5D01G264100 chr1D 470134223 470134899 676 False 752.000000 752 86.657000 10 705 1 chr1D.!!$F2 695
7 TraesCS5D01G264100 chr7B 688049980 688050729 749 False 398.000000 398 76.618000 6 747 1 chr7B.!!$F2 741
8 TraesCS5D01G264100 chr2A 530585379 530586133 754 False 337.000000 337 75.066000 1 749 1 chr2A.!!$F1 748
9 TraesCS5D01G264100 chr1A 361064979 361065699 720 False 311.000000 311 74.863000 42 755 1 chr1A.!!$F2 713
10 TraesCS5D01G264100 chr1A 348726682 348727434 752 False 305.000000 305 74.376000 1 748 1 chr1A.!!$F1 747

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
842 878 1.00444 GCCTGGTCGCCTCATATCC 60.004 63.158 0.0 0.0 0.0 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2726 3783 0.105862 TCCGGACGGAGGGAATATGT 60.106 55.0 9.76 0.0 39.76 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
140 141 3.685139 GAATCTTCCAGAGTCCACACA 57.315 47.619 0.00 0.00 33.57 3.72
250 269 2.001361 ATTGTACCCTCGACTCGGCG 62.001 60.000 0.00 0.00 0.00 6.46
325 344 1.407656 TTCAACAGAGGTGGCTCGGT 61.408 55.000 0.00 0.00 33.42 4.69
339 358 4.312231 CGGTTGCGGCCATATGCG 62.312 66.667 2.24 0.00 42.61 4.73
437 457 3.034030 GCTTGCCGTGAAGCACTT 58.966 55.556 10.03 0.00 46.46 3.16
495 515 1.293498 GCTTCGGACTCCAAGCTGA 59.707 57.895 18.04 0.00 41.61 4.26
625 659 3.251729 GCGTTGAATGGTGATGCTCATAT 59.748 43.478 0.00 0.00 0.00 1.78
648 682 5.767269 TCATAGCTAGATCTTCGCTTTCTG 58.233 41.667 20.09 15.61 35.33 3.02
653 687 4.808364 GCTAGATCTTCGCTTTCTGTTCAT 59.192 41.667 0.00 0.00 0.00 2.57
808 844 3.006110 CACTGTTGGTTACCGACTAGGAA 59.994 47.826 21.13 1.34 45.00 3.36
815 851 3.742882 GGTTACCGACTAGGAAACAACAC 59.257 47.826 0.00 0.00 45.00 3.32
817 853 1.269936 ACCGACTAGGAAACAACACGG 60.270 52.381 0.00 0.00 45.00 4.94
842 878 1.004440 GCCTGGTCGCCTCATATCC 60.004 63.158 0.00 0.00 0.00 2.59
856 892 2.018727 ATATCCCGCCGTACGTGCAA 62.019 55.000 22.55 11.57 41.42 4.08
868 904 2.051345 GTGCAACGCAAACCCTCG 60.051 61.111 0.00 0.00 41.47 4.63
869 905 3.283684 TGCAACGCAAACCCTCGG 61.284 61.111 0.00 0.00 34.76 4.63
870 906 4.700365 GCAACGCAAACCCTCGGC 62.700 66.667 0.00 0.00 0.00 5.54
871 907 3.283684 CAACGCAAACCCTCGGCA 61.284 61.111 0.00 0.00 0.00 5.69
872 908 2.978010 AACGCAAACCCTCGGCAG 60.978 61.111 0.00 0.00 0.00 4.85
876 912 4.659172 CAAACCCTCGGCAGCCCA 62.659 66.667 5.63 0.00 0.00 5.36
877 913 4.660938 AAACCCTCGGCAGCCCAC 62.661 66.667 5.63 0.00 0.00 4.61
899 935 2.028876 TCGATCCACCGCTCATCTAAA 58.971 47.619 0.00 0.00 0.00 1.85
900 936 2.628178 TCGATCCACCGCTCATCTAAAT 59.372 45.455 0.00 0.00 0.00 1.40
901 937 3.824443 TCGATCCACCGCTCATCTAAATA 59.176 43.478 0.00 0.00 0.00 1.40
910 946 4.508124 CCGCTCATCTAAATATAATCCCGC 59.492 45.833 0.00 0.00 0.00 6.13
935 971 1.664965 GCCTCTCACGCGAACTTGT 60.665 57.895 15.93 0.00 0.00 3.16
997 1035 1.223763 GGACTCGGGGATTTGGGAC 59.776 63.158 0.00 0.00 0.00 4.46
1066 1105 2.437343 GCGTGCCTTCTTCTCGACG 61.437 63.158 0.00 0.00 0.00 5.12
1129 1175 1.008309 GCGCCTCTAGTCCATCGTC 60.008 63.158 0.00 0.00 0.00 4.20
1187 1238 5.566032 CGAGAATCCATGCCGGTTATAAGTA 60.566 44.000 1.90 0.00 35.57 2.24
1188 1239 6.374417 AGAATCCATGCCGGTTATAAGTAT 57.626 37.500 1.90 0.00 35.57 2.12
1267 1318 1.799181 CGATGCCTCGTGTGTAGAAGG 60.799 57.143 2.94 0.00 40.07 3.46
1268 1319 0.108138 ATGCCTCGTGTGTAGAAGGC 60.108 55.000 5.30 5.30 42.28 4.35
1297 1348 4.261031 CCTTGTTCGTTTTTCTTCGATGGT 60.261 41.667 0.00 0.00 36.01 3.55
1304 1355 3.889196 TTTTCTTCGATGGTTTGGACG 57.111 42.857 0.00 0.00 0.00 4.79
1305 1356 2.823924 TTCTTCGATGGTTTGGACGA 57.176 45.000 0.00 0.00 0.00 4.20
1306 1357 3.328382 TTCTTCGATGGTTTGGACGAT 57.672 42.857 0.00 0.00 34.85 3.73
1345 1575 5.728637 AAATCTCTTTGAAACCATGACCC 57.271 39.130 0.00 0.00 0.00 4.46
1381 1615 0.609131 ACGAATTTGCTGTCCCAGGG 60.609 55.000 0.00 0.00 31.21 4.45
1471 1705 1.225745 CGTCGAATTTGGACAGCGC 60.226 57.895 0.00 0.00 34.04 5.92
1526 1760 0.608640 GATCTGGGACACGGTCTGTT 59.391 55.000 4.41 0.00 31.03 3.16
1528 1762 1.707106 TCTGGGACACGGTCTGTTAA 58.293 50.000 4.41 0.00 31.03 2.01
1529 1763 1.342174 TCTGGGACACGGTCTGTTAAC 59.658 52.381 0.00 0.00 31.03 2.01
1546 1780 9.090692 GTCTGTTAACTTAATTGTTCCGCTATA 57.909 33.333 7.22 0.00 0.00 1.31
1547 1781 9.826574 TCTGTTAACTTAATTGTTCCGCTATAT 57.173 29.630 7.22 0.00 0.00 0.86
1548 1782 9.864034 CTGTTAACTTAATTGTTCCGCTATATG 57.136 33.333 7.22 0.00 0.00 1.78
1571 2570 8.928270 ATGTATAAACCTTCAGACGAAACTAG 57.072 34.615 0.00 0.00 0.00 2.57
1591 2594 7.778470 ACTAGTTAAATGCATTCTCTACTGC 57.222 36.000 13.38 0.00 38.87 4.40
1598 2601 5.557891 ATGCATTCTCTACTGCTTTCAAC 57.442 39.130 0.00 0.00 39.16 3.18
1599 2602 4.388485 TGCATTCTCTACTGCTTTCAACA 58.612 39.130 0.00 0.00 39.16 3.33
1640 2647 4.180057 CCTCTACTGAAGTGAACTGCATC 58.820 47.826 0.00 0.00 29.53 3.91
1641 2648 4.180057 CTCTACTGAAGTGAACTGCATCC 58.820 47.826 0.00 0.00 29.53 3.51
1642 2649 3.834813 TCTACTGAAGTGAACTGCATCCT 59.165 43.478 0.00 0.00 29.53 3.24
1643 2650 2.775890 ACTGAAGTGAACTGCATCCTG 58.224 47.619 0.00 0.00 29.53 3.86
1644 2651 2.369860 ACTGAAGTGAACTGCATCCTGA 59.630 45.455 0.00 0.00 29.53 3.86
1645 2652 3.008813 ACTGAAGTGAACTGCATCCTGAT 59.991 43.478 0.00 0.00 29.53 2.90
1779 2790 8.364894 AGCATTTTAAGTTACCCTTGTTTTAGG 58.635 33.333 0.00 0.00 34.46 2.69
1781 2792 9.908152 CATTTTAAGTTACCCTTGTTTTAGGAG 57.092 33.333 0.00 0.00 37.50 3.69
1782 2793 8.467963 TTTTAAGTTACCCTTGTTTTAGGAGG 57.532 34.615 0.00 0.00 37.50 4.30
1799 2810 8.443953 TTTAGGAGGATTTACTACTCGTAGTC 57.556 38.462 12.62 0.00 44.58 2.59
1800 2811 5.999044 AGGAGGATTTACTACTCGTAGTCA 58.001 41.667 12.62 0.26 44.58 3.41
1801 2812 6.056884 AGGAGGATTTACTACTCGTAGTCAG 58.943 44.000 12.62 0.00 44.58 3.51
1944 2957 5.106317 TGGTCGGAAACAAATCAGATTTAGC 60.106 40.000 8.12 2.05 0.00 3.09
2064 3077 3.471399 GGTAACTCGAAGCACCGC 58.529 61.111 0.00 0.00 0.00 5.68
2091 3104 2.486504 CAGCGGCGCACAATTCAT 59.513 55.556 35.02 7.53 0.00 2.57
2092 3105 1.153978 CAGCGGCGCACAATTCATT 60.154 52.632 35.02 6.66 0.00 2.57
2093 3106 1.135699 CAGCGGCGCACAATTCATTC 61.136 55.000 35.02 0.00 0.00 2.67
2107 3120 0.817013 TCATTCGCCATGGCCTTTTC 59.183 50.000 30.79 2.65 37.98 2.29
2110 3123 0.965363 TTCGCCATGGCCTTTTCCTC 60.965 55.000 30.79 0.24 37.98 3.71
2162 3176 0.518636 CAAAGCTCGTCCATGGTGTG 59.481 55.000 12.58 7.93 0.00 3.82
2164 3178 3.127533 GCTCGTCCATGGTGTGCC 61.128 66.667 12.58 0.00 0.00 5.01
2181 3195 0.915364 GCCAGAAGATCCAGGAAGGT 59.085 55.000 0.00 0.00 39.02 3.50
2187 3201 1.302907 AGATCCAGGAAGGTGCCATT 58.697 50.000 0.00 0.00 39.02 3.16
2193 3207 2.022195 CAGGAAGGTGCCATTGATCTG 58.978 52.381 0.00 0.00 0.00 2.90
2207 3221 1.002430 TGATCTGTCCAAGGTGAGTGC 59.998 52.381 0.00 0.00 0.00 4.40
2209 3223 1.669115 CTGTCCAAGGTGAGTGCCG 60.669 63.158 0.00 0.00 0.00 5.69
2210 3224 2.383245 CTGTCCAAGGTGAGTGCCGT 62.383 60.000 0.00 0.00 0.00 5.68
2211 3225 1.116536 TGTCCAAGGTGAGTGCCGTA 61.117 55.000 0.00 0.00 0.00 4.02
2212 3226 0.669625 GTCCAAGGTGAGTGCCGTAC 60.670 60.000 0.00 0.00 0.00 3.67
2213 3227 0.830444 TCCAAGGTGAGTGCCGTACT 60.830 55.000 0.00 0.00 44.02 2.73
2214 3228 0.670546 CCAAGGTGAGTGCCGTACTG 60.671 60.000 0.00 0.00 40.53 2.74
2215 3229 1.004918 AAGGTGAGTGCCGTACTGC 60.005 57.895 1.80 1.80 40.53 4.40
2217 3231 1.079127 GGTGAGTGCCGTACTGCAT 60.079 57.895 15.30 4.77 44.30 3.96
2219 3233 1.404986 GGTGAGTGCCGTACTGCATTA 60.405 52.381 15.30 2.51 44.30 1.90
2220 3234 2.550978 GTGAGTGCCGTACTGCATTAT 58.449 47.619 15.30 4.92 44.30 1.28
2221 3235 2.285220 GTGAGTGCCGTACTGCATTATG 59.715 50.000 15.30 0.00 44.30 1.90
2222 3236 2.093711 TGAGTGCCGTACTGCATTATGT 60.094 45.455 15.30 0.00 44.30 2.29
2223 3237 2.936498 GAGTGCCGTACTGCATTATGTT 59.064 45.455 15.30 0.00 44.30 2.71
2224 3238 2.677836 AGTGCCGTACTGCATTATGTTG 59.322 45.455 15.30 0.00 44.30 3.33
2225 3239 2.418628 GTGCCGTACTGCATTATGTTGT 59.581 45.455 15.30 0.00 44.30 3.32
2226 3240 2.675844 TGCCGTACTGCATTATGTTGTC 59.324 45.455 7.99 0.00 36.04 3.18
2227 3241 2.936498 GCCGTACTGCATTATGTTGTCT 59.064 45.455 4.19 0.00 0.00 3.41
2228 3242 3.374058 GCCGTACTGCATTATGTTGTCTT 59.626 43.478 4.19 0.00 0.00 3.01
2229 3243 4.727734 GCCGTACTGCATTATGTTGTCTTG 60.728 45.833 4.19 0.00 0.00 3.02
2230 3244 4.391830 CCGTACTGCATTATGTTGTCTTGT 59.608 41.667 2.97 0.00 0.00 3.16
2231 3245 5.579119 CCGTACTGCATTATGTTGTCTTGTA 59.421 40.000 2.97 0.00 0.00 2.41
2232 3246 6.257849 CCGTACTGCATTATGTTGTCTTGTAT 59.742 38.462 2.97 0.00 0.00 2.29
2233 3247 7.201609 CCGTACTGCATTATGTTGTCTTGTATT 60.202 37.037 2.97 0.00 0.00 1.89
2260 3274 2.493547 GCAGGTGCTTATGGGGTTC 58.506 57.895 0.00 0.00 38.21 3.62
2265 3279 3.099141 AGGTGCTTATGGGGTTCATTTG 58.901 45.455 0.00 0.00 37.30 2.32
2266 3280 3.096092 GGTGCTTATGGGGTTCATTTGA 58.904 45.455 0.00 0.00 37.30 2.69
2267 3281 3.119137 GGTGCTTATGGGGTTCATTTGAC 60.119 47.826 0.00 0.00 37.30 3.18
2268 3282 3.096092 TGCTTATGGGGTTCATTTGACC 58.904 45.455 0.00 0.00 37.30 4.02
2270 3284 3.706086 GCTTATGGGGTTCATTTGACCAT 59.294 43.478 0.00 0.00 43.79 3.55
2288 3330 3.953612 ACCATTGTTGTTTCTCTTGCAGA 59.046 39.130 0.00 0.00 0.00 4.26
2325 3367 2.196749 CGGAGGTGATGATTTCAGTCG 58.803 52.381 0.00 0.00 34.17 4.18
2326 3368 2.417379 CGGAGGTGATGATTTCAGTCGT 60.417 50.000 0.00 0.00 34.17 4.34
2329 3371 4.109050 GAGGTGATGATTTCAGTCGTCTC 58.891 47.826 0.00 0.00 35.60 3.36
2332 3374 3.788694 GTGATGATTTCAGTCGTCTCGAG 59.211 47.826 5.93 5.93 36.23 4.04
2333 3375 2.264109 TGATTTCAGTCGTCTCGAGC 57.736 50.000 7.81 1.89 36.23 5.03
2334 3376 1.135373 TGATTTCAGTCGTCTCGAGCC 60.135 52.381 7.81 0.00 36.23 4.70
2335 3377 1.133407 GATTTCAGTCGTCTCGAGCCT 59.867 52.381 7.81 0.00 36.23 4.58
2336 3378 0.522180 TTTCAGTCGTCTCGAGCCTC 59.478 55.000 7.81 0.00 36.23 4.70
2337 3379 0.321741 TTCAGTCGTCTCGAGCCTCT 60.322 55.000 7.81 0.55 36.23 3.69
2338 3380 1.021920 TCAGTCGTCTCGAGCCTCTG 61.022 60.000 7.81 12.84 36.23 3.35
2339 3381 2.101380 GTCGTCTCGAGCCTCTGC 59.899 66.667 7.81 0.00 36.23 4.26
2341 3383 3.137459 CGTCTCGAGCCTCTGCCT 61.137 66.667 7.81 0.00 38.69 4.75
2348 3393 2.757917 AGCCTCTGCCTCCGTCTC 60.758 66.667 0.00 0.00 38.69 3.36
2355 3400 3.894947 GCCTCCGTCTCGAGCCTC 61.895 72.222 7.81 0.00 0.00 4.70
2358 3403 4.405671 TCCGTCTCGAGCCTCCGT 62.406 66.667 7.81 0.00 0.00 4.69
2367 3412 4.385405 AGCCTCCGTCTGCTGCAC 62.385 66.667 0.00 0.00 36.23 4.57
2380 3432 2.691571 CTGCACCAGCTGAGCATAG 58.308 57.895 26.66 16.29 41.71 2.23
2391 3443 1.135915 CTGAGCATAGCTTGGACGACT 59.864 52.381 0.00 0.00 39.88 4.18
2406 3458 0.095589 CGACTCAGTTCCGTCTCTCG 59.904 60.000 0.00 0.00 39.52 4.04
2445 3497 5.483685 AGTGCAAATCAGTAGTAACTCCA 57.516 39.130 0.00 0.00 31.97 3.86
2446 3498 6.054860 AGTGCAAATCAGTAGTAACTCCAT 57.945 37.500 0.00 0.00 31.97 3.41
2447 3499 5.877012 AGTGCAAATCAGTAGTAACTCCATG 59.123 40.000 0.00 0.00 31.97 3.66
2448 3500 4.635765 TGCAAATCAGTAGTAACTCCATGC 59.364 41.667 0.00 0.00 31.97 4.06
2449 3501 4.878397 GCAAATCAGTAGTAACTCCATGCT 59.122 41.667 0.00 0.00 31.97 3.79
2450 3502 5.355350 GCAAATCAGTAGTAACTCCATGCTT 59.645 40.000 0.00 0.00 31.97 3.91
2451 3503 6.127897 GCAAATCAGTAGTAACTCCATGCTTT 60.128 38.462 0.00 0.00 31.97 3.51
2452 3504 7.467623 CAAATCAGTAGTAACTCCATGCTTTC 58.532 38.462 0.00 0.00 31.97 2.62
2453 3505 5.738619 TCAGTAGTAACTCCATGCTTTCA 57.261 39.130 0.00 0.00 31.97 2.69
2454 3506 6.109156 TCAGTAGTAACTCCATGCTTTCAA 57.891 37.500 0.00 0.00 31.97 2.69
2455 3507 5.932303 TCAGTAGTAACTCCATGCTTTCAAC 59.068 40.000 0.00 0.00 31.97 3.18
2456 3508 5.122396 CAGTAGTAACTCCATGCTTTCAACC 59.878 44.000 0.00 0.00 31.97 3.77
2457 3509 4.373156 AGTAACTCCATGCTTTCAACCT 57.627 40.909 0.00 0.00 0.00 3.50
2458 3510 4.327680 AGTAACTCCATGCTTTCAACCTC 58.672 43.478 0.00 0.00 0.00 3.85
2459 3511 1.813513 ACTCCATGCTTTCAACCTCG 58.186 50.000 0.00 0.00 0.00 4.63
2460 3512 1.347707 ACTCCATGCTTTCAACCTCGA 59.652 47.619 0.00 0.00 0.00 4.04
2461 3513 2.005451 CTCCATGCTTTCAACCTCGAG 58.995 52.381 5.13 5.13 0.00 4.04
2462 3514 0.449388 CCATGCTTTCAACCTCGAGC 59.551 55.000 6.99 0.00 35.74 5.03
2464 3516 3.631453 TGCTTTCAACCTCGAGCAT 57.369 47.368 6.99 0.00 39.97 3.79
2465 3517 2.760634 TGCTTTCAACCTCGAGCATA 57.239 45.000 6.99 0.00 39.97 3.14
2466 3518 3.266510 TGCTTTCAACCTCGAGCATAT 57.733 42.857 6.99 0.00 39.97 1.78
2467 3519 4.400529 TGCTTTCAACCTCGAGCATATA 57.599 40.909 6.99 0.00 39.97 0.86
2468 3520 4.371786 TGCTTTCAACCTCGAGCATATAG 58.628 43.478 6.99 0.82 39.97 1.31
2469 3521 3.185391 GCTTTCAACCTCGAGCATATAGC 59.815 47.826 6.99 7.35 46.19 2.97
2506 3559 6.908825 TCACTTGGCAGTTAAAATGATGTAC 58.091 36.000 0.00 0.00 0.00 2.90
2508 3561 7.176515 TCACTTGGCAGTTAAAATGATGTACAT 59.823 33.333 8.43 8.43 41.45 2.29
2522 3575 8.581057 AATGATGTACATCGTTTCATAGTCTC 57.419 34.615 29.54 6.89 42.61 3.36
2526 3579 6.552629 TGTACATCGTTTCATAGTCTCTCAC 58.447 40.000 0.00 0.00 0.00 3.51
2528 3581 6.274157 ACATCGTTTCATAGTCTCTCACTT 57.726 37.500 0.00 0.00 36.43 3.16
2529 3582 6.096036 ACATCGTTTCATAGTCTCTCACTTG 58.904 40.000 0.00 0.00 36.43 3.16
2530 3583 5.707242 TCGTTTCATAGTCTCTCACTTGT 57.293 39.130 0.00 0.00 36.43 3.16
2531 3584 5.700846 TCGTTTCATAGTCTCTCACTTGTC 58.299 41.667 0.00 0.00 36.43 3.18
2532 3585 5.473846 TCGTTTCATAGTCTCTCACTTGTCT 59.526 40.000 0.00 0.00 36.43 3.41
2533 3586 6.016192 TCGTTTCATAGTCTCTCACTTGTCTT 60.016 38.462 0.00 0.00 36.43 3.01
2534 3587 6.088749 CGTTTCATAGTCTCTCACTTGTCTTG 59.911 42.308 0.00 0.00 36.43 3.02
2535 3588 6.656632 TTCATAGTCTCTCACTTGTCTTGT 57.343 37.500 0.00 0.00 36.43 3.16
2536 3589 6.656632 TCATAGTCTCTCACTTGTCTTGTT 57.343 37.500 0.00 0.00 36.43 2.83
2537 3590 6.682746 TCATAGTCTCTCACTTGTCTTGTTC 58.317 40.000 0.00 0.00 36.43 3.18
2538 3591 6.491745 TCATAGTCTCTCACTTGTCTTGTTCT 59.508 38.462 0.00 0.00 36.43 3.01
2539 3592 5.195001 AGTCTCTCACTTGTCTTGTTCTC 57.805 43.478 0.00 0.00 26.56 2.87
2540 3593 4.038642 AGTCTCTCACTTGTCTTGTTCTCC 59.961 45.833 0.00 0.00 26.56 3.71
2541 3594 3.322254 TCTCTCACTTGTCTTGTTCTCCC 59.678 47.826 0.00 0.00 0.00 4.30
2542 3595 2.035961 TCTCACTTGTCTTGTTCTCCCG 59.964 50.000 0.00 0.00 0.00 5.14
2543 3596 2.035961 CTCACTTGTCTTGTTCTCCCGA 59.964 50.000 0.00 0.00 0.00 5.14
2544 3597 2.432874 TCACTTGTCTTGTTCTCCCGAA 59.567 45.455 0.00 0.00 0.00 4.30
2545 3598 2.802816 CACTTGTCTTGTTCTCCCGAAG 59.197 50.000 0.00 0.00 0.00 3.79
2546 3599 2.434702 ACTTGTCTTGTTCTCCCGAAGT 59.565 45.455 0.00 0.00 0.00 3.01
2547 3600 3.118371 ACTTGTCTTGTTCTCCCGAAGTT 60.118 43.478 0.00 0.00 0.00 2.66
2548 3601 4.100498 ACTTGTCTTGTTCTCCCGAAGTTA 59.900 41.667 0.00 0.00 0.00 2.24
2552 3605 6.942976 TGTCTTGTTCTCCCGAAGTTATATT 58.057 36.000 0.00 0.00 0.00 1.28
2635 3692 9.801873 AGAACGAAAATCAGAAATTTCTTTTGA 57.198 25.926 18.16 13.61 34.74 2.69
2637 3694 8.352752 ACGAAAATCAGAAATTTCTTTTGACC 57.647 30.769 18.16 9.27 34.74 4.02
2640 3697 6.745794 AATCAGAAATTTCTTTTGACCCCA 57.254 33.333 18.16 0.00 34.74 4.96
2718 3775 8.074370 AGTTTTAAAATTTCTAGAGAACACGCC 58.926 33.333 3.52 0.00 33.13 5.68
2719 3776 6.490566 TTAAAATTTCTAGAGAACACGCCC 57.509 37.500 0.00 0.00 33.13 6.13
2720 3777 3.695830 AATTTCTAGAGAACACGCCCA 57.304 42.857 0.00 0.00 33.13 5.36
2721 3778 2.450609 TTTCTAGAGAACACGCCCAC 57.549 50.000 0.00 0.00 33.13 4.61
2722 3779 1.334160 TTCTAGAGAACACGCCCACA 58.666 50.000 0.00 0.00 0.00 4.17
2723 3780 0.601558 TCTAGAGAACACGCCCACAC 59.398 55.000 0.00 0.00 0.00 3.82
2724 3781 0.317160 CTAGAGAACACGCCCACACA 59.683 55.000 0.00 0.00 0.00 3.72
2725 3782 0.317160 TAGAGAACACGCCCACACAG 59.683 55.000 0.00 0.00 0.00 3.66
2726 3783 1.069090 GAGAACACGCCCACACAGA 59.931 57.895 0.00 0.00 0.00 3.41
2727 3784 1.222115 GAGAACACGCCCACACAGAC 61.222 60.000 0.00 0.00 0.00 3.51
2728 3785 1.522806 GAACACGCCCACACAGACA 60.523 57.895 0.00 0.00 0.00 3.41
2729 3786 0.884704 GAACACGCCCACACAGACAT 60.885 55.000 0.00 0.00 0.00 3.06
2730 3787 0.394938 AACACGCCCACACAGACATA 59.605 50.000 0.00 0.00 0.00 2.29
2731 3788 0.613260 ACACGCCCACACAGACATAT 59.387 50.000 0.00 0.00 0.00 1.78
2732 3789 1.003118 ACACGCCCACACAGACATATT 59.997 47.619 0.00 0.00 0.00 1.28
2733 3790 1.665679 CACGCCCACACAGACATATTC 59.334 52.381 0.00 0.00 0.00 1.75
2734 3791 1.299541 CGCCCACACAGACATATTCC 58.700 55.000 0.00 0.00 0.00 3.01
2735 3792 1.680338 GCCCACACAGACATATTCCC 58.320 55.000 0.00 0.00 0.00 3.97
2736 3793 1.212935 GCCCACACAGACATATTCCCT 59.787 52.381 0.00 0.00 0.00 4.20
2737 3794 2.746472 GCCCACACAGACATATTCCCTC 60.746 54.545 0.00 0.00 0.00 4.30
2738 3795 2.158755 CCCACACAGACATATTCCCTCC 60.159 54.545 0.00 0.00 0.00 4.30
2739 3796 2.483714 CCACACAGACATATTCCCTCCG 60.484 54.545 0.00 0.00 0.00 4.63
2740 3797 2.168521 CACACAGACATATTCCCTCCGT 59.831 50.000 0.00 0.00 0.00 4.69
2741 3798 2.431057 ACACAGACATATTCCCTCCGTC 59.569 50.000 0.00 0.00 0.00 4.79
2742 3799 2.040178 ACAGACATATTCCCTCCGTCC 58.960 52.381 0.00 0.00 0.00 4.79
2743 3800 1.000163 CAGACATATTCCCTCCGTCCG 60.000 57.143 0.00 0.00 0.00 4.79
2744 3801 0.317479 GACATATTCCCTCCGTCCGG 59.683 60.000 0.00 0.00 0.00 5.14
2745 3802 0.105862 ACATATTCCCTCCGTCCGGA 60.106 55.000 0.00 0.00 42.90 5.14
2746 3803 1.045407 CATATTCCCTCCGTCCGGAA 58.955 55.000 5.23 0.00 44.66 4.30
2747 3804 1.414919 CATATTCCCTCCGTCCGGAAA 59.585 52.381 5.23 1.92 44.66 3.13
2748 3805 1.797320 TATTCCCTCCGTCCGGAAAT 58.203 50.000 5.23 9.21 44.66 2.17
2749 3806 1.797320 ATTCCCTCCGTCCGGAAATA 58.203 50.000 5.23 0.00 44.66 1.40
2750 3807 0.826062 TTCCCTCCGTCCGGAAATAC 59.174 55.000 5.23 0.00 44.66 1.89
2751 3808 1.044790 TCCCTCCGTCCGGAAATACC 61.045 60.000 5.23 0.00 44.66 2.73
2752 3809 1.047034 CCCTCCGTCCGGAAATACCT 61.047 60.000 5.23 0.00 44.66 3.08
2753 3810 1.696063 CCTCCGTCCGGAAATACCTA 58.304 55.000 5.23 0.00 44.66 3.08
2754 3811 2.245582 CCTCCGTCCGGAAATACCTAT 58.754 52.381 5.23 0.00 44.66 2.57
2755 3812 2.230750 CCTCCGTCCGGAAATACCTATC 59.769 54.545 5.23 0.00 44.66 2.08
2756 3813 2.889045 CTCCGTCCGGAAATACCTATCA 59.111 50.000 5.23 0.00 44.66 2.15
2757 3814 3.503365 TCCGTCCGGAAATACCTATCAT 58.497 45.455 5.23 0.00 42.05 2.45
2758 3815 4.665451 TCCGTCCGGAAATACCTATCATA 58.335 43.478 5.23 0.00 42.05 2.15
2759 3816 4.703575 TCCGTCCGGAAATACCTATCATAG 59.296 45.833 5.23 0.00 42.05 2.23
2760 3817 4.703575 CCGTCCGGAAATACCTATCATAGA 59.296 45.833 5.23 0.00 37.50 1.98
2761 3818 5.184479 CCGTCCGGAAATACCTATCATAGAA 59.816 44.000 5.23 0.00 37.50 2.10
2762 3819 6.294899 CCGTCCGGAAATACCTATCATAGAAA 60.295 42.308 5.23 0.00 37.50 2.52
2763 3820 7.321153 CGTCCGGAAATACCTATCATAGAAAT 58.679 38.462 5.23 0.00 36.31 2.17
2764 3821 7.275779 CGTCCGGAAATACCTATCATAGAAATG 59.724 40.741 5.23 0.00 36.31 2.32
2765 3822 7.549488 GTCCGGAAATACCTATCATAGAAATGG 59.451 40.741 5.23 0.00 36.31 3.16
2766 3823 7.456585 TCCGGAAATACCTATCATAGAAATGGA 59.543 37.037 0.00 0.00 36.31 3.41
2767 3824 8.267894 CCGGAAATACCTATCATAGAAATGGAT 58.732 37.037 0.00 0.00 36.31 3.41
2768 3825 9.102757 CGGAAATACCTATCATAGAAATGGATG 57.897 37.037 0.00 0.00 36.31 3.51
2769 3826 9.965902 GGAAATACCTATCATAGAAATGGATGT 57.034 33.333 0.00 0.00 33.06 3.06
2817 3874 9.874205 AAATACATCCACTTTTATCCATTTGTG 57.126 29.630 0.00 0.00 0.00 3.33
2818 3875 6.284891 ACATCCACTTTTATCCATTTGTGG 57.715 37.500 0.00 0.00 44.31 4.17
2820 3877 5.975693 TCCACTTTTATCCATTTGTGGAC 57.024 39.130 8.36 0.00 45.86 4.02
2821 3878 5.389520 TCCACTTTTATCCATTTGTGGACA 58.610 37.500 8.36 0.00 45.86 4.02
2822 3879 5.835819 TCCACTTTTATCCATTTGTGGACAA 59.164 36.000 8.36 0.00 45.86 3.18
2823 3880 6.015519 TCCACTTTTATCCATTTGTGGACAAG 60.016 38.462 8.36 5.55 45.86 3.16
2824 3881 6.239289 CCACTTTTATCCATTTGTGGACAAGT 60.239 38.462 4.14 6.11 45.37 3.16
2825 3882 7.040062 CCACTTTTATCCATTTGTGGACAAGTA 60.040 37.037 13.77 0.00 45.37 2.24
2826 3883 8.356657 CACTTTTATCCATTTGTGGACAAGTAA 58.643 33.333 13.77 2.74 41.33 2.24
2827 3884 9.088987 ACTTTTATCCATTTGTGGACAAGTAAT 57.911 29.630 13.04 0.00 41.33 1.89
2828 3885 9.927668 CTTTTATCCATTTGTGGACAAGTAATT 57.072 29.630 0.00 0.00 41.33 1.40
2829 3886 9.921637 TTTTATCCATTTGTGGACAAGTAATTC 57.078 29.630 0.00 0.00 41.33 2.17
2830 3887 5.975693 TCCATTTGTGGACAAGTAATTCC 57.024 39.130 0.00 0.00 37.15 3.01
2831 3888 4.457603 TCCATTTGTGGACAAGTAATTCCG 59.542 41.667 0.00 0.00 37.15 4.30
2832 3889 4.380444 CCATTTGTGGACAAGTAATTCCGG 60.380 45.833 0.00 0.00 37.15 5.14
2833 3890 3.773418 TTGTGGACAAGTAATTCCGGA 57.227 42.857 0.00 0.00 34.24 5.14
2834 3891 3.048337 TGTGGACAAGTAATTCCGGAC 57.952 47.619 1.83 0.00 34.24 4.79
2835 3892 2.369203 TGTGGACAAGTAATTCCGGACA 59.631 45.455 1.83 0.00 34.24 4.02
2836 3893 3.000727 GTGGACAAGTAATTCCGGACAG 58.999 50.000 1.83 0.00 34.24 3.51
2837 3894 2.901192 TGGACAAGTAATTCCGGACAGA 59.099 45.455 1.83 0.00 34.24 3.41
2838 3895 3.056107 TGGACAAGTAATTCCGGACAGAG 60.056 47.826 1.83 0.00 34.24 3.35
2839 3896 3.522553 GACAAGTAATTCCGGACAGAGG 58.477 50.000 1.83 0.00 0.00 3.69
2840 3897 2.236395 ACAAGTAATTCCGGACAGAGGG 59.764 50.000 1.83 0.00 0.00 4.30
2841 3898 2.500098 CAAGTAATTCCGGACAGAGGGA 59.500 50.000 1.83 0.00 0.00 4.20
2842 3899 2.389715 AGTAATTCCGGACAGAGGGAG 58.610 52.381 1.83 0.00 33.01 4.30
2843 3900 2.108970 GTAATTCCGGACAGAGGGAGT 58.891 52.381 1.83 0.00 33.01 3.85
2844 3901 2.544844 AATTCCGGACAGAGGGAGTA 57.455 50.000 1.83 0.00 33.01 2.59
2845 3902 2.777459 ATTCCGGACAGAGGGAGTAT 57.223 50.000 1.83 0.00 33.01 2.12
2846 3903 2.544844 TTCCGGACAGAGGGAGTATT 57.455 50.000 1.83 0.00 33.01 1.89
2847 3904 3.675348 TTCCGGACAGAGGGAGTATTA 57.325 47.619 1.83 0.00 33.01 0.98
2848 3905 3.675348 TCCGGACAGAGGGAGTATTAA 57.325 47.619 0.00 0.00 0.00 1.40
2849 3906 4.194678 TCCGGACAGAGGGAGTATTAAT 57.805 45.455 0.00 0.00 0.00 1.40
2850 3907 3.895656 TCCGGACAGAGGGAGTATTAATG 59.104 47.826 0.00 0.00 0.00 1.90
2851 3908 3.641906 CCGGACAGAGGGAGTATTAATGT 59.358 47.826 0.00 0.00 0.00 2.71
2852 3909 4.831155 CCGGACAGAGGGAGTATTAATGTA 59.169 45.833 0.00 0.00 0.00 2.29
2853 3910 5.480772 CCGGACAGAGGGAGTATTAATGTAT 59.519 44.000 0.00 0.00 0.00 2.29
2854 3911 6.662234 CCGGACAGAGGGAGTATTAATGTATA 59.338 42.308 0.00 0.00 0.00 1.47
2855 3912 7.362747 CCGGACAGAGGGAGTATTAATGTATAC 60.363 44.444 0.00 0.00 0.00 1.47
2856 3913 7.393796 CGGACAGAGGGAGTATTAATGTATACT 59.606 40.741 4.17 0.00 42.53 2.12
2884 3941 9.480053 CTTGTTTGTAAAGTTCCATGATGAAAT 57.520 29.630 0.00 0.00 0.00 2.17
2886 3943 9.906660 TGTTTGTAAAGTTCCATGATGAAATAC 57.093 29.630 0.00 0.00 0.00 1.89
2887 3944 9.906660 GTTTGTAAAGTTCCATGATGAAATACA 57.093 29.630 0.00 0.00 0.00 2.29
2893 3950 9.699410 AAAGTTCCATGATGAAATACATTAGGA 57.301 29.630 0.00 0.00 39.56 2.94
2894 3951 8.915057 AGTTCCATGATGAAATACATTAGGAG 57.085 34.615 0.00 0.00 39.56 3.69
2895 3952 8.497745 AGTTCCATGATGAAATACATTAGGAGT 58.502 33.333 0.00 0.00 39.56 3.85
2896 3953 8.778358 GTTCCATGATGAAATACATTAGGAGTC 58.222 37.037 0.00 0.00 39.56 3.36
2897 3954 7.453393 TCCATGATGAAATACATTAGGAGTCC 58.547 38.462 0.00 0.00 39.56 3.85
2911 3988 7.072454 ACATTAGGAGTCCCACACATACATATT 59.928 37.037 5.25 0.00 33.88 1.28
2961 4038 8.760103 TTCATGATGAAATACATTTTGGTGTG 57.240 30.769 5.21 0.00 39.56 3.82
2962 4039 8.120140 TCATGATGAAATACATTTTGGTGTGA 57.880 30.769 0.00 0.00 39.56 3.58
3007 4109 6.293790 GGCCTTTTGTAAAAACTAGACGACAT 60.294 38.462 0.00 0.00 0.00 3.06
3014 4116 0.797249 AACTAGACGACATCGCACGC 60.797 55.000 0.00 0.00 44.43 5.34
3018 4120 3.664410 GACGACATCGCACGCGTTG 62.664 63.158 10.22 18.18 44.43 4.10
3028 4130 2.661866 ACGCGTTGCTGTGAGGAC 60.662 61.111 5.58 0.00 0.00 3.85
3029 4131 2.356313 CGCGTTGCTGTGAGGACT 60.356 61.111 0.00 0.00 0.00 3.85
3030 4132 1.956170 CGCGTTGCTGTGAGGACTT 60.956 57.895 0.00 0.00 0.00 3.01
3031 4133 1.498865 CGCGTTGCTGTGAGGACTTT 61.499 55.000 0.00 0.00 0.00 2.66
3041 4178 5.767665 TGCTGTGAGGACTTTTAAGCATAAA 59.232 36.000 0.00 0.00 34.46 1.40
3075 4212 9.524106 TTGATCAAATAAATGATACTACGACGT 57.476 29.630 5.45 5.52 40.08 4.34
3092 5352 4.031028 CGACGTACGGTATTCTCGAATTT 58.969 43.478 21.06 0.00 38.46 1.82
3094 5354 4.031028 ACGTACGGTATTCTCGAATTTCG 58.969 43.478 21.06 12.54 42.10 3.46
3110 5370 8.933438 TCGAATTTCGAATTATTACATCATGC 57.067 30.769 18.56 0.00 46.90 4.06
3115 5375 9.616634 ATTTCGAATTATTACATCATGCACATC 57.383 29.630 0.00 0.00 0.00 3.06
3117 5377 8.152309 TCGAATTATTACATCATGCACATCAA 57.848 30.769 0.00 0.00 0.00 2.57
3119 5379 9.058424 CGAATTATTACATCATGCACATCAATC 57.942 33.333 0.00 0.00 0.00 2.67
3123 5383 3.893521 ACATCATGCACATCAATCTGGA 58.106 40.909 0.00 0.00 0.00 3.86
3124 5384 3.883489 ACATCATGCACATCAATCTGGAG 59.117 43.478 0.00 0.00 0.00 3.86
3125 5385 3.918294 TCATGCACATCAATCTGGAGA 57.082 42.857 0.00 0.00 0.00 3.71
3126 5386 3.805207 TCATGCACATCAATCTGGAGAG 58.195 45.455 0.00 0.00 0.00 3.20
3127 5387 2.034104 TGCACATCAATCTGGAGAGC 57.966 50.000 0.00 0.00 0.00 4.09
3129 5389 2.290450 TGCACATCAATCTGGAGAGCAA 60.290 45.455 0.00 0.00 0.00 3.91
3130 5390 2.751259 GCACATCAATCTGGAGAGCAAA 59.249 45.455 0.00 0.00 0.00 3.68
3131 5391 3.192001 GCACATCAATCTGGAGAGCAAAA 59.808 43.478 0.00 0.00 0.00 2.44
3133 5393 5.066893 GCACATCAATCTGGAGAGCAAAATA 59.933 40.000 0.00 0.00 0.00 1.40
3134 5394 6.238953 GCACATCAATCTGGAGAGCAAAATAT 60.239 38.462 0.00 0.00 0.00 1.28
3137 5397 8.411683 ACATCAATCTGGAGAGCAAAATATTTC 58.588 33.333 0.10 0.00 0.00 2.17
3139 5399 9.857656 ATCAATCTGGAGAGCAAAATATTTCTA 57.142 29.630 0.10 0.00 0.00 2.10
3141 5401 9.894783 CAATCTGGAGAGCAAAATATTTCTATG 57.105 33.333 0.10 0.00 0.00 2.23
3142 5402 9.638176 AATCTGGAGAGCAAAATATTTCTATGT 57.362 29.630 0.10 0.00 0.00 2.29
3240 5541 4.626604 GTGGCATTGTGGATGTTTAACATG 59.373 41.667 15.83 1.85 39.27 3.21
3241 5542 3.618150 GGCATTGTGGATGTTTAACATGC 59.382 43.478 20.14 20.14 45.62 4.06
3242 5543 4.497300 GCATTGTGGATGTTTAACATGCT 58.503 39.130 25.31 7.11 45.61 3.79
3243 5544 4.931002 GCATTGTGGATGTTTAACATGCTT 59.069 37.500 25.31 9.25 45.61 3.91
3244 5545 5.163933 GCATTGTGGATGTTTAACATGCTTG 60.164 40.000 25.31 18.46 45.61 4.01
3245 5546 4.517952 TGTGGATGTTTAACATGCTTGG 57.482 40.909 25.31 0.00 45.61 3.61
3246 5547 3.894427 TGTGGATGTTTAACATGCTTGGT 59.106 39.130 25.31 0.00 45.61 3.67
3247 5548 4.343526 TGTGGATGTTTAACATGCTTGGTT 59.656 37.500 25.31 0.00 45.61 3.67
3248 5549 4.685628 GTGGATGTTTAACATGCTTGGTTG 59.314 41.667 25.31 0.00 45.61 3.77
3249 5550 4.586421 TGGATGTTTAACATGCTTGGTTGA 59.414 37.500 25.31 5.49 45.61 3.18
3250 5551 5.245751 TGGATGTTTAACATGCTTGGTTGAT 59.754 36.000 25.31 0.00 45.61 2.57
3251 5552 5.577945 GGATGTTTAACATGCTTGGTTGATG 59.422 40.000 19.77 0.00 42.66 3.07
3252 5553 4.880759 TGTTTAACATGCTTGGTTGATGG 58.119 39.130 4.44 0.00 0.00 3.51
3253 5554 4.343526 TGTTTAACATGCTTGGTTGATGGT 59.656 37.500 4.44 0.00 0.00 3.55
3254 5555 4.517952 TTAACATGCTTGGTTGATGGTG 57.482 40.909 4.44 0.00 0.00 4.17
3255 5556 1.259609 ACATGCTTGGTTGATGGTGG 58.740 50.000 4.44 0.00 0.00 4.61
3256 5557 1.203038 ACATGCTTGGTTGATGGTGGA 60.203 47.619 4.44 0.00 0.00 4.02
3257 5558 1.475280 CATGCTTGGTTGATGGTGGAG 59.525 52.381 0.00 0.00 0.00 3.86
3258 5559 0.478072 TGCTTGGTTGATGGTGGAGT 59.522 50.000 0.00 0.00 0.00 3.85
3259 5560 1.702401 TGCTTGGTTGATGGTGGAGTA 59.298 47.619 0.00 0.00 0.00 2.59
3260 5561 2.308570 TGCTTGGTTGATGGTGGAGTAT 59.691 45.455 0.00 0.00 0.00 2.12
3261 5562 3.245229 TGCTTGGTTGATGGTGGAGTATT 60.245 43.478 0.00 0.00 0.00 1.89
3262 5563 4.018870 TGCTTGGTTGATGGTGGAGTATTA 60.019 41.667 0.00 0.00 0.00 0.98
3263 5564 4.947388 GCTTGGTTGATGGTGGAGTATTAA 59.053 41.667 0.00 0.00 0.00 1.40
3264 5565 5.163652 GCTTGGTTGATGGTGGAGTATTAAC 60.164 44.000 0.00 0.00 0.00 2.01
3265 5566 4.509616 TGGTTGATGGTGGAGTATTAACG 58.490 43.478 0.00 0.00 0.00 3.18
3266 5567 4.223255 TGGTTGATGGTGGAGTATTAACGA 59.777 41.667 0.00 0.00 0.00 3.85
3267 5568 5.180271 GGTTGATGGTGGAGTATTAACGAA 58.820 41.667 0.00 0.00 0.00 3.85
3268 5569 5.644636 GGTTGATGGTGGAGTATTAACGAAA 59.355 40.000 0.00 0.00 0.00 3.46
3269 5570 6.402875 GGTTGATGGTGGAGTATTAACGAAAC 60.403 42.308 0.00 0.00 0.00 2.78
3270 5571 5.795972 TGATGGTGGAGTATTAACGAAACA 58.204 37.500 0.00 0.00 0.00 2.83
3271 5572 5.640357 TGATGGTGGAGTATTAACGAAACAC 59.360 40.000 0.00 0.00 0.00 3.32
3272 5573 4.958509 TGGTGGAGTATTAACGAAACACA 58.041 39.130 0.00 0.00 0.00 3.72
3273 5574 4.992319 TGGTGGAGTATTAACGAAACACAG 59.008 41.667 0.00 0.00 0.00 3.66
3274 5575 4.142966 GGTGGAGTATTAACGAAACACAGC 60.143 45.833 0.00 0.00 0.00 4.40
3275 5576 4.449743 GTGGAGTATTAACGAAACACAGCA 59.550 41.667 0.00 0.00 0.00 4.41
3276 5577 5.049954 GTGGAGTATTAACGAAACACAGCAA 60.050 40.000 0.00 0.00 0.00 3.91
3277 5578 5.527951 TGGAGTATTAACGAAACACAGCAAA 59.472 36.000 0.00 0.00 0.00 3.68
3278 5579 6.038382 TGGAGTATTAACGAAACACAGCAAAA 59.962 34.615 0.00 0.00 0.00 2.44
3279 5580 7.081976 GGAGTATTAACGAAACACAGCAAAAT 58.918 34.615 0.00 0.00 0.00 1.82
3280 5581 8.231837 GGAGTATTAACGAAACACAGCAAAATA 58.768 33.333 0.00 0.00 0.00 1.40
3281 5582 8.944212 AGTATTAACGAAACACAGCAAAATAC 57.056 30.769 0.00 0.00 0.00 1.89
3282 5583 8.561212 AGTATTAACGAAACACAGCAAAATACA 58.439 29.630 0.00 0.00 32.39 2.29
3283 5584 7.851822 ATTAACGAAACACAGCAAAATACAG 57.148 32.000 0.00 0.00 0.00 2.74
3284 5585 4.893424 ACGAAACACAGCAAAATACAGT 57.107 36.364 0.00 0.00 0.00 3.55
3285 5586 5.994887 ACGAAACACAGCAAAATACAGTA 57.005 34.783 0.00 0.00 0.00 2.74
3286 5587 6.554334 ACGAAACACAGCAAAATACAGTAT 57.446 33.333 0.00 0.00 0.00 2.12
3287 5588 6.966021 ACGAAACACAGCAAAATACAGTATT 58.034 32.000 0.00 0.00 0.00 1.89
3288 5589 8.090250 ACGAAACACAGCAAAATACAGTATTA 57.910 30.769 6.22 0.00 0.00 0.98
3289 5590 8.726988 ACGAAACACAGCAAAATACAGTATTAT 58.273 29.630 6.22 0.00 0.00 1.28
3290 5591 9.210426 CGAAACACAGCAAAATACAGTATTATC 57.790 33.333 6.22 0.00 0.00 1.75
3291 5592 9.503427 GAAACACAGCAAAATACAGTATTATCC 57.497 33.333 6.22 0.00 0.00 2.59
3292 5593 8.574251 AACACAGCAAAATACAGTATTATCCA 57.426 30.769 6.22 0.00 0.00 3.41
3293 5594 8.213518 ACACAGCAAAATACAGTATTATCCAG 57.786 34.615 6.22 0.87 0.00 3.86
3294 5595 7.283127 ACACAGCAAAATACAGTATTATCCAGG 59.717 37.037 6.22 0.00 0.00 4.45
3295 5596 6.772716 ACAGCAAAATACAGTATTATCCAGGG 59.227 38.462 6.22 0.00 0.00 4.45
3296 5597 6.207417 CAGCAAAATACAGTATTATCCAGGGG 59.793 42.308 6.22 0.00 0.00 4.79
3297 5598 6.102615 AGCAAAATACAGTATTATCCAGGGGA 59.897 38.462 6.22 0.00 35.55 4.81
3298 5599 6.948309 GCAAAATACAGTATTATCCAGGGGAT 59.052 38.462 6.22 2.92 45.40 3.85
3299 5600 7.451566 GCAAAATACAGTATTATCCAGGGGATT 59.548 37.037 6.22 0.00 39.79 3.01
3303 5604 6.704056 ACAGTATTATCCAGGGGATTAAGG 57.296 41.667 2.64 0.00 39.79 2.69
3304 5605 6.399013 ACAGTATTATCCAGGGGATTAAGGA 58.601 40.000 2.64 0.00 39.79 3.36
3305 5606 6.855061 ACAGTATTATCCAGGGGATTAAGGAA 59.145 38.462 2.64 0.00 39.79 3.36
3306 5607 7.352522 ACAGTATTATCCAGGGGATTAAGGAAA 59.647 37.037 2.64 0.00 39.79 3.13
3307 5608 7.885399 CAGTATTATCCAGGGGATTAAGGAAAG 59.115 40.741 2.64 0.00 39.79 2.62
3308 5609 7.799583 AGTATTATCCAGGGGATTAAGGAAAGA 59.200 37.037 2.64 0.00 39.79 2.52
3309 5610 6.918951 TTATCCAGGGGATTAAGGAAAGAA 57.081 37.500 2.64 0.00 39.79 2.52
3310 5611 7.480222 TTATCCAGGGGATTAAGGAAAGAAT 57.520 36.000 2.64 0.00 39.79 2.40
3311 5612 8.590083 TTATCCAGGGGATTAAGGAAAGAATA 57.410 34.615 2.64 0.00 39.79 1.75
3312 5613 6.262056 TCCAGGGGATTAAGGAAAGAATAC 57.738 41.667 0.00 0.00 0.00 1.89
3313 5614 5.734140 TCCAGGGGATTAAGGAAAGAATACA 59.266 40.000 0.00 0.00 0.00 2.29
3314 5615 6.064717 CCAGGGGATTAAGGAAAGAATACAG 58.935 44.000 0.00 0.00 0.00 2.74
3315 5616 6.064717 CAGGGGATTAAGGAAAGAATACAGG 58.935 44.000 0.00 0.00 0.00 4.00
3316 5617 5.736616 AGGGGATTAAGGAAAGAATACAGGT 59.263 40.000 0.00 0.00 0.00 4.00
3317 5618 6.219772 AGGGGATTAAGGAAAGAATACAGGTT 59.780 38.462 0.00 0.00 0.00 3.50
3318 5619 6.321435 GGGGATTAAGGAAAGAATACAGGTTG 59.679 42.308 0.00 0.00 0.00 3.77
3319 5620 7.116736 GGGATTAAGGAAAGAATACAGGTTGA 58.883 38.462 0.00 0.00 0.00 3.18
3320 5621 7.780271 GGGATTAAGGAAAGAATACAGGTTGAT 59.220 37.037 0.00 0.00 0.00 2.57
3321 5622 9.847224 GGATTAAGGAAAGAATACAGGTTGATA 57.153 33.333 0.00 0.00 0.00 2.15
3349 5650 9.923143 ATATATATACACACACACTAAATGCGT 57.077 29.630 0.00 0.00 0.00 5.24
3351 5652 9.923143 ATATATACACACACACTAAATGCGTAT 57.077 29.630 0.00 0.00 0.00 3.06
3352 5653 6.978343 ATACACACACACTAAATGCGTATT 57.022 33.333 0.00 0.00 0.00 1.89
3353 5654 5.029650 ACACACACACTAAATGCGTATTG 57.970 39.130 0.00 0.00 0.00 1.90
3354 5655 4.752604 ACACACACACTAAATGCGTATTGA 59.247 37.500 0.00 0.00 0.00 2.57
3355 5656 5.237561 ACACACACACTAAATGCGTATTGAA 59.762 36.000 0.00 0.00 0.00 2.69
3356 5657 6.139435 CACACACACTAAATGCGTATTGAAA 58.861 36.000 0.00 0.00 0.00 2.69
3357 5658 6.086241 CACACACACTAAATGCGTATTGAAAC 59.914 38.462 0.00 0.00 0.00 2.78
3358 5659 6.139435 CACACACTAAATGCGTATTGAAACA 58.861 36.000 0.00 0.00 0.00 2.83
3359 5660 6.634837 CACACACTAAATGCGTATTGAAACAA 59.365 34.615 0.00 0.00 0.00 2.83
3360 5661 6.635239 ACACACTAAATGCGTATTGAAACAAC 59.365 34.615 0.00 0.00 0.00 3.32
3361 5662 6.087555 CACACTAAATGCGTATTGAAACAACC 59.912 38.462 0.00 0.00 0.00 3.77
3362 5663 6.146216 CACTAAATGCGTATTGAAACAACCA 58.854 36.000 0.00 0.00 0.00 3.67
3363 5664 6.305399 CACTAAATGCGTATTGAAACAACCAG 59.695 38.462 0.00 0.00 0.00 4.00
3364 5665 3.848272 ATGCGTATTGAAACAACCAGG 57.152 42.857 0.00 0.00 0.00 4.45
3365 5666 1.883275 TGCGTATTGAAACAACCAGGG 59.117 47.619 0.00 0.00 0.00 4.45
3366 5667 2.156098 GCGTATTGAAACAACCAGGGA 58.844 47.619 0.00 0.00 0.00 4.20
3367 5668 2.752903 GCGTATTGAAACAACCAGGGAT 59.247 45.455 0.00 0.00 0.00 3.85
3368 5669 3.192633 GCGTATTGAAACAACCAGGGATT 59.807 43.478 0.00 0.00 0.00 3.01
3369 5670 4.321675 GCGTATTGAAACAACCAGGGATTT 60.322 41.667 0.00 0.00 0.00 2.17
3370 5671 5.106078 GCGTATTGAAACAACCAGGGATTTA 60.106 40.000 0.00 0.00 0.00 1.40
3371 5672 6.551736 CGTATTGAAACAACCAGGGATTTAG 58.448 40.000 0.00 0.00 0.00 1.85
3372 5673 6.150474 CGTATTGAAACAACCAGGGATTTAGT 59.850 38.462 0.00 0.00 0.00 2.24
3373 5674 5.782893 TTGAAACAACCAGGGATTTAGTG 57.217 39.130 0.00 0.00 0.00 2.74
3374 5675 3.572255 TGAAACAACCAGGGATTTAGTGC 59.428 43.478 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
169 170 1.270625 CCCAGACTTTGTAGTTCGCCA 60.271 52.381 0.00 0.00 33.84 5.69
259 278 0.820871 TTTCGCAAAACCTGTTGGCT 59.179 45.000 5.70 0.00 36.63 4.75
339 358 3.395941 AGGTAGTTTCCATGATCATCCCC 59.604 47.826 4.86 0.00 0.00 4.81
437 457 0.523072 GCAAATCTTCTGCCAGCGAA 59.477 50.000 0.00 0.00 33.51 4.70
495 515 4.993584 GCCTCTATTGATGTCGTTGATCAT 59.006 41.667 0.00 0.00 29.96 2.45
512 532 1.220493 TGCTTCCCTCCATAGCCTCTA 59.780 52.381 0.00 0.00 34.03 2.43
602 635 0.247814 GAGCATCACCATTCAACGCG 60.248 55.000 3.53 3.53 33.17 6.01
625 659 5.300539 ACAGAAAGCGAAGATCTAGCTATGA 59.699 40.000 21.33 0.00 40.78 2.15
676 711 1.566211 TACAATTTGCATGGGGGTGG 58.434 50.000 0.00 0.00 0.00 4.61
755 791 1.440476 GGACGGATTCAGGTACGGG 59.560 63.158 0.00 0.00 0.00 5.28
829 865 2.048127 GGCGGGATATGAGGCGAC 60.048 66.667 0.00 0.00 0.00 5.19
859 895 4.659172 TGGGCTGCCGAGGGTTTG 62.659 66.667 13.40 0.00 0.00 2.93
860 896 4.660938 GTGGGCTGCCGAGGGTTT 62.661 66.667 13.40 0.00 0.00 3.27
869 905 4.451150 TGGATCGACGTGGGCTGC 62.451 66.667 0.00 0.00 0.00 5.25
870 906 2.509336 GTGGATCGACGTGGGCTG 60.509 66.667 0.00 0.00 0.00 4.85
871 907 3.771160 GGTGGATCGACGTGGGCT 61.771 66.667 0.00 0.00 0.00 5.19
874 910 4.129737 AGCGGTGGATCGACGTGG 62.130 66.667 0.00 0.00 0.00 4.94
875 911 2.579787 GAGCGGTGGATCGACGTG 60.580 66.667 0.00 0.00 0.00 4.49
876 912 2.337749 GATGAGCGGTGGATCGACGT 62.338 60.000 1.47 0.00 0.00 4.34
877 913 1.658717 GATGAGCGGTGGATCGACG 60.659 63.158 1.47 0.05 0.00 5.12
878 914 0.952280 TAGATGAGCGGTGGATCGAC 59.048 55.000 0.00 0.00 0.00 4.20
910 946 4.838486 GCGTGAGAGGCGAGGTCG 62.838 72.222 0.00 0.00 43.27 4.79
935 971 2.687805 CGGCGAACCAGAGACTCGA 61.688 63.158 0.00 0.00 34.52 4.04
997 1035 1.393539 CTTGTAAGCGAACGACATGGG 59.606 52.381 0.00 0.00 0.00 4.00
1129 1175 3.615110 CGAACCGATGATAGAATCAGGGG 60.615 52.174 11.99 9.68 43.53 4.79
1267 1318 0.942252 AAAACGAACAAGGTCTCGGC 59.058 50.000 0.00 0.00 39.38 5.54
1268 1319 2.870411 AGAAAAACGAACAAGGTCTCGG 59.130 45.455 0.00 0.00 39.38 4.63
1297 1348 5.050490 GCTAGCTAAGATTGATCGTCCAAA 58.950 41.667 7.70 0.00 0.00 3.28
1304 1355 9.874205 AGAGATTTATGCTAGCTAAGATTGATC 57.126 33.333 17.23 10.52 0.00 2.92
1345 1575 9.973246 GCAAATTCGTAACATGGTCATATATAG 57.027 33.333 0.00 0.00 0.00 1.31
1381 1615 0.681243 GGAGGCATGACTTCCCAACC 60.681 60.000 0.41 0.00 0.00 3.77
1471 1705 0.392863 TCTTGCCGATGGTGACCATG 60.393 55.000 23.89 13.77 45.26 3.66
1546 1780 8.529476 ACTAGTTTCGTCTGAAGGTTTATACAT 58.471 33.333 0.00 0.00 35.06 2.29
1547 1781 7.889469 ACTAGTTTCGTCTGAAGGTTTATACA 58.111 34.615 0.00 0.00 35.06 2.29
1548 1782 8.754230 AACTAGTTTCGTCTGAAGGTTTATAC 57.246 34.615 1.12 0.00 35.06 1.47
1571 2570 7.530010 TGAAAGCAGTAGAGAATGCATTTAAC 58.470 34.615 14.33 9.43 45.01 2.01
1641 2648 2.194212 GGCCTGCCTGCATCATCAG 61.194 63.158 0.00 0.00 0.00 2.90
1642 2649 2.124024 GGCCTGCCTGCATCATCA 60.124 61.111 0.00 0.00 0.00 3.07
1643 2650 2.124024 TGGCCTGCCTGCATCATC 60.124 61.111 9.97 0.00 36.94 2.92
1644 2651 2.123854 CTGGCCTGCCTGCATCAT 60.124 61.111 9.97 0.00 36.94 2.45
1645 2652 4.435970 CCTGGCCTGCCTGCATCA 62.436 66.667 9.97 0.00 36.94 3.07
1718 2725 4.500127 TGTACCTGGTGATGTCATAAACG 58.500 43.478 10.23 0.00 0.00 3.60
1779 2790 7.733402 ATCTGACTACGAGTAGTAAATCCTC 57.267 40.000 15.03 3.15 45.63 3.71
1781 2792 9.217278 TCATATCTGACTACGAGTAGTAAATCC 57.783 37.037 15.03 4.41 45.63 3.01
1798 2809 8.206867 AGAGGAAAAATCGACATTCATATCTGA 58.793 33.333 8.41 0.00 0.00 3.27
1799 2810 8.281194 CAGAGGAAAAATCGACATTCATATCTG 58.719 37.037 14.29 14.29 0.00 2.90
1800 2811 8.206867 TCAGAGGAAAAATCGACATTCATATCT 58.793 33.333 8.41 6.03 0.00 1.98
1801 2812 8.370493 TCAGAGGAAAAATCGACATTCATATC 57.630 34.615 8.41 4.39 0.00 1.63
1944 2957 3.408501 CTGACGGCTCGCCTCTGAG 62.409 68.421 6.35 0.00 39.05 3.35
2083 3096 0.461135 GGCCATGGCGAATGAATTGT 59.539 50.000 29.90 0.00 43.06 2.71
2091 3104 0.965363 GAGGAAAAGGCCATGGCGAA 60.965 55.000 29.90 0.00 43.06 4.70
2092 3105 1.378514 GAGGAAAAGGCCATGGCGA 60.379 57.895 29.90 0.00 43.06 5.54
2093 3106 1.678635 TGAGGAAAAGGCCATGGCG 60.679 57.895 29.90 0.00 43.06 5.69
2107 3120 5.105063 CGTGCATATATAGGTCATGTGAGG 58.895 45.833 0.00 0.00 0.00 3.86
2110 3123 4.244862 TGCGTGCATATATAGGTCATGTG 58.755 43.478 0.00 0.00 0.00 3.21
2141 3155 1.081892 CACCATGGACGAGCTTTGAG 58.918 55.000 21.47 0.00 0.00 3.02
2162 3176 0.915364 ACCTTCCTGGATCTTCTGGC 59.085 55.000 0.00 0.00 39.71 4.85
2164 3178 1.407989 GGCACCTTCCTGGATCTTCTG 60.408 57.143 0.00 0.00 39.71 3.02
2181 3195 1.355381 ACCTTGGACAGATCAATGGCA 59.645 47.619 0.00 0.00 0.00 4.92
2187 3201 1.002430 GCACTCACCTTGGACAGATCA 59.998 52.381 0.00 0.00 0.00 2.92
2193 3207 0.669625 GTACGGCACTCACCTTGGAC 60.670 60.000 0.00 0.00 0.00 4.02
2207 3221 4.391830 ACAAGACAACATAATGCAGTACGG 59.608 41.667 0.00 0.00 0.00 4.02
2209 3223 9.840427 AAAATACAAGACAACATAATGCAGTAC 57.160 29.630 0.00 0.00 0.00 2.73
2246 3260 3.119137 GGTCAAATGAACCCCATAAGCAC 60.119 47.826 0.00 0.00 34.45 4.40
2254 3268 3.070878 ACAACAATGGTCAAATGAACCCC 59.929 43.478 0.00 0.00 0.00 4.95
2260 3274 6.292488 GCAAGAGAAACAACAATGGTCAAATG 60.292 38.462 0.00 0.00 0.00 2.32
2265 3279 4.036734 TCTGCAAGAGAAACAACAATGGTC 59.963 41.667 0.00 0.00 38.67 4.02
2266 3280 3.953612 TCTGCAAGAGAAACAACAATGGT 59.046 39.130 0.00 0.00 38.67 3.55
2267 3281 4.572985 TCTGCAAGAGAAACAACAATGG 57.427 40.909 0.00 0.00 38.67 3.16
2288 3330 2.927580 CGGGCGTGACACCACTACT 61.928 63.158 0.00 0.00 41.06 2.57
2310 3352 3.759418 TCGAGACGACTGAAATCATCAC 58.241 45.455 0.00 0.00 33.47 3.06
2317 3359 0.522180 GAGGCTCGAGACGACTGAAA 59.478 55.000 18.75 0.00 0.00 2.69
2320 3362 1.427419 CAGAGGCTCGAGACGACTG 59.573 63.158 25.40 25.40 0.00 3.51
2321 3363 2.403378 GCAGAGGCTCGAGACGACT 61.403 63.158 18.75 15.76 36.96 4.18
2323 3365 3.134792 GGCAGAGGCTCGAGACGA 61.135 66.667 18.75 0.00 40.87 4.20
2324 3366 3.119709 GAGGCAGAGGCTCGAGACG 62.120 68.421 18.75 1.11 44.75 4.18
2325 3367 2.804856 GAGGCAGAGGCTCGAGAC 59.195 66.667 18.75 15.26 44.75 3.36
2332 3374 4.200283 CGAGACGGAGGCAGAGGC 62.200 72.222 0.00 0.00 40.13 4.70
2333 3375 2.438614 TCGAGACGGAGGCAGAGG 60.439 66.667 0.00 0.00 0.00 3.69
2334 3376 3.106552 CTCGAGACGGAGGCAGAG 58.893 66.667 6.58 0.00 0.00 3.35
2335 3377 3.134792 GCTCGAGACGGAGGCAGA 61.135 66.667 18.75 0.00 34.56 4.26
2339 3381 3.213402 GGAGGCTCGAGACGGAGG 61.213 72.222 18.75 0.00 34.56 4.30
2341 3383 4.405671 ACGGAGGCTCGAGACGGA 62.406 66.667 18.75 0.00 0.00 4.69
2380 3432 1.009389 CGGAACTGAGTCGTCCAAGC 61.009 60.000 4.37 0.00 0.00 4.01
2406 3458 9.937175 GATTTGCACTAGTATTAAACAAGATCC 57.063 33.333 0.00 0.00 0.00 3.36
2417 3469 9.804758 GAGTTACTACTGATTTGCACTAGTATT 57.195 33.333 0.00 0.00 32.24 1.89
2433 3485 5.013183 AGGTTGAAAGCATGGAGTTACTACT 59.987 40.000 0.00 0.00 37.31 2.57
2439 3491 2.154462 CGAGGTTGAAAGCATGGAGTT 58.846 47.619 0.00 0.00 0.00 3.01
2440 3492 1.347707 TCGAGGTTGAAAGCATGGAGT 59.652 47.619 0.00 0.00 0.00 3.85
2441 3493 2.005451 CTCGAGGTTGAAAGCATGGAG 58.995 52.381 3.91 0.00 0.00 3.86
2442 3494 1.945819 GCTCGAGGTTGAAAGCATGGA 60.946 52.381 15.58 0.00 34.86 3.41
2443 3495 0.449388 GCTCGAGGTTGAAAGCATGG 59.551 55.000 15.58 0.00 34.86 3.66
2444 3496 1.159285 TGCTCGAGGTTGAAAGCATG 58.841 50.000 15.58 0.00 39.69 4.06
2445 3497 3.631453 TGCTCGAGGTTGAAAGCAT 57.369 47.368 15.58 0.00 39.69 3.79
2447 3499 3.185391 GCTATATGCTCGAGGTTGAAAGC 59.815 47.826 15.58 0.00 38.95 3.51
2448 3500 3.743396 GGCTATATGCTCGAGGTTGAAAG 59.257 47.826 15.58 0.00 42.39 2.62
2449 3501 3.133901 TGGCTATATGCTCGAGGTTGAAA 59.866 43.478 15.58 0.00 42.39 2.69
2450 3502 2.698274 TGGCTATATGCTCGAGGTTGAA 59.302 45.455 15.58 0.00 42.39 2.69
2451 3503 2.316108 TGGCTATATGCTCGAGGTTGA 58.684 47.619 15.58 0.00 42.39 3.18
2452 3504 2.820059 TGGCTATATGCTCGAGGTTG 57.180 50.000 15.58 0.00 42.39 3.77
2453 3505 6.985653 ATATATGGCTATATGCTCGAGGTT 57.014 37.500 15.58 0.00 42.39 3.50
2454 3506 9.402320 CTATATATATGGCTATATGCTCGAGGT 57.598 37.037 15.58 0.00 42.39 3.85
2455 3507 9.620259 TCTATATATATGGCTATATGCTCGAGG 57.380 37.037 15.58 0.00 42.39 4.63
2477 3529 8.627403 CATCATTTTAACTGCCAAGTGATCTAT 58.373 33.333 0.00 0.00 36.51 1.98
2506 3559 6.096036 ACAAGTGAGAGACTATGAAACGATG 58.904 40.000 0.00 0.00 33.09 3.84
2508 3561 5.473846 AGACAAGTGAGAGACTATGAAACGA 59.526 40.000 0.00 0.00 33.09 3.85
2514 3567 6.686630 AGAACAAGACAAGTGAGAGACTATG 58.313 40.000 0.00 0.00 33.09 2.23
2516 3569 5.241949 GGAGAACAAGACAAGTGAGAGACTA 59.758 44.000 0.00 0.00 33.09 2.59
2522 3575 2.035961 TCGGGAGAACAAGACAAGTGAG 59.964 50.000 0.00 0.00 34.75 3.51
2526 3579 3.113260 ACTTCGGGAGAACAAGACAAG 57.887 47.619 0.00 0.00 45.39 3.16
2528 3581 4.884668 ATAACTTCGGGAGAACAAGACA 57.115 40.909 0.00 0.00 45.39 3.41
2529 3582 7.845066 AAATATAACTTCGGGAGAACAAGAC 57.155 36.000 0.00 0.00 45.39 3.01
2530 3583 8.857694 AAAAATATAACTTCGGGAGAACAAGA 57.142 30.769 0.00 0.00 45.39 3.02
2609 3666 9.801873 TCAAAAGAAATTTCTGATTTTCGTTCT 57.198 25.926 21.15 0.00 37.65 3.01
2610 3667 9.835315 GTCAAAAGAAATTTCTGATTTTCGTTC 57.165 29.630 21.15 5.36 37.65 3.95
2611 3668 8.817100 GGTCAAAAGAAATTTCTGATTTTCGTT 58.183 29.630 21.15 6.57 37.65 3.85
2612 3669 7.438160 GGGTCAAAAGAAATTTCTGATTTTCGT 59.562 33.333 21.15 0.17 37.65 3.85
2613 3670 7.095649 GGGGTCAAAAGAAATTTCTGATTTTCG 60.096 37.037 21.15 12.01 37.65 3.46
2614 3671 7.714813 TGGGGTCAAAAGAAATTTCTGATTTTC 59.285 33.333 21.15 12.70 37.65 2.29
2615 3672 7.572814 TGGGGTCAAAAGAAATTTCTGATTTT 58.427 30.769 21.15 14.58 37.65 1.82
2616 3673 7.135591 TGGGGTCAAAAGAAATTTCTGATTT 57.864 32.000 21.15 15.24 37.65 2.17
2617 3674 6.239686 CCTGGGGTCAAAAGAAATTTCTGATT 60.240 38.462 21.15 15.72 37.65 2.57
2618 3675 5.246883 CCTGGGGTCAAAAGAAATTTCTGAT 59.753 40.000 21.15 10.76 37.65 2.90
2619 3676 4.588528 CCTGGGGTCAAAAGAAATTTCTGA 59.411 41.667 21.15 12.32 37.65 3.27
2620 3677 4.800582 GCCTGGGGTCAAAAGAAATTTCTG 60.801 45.833 21.15 10.18 37.65 3.02
2621 3678 3.324846 GCCTGGGGTCAAAAGAAATTTCT 59.675 43.478 15.11 15.11 39.74 2.52
2628 3685 1.065410 TGGAGCCTGGGGTCAAAAGA 61.065 55.000 18.66 0.00 43.66 2.52
2635 3692 2.693864 CTCCATGGAGCCTGGGGT 60.694 66.667 28.45 0.00 35.31 4.95
2692 3749 8.074370 GGCGTGTTCTCTAGAAATTTTAAAACT 58.926 33.333 1.97 0.00 35.58 2.66
2693 3750 7.325338 GGGCGTGTTCTCTAGAAATTTTAAAAC 59.675 37.037 1.97 0.00 35.58 2.43
2694 3751 7.013464 TGGGCGTGTTCTCTAGAAATTTTAAAA 59.987 33.333 2.51 2.51 35.58 1.52
2695 3752 6.487331 TGGGCGTGTTCTCTAGAAATTTTAAA 59.513 34.615 0.00 0.00 35.58 1.52
2696 3753 5.998981 TGGGCGTGTTCTCTAGAAATTTTAA 59.001 36.000 0.00 0.00 35.58 1.52
2697 3754 5.410439 GTGGGCGTGTTCTCTAGAAATTTTA 59.590 40.000 0.00 0.00 35.58 1.52
2698 3755 4.215613 GTGGGCGTGTTCTCTAGAAATTTT 59.784 41.667 0.00 0.00 35.58 1.82
2700 3757 3.244422 TGTGGGCGTGTTCTCTAGAAATT 60.244 43.478 0.00 0.00 35.58 1.82
2702 3759 1.689813 TGTGGGCGTGTTCTCTAGAAA 59.310 47.619 0.00 0.00 35.58 2.52
2703 3760 1.000506 GTGTGGGCGTGTTCTCTAGAA 59.999 52.381 0.00 0.00 0.00 2.10
2704 3761 0.601558 GTGTGGGCGTGTTCTCTAGA 59.398 55.000 0.00 0.00 0.00 2.43
2705 3762 0.317160 TGTGTGGGCGTGTTCTCTAG 59.683 55.000 0.00 0.00 0.00 2.43
2706 3763 0.317160 CTGTGTGGGCGTGTTCTCTA 59.683 55.000 0.00 0.00 0.00 2.43
2712 3769 0.613260 ATATGTCTGTGTGGGCGTGT 59.387 50.000 0.00 0.00 0.00 4.49
2713 3770 1.665679 GAATATGTCTGTGTGGGCGTG 59.334 52.381 0.00 0.00 0.00 5.34
2714 3771 1.406887 GGAATATGTCTGTGTGGGCGT 60.407 52.381 0.00 0.00 0.00 5.68
2715 3772 1.299541 GGAATATGTCTGTGTGGGCG 58.700 55.000 0.00 0.00 0.00 6.13
2717 3774 2.158755 GGAGGGAATATGTCTGTGTGGG 60.159 54.545 0.00 0.00 0.00 4.61
2718 3775 2.483714 CGGAGGGAATATGTCTGTGTGG 60.484 54.545 0.00 0.00 0.00 4.17
2719 3776 2.168521 ACGGAGGGAATATGTCTGTGTG 59.831 50.000 0.00 0.00 0.00 3.82
2720 3777 2.431057 GACGGAGGGAATATGTCTGTGT 59.569 50.000 0.00 0.00 29.70 3.72
2721 3778 2.224066 GGACGGAGGGAATATGTCTGTG 60.224 54.545 0.00 0.00 29.70 3.66
2722 3779 2.040178 GGACGGAGGGAATATGTCTGT 58.960 52.381 0.00 0.00 32.32 3.41
2723 3780 1.000163 CGGACGGAGGGAATATGTCTG 60.000 57.143 0.00 0.00 0.00 3.51
2724 3781 1.329256 CGGACGGAGGGAATATGTCT 58.671 55.000 0.00 0.00 0.00 3.41
2725 3782 0.317479 CCGGACGGAGGGAATATGTC 59.683 60.000 4.40 0.00 37.50 3.06
2726 3783 0.105862 TCCGGACGGAGGGAATATGT 60.106 55.000 9.76 0.00 39.76 2.29
2727 3784 1.045407 TTCCGGACGGAGGGAATATG 58.955 55.000 13.64 0.00 46.06 1.78
2728 3785 1.797320 TTTCCGGACGGAGGGAATAT 58.203 50.000 13.64 0.00 46.06 1.28
2729 3786 1.797320 ATTTCCGGACGGAGGGAATA 58.203 50.000 13.64 0.00 46.06 1.75
2730 3787 1.415289 GTATTTCCGGACGGAGGGAAT 59.585 52.381 13.64 12.81 46.06 3.01
2731 3788 0.826062 GTATTTCCGGACGGAGGGAA 59.174 55.000 13.64 6.20 46.06 3.97
2732 3789 1.044790 GGTATTTCCGGACGGAGGGA 61.045 60.000 13.64 4.95 46.06 4.20
2733 3790 1.047034 AGGTATTTCCGGACGGAGGG 61.047 60.000 13.64 0.00 46.06 4.30
2734 3791 1.696063 TAGGTATTTCCGGACGGAGG 58.304 55.000 13.64 0.00 46.06 4.30
2735 3792 2.889045 TGATAGGTATTTCCGGACGGAG 59.111 50.000 13.64 0.00 46.06 4.63
2736 3793 2.948115 TGATAGGTATTTCCGGACGGA 58.052 47.619 1.83 9.76 43.52 4.69
2737 3794 3.955650 ATGATAGGTATTTCCGGACGG 57.044 47.619 1.83 3.96 41.99 4.79
2738 3795 5.892160 TCTATGATAGGTATTTCCGGACG 57.108 43.478 1.83 0.00 41.99 4.79
2739 3796 7.549488 CCATTTCTATGATAGGTATTTCCGGAC 59.451 40.741 1.83 0.00 36.15 4.79
2740 3797 7.456585 TCCATTTCTATGATAGGTATTTCCGGA 59.543 37.037 0.00 0.00 36.15 5.14
2741 3798 7.620880 TCCATTTCTATGATAGGTATTTCCGG 58.379 38.462 0.00 0.00 36.15 5.14
2742 3799 9.102757 CATCCATTTCTATGATAGGTATTTCCG 57.897 37.037 0.00 0.00 36.15 4.30
2743 3800 9.965902 ACATCCATTTCTATGATAGGTATTTCC 57.034 33.333 0.00 0.00 33.37 3.13
2791 3848 9.874205 CACAAATGGATAAAAGTGGATGTATTT 57.126 29.630 0.00 0.00 0.00 1.40
2810 3867 4.457603 TCCGGAATTACTTGTCCACAAATG 59.542 41.667 0.00 0.00 35.15 2.32
2811 3868 4.457949 GTCCGGAATTACTTGTCCACAAAT 59.542 41.667 5.23 0.00 35.15 2.32
2812 3869 3.816523 GTCCGGAATTACTTGTCCACAAA 59.183 43.478 5.23 0.00 35.15 2.83
2813 3870 3.181453 TGTCCGGAATTACTTGTCCACAA 60.181 43.478 5.23 0.00 33.10 3.33
2814 3871 2.369203 TGTCCGGAATTACTTGTCCACA 59.631 45.455 5.23 0.00 33.10 4.17
2815 3872 3.000727 CTGTCCGGAATTACTTGTCCAC 58.999 50.000 5.23 0.00 33.10 4.02
2816 3873 2.901192 TCTGTCCGGAATTACTTGTCCA 59.099 45.455 5.23 0.00 33.10 4.02
2817 3874 3.522553 CTCTGTCCGGAATTACTTGTCC 58.477 50.000 5.23 0.00 0.00 4.02
2818 3875 3.522553 CCTCTGTCCGGAATTACTTGTC 58.477 50.000 5.23 0.00 0.00 3.18
2819 3876 2.236395 CCCTCTGTCCGGAATTACTTGT 59.764 50.000 5.23 0.00 0.00 3.16
2820 3877 2.500098 TCCCTCTGTCCGGAATTACTTG 59.500 50.000 5.23 0.00 0.00 3.16
2821 3878 2.766828 CTCCCTCTGTCCGGAATTACTT 59.233 50.000 5.23 0.00 0.00 2.24
2822 3879 2.292323 ACTCCCTCTGTCCGGAATTACT 60.292 50.000 5.23 0.00 0.00 2.24
2823 3880 2.108970 ACTCCCTCTGTCCGGAATTAC 58.891 52.381 5.23 0.00 0.00 1.89
2824 3881 2.544844 ACTCCCTCTGTCCGGAATTA 57.455 50.000 5.23 0.00 0.00 1.40
2825 3882 2.544844 TACTCCCTCTGTCCGGAATT 57.455 50.000 5.23 0.00 0.00 2.17
2826 3883 2.777459 ATACTCCCTCTGTCCGGAAT 57.223 50.000 5.23 0.00 0.00 3.01
2827 3884 2.544844 AATACTCCCTCTGTCCGGAA 57.455 50.000 5.23 0.00 0.00 4.30
2828 3885 3.675348 TTAATACTCCCTCTGTCCGGA 57.325 47.619 0.00 0.00 0.00 5.14
2829 3886 3.641906 ACATTAATACTCCCTCTGTCCGG 59.358 47.826 0.00 0.00 0.00 5.14
2830 3887 4.939052 ACATTAATACTCCCTCTGTCCG 57.061 45.455 0.00 0.00 0.00 4.79
2831 3888 8.653036 AGTATACATTAATACTCCCTCTGTCC 57.347 38.462 5.50 0.00 38.06 4.02
2852 3909 9.787435 TCATGGAACTTTACAAACAAGTAGTAT 57.213 29.630 0.00 0.00 33.12 2.12
2853 3910 9.787435 ATCATGGAACTTTACAAACAAGTAGTA 57.213 29.630 0.00 0.00 33.12 1.82
2854 3911 8.567948 CATCATGGAACTTTACAAACAAGTAGT 58.432 33.333 0.00 0.00 33.12 2.73
2855 3912 8.783093 TCATCATGGAACTTTACAAACAAGTAG 58.217 33.333 0.00 0.00 33.12 2.57
2856 3913 8.684386 TCATCATGGAACTTTACAAACAAGTA 57.316 30.769 0.00 0.00 33.12 2.24
2860 3917 9.906660 GTATTTCATCATGGAACTTTACAAACA 57.093 29.630 0.00 0.00 0.00 2.83
2870 3927 8.682936 ACTCCTAATGTATTTCATCATGGAAC 57.317 34.615 0.00 0.00 35.48 3.62
2873 3930 6.656693 GGGACTCCTAATGTATTTCATCATGG 59.343 42.308 0.00 0.00 35.48 3.66
2884 3941 5.274015 TGTATGTGTGGGACTCCTAATGTA 58.726 41.667 0.00 0.00 0.00 2.29
2886 3943 4.753516 TGTATGTGTGGGACTCCTAATG 57.246 45.455 0.00 0.00 0.00 1.90
2887 3944 7.292356 TCAATATGTATGTGTGGGACTCCTAAT 59.708 37.037 0.00 0.00 0.00 1.73
2888 3945 6.613679 TCAATATGTATGTGTGGGACTCCTAA 59.386 38.462 0.00 0.00 0.00 2.69
2890 3947 4.968719 TCAATATGTATGTGTGGGACTCCT 59.031 41.667 0.00 0.00 0.00 3.69
2891 3948 5.290493 TCAATATGTATGTGTGGGACTCC 57.710 43.478 0.00 0.00 0.00 3.85
2892 3949 6.291377 ACATCAATATGTATGTGTGGGACTC 58.709 40.000 3.09 0.00 44.66 3.36
2893 3950 6.252599 ACATCAATATGTATGTGTGGGACT 57.747 37.500 3.09 0.00 44.66 3.85
2972 4053 7.609918 AGTTTTTACAAAAGGCCTGAATTTGTT 59.390 29.630 29.69 18.10 42.82 2.83
2978 4059 6.238538 CGTCTAGTTTTTACAAAAGGCCTGAA 60.239 38.462 5.69 0.00 0.00 3.02
2985 4066 6.515340 GCGATGTCGTCTAGTTTTTACAAAAG 59.485 38.462 4.20 0.00 42.22 2.27
2989 4070 4.383649 GTGCGATGTCGTCTAGTTTTTACA 59.616 41.667 4.20 0.00 42.22 2.41
2990 4071 4.488258 CGTGCGATGTCGTCTAGTTTTTAC 60.488 45.833 4.20 0.00 42.22 2.01
3014 4116 3.607078 GCTTAAAAGTCCTCACAGCAACG 60.607 47.826 0.00 0.00 0.00 4.10
3018 4120 5.880054 TTATGCTTAAAAGTCCTCACAGC 57.120 39.130 0.00 0.00 0.00 4.40
3019 4121 8.044060 TCATTTATGCTTAAAAGTCCTCACAG 57.956 34.615 8.67 0.00 31.33 3.66
3021 4123 7.336931 TCCTCATTTATGCTTAAAAGTCCTCAC 59.663 37.037 8.67 0.00 31.33 3.51
3024 4126 8.829373 AATCCTCATTTATGCTTAAAAGTCCT 57.171 30.769 8.67 0.00 31.33 3.85
3025 4127 9.305925 CAAATCCTCATTTATGCTTAAAAGTCC 57.694 33.333 8.67 0.00 31.33 3.85
3054 4191 7.376866 ACCGTACGTCGTAGTATCATTTATTTG 59.623 37.037 15.21 0.00 37.94 2.32
3062 4199 5.289595 AGAATACCGTACGTCGTAGTATCA 58.710 41.667 15.21 0.00 37.94 2.15
3063 4200 5.442130 CGAGAATACCGTACGTCGTAGTATC 60.442 48.000 15.21 13.97 37.94 2.24
3065 4202 3.729217 CGAGAATACCGTACGTCGTAGTA 59.271 47.826 15.21 9.02 37.94 1.82
3066 4203 2.535984 CGAGAATACCGTACGTCGTAGT 59.464 50.000 15.21 9.31 37.94 2.73
3067 4204 2.789339 TCGAGAATACCGTACGTCGTAG 59.211 50.000 18.94 5.45 37.94 3.51
3068 4205 2.804647 TCGAGAATACCGTACGTCGTA 58.195 47.619 18.94 13.36 37.94 3.43
3071 4208 4.143712 CGAAATTCGAGAATACCGTACGTC 59.856 45.833 15.21 4.95 43.74 4.34
3072 4209 4.031028 CGAAATTCGAGAATACCGTACGT 58.969 43.478 15.21 5.08 43.74 3.57
3073 4210 4.274069 TCGAAATTCGAGAATACCGTACG 58.726 43.478 14.59 8.69 44.82 3.67
3087 5347 9.449550 TGTGCATGATGTAATAATTCGAAATTC 57.550 29.630 0.00 0.00 0.00 2.17
3092 5352 7.727331 TGATGTGCATGATGTAATAATTCGA 57.273 32.000 0.00 0.00 0.00 3.71
3095 5355 9.908152 CAGATTGATGTGCATGATGTAATAATT 57.092 29.630 0.00 0.00 0.00 1.40
3096 5356 8.520351 CCAGATTGATGTGCATGATGTAATAAT 58.480 33.333 0.00 0.00 0.00 1.28
3098 5358 7.225725 TCCAGATTGATGTGCATGATGTAATA 58.774 34.615 0.00 0.00 0.00 0.98
3102 5362 3.883489 CTCCAGATTGATGTGCATGATGT 59.117 43.478 0.00 0.00 0.00 3.06
3103 5363 4.134563 TCTCCAGATTGATGTGCATGATG 58.865 43.478 0.00 0.00 0.00 3.07
3107 5367 2.092592 TGCTCTCCAGATTGATGTGCAT 60.093 45.455 0.00 0.00 0.00 3.96
3110 5370 5.578005 ATTTTGCTCTCCAGATTGATGTG 57.422 39.130 0.00 0.00 0.00 3.21
3115 5375 9.894783 CATAGAAATATTTTGCTCTCCAGATTG 57.105 33.333 1.43 0.00 0.00 2.67
3117 5377 9.638176 AACATAGAAATATTTTGCTCTCCAGAT 57.362 29.630 1.43 0.00 0.00 2.90
3120 5380 9.905713 ACTAACATAGAAATATTTTGCTCTCCA 57.094 29.630 1.43 0.00 0.00 3.86
3137 5397 7.913821 TGCTTACGTCACTTATCACTAACATAG 59.086 37.037 0.00 0.00 0.00 2.23
3139 5399 6.627243 TGCTTACGTCACTTATCACTAACAT 58.373 36.000 0.00 0.00 0.00 2.71
3141 5401 6.364165 TGTTGCTTACGTCACTTATCACTAAC 59.636 38.462 0.00 0.00 0.00 2.34
3142 5402 6.448852 TGTTGCTTACGTCACTTATCACTAA 58.551 36.000 0.00 0.00 0.00 2.24
3149 5446 5.984323 TGTACAATGTTGCTTACGTCACTTA 59.016 36.000 0.00 0.00 0.00 2.24
3160 5457 6.808212 GCACAAATTATCTGTACAATGTTGCT 59.192 34.615 0.00 0.00 0.00 3.91
3240 5541 2.489938 TACTCCACCATCAACCAAGC 57.510 50.000 0.00 0.00 0.00 4.01
3241 5542 5.064707 CGTTAATACTCCACCATCAACCAAG 59.935 44.000 0.00 0.00 0.00 3.61
3242 5543 4.938832 CGTTAATACTCCACCATCAACCAA 59.061 41.667 0.00 0.00 0.00 3.67
3243 5544 4.223255 TCGTTAATACTCCACCATCAACCA 59.777 41.667 0.00 0.00 0.00 3.67
3244 5545 4.761975 TCGTTAATACTCCACCATCAACC 58.238 43.478 0.00 0.00 0.00 3.77
3245 5546 6.148150 TGTTTCGTTAATACTCCACCATCAAC 59.852 38.462 0.00 0.00 0.00 3.18
3246 5547 6.148150 GTGTTTCGTTAATACTCCACCATCAA 59.852 38.462 0.00 0.00 0.00 2.57
3247 5548 5.640357 GTGTTTCGTTAATACTCCACCATCA 59.360 40.000 0.00 0.00 0.00 3.07
3248 5549 5.640357 TGTGTTTCGTTAATACTCCACCATC 59.360 40.000 0.00 0.00 0.00 3.51
3249 5550 5.553123 TGTGTTTCGTTAATACTCCACCAT 58.447 37.500 0.00 0.00 0.00 3.55
3250 5551 4.958509 TGTGTTTCGTTAATACTCCACCA 58.041 39.130 0.00 0.00 0.00 4.17
3251 5552 4.142966 GCTGTGTTTCGTTAATACTCCACC 60.143 45.833 0.00 0.00 0.00 4.61
3252 5553 4.449743 TGCTGTGTTTCGTTAATACTCCAC 59.550 41.667 0.00 0.00 0.00 4.02
3253 5554 4.633175 TGCTGTGTTTCGTTAATACTCCA 58.367 39.130 0.00 0.00 0.00 3.86
3254 5555 5.600908 TTGCTGTGTTTCGTTAATACTCC 57.399 39.130 0.00 0.00 0.00 3.85
3255 5556 9.047871 GTATTTTGCTGTGTTTCGTTAATACTC 57.952 33.333 0.00 0.00 0.00 2.59
3256 5557 8.561212 TGTATTTTGCTGTGTTTCGTTAATACT 58.439 29.630 0.00 0.00 30.96 2.12
3257 5558 8.716619 TGTATTTTGCTGTGTTTCGTTAATAC 57.283 30.769 0.00 0.00 0.00 1.89
3258 5559 8.561212 ACTGTATTTTGCTGTGTTTCGTTAATA 58.439 29.630 0.00 0.00 0.00 0.98
3259 5560 7.422399 ACTGTATTTTGCTGTGTTTCGTTAAT 58.578 30.769 0.00 0.00 0.00 1.40
3260 5561 6.787225 ACTGTATTTTGCTGTGTTTCGTTAA 58.213 32.000 0.00 0.00 0.00 2.01
3261 5562 6.366315 ACTGTATTTTGCTGTGTTTCGTTA 57.634 33.333 0.00 0.00 0.00 3.18
3262 5563 5.243426 ACTGTATTTTGCTGTGTTTCGTT 57.757 34.783 0.00 0.00 0.00 3.85
3263 5564 4.893424 ACTGTATTTTGCTGTGTTTCGT 57.107 36.364 0.00 0.00 0.00 3.85
3264 5565 9.210426 GATAATACTGTATTTTGCTGTGTTTCG 57.790 33.333 17.39 0.00 0.00 3.46
3265 5566 9.503427 GGATAATACTGTATTTTGCTGTGTTTC 57.497 33.333 17.39 0.00 0.00 2.78
3266 5567 9.019656 TGGATAATACTGTATTTTGCTGTGTTT 57.980 29.630 17.39 0.00 0.00 2.83
3267 5568 8.574251 TGGATAATACTGTATTTTGCTGTGTT 57.426 30.769 17.39 0.00 0.00 3.32
3268 5569 7.283127 CCTGGATAATACTGTATTTTGCTGTGT 59.717 37.037 17.39 0.00 0.00 3.72
3269 5570 7.255242 CCCTGGATAATACTGTATTTTGCTGTG 60.255 40.741 17.39 7.62 0.00 3.66
3270 5571 6.772716 CCCTGGATAATACTGTATTTTGCTGT 59.227 38.462 17.39 0.00 0.00 4.40
3271 5572 6.207417 CCCCTGGATAATACTGTATTTTGCTG 59.793 42.308 17.39 16.60 0.00 4.41
3272 5573 6.102615 TCCCCTGGATAATACTGTATTTTGCT 59.897 38.462 17.39 2.19 0.00 3.91
3273 5574 6.303839 TCCCCTGGATAATACTGTATTTTGC 58.696 40.000 17.39 14.91 0.00 3.68
3274 5575 8.940397 AATCCCCTGGATAATACTGTATTTTG 57.060 34.615 17.39 5.14 42.27 2.44
3277 5578 8.836735 CCTTAATCCCCTGGATAATACTGTATT 58.163 37.037 16.51 16.51 42.27 1.89
3278 5579 8.191110 TCCTTAATCCCCTGGATAATACTGTAT 58.809 37.037 0.00 0.00 42.27 2.29
3279 5580 7.550042 TCCTTAATCCCCTGGATAATACTGTA 58.450 38.462 0.00 0.00 42.27 2.74
3280 5581 6.399013 TCCTTAATCCCCTGGATAATACTGT 58.601 40.000 0.00 0.00 42.27 3.55
3281 5582 6.952605 TCCTTAATCCCCTGGATAATACTG 57.047 41.667 0.00 0.00 42.27 2.74
3282 5583 7.799583 TCTTTCCTTAATCCCCTGGATAATACT 59.200 37.037 0.00 0.00 42.27 2.12
3283 5584 7.985589 TCTTTCCTTAATCCCCTGGATAATAC 58.014 38.462 0.00 0.00 42.27 1.89
3284 5585 8.590083 TTCTTTCCTTAATCCCCTGGATAATA 57.410 34.615 0.00 0.00 42.27 0.98
3285 5586 7.480222 TTCTTTCCTTAATCCCCTGGATAAT 57.520 36.000 0.00 0.00 42.27 1.28
3286 5587 6.918951 TTCTTTCCTTAATCCCCTGGATAA 57.081 37.500 0.00 0.00 42.27 1.75
3287 5588 7.574750 TGTATTCTTTCCTTAATCCCCTGGATA 59.425 37.037 0.00 0.00 42.27 2.59
3288 5589 6.392842 TGTATTCTTTCCTTAATCCCCTGGAT 59.607 38.462 0.00 0.00 45.46 3.41
3289 5590 5.734140 TGTATTCTTTCCTTAATCCCCTGGA 59.266 40.000 0.00 0.00 35.55 3.86
3290 5591 6.013554 TGTATTCTTTCCTTAATCCCCTGG 57.986 41.667 0.00 0.00 0.00 4.45
3291 5592 6.064717 CCTGTATTCTTTCCTTAATCCCCTG 58.935 44.000 0.00 0.00 0.00 4.45
3292 5593 5.736616 ACCTGTATTCTTTCCTTAATCCCCT 59.263 40.000 0.00 0.00 0.00 4.79
3293 5594 6.014771 ACCTGTATTCTTTCCTTAATCCCC 57.985 41.667 0.00 0.00 0.00 4.81
3294 5595 7.116736 TCAACCTGTATTCTTTCCTTAATCCC 58.883 38.462 0.00 0.00 0.00 3.85
3295 5596 8.753497 ATCAACCTGTATTCTTTCCTTAATCC 57.247 34.615 0.00 0.00 0.00 3.01
3336 5637 6.087555 GGTTGTTTCAATACGCATTTAGTGTG 59.912 38.462 0.00 0.00 41.97 3.82
3337 5638 6.146898 GGTTGTTTCAATACGCATTTAGTGT 58.853 36.000 0.00 0.00 44.62 3.55
3338 5639 6.146216 TGGTTGTTTCAATACGCATTTAGTG 58.854 36.000 0.00 0.00 0.00 2.74
3339 5640 6.320494 TGGTTGTTTCAATACGCATTTAGT 57.680 33.333 0.00 0.00 0.00 2.24
3340 5641 5.799936 CCTGGTTGTTTCAATACGCATTTAG 59.200 40.000 0.00 0.00 0.00 1.85
3341 5642 5.336055 CCCTGGTTGTTTCAATACGCATTTA 60.336 40.000 0.00 0.00 0.00 1.40
3342 5643 4.555262 CCTGGTTGTTTCAATACGCATTT 58.445 39.130 0.00 0.00 0.00 2.32
3343 5644 3.056891 CCCTGGTTGTTTCAATACGCATT 60.057 43.478 0.00 0.00 0.00 3.56
3344 5645 2.491693 CCCTGGTTGTTTCAATACGCAT 59.508 45.455 0.00 0.00 0.00 4.73
3345 5646 1.883275 CCCTGGTTGTTTCAATACGCA 59.117 47.619 0.00 0.00 0.00 5.24
3346 5647 2.156098 TCCCTGGTTGTTTCAATACGC 58.844 47.619 0.00 0.00 0.00 4.42
3347 5648 5.385509 AAATCCCTGGTTGTTTCAATACG 57.614 39.130 0.00 0.00 0.00 3.06
3348 5649 7.312899 CACTAAATCCCTGGTTGTTTCAATAC 58.687 38.462 0.00 0.00 0.00 1.89
3349 5650 6.071616 GCACTAAATCCCTGGTTGTTTCAATA 60.072 38.462 0.00 0.00 0.00 1.90
3350 5651 5.279456 GCACTAAATCCCTGGTTGTTTCAAT 60.279 40.000 0.00 0.00 0.00 2.57
3351 5652 4.038642 GCACTAAATCCCTGGTTGTTTCAA 59.961 41.667 0.00 0.00 0.00 2.69
3352 5653 3.572255 GCACTAAATCCCTGGTTGTTTCA 59.428 43.478 0.00 0.00 0.00 2.69
3353 5654 4.174411 GCACTAAATCCCTGGTTGTTTC 57.826 45.455 0.00 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.