Multiple sequence alignment - TraesCS5D01G253800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G253800 chr5D 100.000 4924 0 0 1 4924 360549867 360544944 0.000000e+00 9094.0
1 TraesCS5D01G253800 chr5D 83.716 479 73 5 2 478 6910902 6910427 9.720000e-122 448.0
2 TraesCS5D01G253800 chr5A 90.674 2595 127 37 889 3438 461495877 461493353 0.000000e+00 3345.0
3 TraesCS5D01G253800 chr5A 94.332 1482 67 13 3444 4924 461493319 461491854 0.000000e+00 2255.0
4 TraesCS5D01G253800 chr5B 92.746 1420 73 14 3523 4924 425884572 425883165 0.000000e+00 2025.0
5 TraesCS5D01G253800 chr5B 92.663 1363 71 9 821 2166 425887335 425885985 0.000000e+00 1936.0
6 TraesCS5D01G253800 chr5B 94.026 1222 59 9 2221 3438 425885987 425884776 0.000000e+00 1840.0
7 TraesCS5D01G253800 chr2D 84.100 478 70 5 2 475 604074575 604075050 1.620000e-124 457.0
8 TraesCS5D01G253800 chr4D 84.716 458 67 3 2 457 344128391 344128847 5.810000e-124 455.0
9 TraesCS5D01G253800 chr4D 90.000 70 7 0 500 569 9254413 9254344 1.890000e-14 91.6
10 TraesCS5D01G253800 chr1A 83.644 483 69 8 2 478 63481393 63481871 3.500000e-121 446.0
11 TraesCS5D01G253800 chr7D 84.633 449 65 4 2 447 47425837 47425390 1.260000e-120 444.0
12 TraesCS5D01G253800 chr7D 92.424 66 5 0 500 565 627318066 627318131 1.460000e-15 95.3
13 TraesCS5D01G253800 chr7D 76.331 169 25 8 500 655 69823592 69823426 5.290000e-10 76.8
14 TraesCS5D01G253800 chr7A 83.438 477 73 6 2 476 30870854 30870382 5.850000e-119 438.0
15 TraesCS5D01G253800 chr7A 83.125 480 68 10 2 476 30869166 30868695 4.560000e-115 425.0
16 TraesCS5D01G253800 chr7A 96.104 77 3 0 4582 4658 332416612 332416536 5.170000e-25 126.0
17 TraesCS5D01G253800 chr7A 80.128 156 18 5 499 641 126949476 126949321 2.420000e-18 104.0
18 TraesCS5D01G253800 chr3B 82.952 481 74 8 2 478 740099022 740099498 1.270000e-115 427.0
19 TraesCS5D01G253800 chr3B 75.152 165 26 8 502 651 271139619 271139783 4.110000e-06 63.9
20 TraesCS5D01G253800 chr6B 82.195 483 83 3 2 482 493355813 493356294 3.550000e-111 412.0
21 TraesCS5D01G253800 chr6B 76.547 307 54 9 1193 1497 463556200 463556490 8.540000e-33 152.0
22 TraesCS5D01G253800 chr6B 96.104 77 3 0 4582 4658 52023318 52023242 5.170000e-25 126.0
23 TraesCS5D01G253800 chr6B 78.788 165 22 7 500 651 704318793 704318957 1.130000e-16 99.0
24 TraesCS5D01G253800 chr7B 81.935 155 25 3 500 651 703714372 703714526 1.440000e-25 128.0
25 TraesCS5D01G253800 chr7B 77.707 157 22 4 507 650 716927512 716927356 3.160000e-12 84.2
26 TraesCS5D01G253800 chr1B 95.652 69 3 0 501 569 633294046 633294114 1.450000e-20 111.0
27 TraesCS5D01G253800 chr1B 80.000 165 20 6 500 651 653870087 653869923 5.210000e-20 110.0
28 TraesCS5D01G253800 chr3A 91.429 70 6 0 500 569 739741942 739741873 4.060000e-16 97.1
29 TraesCS5D01G253800 chr2A 78.344 157 26 5 503 651 570787213 570787057 1.460000e-15 95.3
30 TraesCS5D01G253800 chr2A 78.912 147 18 4 508 641 693889627 693889773 2.440000e-13 87.9
31 TraesCS5D01G253800 chr6D 81.905 105 16 3 558 660 472274004 472274107 8.780000e-13 86.1
32 TraesCS5D01G253800 chr4B 76.331 169 21 10 517 669 662436703 662436538 6.840000e-09 73.1
33 TraesCS5D01G253800 chr4A 81.481 81 13 2 575 654 571740595 571740674 1.140000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G253800 chr5D 360544944 360549867 4923 True 9094.000000 9094 100.0000 1 4924 1 chr5D.!!$R2 4923
1 TraesCS5D01G253800 chr5A 461491854 461495877 4023 True 2800.000000 3345 92.5030 889 4924 2 chr5A.!!$R1 4035
2 TraesCS5D01G253800 chr5B 425883165 425887335 4170 True 1933.666667 2025 93.1450 821 4924 3 chr5B.!!$R1 4103
3 TraesCS5D01G253800 chr7A 30868695 30870854 2159 True 431.500000 438 83.2815 2 476 2 chr7A.!!$R3 474

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
511 514 0.039256 TGTCGTTACGCACACCCTAC 60.039 55.000 0.00 0.0 0.00 3.18 F
514 517 0.241749 CGTTACGCACACCCTACTCA 59.758 55.000 0.00 0.0 0.00 3.41 F
913 1340 0.472925 TGTGTAGGGAGGAAGCACCA 60.473 55.000 2.96 0.0 42.04 4.17 F
1834 2447 0.688487 CGTTAACAGGGGGTGAGGAA 59.312 55.000 6.39 0.0 0.00 3.36 F
1927 2540 2.503331 TGTGTGCCGAACAATCTCATT 58.497 42.857 0.00 0.0 41.57 2.57 F
2194 2820 2.698855 ATTACTGCTGGTAGTGCCTG 57.301 50.000 0.00 0.0 38.35 4.85 F
2607 3235 3.380320 ACGTCTGTCCACATGATAATCGA 59.620 43.478 0.00 0.0 0.00 3.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1512 1956 1.134220 TCCAGATGGCCAATAACCGAC 60.134 52.381 10.96 0.00 34.44 4.79 R
1808 2421 1.241315 CCCCCTGTTAACGGCAGTTG 61.241 60.000 12.79 0.00 41.35 3.16 R
2897 3531 1.202110 GCGGTGATGAAGTTCAGCATG 60.202 52.381 25.25 20.65 45.09 4.06 R
3121 3755 0.254747 TTGCAGTATTTCCCTCGGGG 59.745 55.000 0.00 0.00 46.11 5.73 R
3153 3787 0.839946 ATTAGCCGCTGAGGATTGGT 59.160 50.000 2.16 0.00 45.00 3.67 R
3453 4120 1.345715 ACAGGTCCCAATCCCCGATC 61.346 60.000 0.00 0.00 0.00 3.69 R
3950 4710 1.439365 GCTTCAGTTGCTTCACGCG 60.439 57.895 3.53 3.53 43.27 6.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.845205 AGAGCTGGCCTGACCTTGT 60.845 57.895 14.77 0.00 40.22 3.16
31 32 1.450312 GGCCTGACCTTGTCGATGG 60.450 63.158 0.00 0.00 34.95 3.51
34 35 0.742281 CCTGACCTTGTCGATGGCAG 60.742 60.000 0.00 13.72 34.95 4.85
36 37 2.045926 ACCTTGTCGATGGCAGCC 60.046 61.111 3.66 3.66 0.00 4.85
37 38 3.197790 CCTTGTCGATGGCAGCCG 61.198 66.667 7.03 0.93 0.00 5.52
47 48 0.107945 ATGGCAGCCGAGAAGTCTTC 60.108 55.000 7.03 4.26 0.00 2.87
53 54 0.944311 GCCGAGAAGTCTTCGTGCAA 60.944 55.000 14.99 0.00 34.02 4.08
72 73 3.399181 TGCCCCTAAGGACCAGCG 61.399 66.667 0.00 0.00 38.24 5.18
75 76 1.686110 CCCCTAAGGACCAGCGTCT 60.686 63.158 0.00 0.00 39.15 4.18
76 77 0.396695 CCCCTAAGGACCAGCGTCTA 60.397 60.000 0.00 0.00 39.15 2.59
77 78 1.033574 CCCTAAGGACCAGCGTCTAG 58.966 60.000 0.00 0.00 39.15 2.43
79 80 1.685491 CCTAAGGACCAGCGTCTAGGT 60.685 57.143 0.00 0.00 41.83 3.08
82 83 2.202623 GACCAGCGTCTAGGTGCG 60.203 66.667 0.00 0.00 46.35 5.34
83 84 2.675423 ACCAGCGTCTAGGTGCGA 60.675 61.111 6.49 0.00 46.35 5.10
86 87 1.515088 CAGCGTCTAGGTGCGACAG 60.515 63.158 6.49 0.00 41.78 3.51
106 107 1.737793 GTCGTCGCCATTGAATCCTTT 59.262 47.619 0.00 0.00 0.00 3.11
110 111 4.272504 TCGTCGCCATTGAATCCTTTAATC 59.727 41.667 0.00 0.00 0.00 1.75
114 115 5.530915 TCGCCATTGAATCCTTTAATCGATT 59.469 36.000 16.15 16.15 0.00 3.34
115 116 5.853282 CGCCATTGAATCCTTTAATCGATTC 59.147 40.000 15.25 14.04 43.05 2.52
123 124 9.758651 TGAATCCTTTAATCGATTCGAAGAATA 57.241 29.630 24.65 15.12 44.82 1.75
127 128 9.193133 TCCTTTAATCGATTCGAAGAATATGAC 57.807 33.333 24.65 0.00 45.90 3.06
163 164 2.309898 GCGTACGCACAACAAGAAAT 57.690 45.000 33.90 0.00 41.49 2.17
206 207 2.812499 GGCAGGAATCTACGCCGA 59.188 61.111 0.00 0.00 34.26 5.54
212 213 2.100989 AGGAATCTACGCCGAAACTCT 58.899 47.619 0.00 0.00 0.00 3.24
222 223 2.194271 GCCGAAACTCTGTCTAATCCG 58.806 52.381 0.00 0.00 0.00 4.18
230 231 0.249073 CTGTCTAATCCGTCCCAGCG 60.249 60.000 0.00 0.00 0.00 5.18
253 254 1.683917 CGAACTTGAGGAGGATCGGAT 59.316 52.381 0.00 0.00 36.07 4.18
266 267 2.442272 CGGATCCCGGGAGACTGT 60.442 66.667 30.42 12.03 44.15 3.55
269 270 0.688087 GGATCCCGGGAGACTGTCTT 60.688 60.000 30.42 9.36 33.66 3.01
270 271 1.411216 GGATCCCGGGAGACTGTCTTA 60.411 57.143 30.42 0.48 33.66 2.10
278 279 4.021368 CCGGGAGACTGTCTTAAAGAAGAA 60.021 45.833 12.27 0.00 43.38 2.52
283 284 2.731976 ACTGTCTTAAAGAAGAAGCGCG 59.268 45.455 0.00 0.00 43.38 6.86
284 285 2.066262 TGTCTTAAAGAAGAAGCGCGG 58.934 47.619 8.83 0.00 43.38 6.46
290 291 3.577313 GAAGAAGCGCGGCCATCC 61.577 66.667 8.83 0.00 0.00 3.51
319 322 4.408378 GCCCCTGCGGAACTAAAA 57.592 55.556 0.00 0.00 0.00 1.52
326 329 2.027469 CCTGCGGAACTAAAACCTACCT 60.027 50.000 0.00 0.00 0.00 3.08
337 340 9.539825 GAACTAAAACCTACCTATTTACTAGCC 57.460 37.037 0.00 0.00 0.00 3.93
339 342 6.796785 AAAACCTACCTATTTACTAGCCGA 57.203 37.500 0.00 0.00 0.00 5.54
341 344 6.796785 AACCTACCTATTTACTAGCCGAAA 57.203 37.500 0.00 0.00 0.00 3.46
343 346 7.370905 ACCTACCTATTTACTAGCCGAAAAT 57.629 36.000 0.00 0.00 0.00 1.82
344 347 7.215085 ACCTACCTATTTACTAGCCGAAAATG 58.785 38.462 0.00 0.00 0.00 2.32
345 348 6.649557 CCTACCTATTTACTAGCCGAAAATGG 59.350 42.308 0.00 0.00 0.00 3.16
366 369 1.615262 CACCAGAAATCCCCTCCCC 59.385 63.158 0.00 0.00 0.00 4.81
367 370 2.001269 ACCAGAAATCCCCTCCCCG 61.001 63.158 0.00 0.00 0.00 5.73
370 373 3.416880 GAAATCCCCTCCCCGCCA 61.417 66.667 0.00 0.00 0.00 5.69
372 375 4.760220 AATCCCCTCCCCGCCACT 62.760 66.667 0.00 0.00 0.00 4.00
407 410 0.980231 AGGCAGAGGAGAGGCGAATT 60.980 55.000 0.00 0.00 35.18 2.17
460 463 0.744771 GGCTTTCCCTAGTCGCCTTG 60.745 60.000 0.00 0.00 37.76 3.61
476 479 0.251165 CTTGCGGGAGGGGAAAGAAA 60.251 55.000 0.00 0.00 0.00 2.52
477 480 0.186386 TTGCGGGAGGGGAAAGAAAA 59.814 50.000 0.00 0.00 0.00 2.29
479 482 1.103803 GCGGGAGGGGAAAGAAAATC 58.896 55.000 0.00 0.00 0.00 2.17
480 483 1.615919 GCGGGAGGGGAAAGAAAATCA 60.616 52.381 0.00 0.00 0.00 2.57
481 484 2.802719 CGGGAGGGGAAAGAAAATCAA 58.197 47.619 0.00 0.00 0.00 2.57
482 485 3.365472 CGGGAGGGGAAAGAAAATCAAT 58.635 45.455 0.00 0.00 0.00 2.57
485 488 5.631481 CGGGAGGGGAAAGAAAATCAATCTA 60.631 44.000 0.00 0.00 0.00 1.98
486 489 6.194967 GGGAGGGGAAAGAAAATCAATCTAA 58.805 40.000 0.00 0.00 0.00 2.10
487 490 6.667848 GGGAGGGGAAAGAAAATCAATCTAAA 59.332 38.462 0.00 0.00 0.00 1.85
488 491 7.363880 GGGAGGGGAAAGAAAATCAATCTAAAC 60.364 40.741 0.00 0.00 0.00 2.01
489 492 7.363880 GGAGGGGAAAGAAAATCAATCTAAACC 60.364 40.741 0.00 0.00 0.00 3.27
490 493 6.440647 AGGGGAAAGAAAATCAATCTAAACCC 59.559 38.462 0.00 0.00 35.15 4.11
493 496 7.765819 GGGAAAGAAAATCAATCTAAACCCATG 59.234 37.037 0.00 0.00 35.56 3.66
494 497 8.314021 GGAAAGAAAATCAATCTAAACCCATGT 58.686 33.333 0.00 0.00 0.00 3.21
495 498 9.358872 GAAAGAAAATCAATCTAAACCCATGTC 57.641 33.333 0.00 0.00 0.00 3.06
496 499 7.088589 AGAAAATCAATCTAAACCCATGTCG 57.911 36.000 0.00 0.00 0.00 4.35
497 500 6.659242 AGAAAATCAATCTAAACCCATGTCGT 59.341 34.615 0.00 0.00 0.00 4.34
498 501 6.834168 AAATCAATCTAAACCCATGTCGTT 57.166 33.333 0.00 0.00 0.00 3.85
499 502 7.931578 AAATCAATCTAAACCCATGTCGTTA 57.068 32.000 0.00 0.00 0.00 3.18
501 504 4.865925 TCAATCTAAACCCATGTCGTTACG 59.134 41.667 0.00 0.00 0.00 3.18
502 505 2.609350 TCTAAACCCATGTCGTTACGC 58.391 47.619 0.00 0.00 0.00 4.42
504 507 0.869730 AAACCCATGTCGTTACGCAC 59.130 50.000 0.00 0.07 0.00 5.34
507 510 1.632046 CCCATGTCGTTACGCACACC 61.632 60.000 10.91 0.00 0.00 4.16
508 511 1.632046 CCATGTCGTTACGCACACCC 61.632 60.000 10.91 0.00 0.00 4.61
509 512 0.669318 CATGTCGTTACGCACACCCT 60.669 55.000 10.91 0.00 0.00 4.34
510 513 0.889994 ATGTCGTTACGCACACCCTA 59.110 50.000 10.91 0.00 0.00 3.53
511 514 0.039256 TGTCGTTACGCACACCCTAC 60.039 55.000 0.00 0.00 0.00 3.18
512 515 0.242017 GTCGTTACGCACACCCTACT 59.758 55.000 0.00 0.00 0.00 2.57
513 516 0.523072 TCGTTACGCACACCCTACTC 59.477 55.000 0.00 0.00 0.00 2.59
514 517 0.241749 CGTTACGCACACCCTACTCA 59.758 55.000 0.00 0.00 0.00 3.41
515 518 1.135199 CGTTACGCACACCCTACTCAT 60.135 52.381 0.00 0.00 0.00 2.90
518 521 2.890808 ACGCACACCCTACTCATATG 57.109 50.000 0.00 0.00 0.00 1.78
521 524 2.760374 GCACACCCTACTCATATGAGC 58.240 52.381 28.86 11.63 45.79 4.26
522 525 2.103094 GCACACCCTACTCATATGAGCA 59.897 50.000 28.86 17.84 45.79 4.26
523 526 3.722147 CACACCCTACTCATATGAGCAC 58.278 50.000 28.86 0.00 45.79 4.40
524 527 2.700897 ACACCCTACTCATATGAGCACC 59.299 50.000 28.86 0.00 45.79 5.01
525 528 2.968574 CACCCTACTCATATGAGCACCT 59.031 50.000 28.86 14.40 45.79 4.00
526 529 3.006323 CACCCTACTCATATGAGCACCTC 59.994 52.174 28.86 0.00 45.79 3.85
527 530 2.564947 CCCTACTCATATGAGCACCTCC 59.435 54.545 28.86 0.00 45.79 4.30
528 531 2.230025 CCTACTCATATGAGCACCTCCG 59.770 54.545 28.86 7.61 45.79 4.63
530 533 1.959985 ACTCATATGAGCACCTCCGAG 59.040 52.381 28.86 6.23 45.79 4.63
531 534 2.234143 CTCATATGAGCACCTCCGAGA 58.766 52.381 19.47 0.00 35.13 4.04
532 535 2.228582 CTCATATGAGCACCTCCGAGAG 59.771 54.545 19.47 0.00 35.13 3.20
533 536 2.158608 TCATATGAGCACCTCCGAGAGA 60.159 50.000 0.00 0.00 0.00 3.10
534 537 1.681538 TATGAGCACCTCCGAGAGAC 58.318 55.000 0.00 0.00 0.00 3.36
535 538 1.040339 ATGAGCACCTCCGAGAGACC 61.040 60.000 0.00 0.00 0.00 3.85
538 541 2.766400 GCACCTCCGAGAGACCGAG 61.766 68.421 0.00 0.00 0.00 4.63
539 542 2.438795 ACCTCCGAGAGACCGAGC 60.439 66.667 0.00 0.00 0.00 5.03
540 543 3.213402 CCTCCGAGAGACCGAGCC 61.213 72.222 0.00 0.00 0.00 4.70
541 544 3.578272 CTCCGAGAGACCGAGCCG 61.578 72.222 0.00 0.00 0.00 5.52
561 988 2.621338 GGCACGTCATCTTGAGATTGA 58.379 47.619 0.00 0.00 31.21 2.57
562 989 2.349886 GGCACGTCATCTTGAGATTGAC 59.650 50.000 10.75 10.75 33.41 3.18
565 992 4.108336 CACGTCATCTTGAGATTGACGAT 58.892 43.478 30.04 20.27 46.39 3.73
568 995 4.205996 CGTCATCTTGAGATTGACGATGTC 59.794 45.833 24.89 0.00 46.39 3.06
571 998 6.312426 GTCATCTTGAGATTGACGATGTCTTT 59.688 38.462 1.79 0.00 34.58 2.52
574 1001 6.687604 TCTTGAGATTGACGATGTCTTTGTA 58.312 36.000 1.79 0.00 33.15 2.41
578 1005 5.411781 AGATTGACGATGTCTTTGTAGTCC 58.588 41.667 0.00 0.00 33.15 3.85
580 1007 3.909430 TGACGATGTCTTTGTAGTCCAC 58.091 45.455 0.00 0.00 33.15 4.02
581 1008 3.319689 TGACGATGTCTTTGTAGTCCACA 59.680 43.478 0.00 0.00 33.15 4.17
582 1009 3.914312 ACGATGTCTTTGTAGTCCACAG 58.086 45.455 0.00 0.00 38.72 3.66
583 1010 3.254060 CGATGTCTTTGTAGTCCACAGG 58.746 50.000 0.00 0.00 38.72 4.00
585 1012 4.560716 CGATGTCTTTGTAGTCCACAGGAA 60.561 45.833 0.00 0.00 38.72 3.36
587 1014 4.641396 TGTCTTTGTAGTCCACAGGAATG 58.359 43.478 0.00 0.00 38.72 2.67
590 1017 6.013725 TGTCTTTGTAGTCCACAGGAATGTAT 60.014 38.462 0.00 0.00 38.72 2.29
603 1030 3.809905 GGAATGTATCCTCCCACTGAAC 58.190 50.000 0.00 0.00 45.56 3.18
604 1031 3.458189 GAATGTATCCTCCCACTGAACG 58.542 50.000 0.00 0.00 0.00 3.95
605 1032 0.535335 TGTATCCTCCCACTGAACGC 59.465 55.000 0.00 0.00 0.00 4.84
606 1033 0.535335 GTATCCTCCCACTGAACGCA 59.465 55.000 0.00 0.00 0.00 5.24
607 1034 0.535335 TATCCTCCCACTGAACGCAC 59.465 55.000 0.00 0.00 0.00 5.34
608 1035 1.480212 ATCCTCCCACTGAACGCACA 61.480 55.000 0.00 0.00 0.00 4.57
609 1036 1.003355 CCTCCCACTGAACGCACAT 60.003 57.895 0.00 0.00 0.00 3.21
610 1037 1.021390 CCTCCCACTGAACGCACATC 61.021 60.000 0.00 0.00 0.00 3.06
611 1038 1.354337 CTCCCACTGAACGCACATCG 61.354 60.000 0.00 0.00 45.38 3.84
620 1047 3.554692 CGCACATCGTCGGAAGCC 61.555 66.667 0.00 0.00 0.00 4.35
621 1048 2.125512 GCACATCGTCGGAAGCCT 60.126 61.111 0.00 0.00 0.00 4.58
622 1049 2.456119 GCACATCGTCGGAAGCCTG 61.456 63.158 0.00 0.00 0.00 4.85
623 1050 1.079819 CACATCGTCGGAAGCCTGT 60.080 57.895 0.00 0.00 0.00 4.00
624 1051 0.670546 CACATCGTCGGAAGCCTGTT 60.671 55.000 0.00 0.00 0.00 3.16
625 1052 0.892755 ACATCGTCGGAAGCCTGTTA 59.107 50.000 0.00 0.00 0.00 2.41
626 1053 1.480954 ACATCGTCGGAAGCCTGTTAT 59.519 47.619 0.00 0.00 0.00 1.89
627 1054 2.691526 ACATCGTCGGAAGCCTGTTATA 59.308 45.455 0.00 0.00 0.00 0.98
628 1055 3.131577 ACATCGTCGGAAGCCTGTTATAA 59.868 43.478 0.00 0.00 0.00 0.98
629 1056 3.872511 TCGTCGGAAGCCTGTTATAAA 57.127 42.857 0.00 0.00 0.00 1.40
630 1057 4.395959 TCGTCGGAAGCCTGTTATAAAT 57.604 40.909 0.00 0.00 0.00 1.40
631 1058 4.365723 TCGTCGGAAGCCTGTTATAAATC 58.634 43.478 0.00 0.00 0.00 2.17
632 1059 3.493503 CGTCGGAAGCCTGTTATAAATCC 59.506 47.826 0.00 0.00 0.00 3.01
633 1060 4.448210 GTCGGAAGCCTGTTATAAATCCA 58.552 43.478 0.00 0.00 0.00 3.41
634 1061 4.511826 GTCGGAAGCCTGTTATAAATCCAG 59.488 45.833 0.00 0.00 0.00 3.86
635 1062 3.815401 CGGAAGCCTGTTATAAATCCAGG 59.185 47.826 13.73 13.73 46.91 4.45
650 1077 6.432403 AAATCCAGGAAAATTTAAGCACCA 57.568 33.333 0.00 0.00 0.00 4.17
651 1078 6.432403 AATCCAGGAAAATTTAAGCACCAA 57.568 33.333 0.00 0.00 0.00 3.67
652 1079 6.625532 ATCCAGGAAAATTTAAGCACCAAT 57.374 33.333 0.00 0.00 0.00 3.16
653 1080 5.792741 TCCAGGAAAATTTAAGCACCAATG 58.207 37.500 0.00 0.00 0.00 2.82
654 1081 5.306678 TCCAGGAAAATTTAAGCACCAATGT 59.693 36.000 0.00 0.00 0.00 2.71
655 1082 5.639082 CCAGGAAAATTTAAGCACCAATGTC 59.361 40.000 0.00 0.00 0.00 3.06
656 1083 6.222389 CAGGAAAATTTAAGCACCAATGTCA 58.778 36.000 0.00 0.00 0.00 3.58
657 1084 6.705381 CAGGAAAATTTAAGCACCAATGTCAA 59.295 34.615 0.00 0.00 0.00 3.18
658 1085 6.930722 AGGAAAATTTAAGCACCAATGTCAAG 59.069 34.615 0.00 0.00 0.00 3.02
659 1086 6.705825 GGAAAATTTAAGCACCAATGTCAAGT 59.294 34.615 0.00 0.00 0.00 3.16
660 1087 7.870445 GGAAAATTTAAGCACCAATGTCAAGTA 59.130 33.333 0.00 0.00 0.00 2.24
661 1088 9.423061 GAAAATTTAAGCACCAATGTCAAGTAT 57.577 29.630 0.00 0.00 0.00 2.12
662 1089 8.761575 AAATTTAAGCACCAATGTCAAGTATG 57.238 30.769 0.00 0.00 0.00 2.39
663 1090 7.701539 ATTTAAGCACCAATGTCAAGTATGA 57.298 32.000 0.00 0.00 0.00 2.15
664 1091 6.741992 TTAAGCACCAATGTCAAGTATGAG 57.258 37.500 0.00 0.00 35.88 2.90
665 1092 4.558226 AGCACCAATGTCAAGTATGAGA 57.442 40.909 0.00 0.00 35.88 3.27
666 1093 5.108187 AGCACCAATGTCAAGTATGAGAT 57.892 39.130 0.00 0.00 41.02 2.75
668 1095 5.948162 AGCACCAATGTCAAGTATGAGATTT 59.052 36.000 0.00 0.00 44.59 2.17
669 1096 7.112122 AGCACCAATGTCAAGTATGAGATTTA 58.888 34.615 0.00 0.00 44.59 1.40
670 1097 7.281774 AGCACCAATGTCAAGTATGAGATTTAG 59.718 37.037 0.00 0.00 44.59 1.85
671 1098 7.412853 CACCAATGTCAAGTATGAGATTTAGC 58.587 38.462 0.00 0.00 44.59 3.09
672 1099 7.281774 CACCAATGTCAAGTATGAGATTTAGCT 59.718 37.037 0.00 0.00 44.59 3.32
673 1100 7.497249 ACCAATGTCAAGTATGAGATTTAGCTC 59.503 37.037 0.00 0.00 44.59 4.09
674 1101 7.714377 CCAATGTCAAGTATGAGATTTAGCTCT 59.286 37.037 0.00 0.00 44.59 4.09
675 1102 8.763356 CAATGTCAAGTATGAGATTTAGCTCTC 58.237 37.037 0.00 0.00 44.59 3.20
685 1112 6.013379 TGAGATTTAGCTCTCATAGGTAGGG 58.987 44.000 0.00 0.00 45.13 3.53
686 1113 6.183361 TGAGATTTAGCTCTCATAGGTAGGGA 60.183 42.308 0.00 0.00 45.13 4.20
687 1114 6.625267 AGATTTAGCTCTCATAGGTAGGGAA 58.375 40.000 0.00 0.00 39.29 3.97
688 1115 7.252678 AGATTTAGCTCTCATAGGTAGGGAAT 58.747 38.462 0.00 0.00 39.29 3.01
689 1116 8.402683 AGATTTAGCTCTCATAGGTAGGGAATA 58.597 37.037 0.00 0.00 39.29 1.75
690 1117 9.207868 GATTTAGCTCTCATAGGTAGGGAATAT 57.792 37.037 0.00 0.00 39.29 1.28
691 1118 8.596781 TTTAGCTCTCATAGGTAGGGAATATC 57.403 38.462 0.00 0.00 39.29 1.63
692 1119 6.159172 AGCTCTCATAGGTAGGGAATATCA 57.841 41.667 0.00 0.00 32.98 2.15
693 1120 5.955355 AGCTCTCATAGGTAGGGAATATCAC 59.045 44.000 0.00 0.00 32.98 3.06
694 1121 5.955355 GCTCTCATAGGTAGGGAATATCACT 59.045 44.000 0.00 0.00 32.85 3.41
695 1122 6.127479 GCTCTCATAGGTAGGGAATATCACTG 60.127 46.154 0.00 0.00 29.55 3.66
696 1123 6.864421 TCTCATAGGTAGGGAATATCACTGT 58.136 40.000 0.00 0.00 29.55 3.55
697 1124 7.306013 TCTCATAGGTAGGGAATATCACTGTT 58.694 38.462 0.00 0.00 29.55 3.16
701 1128 5.990668 AGGTAGGGAATATCACTGTTCAAC 58.009 41.667 0.00 0.00 29.55 3.18
702 1129 5.104485 AGGTAGGGAATATCACTGTTCAACC 60.104 44.000 0.00 0.00 29.55 3.77
703 1130 3.873910 AGGGAATATCACTGTTCAACCG 58.126 45.455 0.00 0.00 0.00 4.44
706 1133 3.621715 GGAATATCACTGTTCAACCGTCC 59.378 47.826 0.00 0.00 0.00 4.79
708 1135 2.631160 ATCACTGTTCAACCGTCCAA 57.369 45.000 0.00 0.00 0.00 3.53
709 1136 1.658994 TCACTGTTCAACCGTCCAAC 58.341 50.000 0.00 0.00 0.00 3.77
712 1139 1.741145 ACTGTTCAACCGTCCAACAAC 59.259 47.619 0.00 0.00 29.78 3.32
732 1159 3.454371 CGATTCCCTCGGTATTGAAGT 57.546 47.619 0.00 0.00 43.82 3.01
734 1161 4.940463 CGATTCCCTCGGTATTGAAGTTA 58.060 43.478 0.00 0.00 43.82 2.24
735 1162 5.353938 CGATTCCCTCGGTATTGAAGTTAA 58.646 41.667 0.00 0.00 43.82 2.01
736 1163 5.462398 CGATTCCCTCGGTATTGAAGTTAAG 59.538 44.000 0.00 0.00 43.82 1.85
738 1165 3.453353 TCCCTCGGTATTGAAGTTAAGGG 59.547 47.826 0.00 0.00 43.01 3.95
739 1166 3.433173 CCCTCGGTATTGAAGTTAAGGGG 60.433 52.174 0.00 0.00 38.85 4.79
740 1167 3.199289 CCTCGGTATTGAAGTTAAGGGGT 59.801 47.826 0.00 0.00 0.00 4.95
742 1169 3.839490 TCGGTATTGAAGTTAAGGGGTGA 59.161 43.478 0.00 0.00 0.00 4.02
743 1170 4.286549 TCGGTATTGAAGTTAAGGGGTGAA 59.713 41.667 0.00 0.00 0.00 3.18
744 1171 4.393990 CGGTATTGAAGTTAAGGGGTGAAC 59.606 45.833 0.00 0.00 0.00 3.18
745 1172 4.393990 GGTATTGAAGTTAAGGGGTGAACG 59.606 45.833 0.00 0.00 0.00 3.95
746 1173 3.842007 TTGAAGTTAAGGGGTGAACGA 57.158 42.857 0.00 0.00 0.00 3.85
747 1174 3.842007 TGAAGTTAAGGGGTGAACGAA 57.158 42.857 0.00 0.00 0.00 3.85
748 1175 3.735591 TGAAGTTAAGGGGTGAACGAAG 58.264 45.455 0.00 0.00 0.00 3.79
750 1177 3.121738 AGTTAAGGGGTGAACGAAGTG 57.878 47.619 0.00 0.00 45.00 3.16
751 1178 2.701951 AGTTAAGGGGTGAACGAAGTGA 59.298 45.455 0.00 0.00 45.00 3.41
752 1179 3.326880 AGTTAAGGGGTGAACGAAGTGAT 59.673 43.478 0.00 0.00 45.00 3.06
753 1180 4.529377 AGTTAAGGGGTGAACGAAGTGATA 59.471 41.667 0.00 0.00 45.00 2.15
754 1181 3.329929 AAGGGGTGAACGAAGTGATAC 57.670 47.619 0.00 0.00 45.00 2.24
755 1182 1.203994 AGGGGTGAACGAAGTGATACG 59.796 52.381 0.00 0.00 45.00 3.06
756 1183 1.067354 GGGGTGAACGAAGTGATACGT 60.067 52.381 0.00 0.00 45.00 3.57
766 1193 5.957798 ACGAAGTGATACGTTAAAGATGGA 58.042 37.500 0.00 0.00 42.51 3.41
767 1194 6.392354 ACGAAGTGATACGTTAAAGATGGAA 58.608 36.000 0.00 0.00 42.51 3.53
768 1195 6.869913 ACGAAGTGATACGTTAAAGATGGAAA 59.130 34.615 0.00 0.00 42.51 3.13
769 1196 7.385752 ACGAAGTGATACGTTAAAGATGGAAAA 59.614 33.333 0.00 0.00 42.51 2.29
770 1197 7.898309 CGAAGTGATACGTTAAAGATGGAAAAG 59.102 37.037 0.00 0.00 0.00 2.27
771 1198 8.617290 AAGTGATACGTTAAAGATGGAAAAGT 57.383 30.769 0.00 0.00 0.00 2.66
772 1199 8.029642 AGTGATACGTTAAAGATGGAAAAGTG 57.970 34.615 0.00 0.00 0.00 3.16
773 1200 7.119262 AGTGATACGTTAAAGATGGAAAAGTGG 59.881 37.037 0.00 0.00 0.00 4.00
774 1201 7.118680 GTGATACGTTAAAGATGGAAAAGTGGA 59.881 37.037 0.00 0.00 0.00 4.02
775 1202 5.684550 ACGTTAAAGATGGAAAAGTGGAC 57.315 39.130 0.00 0.00 0.00 4.02
776 1203 5.374071 ACGTTAAAGATGGAAAAGTGGACT 58.626 37.500 0.00 0.00 0.00 3.85
777 1204 5.826208 ACGTTAAAGATGGAAAAGTGGACTT 59.174 36.000 0.00 0.00 37.91 3.01
791 1218 6.426646 AAGTGGACTTTTCTCTACAGATGT 57.573 37.500 0.00 0.00 30.82 3.06
792 1219 7.540474 AAGTGGACTTTTCTCTACAGATGTA 57.460 36.000 0.00 0.00 30.82 2.29
793 1220 7.607250 AAGTGGACTTTTCTCTACAGATGTAG 58.393 38.462 12.83 12.83 40.16 2.74
794 1221 7.451877 AAGTGGACTTTTCTCTACAGATGTAGA 59.548 37.037 18.97 18.97 42.66 2.59
806 1233 5.049398 ACAGATGTAGAGTTTGTCTCGAC 57.951 43.478 0.00 0.00 46.86 4.20
807 1234 4.762765 ACAGATGTAGAGTTTGTCTCGACT 59.237 41.667 8.86 0.00 44.99 4.18
808 1235 5.106475 ACAGATGTAGAGTTTGTCTCGACTC 60.106 44.000 8.86 0.00 44.99 3.36
827 1254 3.007940 ACTCTCGAAATTGACATGTGGGA 59.992 43.478 1.15 0.00 0.00 4.37
913 1340 0.472925 TGTGTAGGGAGGAAGCACCA 60.473 55.000 2.96 0.00 42.04 4.17
1420 1864 4.151121 TGAAAAATTCAGACCATGAGGCA 58.849 39.130 0.00 0.00 39.68 4.75
1512 1956 2.729882 CAGGTTAGTCGAACGAACTTGG 59.270 50.000 11.81 1.98 37.23 3.61
1522 1966 3.422603 CGAACGAACTTGGTCGGTTATTG 60.423 47.826 12.77 0.00 42.12 1.90
1611 2223 2.489938 TTGTATGTGGTTCCTCTGCC 57.510 50.000 0.00 0.00 0.00 4.85
1669 2282 5.132816 TCTGGAGTCAGATAGTCTACCATGA 59.867 44.000 0.00 0.00 44.39 3.07
1670 2283 5.380900 TGGAGTCAGATAGTCTACCATGAG 58.619 45.833 0.00 0.00 0.00 2.90
1677 2290 6.208402 TCAGATAGTCTACCATGAGAAGATGC 59.792 42.308 0.00 0.00 0.00 3.91
1721 2334 4.334759 CAGATGCAGTGAGGTTATCCAAAG 59.665 45.833 0.00 0.00 35.89 2.77
1834 2447 0.688487 CGTTAACAGGGGGTGAGGAA 59.312 55.000 6.39 0.00 0.00 3.36
1927 2540 2.503331 TGTGTGCCGAACAATCTCATT 58.497 42.857 0.00 0.00 41.57 2.57
1936 2549 5.562696 GCCGAACAATCTCATTTCACTTTGA 60.563 40.000 0.00 0.00 0.00 2.69
2134 2747 9.696917 GTTCCATGAAATTCAAAAGTCTGTATT 57.303 29.630 0.00 0.00 0.00 1.89
2144 2757 6.500041 TCAAAAGTCTGTATTTCAAAACGGG 58.500 36.000 0.00 0.00 0.00 5.28
2194 2820 2.698855 ATTACTGCTGGTAGTGCCTG 57.301 50.000 0.00 0.00 38.35 4.85
2485 3113 4.600692 ACAAAAACCAAGGTAGGAATGC 57.399 40.909 0.00 0.00 0.00 3.56
2533 3161 7.890127 TGATTCTATCATCACCTCAAAACCTTT 59.110 33.333 0.00 0.00 33.59 3.11
2550 3178 5.074746 ACCTTTGTTCCTGTTCCCTTATT 57.925 39.130 0.00 0.00 0.00 1.40
2606 3234 3.706698 ACGTCTGTCCACATGATAATCG 58.293 45.455 0.00 0.00 0.00 3.34
2607 3235 3.380320 ACGTCTGTCCACATGATAATCGA 59.620 43.478 0.00 0.00 0.00 3.59
2636 3264 8.977267 ATTTGAGAAAAATTGGTTCATTTCCA 57.023 26.923 5.26 0.00 33.35 3.53
2642 3270 8.158789 AGAAAAATTGGTTCATTTCCATGTCAT 58.841 29.630 5.26 0.00 34.75 3.06
2654 3282 9.716531 TCATTTCCATGTCATACATATCTCTTC 57.283 33.333 0.00 0.00 36.53 2.87
2723 3351 6.966632 GTGCTGCTCTTCTCTATAATATCTCG 59.033 42.308 0.00 0.00 0.00 4.04
2724 3352 6.657117 TGCTGCTCTTCTCTATAATATCTCGT 59.343 38.462 0.00 0.00 0.00 4.18
2725 3353 6.966632 GCTGCTCTTCTCTATAATATCTCGTG 59.033 42.308 0.00 0.00 0.00 4.35
2726 3354 7.361713 GCTGCTCTTCTCTATAATATCTCGTGT 60.362 40.741 0.00 0.00 0.00 4.49
2727 3355 8.035165 TGCTCTTCTCTATAATATCTCGTGTC 57.965 38.462 0.00 0.00 0.00 3.67
2728 3356 7.148557 TGCTCTTCTCTATAATATCTCGTGTCG 60.149 40.741 0.00 0.00 0.00 4.35
2729 3357 7.148540 GCTCTTCTCTATAATATCTCGTGTCGT 60.149 40.741 0.00 0.00 0.00 4.34
2830 3463 6.325028 AGGAATTATCTCCTGATCGACTTCAA 59.675 38.462 0.00 0.00 44.56 2.69
2897 3531 9.039870 ACTCGAATCATTTCAATGTAAGATCTC 57.960 33.333 0.00 0.00 37.65 2.75
3050 3684 4.454504 ACAGCTGTTGGGTAAGTTATTTCG 59.545 41.667 15.25 0.00 0.00 3.46
3061 3695 5.876460 GGTAAGTTATTTCGCTAACCTTGGA 59.124 40.000 0.00 0.00 33.02 3.53
3083 3717 6.039270 TGGACATGAACTTTCGAGAAATGTTT 59.961 34.615 0.00 0.00 0.00 2.83
3097 3731 3.959535 AATGTTTACCCAACCTGCATG 57.040 42.857 0.00 0.00 33.97 4.06
3121 3755 5.864628 CTTGTTACTAAGCTTGAGTTCCC 57.135 43.478 9.86 1.99 0.00 3.97
3153 3787 8.303876 GGGAAATACTGCAAATTAGTTTTCTGA 58.696 33.333 0.00 0.00 32.34 3.27
3192 3826 5.640218 AATTTCATTTCACAAAGCACACG 57.360 34.783 0.00 0.00 0.00 4.49
3276 3910 6.547141 TCATCCATTTGGTAATCTCATCCAAC 59.453 38.462 0.00 0.00 40.32 3.77
3353 3989 9.545105 TGCTCTATTAGTCTTCACTAGTACTAC 57.455 37.037 0.00 0.00 36.43 2.73
3375 4012 3.933861 ACTAATTAACCCTGGGAGCAG 57.066 47.619 22.23 9.52 0.00 4.24
3453 4120 5.964958 ACTAATCATAATTTGGGGCATCG 57.035 39.130 0.00 0.00 0.00 3.84
3484 4151 1.003718 GACCTGTTCGGACAAGGGG 60.004 63.158 14.47 7.93 34.85 4.79
3512 4179 6.806739 GTCACACCCTTAAAAATTGCATCTAC 59.193 38.462 0.00 0.00 0.00 2.59
3514 4181 6.808212 CACACCCTTAAAAATTGCATCTACAG 59.192 38.462 0.00 0.00 0.00 2.74
3517 4184 8.184192 CACCCTTAAAAATTGCATCTACAGTAG 58.816 37.037 0.47 0.47 0.00 2.57
3519 4186 9.125026 CCCTTAAAAATTGCATCTACAGTAGAT 57.875 33.333 16.34 16.34 46.06 1.98
3645 4403 7.775093 AGCATCTACAATAACCAAGCAATTCTA 59.225 33.333 0.00 0.00 0.00 2.10
3759 4519 8.548721 CGTGCTACATTTATTTAGGTAAAGGAG 58.451 37.037 0.00 0.00 31.73 3.69
3784 4544 4.959723 CCACATTGGTTGGAAAAATGTCT 58.040 39.130 0.00 0.00 41.39 3.41
3839 4599 8.896722 TTGAGGTCTAGAGTTTAGGTCTATTT 57.103 34.615 0.00 0.00 0.00 1.40
3871 4631 4.423625 AGGATTGAGGCTTAGCGTTTAT 57.576 40.909 0.00 0.00 0.00 1.40
3942 4702 4.275689 TGCTCGAATGTAAATAGGCCATTG 59.724 41.667 5.01 0.00 0.00 2.82
4026 4786 4.308265 TCATGTCAACAACATTGCATTGG 58.692 39.130 12.87 0.00 46.73 3.16
4049 4809 6.072175 TGGTGCCAGTATTAACTTTGTGAATC 60.072 38.462 0.00 0.00 31.97 2.52
4051 4811 6.801862 GTGCCAGTATTAACTTTGTGAATCAC 59.198 38.462 6.41 6.41 31.97 3.06
4069 4829 6.832900 TGAATCACCTGCACCAAATGAATATA 59.167 34.615 0.00 0.00 0.00 0.86
4097 4857 8.317679 CCACTTGTTTGGATATTTTTATTCCCA 58.682 33.333 0.00 0.00 39.24 4.37
4125 4885 5.522460 CAGAAAAGGCATATGCTCAAATTGG 59.478 40.000 26.12 7.61 41.70 3.16
4353 5126 6.208644 CACTGGTGTTGTTCCTTTTATTCTG 58.791 40.000 0.00 0.00 0.00 3.02
4574 5347 8.299262 ACACATAATGCACGAGTTAAGATATC 57.701 34.615 0.00 0.00 0.00 1.63
4735 5508 7.880195 ACATATATGACCAACAGGAATCTAAGC 59.120 37.037 19.63 0.00 0.00 3.09
4754 5527 0.040204 CACCCCCAGAAGGAGCATTT 59.960 55.000 0.00 0.00 38.24 2.32
4907 5724 3.834489 AGAGATGCTTGTCATAGGGTG 57.166 47.619 0.00 0.00 35.05 4.61
4910 5727 4.411540 AGAGATGCTTGTCATAGGGTGAAT 59.588 41.667 0.00 0.00 38.90 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.835927 GACAAGGTCAGGCCAGCTCT 61.836 60.000 5.01 0.00 40.61 4.09
25 26 2.284798 GACTTCTCGGCTGCCATCGA 62.285 60.000 20.29 9.35 0.00 3.59
31 32 1.080434 ACGAAGACTTCTCGGCTGC 60.080 57.895 13.22 0.00 0.00 5.25
34 35 0.944311 TTGCACGAAGACTTCTCGGC 60.944 55.000 13.22 12.99 0.00 5.54
36 37 1.453524 CACTTGCACGAAGACTTCTCG 59.546 52.381 13.22 4.38 35.42 4.04
37 38 1.193426 GCACTTGCACGAAGACTTCTC 59.807 52.381 13.22 3.38 41.59 2.87
53 54 2.301738 GCTGGTCCTTAGGGGCACT 61.302 63.158 0.00 0.00 39.39 4.40
72 73 0.179194 GACGACTGTCGCACCTAGAC 60.179 60.000 28.27 7.57 45.12 2.59
82 83 1.324736 GATTCAATGGCGACGACTGTC 59.675 52.381 0.65 0.00 41.91 3.51
83 84 1.359848 GATTCAATGGCGACGACTGT 58.640 50.000 0.65 0.00 0.00 3.55
86 87 1.369625 AAGGATTCAATGGCGACGAC 58.630 50.000 0.00 0.00 0.00 4.34
93 94 7.189693 TCGAATCGATTAAAGGATTCAATGG 57.810 36.000 21.80 11.82 45.54 3.16
94 95 8.551205 TCTTCGAATCGATTAAAGGATTCAATG 58.449 33.333 22.78 12.27 45.54 2.82
95 96 8.662781 TCTTCGAATCGATTAAAGGATTCAAT 57.337 30.769 22.78 0.00 45.54 2.57
106 107 7.430441 TGGTGTCATATTCTTCGAATCGATTA 58.570 34.615 11.38 0.00 35.23 1.75
110 111 5.966636 TTGGTGTCATATTCTTCGAATCG 57.033 39.130 0.00 0.00 0.00 3.34
114 115 6.145534 GCGATATTTGGTGTCATATTCTTCGA 59.854 38.462 0.00 0.00 0.00 3.71
115 116 6.299604 GCGATATTTGGTGTCATATTCTTCG 58.700 40.000 0.00 0.00 0.00 3.79
123 124 2.325583 ACGGCGATATTTGGTGTCAT 57.674 45.000 16.62 0.00 0.00 3.06
127 128 3.234368 GCAACGGCGATATTTGGTG 57.766 52.632 16.62 0.00 0.00 4.17
146 147 5.600908 TTAGGATTTCTTGTTGTGCGTAC 57.399 39.130 0.00 0.00 0.00 3.67
153 154 3.181506 GGCGAGCTTAGGATTTCTTGTTG 60.182 47.826 0.00 0.00 0.00 3.33
154 155 3.010420 GGCGAGCTTAGGATTTCTTGTT 58.990 45.455 0.00 0.00 0.00 2.83
155 156 2.633488 GGCGAGCTTAGGATTTCTTGT 58.367 47.619 0.00 0.00 0.00 3.16
157 158 1.941325 CGGCGAGCTTAGGATTTCTT 58.059 50.000 0.00 0.00 0.00 2.52
180 181 0.619832 AGATTCCTGCCAGCTCCTCA 60.620 55.000 0.00 0.00 0.00 3.86
205 206 3.194968 TGGGACGGATTAGACAGAGTTTC 59.805 47.826 0.00 0.00 0.00 2.78
206 207 3.170717 TGGGACGGATTAGACAGAGTTT 58.829 45.455 0.00 0.00 0.00 2.66
212 213 1.813859 CGCTGGGACGGATTAGACA 59.186 57.895 0.00 0.00 36.31 3.41
230 231 1.202313 CGATCCTCCTCAAGTTCGTCC 60.202 57.143 0.00 0.00 0.00 4.79
231 232 1.202313 CCGATCCTCCTCAAGTTCGTC 60.202 57.143 0.00 0.00 30.69 4.20
253 254 2.176889 CTTTAAGACAGTCTCCCGGGA 58.823 52.381 25.06 25.06 0.00 5.14
258 259 4.623595 CGCTTCTTCTTTAAGACAGTCTCC 59.376 45.833 2.72 0.00 41.48 3.71
259 260 4.090786 GCGCTTCTTCTTTAAGACAGTCTC 59.909 45.833 2.72 0.00 41.48 3.36
266 267 1.076332 GCCGCGCTTCTTCTTTAAGA 58.924 50.000 5.56 0.00 40.03 2.10
269 270 0.392461 ATGGCCGCGCTTCTTCTTTA 60.392 50.000 5.56 0.00 0.00 1.85
270 271 1.648467 GATGGCCGCGCTTCTTCTTT 61.648 55.000 5.56 0.00 0.00 2.52
311 312 9.539825 GGCTAGTAAATAGGTAGGTTTTAGTTC 57.460 37.037 0.00 0.00 31.55 3.01
312 313 8.200120 CGGCTAGTAAATAGGTAGGTTTTAGTT 58.800 37.037 0.00 0.00 31.55 2.24
313 314 7.561356 TCGGCTAGTAAATAGGTAGGTTTTAGT 59.439 37.037 0.00 0.00 31.55 2.24
314 315 7.945134 TCGGCTAGTAAATAGGTAGGTTTTAG 58.055 38.462 0.00 0.00 31.55 1.85
315 316 7.896383 TCGGCTAGTAAATAGGTAGGTTTTA 57.104 36.000 0.00 0.00 31.55 1.52
319 322 6.796785 TTTTCGGCTAGTAAATAGGTAGGT 57.203 37.500 0.00 0.00 31.55 3.08
326 329 4.139038 GCCCCATTTTCGGCTAGTAAATA 58.861 43.478 0.00 0.00 42.21 1.40
337 340 0.965439 TTTCTGGTGCCCCATTTTCG 59.035 50.000 0.00 0.00 40.90 3.46
339 342 1.908619 GGATTTCTGGTGCCCCATTTT 59.091 47.619 0.00 0.00 40.90 1.82
341 344 0.325577 GGGATTTCTGGTGCCCCATT 60.326 55.000 0.00 0.00 40.90 3.16
343 346 2.770130 GGGATTTCTGGTGCCCCA 59.230 61.111 0.00 0.00 38.87 4.96
345 348 1.076705 GAGGGGATTTCTGGTGCCC 60.077 63.158 0.00 0.00 46.77 5.36
349 352 2.001269 CGGGGAGGGGATTTCTGGT 61.001 63.158 0.00 0.00 0.00 4.00
353 356 3.416880 TGGCGGGGAGGGGATTTC 61.417 66.667 0.00 0.00 0.00 2.17
384 387 3.847602 CCTCTCCTCTGCCTGCCG 61.848 72.222 0.00 0.00 0.00 5.69
389 392 0.531753 GAATTCGCCTCTCCTCTGCC 60.532 60.000 0.00 0.00 0.00 4.85
391 394 1.800655 CGTGAATTCGCCTCTCCTCTG 60.801 57.143 13.25 0.00 0.00 3.35
392 395 0.457851 CGTGAATTCGCCTCTCCTCT 59.542 55.000 13.25 0.00 0.00 3.69
397 400 2.125106 GCCCGTGAATTCGCCTCT 60.125 61.111 13.25 0.00 0.00 3.69
422 425 0.671251 CTTCCTTCCCTCGATCTCCG 59.329 60.000 0.00 0.00 40.25 4.63
424 427 0.391228 GCCTTCCTTCCCTCGATCTC 59.609 60.000 0.00 0.00 0.00 2.75
460 463 1.103803 GATTTTCTTTCCCCTCCCGC 58.896 55.000 0.00 0.00 0.00 6.13
463 466 7.363880 GGTTTAGATTGATTTTCTTTCCCCTCC 60.364 40.741 0.00 0.00 0.00 4.30
476 479 6.036735 CGTAACGACATGGGTTTAGATTGATT 59.963 38.462 9.31 0.00 0.00 2.57
477 480 5.522460 CGTAACGACATGGGTTTAGATTGAT 59.478 40.000 9.31 0.00 0.00 2.57
479 482 4.493545 GCGTAACGACATGGGTTTAGATTG 60.494 45.833 9.31 0.00 0.00 2.67
480 483 3.619929 GCGTAACGACATGGGTTTAGATT 59.380 43.478 9.31 0.00 0.00 2.40
481 484 3.192466 GCGTAACGACATGGGTTTAGAT 58.808 45.455 9.31 0.00 0.00 1.98
482 485 2.029200 TGCGTAACGACATGGGTTTAGA 60.029 45.455 9.31 0.00 0.00 2.10
485 488 0.869730 GTGCGTAACGACATGGGTTT 59.130 50.000 9.31 0.00 0.00 3.27
486 489 0.249953 TGTGCGTAACGACATGGGTT 60.250 50.000 9.05 9.05 0.00 4.11
487 490 0.947180 GTGTGCGTAACGACATGGGT 60.947 55.000 0.00 0.00 0.00 4.51
488 491 1.632046 GGTGTGCGTAACGACATGGG 61.632 60.000 0.00 0.00 0.00 4.00
489 492 1.632046 GGGTGTGCGTAACGACATGG 61.632 60.000 0.00 0.00 0.00 3.66
490 493 0.669318 AGGGTGTGCGTAACGACATG 60.669 55.000 0.00 0.00 0.00 3.21
493 496 0.242017 AGTAGGGTGTGCGTAACGAC 59.758 55.000 0.00 0.00 0.00 4.34
494 497 0.523072 GAGTAGGGTGTGCGTAACGA 59.477 55.000 0.00 0.00 0.00 3.85
495 498 0.241749 TGAGTAGGGTGTGCGTAACG 59.758 55.000 0.00 0.00 0.00 3.18
496 499 2.667473 ATGAGTAGGGTGTGCGTAAC 57.333 50.000 0.00 0.00 0.00 2.50
497 500 3.955551 TCATATGAGTAGGGTGTGCGTAA 59.044 43.478 0.00 0.00 0.00 3.18
498 501 3.558033 TCATATGAGTAGGGTGTGCGTA 58.442 45.455 0.00 0.00 0.00 4.42
499 502 2.362397 CTCATATGAGTAGGGTGTGCGT 59.638 50.000 22.42 0.00 37.40 5.24
501 504 2.103094 TGCTCATATGAGTAGGGTGTGC 59.897 50.000 28.92 15.56 43.85 4.57
502 505 3.493350 GGTGCTCATATGAGTAGGGTGTG 60.493 52.174 28.92 6.53 43.85 3.82
504 507 2.968574 AGGTGCTCATATGAGTAGGGTG 59.031 50.000 28.92 7.88 43.85 4.61
507 510 2.230025 CGGAGGTGCTCATATGAGTAGG 59.770 54.545 28.92 9.59 43.85 3.18
508 511 3.149981 TCGGAGGTGCTCATATGAGTAG 58.850 50.000 28.92 15.31 43.85 2.57
509 512 3.149981 CTCGGAGGTGCTCATATGAGTA 58.850 50.000 28.92 24.01 43.85 2.59
510 513 1.959985 CTCGGAGGTGCTCATATGAGT 59.040 52.381 28.92 13.07 43.85 3.41
511 514 2.228582 CTCTCGGAGGTGCTCATATGAG 59.771 54.545 25.64 25.64 44.75 2.90
512 515 2.158608 TCTCTCGGAGGTGCTCATATGA 60.159 50.000 5.07 5.07 31.08 2.15
513 516 2.030363 GTCTCTCGGAGGTGCTCATATG 60.030 54.545 4.96 0.00 31.08 1.78
514 517 2.235016 GTCTCTCGGAGGTGCTCATAT 58.765 52.381 4.96 0.00 31.08 1.78
515 518 1.681538 GTCTCTCGGAGGTGCTCATA 58.318 55.000 4.96 0.00 31.08 2.15
518 521 2.766400 CGGTCTCTCGGAGGTGCTC 61.766 68.421 4.96 0.00 0.00 4.26
520 523 2.750637 TCGGTCTCTCGGAGGTGC 60.751 66.667 4.96 0.00 0.00 5.01
521 524 2.766400 GCTCGGTCTCTCGGAGGTG 61.766 68.421 4.96 0.00 41.72 4.00
522 525 2.438795 GCTCGGTCTCTCGGAGGT 60.439 66.667 4.96 0.00 41.72 3.85
523 526 3.213402 GGCTCGGTCTCTCGGAGG 61.213 72.222 4.96 0.00 41.72 4.30
524 527 3.578272 CGGCTCGGTCTCTCGGAG 61.578 72.222 0.00 0.00 43.45 4.63
535 538 3.989698 AAGATGACGTGCCGGCTCG 62.990 63.158 40.17 40.17 35.04 5.03
538 541 2.434185 TCAAGATGACGTGCCGGC 60.434 61.111 22.73 22.73 34.27 6.13
539 542 0.179100 ATCTCAAGATGACGTGCCGG 60.179 55.000 0.00 0.00 32.68 6.13
540 543 1.325640 CAATCTCAAGATGACGTGCCG 59.674 52.381 0.00 0.00 34.49 5.69
541 544 2.349886 GTCAATCTCAAGATGACGTGCC 59.650 50.000 0.00 0.00 34.49 5.01
542 545 2.028523 CGTCAATCTCAAGATGACGTGC 59.971 50.000 22.61 0.00 43.10 5.34
543 546 3.501950 TCGTCAATCTCAAGATGACGTG 58.498 45.455 25.93 11.38 45.27 4.49
544 547 3.850122 TCGTCAATCTCAAGATGACGT 57.150 42.857 25.93 0.00 45.27 4.34
546 549 5.347342 AGACATCGTCAATCTCAAGATGAC 58.653 41.667 10.23 4.76 40.62 3.06
547 550 5.588958 AGACATCGTCAATCTCAAGATGA 57.411 39.130 10.23 0.00 40.62 2.92
548 551 6.091849 ACAAAGACATCGTCAATCTCAAGATG 59.908 38.462 2.63 2.63 42.95 2.90
549 552 6.169094 ACAAAGACATCGTCAATCTCAAGAT 58.831 36.000 0.00 0.00 34.60 2.40
551 554 5.852738 ACAAAGACATCGTCAATCTCAAG 57.147 39.130 0.00 0.00 34.60 3.02
552 555 6.455647 ACTACAAAGACATCGTCAATCTCAA 58.544 36.000 0.00 0.00 34.60 3.02
553 556 6.025749 ACTACAAAGACATCGTCAATCTCA 57.974 37.500 0.00 0.00 34.60 3.27
555 558 5.047306 TGGACTACAAAGACATCGTCAATCT 60.047 40.000 0.00 0.00 34.60 2.40
556 559 5.062308 GTGGACTACAAAGACATCGTCAATC 59.938 44.000 0.00 0.00 34.60 2.67
557 560 4.929808 GTGGACTACAAAGACATCGTCAAT 59.070 41.667 0.00 0.00 34.60 2.57
561 988 3.306088 CCTGTGGACTACAAAGACATCGT 60.306 47.826 0.00 0.00 36.45 3.73
562 989 3.056821 TCCTGTGGACTACAAAGACATCG 60.057 47.826 0.00 0.00 36.45 3.84
565 992 4.102524 ACATTCCTGTGGACTACAAAGACA 59.897 41.667 0.00 0.00 36.45 3.41
568 995 5.817816 GGATACATTCCTGTGGACTACAAAG 59.182 44.000 0.00 0.00 41.78 2.77
582 1009 3.741388 CGTTCAGTGGGAGGATACATTCC 60.741 52.174 0.00 0.00 45.85 3.01
583 1010 3.458189 CGTTCAGTGGGAGGATACATTC 58.542 50.000 0.00 0.00 41.41 2.67
585 1012 1.139058 GCGTTCAGTGGGAGGATACAT 59.861 52.381 0.00 0.00 41.41 2.29
587 1014 0.535335 TGCGTTCAGTGGGAGGATAC 59.465 55.000 0.00 0.00 0.00 2.24
590 1017 1.480212 ATGTGCGTTCAGTGGGAGGA 61.480 55.000 0.00 0.00 0.00 3.71
592 1019 1.354337 CGATGTGCGTTCAGTGGGAG 61.354 60.000 0.00 0.00 34.64 4.30
604 1031 2.125512 AGGCTTCCGACGATGTGC 60.126 61.111 0.00 0.00 0.00 4.57
605 1032 0.670546 AACAGGCTTCCGACGATGTG 60.671 55.000 0.00 0.00 0.00 3.21
606 1033 0.892755 TAACAGGCTTCCGACGATGT 59.107 50.000 0.00 0.00 0.00 3.06
607 1034 2.225068 ATAACAGGCTTCCGACGATG 57.775 50.000 0.00 0.00 0.00 3.84
608 1035 4.395959 TTTATAACAGGCTTCCGACGAT 57.604 40.909 0.00 0.00 0.00 3.73
609 1036 3.872511 TTTATAACAGGCTTCCGACGA 57.127 42.857 0.00 0.00 0.00 4.20
610 1037 3.493503 GGATTTATAACAGGCTTCCGACG 59.506 47.826 0.00 0.00 0.00 5.12
611 1038 4.448210 TGGATTTATAACAGGCTTCCGAC 58.552 43.478 0.00 0.00 0.00 4.79
612 1039 4.444306 CCTGGATTTATAACAGGCTTCCGA 60.444 45.833 7.47 0.00 44.55 4.55
613 1040 3.815401 CCTGGATTTATAACAGGCTTCCG 59.185 47.826 7.47 0.00 44.55 4.30
624 1051 9.261035 TGGTGCTTAAATTTTCCTGGATTTATA 57.739 29.630 0.00 0.00 30.36 0.98
625 1052 8.144862 TGGTGCTTAAATTTTCCTGGATTTAT 57.855 30.769 0.00 0.00 30.36 1.40
626 1053 7.546250 TGGTGCTTAAATTTTCCTGGATTTA 57.454 32.000 0.00 0.00 0.00 1.40
627 1054 6.432403 TGGTGCTTAAATTTTCCTGGATTT 57.568 33.333 0.00 0.00 0.00 2.17
628 1055 6.432403 TTGGTGCTTAAATTTTCCTGGATT 57.568 33.333 0.00 0.00 0.00 3.01
629 1056 6.013466 ACATTGGTGCTTAAATTTTCCTGGAT 60.013 34.615 0.00 0.00 0.00 3.41
630 1057 5.306678 ACATTGGTGCTTAAATTTTCCTGGA 59.693 36.000 0.00 0.00 0.00 3.86
631 1058 5.550290 ACATTGGTGCTTAAATTTTCCTGG 58.450 37.500 0.00 0.00 0.00 4.45
632 1059 6.222389 TGACATTGGTGCTTAAATTTTCCTG 58.778 36.000 0.00 0.00 0.00 3.86
633 1060 6.418057 TGACATTGGTGCTTAAATTTTCCT 57.582 33.333 0.00 0.00 0.00 3.36
634 1061 6.705825 ACTTGACATTGGTGCTTAAATTTTCC 59.294 34.615 0.00 0.00 0.00 3.13
635 1062 7.713764 ACTTGACATTGGTGCTTAAATTTTC 57.286 32.000 0.00 0.00 0.00 2.29
636 1063 9.206870 CATACTTGACATTGGTGCTTAAATTTT 57.793 29.630 0.00 0.00 0.00 1.82
637 1064 8.584157 TCATACTTGACATTGGTGCTTAAATTT 58.416 29.630 0.00 0.00 0.00 1.82
638 1065 8.121305 TCATACTTGACATTGGTGCTTAAATT 57.879 30.769 0.00 0.00 0.00 1.82
639 1066 7.611467 TCTCATACTTGACATTGGTGCTTAAAT 59.389 33.333 0.00 0.00 0.00 1.40
640 1067 6.939730 TCTCATACTTGACATTGGTGCTTAAA 59.060 34.615 0.00 0.00 0.00 1.52
641 1068 6.472016 TCTCATACTTGACATTGGTGCTTAA 58.528 36.000 0.00 0.00 0.00 1.85
642 1069 6.048732 TCTCATACTTGACATTGGTGCTTA 57.951 37.500 0.00 0.00 0.00 3.09
643 1070 4.910195 TCTCATACTTGACATTGGTGCTT 58.090 39.130 0.00 0.00 0.00 3.91
644 1071 4.558226 TCTCATACTTGACATTGGTGCT 57.442 40.909 0.00 0.00 0.00 4.40
645 1072 5.824904 AATCTCATACTTGACATTGGTGC 57.175 39.130 0.00 0.00 0.00 5.01
646 1073 7.281774 AGCTAAATCTCATACTTGACATTGGTG 59.718 37.037 0.00 0.00 0.00 4.17
647 1074 7.341805 AGCTAAATCTCATACTTGACATTGGT 58.658 34.615 0.00 0.00 0.00 3.67
648 1075 7.714377 AGAGCTAAATCTCATACTTGACATTGG 59.286 37.037 0.00 0.00 35.59 3.16
649 1076 8.659925 AGAGCTAAATCTCATACTTGACATTG 57.340 34.615 0.00 0.00 35.59 2.82
650 1077 8.885494 GAGAGCTAAATCTCATACTTGACATT 57.115 34.615 0.00 0.00 44.32 2.71
662 1089 6.249951 TCCCTACCTATGAGAGCTAAATCTC 58.750 44.000 0.00 0.00 45.01 2.75
663 1090 6.220881 TCCCTACCTATGAGAGCTAAATCT 57.779 41.667 0.00 0.00 0.00 2.40
664 1091 6.919775 TTCCCTACCTATGAGAGCTAAATC 57.080 41.667 0.00 0.00 0.00 2.17
665 1092 9.207868 GATATTCCCTACCTATGAGAGCTAAAT 57.792 37.037 0.00 0.00 0.00 1.40
666 1093 8.177456 TGATATTCCCTACCTATGAGAGCTAAA 58.823 37.037 0.00 0.00 0.00 1.85
667 1094 7.616150 GTGATATTCCCTACCTATGAGAGCTAA 59.384 40.741 0.00 0.00 0.00 3.09
668 1095 7.036498 AGTGATATTCCCTACCTATGAGAGCTA 60.036 40.741 0.00 0.00 0.00 3.32
669 1096 5.955355 GTGATATTCCCTACCTATGAGAGCT 59.045 44.000 0.00 0.00 0.00 4.09
670 1097 5.955355 AGTGATATTCCCTACCTATGAGAGC 59.045 44.000 0.00 0.00 0.00 4.09
671 1098 6.951198 ACAGTGATATTCCCTACCTATGAGAG 59.049 42.308 0.00 0.00 0.00 3.20
672 1099 6.864421 ACAGTGATATTCCCTACCTATGAGA 58.136 40.000 0.00 0.00 0.00 3.27
673 1100 7.233553 TGAACAGTGATATTCCCTACCTATGAG 59.766 40.741 0.00 0.00 0.00 2.90
674 1101 7.073208 TGAACAGTGATATTCCCTACCTATGA 58.927 38.462 0.00 0.00 0.00 2.15
675 1102 7.303182 TGAACAGTGATATTCCCTACCTATG 57.697 40.000 0.00 0.00 0.00 2.23
676 1103 7.202102 GGTTGAACAGTGATATTCCCTACCTAT 60.202 40.741 0.00 0.00 0.00 2.57
677 1104 6.099269 GGTTGAACAGTGATATTCCCTACCTA 59.901 42.308 0.00 0.00 0.00 3.08
678 1105 5.104485 GGTTGAACAGTGATATTCCCTACCT 60.104 44.000 0.00 0.00 0.00 3.08
679 1106 5.123936 GGTTGAACAGTGATATTCCCTACC 58.876 45.833 0.00 0.00 0.00 3.18
680 1107 4.809426 CGGTTGAACAGTGATATTCCCTAC 59.191 45.833 0.00 0.00 0.00 3.18
681 1108 4.468510 ACGGTTGAACAGTGATATTCCCTA 59.531 41.667 0.00 0.00 0.00 3.53
682 1109 3.263425 ACGGTTGAACAGTGATATTCCCT 59.737 43.478 0.00 0.00 0.00 4.20
683 1110 3.606687 ACGGTTGAACAGTGATATTCCC 58.393 45.455 0.00 0.00 0.00 3.97
684 1111 3.621715 GGACGGTTGAACAGTGATATTCC 59.378 47.826 5.71 0.00 0.00 3.01
685 1112 4.250464 TGGACGGTTGAACAGTGATATTC 58.750 43.478 5.71 0.00 0.00 1.75
686 1113 4.280436 TGGACGGTTGAACAGTGATATT 57.720 40.909 5.71 0.00 0.00 1.28
687 1114 3.973206 TGGACGGTTGAACAGTGATAT 57.027 42.857 5.71 0.00 0.00 1.63
688 1115 3.181464 TGTTGGACGGTTGAACAGTGATA 60.181 43.478 5.71 0.00 0.00 2.15
689 1116 2.218603 GTTGGACGGTTGAACAGTGAT 58.781 47.619 5.71 0.00 0.00 3.06
690 1117 1.066071 TGTTGGACGGTTGAACAGTGA 60.066 47.619 5.71 0.00 0.00 3.41
691 1118 1.374560 TGTTGGACGGTTGAACAGTG 58.625 50.000 5.71 0.00 0.00 3.66
692 1119 1.741145 GTTGTTGGACGGTTGAACAGT 59.259 47.619 0.00 0.00 31.50 3.55
693 1120 1.267832 CGTTGTTGGACGGTTGAACAG 60.268 52.381 0.00 0.00 39.27 3.16
694 1121 0.727970 CGTTGTTGGACGGTTGAACA 59.272 50.000 0.00 2.75 39.27 3.18
695 1122 1.008329 TCGTTGTTGGACGGTTGAAC 58.992 50.000 0.00 0.00 42.98 3.18
696 1123 1.956297 ATCGTTGTTGGACGGTTGAA 58.044 45.000 0.00 0.00 42.98 2.69
697 1124 1.868498 GAATCGTTGTTGGACGGTTGA 59.132 47.619 0.22 0.00 45.50 3.18
701 1128 0.321298 AGGGAATCGTTGTTGGACGG 60.321 55.000 0.00 0.00 42.98 4.79
702 1129 1.076332 GAGGGAATCGTTGTTGGACG 58.924 55.000 0.00 0.00 44.06 4.79
703 1130 1.076332 CGAGGGAATCGTTGTTGGAC 58.924 55.000 0.00 0.00 46.62 4.02
722 1149 4.393990 CGTTCACCCCTTAACTTCAATACC 59.606 45.833 0.00 0.00 0.00 2.73
723 1150 5.240121 TCGTTCACCCCTTAACTTCAATAC 58.760 41.667 0.00 0.00 0.00 1.89
724 1151 5.486735 TCGTTCACCCCTTAACTTCAATA 57.513 39.130 0.00 0.00 0.00 1.90
728 1155 3.497262 CACTTCGTTCACCCCTTAACTTC 59.503 47.826 0.00 0.00 0.00 3.01
729 1156 3.135167 TCACTTCGTTCACCCCTTAACTT 59.865 43.478 0.00 0.00 0.00 2.66
730 1157 2.701951 TCACTTCGTTCACCCCTTAACT 59.298 45.455 0.00 0.00 0.00 2.24
731 1158 3.116079 TCACTTCGTTCACCCCTTAAC 57.884 47.619 0.00 0.00 0.00 2.01
732 1159 4.618927 CGTATCACTTCGTTCACCCCTTAA 60.619 45.833 0.00 0.00 0.00 1.85
734 1161 2.353406 CGTATCACTTCGTTCACCCCTT 60.353 50.000 0.00 0.00 0.00 3.95
735 1162 1.203994 CGTATCACTTCGTTCACCCCT 59.796 52.381 0.00 0.00 0.00 4.79
736 1163 1.067354 ACGTATCACTTCGTTCACCCC 60.067 52.381 0.00 0.00 36.93 4.95
738 1165 5.630680 TCTTTAACGTATCACTTCGTTCACC 59.369 40.000 6.23 0.00 45.03 4.02
739 1166 6.680055 TCTTTAACGTATCACTTCGTTCAC 57.320 37.500 6.23 0.00 45.03 3.18
740 1167 6.309494 CCATCTTTAACGTATCACTTCGTTCA 59.691 38.462 6.23 0.00 45.03 3.18
743 1170 5.957798 TCCATCTTTAACGTATCACTTCGT 58.042 37.500 0.00 0.00 42.12 3.85
744 1171 6.880822 TTCCATCTTTAACGTATCACTTCG 57.119 37.500 0.00 0.00 0.00 3.79
745 1172 8.718734 ACTTTTCCATCTTTAACGTATCACTTC 58.281 33.333 0.00 0.00 0.00 3.01
746 1173 8.504005 CACTTTTCCATCTTTAACGTATCACTT 58.496 33.333 0.00 0.00 0.00 3.16
747 1174 7.119262 CCACTTTTCCATCTTTAACGTATCACT 59.881 37.037 0.00 0.00 0.00 3.41
748 1175 7.118680 TCCACTTTTCCATCTTTAACGTATCAC 59.881 37.037 0.00 0.00 0.00 3.06
749 1176 7.118680 GTCCACTTTTCCATCTTTAACGTATCA 59.881 37.037 0.00 0.00 0.00 2.15
750 1177 7.333672 AGTCCACTTTTCCATCTTTAACGTATC 59.666 37.037 0.00 0.00 0.00 2.24
751 1178 7.166167 AGTCCACTTTTCCATCTTTAACGTAT 58.834 34.615 0.00 0.00 0.00 3.06
752 1179 6.527423 AGTCCACTTTTCCATCTTTAACGTA 58.473 36.000 0.00 0.00 0.00 3.57
753 1180 5.374071 AGTCCACTTTTCCATCTTTAACGT 58.626 37.500 0.00 0.00 0.00 3.99
754 1181 5.941948 AGTCCACTTTTCCATCTTTAACG 57.058 39.130 0.00 0.00 0.00 3.18
768 1195 6.426646 ACATCTGTAGAGAAAAGTCCACTT 57.573 37.500 0.00 0.00 37.91 3.16
783 1210 5.938710 AGTCGAGACAAACTCTACATCTGTA 59.061 40.000 5.99 0.00 41.74 2.74
784 1211 4.762765 AGTCGAGACAAACTCTACATCTGT 59.237 41.667 5.99 0.00 41.74 3.41
785 1212 5.303747 AGTCGAGACAAACTCTACATCTG 57.696 43.478 5.99 0.00 41.74 2.90
786 1213 5.554822 GAGTCGAGACAAACTCTACATCT 57.445 43.478 5.99 0.00 41.74 2.90
803 1230 3.061295 CCACATGTCAATTTCGAGAGTCG 59.939 47.826 0.00 0.00 42.10 4.18
804 1231 3.372206 CCCACATGTCAATTTCGAGAGTC 59.628 47.826 0.00 0.00 0.00 3.36
805 1232 3.007940 TCCCACATGTCAATTTCGAGAGT 59.992 43.478 0.00 0.00 0.00 3.24
806 1233 3.599343 TCCCACATGTCAATTTCGAGAG 58.401 45.455 0.00 0.00 0.00 3.20
807 1234 3.694043 TCCCACATGTCAATTTCGAGA 57.306 42.857 0.00 0.00 0.00 4.04
808 1235 3.940852 TGATCCCACATGTCAATTTCGAG 59.059 43.478 0.00 0.00 0.00 4.04
809 1236 3.949132 TGATCCCACATGTCAATTTCGA 58.051 40.909 0.00 0.00 0.00 3.71
810 1237 4.700268 TTGATCCCACATGTCAATTTCG 57.300 40.909 0.00 0.00 0.00 3.46
811 1238 4.866486 GCTTTGATCCCACATGTCAATTTC 59.134 41.667 0.00 0.00 32.48 2.17
812 1239 4.322953 GGCTTTGATCCCACATGTCAATTT 60.323 41.667 0.00 0.00 32.48 1.82
813 1240 3.196254 GGCTTTGATCCCACATGTCAATT 59.804 43.478 0.00 0.00 32.48 2.32
814 1241 2.762327 GGCTTTGATCCCACATGTCAAT 59.238 45.455 0.00 0.00 32.48 2.57
815 1242 2.170166 GGCTTTGATCCCACATGTCAA 58.830 47.619 0.00 0.00 0.00 3.18
816 1243 1.616725 GGGCTTTGATCCCACATGTCA 60.617 52.381 0.00 0.00 43.37 3.58
817 1244 1.106285 GGGCTTTGATCCCACATGTC 58.894 55.000 0.00 0.00 43.37 3.06
818 1245 0.706433 AGGGCTTTGATCCCACATGT 59.294 50.000 0.00 0.00 46.36 3.21
819 1246 1.479323 CAAGGGCTTTGATCCCACATG 59.521 52.381 2.75 0.00 46.36 3.21
827 1254 3.700538 TGCAAGATACAAGGGCTTTGAT 58.299 40.909 16.87 5.28 39.21 2.57
898 1325 1.048724 CCGATGGTGCTTCCTCCCTA 61.049 60.000 0.00 0.00 37.07 3.53
913 1340 1.270625 TGCTTTGGTTTCGTCTCCGAT 60.271 47.619 0.00 0.00 43.80 4.18
1275 1710 3.834799 CCTCGCTGTCCCCGTACC 61.835 72.222 0.00 0.00 0.00 3.34
1299 1734 4.318021 CACCGTCACCGTCGTCGT 62.318 66.667 0.71 0.00 35.01 4.34
1300 1735 4.016629 TCACCGTCACCGTCGTCG 62.017 66.667 0.00 0.00 0.00 5.12
1512 1956 1.134220 TCCAGATGGCCAATAACCGAC 60.134 52.381 10.96 0.00 34.44 4.79
1522 1966 2.236766 CCAATTCAGATCCAGATGGCC 58.763 52.381 0.00 0.00 34.44 5.36
1611 2223 2.025969 CGCAGTCAGCACTCACCAG 61.026 63.158 0.00 0.00 46.13 4.00
1669 2282 6.426587 TGCTTCTAATAAAAGGGCATCTTCT 58.573 36.000 0.00 0.00 33.94 2.85
1670 2283 6.238869 CCTGCTTCTAATAAAAGGGCATCTTC 60.239 42.308 0.00 0.00 33.94 2.87
1677 2290 6.595682 TCTGATCCTGCTTCTAATAAAAGGG 58.404 40.000 0.00 0.00 0.00 3.95
1807 2420 1.579429 CCCTGTTAACGGCAGTTGC 59.421 57.895 12.79 5.90 41.35 4.17
1808 2421 1.241315 CCCCCTGTTAACGGCAGTTG 61.241 60.000 12.79 0.00 41.35 3.16
1834 2447 3.738281 GCACGTGCTATACTGATCCTTGT 60.738 47.826 32.55 0.00 38.21 3.16
1883 2496 5.199982 TCTAAATGGGAAAAGTGGGCATA 57.800 39.130 0.00 0.00 0.00 3.14
1884 2497 4.059773 TCTAAATGGGAAAAGTGGGCAT 57.940 40.909 0.00 0.00 0.00 4.40
1885 2498 3.534357 TCTAAATGGGAAAAGTGGGCA 57.466 42.857 0.00 0.00 0.00 5.36
1886 2499 4.222810 ACATTCTAAATGGGAAAAGTGGGC 59.777 41.667 4.82 0.00 0.00 5.36
1927 2540 9.663904 CACTCGAGAAAATAAAATCAAAGTGAA 57.336 29.630 21.68 0.00 32.94 3.18
1936 2549 9.277783 CCCTCATATCACTCGAGAAAATAAAAT 57.722 33.333 21.68 3.09 0.00 1.82
2087 2700 5.511386 ACTCCTGAAGAAATTCTGGTGAT 57.489 39.130 17.38 5.00 39.94 3.06
2134 2747 1.540267 CATACCTGCCCCGTTTTGAA 58.460 50.000 0.00 0.00 0.00 2.69
2194 2820 6.525629 AGGTGTCCATACTTAGATACATTGC 58.474 40.000 0.00 0.00 0.00 3.56
2266 2893 7.223260 TCACAACTCTATTTCGAGAAAGGTA 57.777 36.000 4.54 0.00 35.06 3.08
2485 3113 5.183713 TCACATTGAAGTGAAAATAGCAGGG 59.816 40.000 0.00 0.00 44.92 4.45
2525 3153 3.719871 AGGGAACAGGAACAAAGGTTTT 58.280 40.909 0.00 0.00 37.36 2.43
2533 3161 5.014755 ACCACATAATAAGGGAACAGGAACA 59.985 40.000 0.00 0.00 0.00 3.18
2550 3178 8.309656 TGATTGTTTATTGCATCAAACCACATA 58.690 29.630 16.66 0.90 34.44 2.29
2654 3282 2.486191 GGTGACTGGGGCATCTCTTATG 60.486 54.545 0.00 0.00 0.00 1.90
2830 3463 6.782082 AAGAAAAGAGAGAGCAAACCTTTT 57.218 33.333 0.00 0.00 39.06 2.27
2897 3531 1.202110 GCGGTGATGAAGTTCAGCATG 60.202 52.381 25.25 20.65 45.09 4.06
3008 3642 1.819632 GGCACCCCATGAAGCTACG 60.820 63.158 0.00 0.00 0.00 3.51
3050 3684 4.378459 CGAAAGTTCATGTCCAAGGTTAGC 60.378 45.833 0.00 0.00 0.00 3.09
3061 3695 7.360361 GGTAAACATTTCTCGAAAGTTCATGT 58.640 34.615 0.00 0.00 33.32 3.21
3083 3717 0.611618 CAAGCCATGCAGGTTGGGTA 60.612 55.000 9.82 0.00 43.93 3.69
3121 3755 0.254747 TTGCAGTATTTCCCTCGGGG 59.745 55.000 0.00 0.00 46.11 5.73
3153 3787 0.839946 ATTAGCCGCTGAGGATTGGT 59.160 50.000 2.16 0.00 45.00 3.67
3192 3826 2.102084 TGACTATGCTCATCACCAGCTC 59.898 50.000 0.00 0.00 37.79 4.09
3276 3910 3.815401 GCAGCAATATGTAACCCACTAGG 59.185 47.826 0.00 0.00 43.78 3.02
3352 3988 4.368067 TGCTCCCAGGGTTAATTAGTAGT 58.632 43.478 5.01 0.00 0.00 2.73
3353 3989 4.654262 TCTGCTCCCAGGGTTAATTAGTAG 59.346 45.833 5.01 3.31 39.61 2.57
3375 4012 5.804639 TGGGGCTAACACATATCACATATC 58.195 41.667 0.00 0.00 0.00 1.63
3453 4120 1.345715 ACAGGTCCCAATCCCCGATC 61.346 60.000 0.00 0.00 0.00 3.69
3484 4151 3.740832 GCAATTTTTAAGGGTGTGACTGC 59.259 43.478 0.00 0.00 0.00 4.40
3645 4403 3.300765 GCTGTGCCTGCTGCCTTT 61.301 61.111 0.00 0.00 40.16 3.11
3778 4538 7.437748 GGCAGTATATCAACTACTCAGACATT 58.562 38.462 0.00 0.00 0.00 2.71
3779 4539 6.294231 CGGCAGTATATCAACTACTCAGACAT 60.294 42.308 0.00 0.00 0.00 3.06
3781 4541 5.238868 TCGGCAGTATATCAACTACTCAGAC 59.761 44.000 0.00 0.00 0.00 3.51
3782 4542 5.374071 TCGGCAGTATATCAACTACTCAGA 58.626 41.667 0.00 0.00 0.00 3.27
3783 4543 5.690997 TCGGCAGTATATCAACTACTCAG 57.309 43.478 0.00 0.00 0.00 3.35
3784 4544 6.264518 TCAATCGGCAGTATATCAACTACTCA 59.735 38.462 0.00 0.00 0.00 3.41
3839 4599 2.947243 GCCTCAATCCTTCAAGCATCCA 60.947 50.000 0.00 0.00 0.00 3.41
3871 4631 2.293122 CCGAGCCTTCAATCAACAAACA 59.707 45.455 0.00 0.00 0.00 2.83
3918 4678 3.879998 TGGCCTATTTACATTCGAGCAA 58.120 40.909 3.32 0.00 0.00 3.91
3942 4702 2.202479 GCTTCACGCGGCCAAATC 60.202 61.111 12.47 0.00 0.00 2.17
3950 4710 1.439365 GCTTCAGTTGCTTCACGCG 60.439 57.895 3.53 3.53 43.27 6.01
4026 4786 6.801862 GTGATTCACAAAGTTAATACTGGCAC 59.198 38.462 11.93 0.00 32.57 5.01
4033 4793 6.072175 GGTGCAGGTGATTCACAAAGTTAATA 60.072 38.462 18.09 0.00 35.86 0.98
4036 4796 3.568007 GGTGCAGGTGATTCACAAAGTTA 59.432 43.478 18.09 0.00 35.86 2.24
4049 4809 4.037923 GGGTATATTCATTTGGTGCAGGTG 59.962 45.833 0.00 0.00 0.00 4.00
4051 4811 4.037923 GTGGGTATATTCATTTGGTGCAGG 59.962 45.833 0.00 0.00 0.00 4.85
4069 4829 8.318412 GGAATAAAAATATCCAAACAAGTGGGT 58.682 33.333 0.00 0.00 39.34 4.51
4125 4885 6.067263 TCTGGTAGTACAATTGTTTGCAAC 57.933 37.500 17.78 8.37 37.44 4.17
4353 5126 2.225167 TGTAAAATTGGGTGGGTCTCCC 60.225 50.000 0.00 0.00 45.71 4.30
4574 5347 5.649602 TTTTTGCCAACTTCTATTTTGCG 57.350 34.783 0.00 0.00 0.00 4.85
4735 5508 0.040204 AAATGCTCCTTCTGGGGGTG 59.960 55.000 0.00 0.00 38.03 4.61
4754 5527 9.542462 CTTTGACTTCCGTTGATTAATCCTATA 57.458 33.333 12.90 0.00 0.00 1.31
4782 5555 6.563422 TGAAATATTGTTGACTTATGCCTGC 58.437 36.000 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.