Multiple sequence alignment - TraesCS5D01G252500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G252500 chr5D 100.000 3008 0 0 1 3008 358224545 358221538 0.000000e+00 5555.0
1 TraesCS5D01G252500 chr5D 98.895 181 2 0 1 181 504456605 504456425 1.040000e-84 324.0
2 TraesCS5D01G252500 chr5D 98.895 181 2 0 1 181 558263795 558263975 1.040000e-84 324.0
3 TraesCS5D01G252500 chr5B 94.680 2331 64 21 668 2949 423363609 423361290 0.000000e+00 3563.0
4 TraesCS5D01G252500 chr5B 93.038 158 10 1 188 345 423364873 423364717 2.330000e-56 230.0
5 TraesCS5D01G252500 chr5B 89.655 58 5 1 619 675 423364503 423364446 4.160000e-09 73.1
6 TraesCS5D01G252500 chr5A 92.020 2030 58 33 617 2600 459002298 459000327 0.000000e+00 2756.0
7 TraesCS5D01G252500 chr6D 98.889 180 2 0 1 180 461928280 461928101 3.740000e-84 322.0
8 TraesCS5D01G252500 chr6D 74.648 213 44 8 1272 1482 462422998 462423202 5.340000e-13 86.1
9 TraesCS5D01G252500 chr2D 97.849 186 4 0 1 186 20199433 20199248 3.740000e-84 322.0
10 TraesCS5D01G252500 chr1D 96.875 192 6 0 1 192 11434552 11434743 3.740000e-84 322.0
11 TraesCS5D01G252500 chr3D 97.340 188 4 1 1 187 26779100 26779287 4.840000e-83 318.0
12 TraesCS5D01G252500 chr3D 96.392 194 6 1 1 193 594595717 594595524 4.840000e-83 318.0
13 TraesCS5D01G252500 chr3D 96.825 189 6 0 1 189 607569174 607569362 1.740000e-82 316.0
14 TraesCS5D01G252500 chr7D 96.825 189 5 1 1 189 12438781 12438594 6.260000e-82 315.0
15 TraesCS5D01G252500 chr6B 73.362 229 52 7 1272 1498 704890693 704890914 3.220000e-10 76.8
16 TraesCS5D01G252500 chr2B 100.000 28 0 0 1119 1146 11237220 11237247 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G252500 chr5D 358221538 358224545 3007 True 5555.0 5555 100.000000 1 3008 1 chr5D.!!$R1 3007
1 TraesCS5D01G252500 chr5B 423361290 423364873 3583 True 1288.7 3563 92.457667 188 2949 3 chr5B.!!$R1 2761
2 TraesCS5D01G252500 chr5A 459000327 459002298 1971 True 2756.0 2756 92.020000 617 2600 1 chr5A.!!$R1 1983

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
325 326 0.031716 TCTCAGGCTAGGCAGTGGAT 60.032 55.0 19.70 0.0 0.0 3.41 F
984 1901 0.302890 CTCATCATTCGCGACCAAGC 59.697 55.0 9.15 0.0 0.0 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1165 2085 0.681887 TCCTTCATCTCGGCGGTACA 60.682 55.0 7.21 0.0 0.00 2.90 R
2719 3686 0.037046 ATCACGACGGGGTAACAACC 60.037 55.0 0.00 0.0 39.74 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.361737 GACCAAAGGCCCTCCTGC 60.362 66.667 0.00 0.00 43.40 4.85
53 54 3.402681 CCACGTGGAGGCCCATCT 61.403 66.667 31.31 0.00 45.68 2.90
54 55 2.124983 CACGTGGAGGCCCATCTG 60.125 66.667 7.95 0.00 45.68 2.90
55 56 2.607750 ACGTGGAGGCCCATCTGT 60.608 61.111 0.00 0.00 45.68 3.41
56 57 2.187946 CGTGGAGGCCCATCTGTC 59.812 66.667 0.00 0.00 45.68 3.51
57 58 2.592308 GTGGAGGCCCATCTGTCC 59.408 66.667 0.00 0.00 45.68 4.02
58 59 2.692368 TGGAGGCCCATCTGTCCC 60.692 66.667 0.00 0.00 37.58 4.46
59 60 3.866582 GGAGGCCCATCTGTCCCG 61.867 72.222 0.00 0.00 0.00 5.14
60 61 3.866582 GAGGCCCATCTGTCCCGG 61.867 72.222 0.00 0.00 0.00 5.73
61 62 4.741239 AGGCCCATCTGTCCCGGT 62.741 66.667 0.00 0.00 0.00 5.28
62 63 3.728373 GGCCCATCTGTCCCGGTT 61.728 66.667 0.00 0.00 0.00 4.44
63 64 2.124695 GCCCATCTGTCCCGGTTC 60.125 66.667 0.00 0.00 0.00 3.62
64 65 2.186903 CCCATCTGTCCCGGTTCG 59.813 66.667 0.00 0.00 0.00 3.95
65 66 2.656069 CCCATCTGTCCCGGTTCGT 61.656 63.158 0.00 0.00 0.00 3.85
66 67 1.447838 CCATCTGTCCCGGTTCGTG 60.448 63.158 0.00 0.00 0.00 4.35
67 68 1.292223 CATCTGTCCCGGTTCGTGT 59.708 57.895 0.00 0.00 0.00 4.49
68 69 0.528924 CATCTGTCCCGGTTCGTGTA 59.471 55.000 0.00 0.00 0.00 2.90
69 70 1.067425 CATCTGTCCCGGTTCGTGTAA 60.067 52.381 0.00 0.00 0.00 2.41
70 71 0.599558 TCTGTCCCGGTTCGTGTAAG 59.400 55.000 0.00 0.00 0.00 2.34
71 72 0.599558 CTGTCCCGGTTCGTGTAAGA 59.400 55.000 0.00 0.00 0.00 2.10
72 73 1.000060 CTGTCCCGGTTCGTGTAAGAA 60.000 52.381 0.00 0.00 0.00 2.52
78 79 3.892200 GTTCGTGTAAGAACCGGGA 57.108 52.632 6.32 0.00 43.33 5.14
79 80 1.422388 GTTCGTGTAAGAACCGGGAC 58.578 55.000 6.32 0.00 43.33 4.46
80 81 1.000171 GTTCGTGTAAGAACCGGGACT 60.000 52.381 6.32 0.73 43.33 3.85
81 82 2.198827 TCGTGTAAGAACCGGGACTA 57.801 50.000 6.32 0.00 0.00 2.59
82 83 2.513753 TCGTGTAAGAACCGGGACTAA 58.486 47.619 6.32 0.00 0.00 2.24
83 84 2.890311 TCGTGTAAGAACCGGGACTAAA 59.110 45.455 6.32 0.00 0.00 1.85
84 85 3.057315 TCGTGTAAGAACCGGGACTAAAG 60.057 47.826 6.32 0.00 0.00 1.85
85 86 3.593096 GTGTAAGAACCGGGACTAAAGG 58.407 50.000 6.32 0.00 0.00 3.11
86 87 2.568509 TGTAAGAACCGGGACTAAAGGG 59.431 50.000 6.32 0.00 0.00 3.95
87 88 0.327259 AAGAACCGGGACTAAAGGGC 59.673 55.000 6.32 0.00 0.00 5.19
88 89 0.546988 AGAACCGGGACTAAAGGGCT 60.547 55.000 6.32 0.00 0.00 5.19
89 90 1.197812 GAACCGGGACTAAAGGGCTA 58.802 55.000 6.32 0.00 0.00 3.93
90 91 1.138464 GAACCGGGACTAAAGGGCTAG 59.862 57.143 6.32 0.00 0.00 3.42
91 92 0.337428 ACCGGGACTAAAGGGCTAGA 59.663 55.000 6.32 0.00 0.00 2.43
92 93 1.041437 CCGGGACTAAAGGGCTAGAG 58.959 60.000 0.00 0.00 0.00 2.43
93 94 0.389757 CGGGACTAAAGGGCTAGAGC 59.610 60.000 0.00 0.00 41.14 4.09
94 95 1.497161 GGGACTAAAGGGCTAGAGCA 58.503 55.000 3.54 0.00 44.36 4.26
95 96 2.050918 GGGACTAAAGGGCTAGAGCAT 58.949 52.381 3.54 0.00 44.36 3.79
96 97 2.439880 GGGACTAAAGGGCTAGAGCATT 59.560 50.000 3.54 0.00 44.36 3.56
97 98 3.646637 GGGACTAAAGGGCTAGAGCATTA 59.353 47.826 3.54 0.00 44.36 1.90
98 99 4.262678 GGGACTAAAGGGCTAGAGCATTAG 60.263 50.000 3.54 10.57 44.36 1.73
99 100 4.345547 GGACTAAAGGGCTAGAGCATTAGT 59.654 45.833 18.58 18.58 43.00 2.24
100 101 5.539193 GGACTAAAGGGCTAGAGCATTAGTA 59.461 44.000 18.56 1.12 41.75 1.82
101 102 6.041751 GGACTAAAGGGCTAGAGCATTAGTAA 59.958 42.308 18.56 0.00 41.75 2.24
102 103 6.818233 ACTAAAGGGCTAGAGCATTAGTAAC 58.182 40.000 17.72 0.00 40.86 2.50
103 104 4.323553 AAGGGCTAGAGCATTAGTAACG 57.676 45.455 3.54 0.00 44.36 3.18
104 105 3.563223 AGGGCTAGAGCATTAGTAACGA 58.437 45.455 3.54 0.00 44.36 3.85
105 106 3.318557 AGGGCTAGAGCATTAGTAACGAC 59.681 47.826 3.54 0.00 44.36 4.34
106 107 3.552478 GGGCTAGAGCATTAGTAACGACC 60.552 52.174 3.54 0.00 44.36 4.79
107 108 3.552478 GGCTAGAGCATTAGTAACGACCC 60.552 52.174 3.54 0.00 44.36 4.46
108 109 3.318557 GCTAGAGCATTAGTAACGACCCT 59.681 47.826 0.00 0.00 41.59 4.34
109 110 4.202131 GCTAGAGCATTAGTAACGACCCTT 60.202 45.833 0.00 0.00 41.59 3.95
110 111 4.820894 AGAGCATTAGTAACGACCCTTT 57.179 40.909 0.00 0.00 0.00 3.11
111 112 5.927281 AGAGCATTAGTAACGACCCTTTA 57.073 39.130 0.00 0.00 0.00 1.85
112 113 5.903810 AGAGCATTAGTAACGACCCTTTAG 58.096 41.667 0.00 0.00 0.00 1.85
113 114 5.421374 AGAGCATTAGTAACGACCCTTTAGT 59.579 40.000 0.00 0.00 0.00 2.24
114 115 5.658468 AGCATTAGTAACGACCCTTTAGTC 58.342 41.667 0.00 0.00 0.00 2.59
115 116 4.807834 GCATTAGTAACGACCCTTTAGTCC 59.192 45.833 0.00 0.00 32.91 3.85
116 117 5.354767 CATTAGTAACGACCCTTTAGTCCC 58.645 45.833 0.00 0.00 32.91 4.46
117 118 1.821136 AGTAACGACCCTTTAGTCCCG 59.179 52.381 0.00 0.00 32.91 5.14
118 119 1.134995 GTAACGACCCTTTAGTCCCGG 60.135 57.143 0.00 0.00 32.91 5.73
119 120 0.833409 AACGACCCTTTAGTCCCGGT 60.833 55.000 0.00 0.00 32.91 5.28
120 121 0.833409 ACGACCCTTTAGTCCCGGTT 60.833 55.000 0.00 0.00 32.91 4.44
121 122 0.108472 CGACCCTTTAGTCCCGGTTC 60.108 60.000 0.00 0.00 32.91 3.62
122 123 0.978907 GACCCTTTAGTCCCGGTTCA 59.021 55.000 0.00 0.00 0.00 3.18
123 124 1.348696 GACCCTTTAGTCCCGGTTCAA 59.651 52.381 0.00 0.00 0.00 2.69
124 125 1.776063 ACCCTTTAGTCCCGGTTCAAA 59.224 47.619 0.00 0.00 0.00 2.69
125 126 2.175284 ACCCTTTAGTCCCGGTTCAAAA 59.825 45.455 0.00 0.00 0.00 2.44
126 127 3.224269 CCCTTTAGTCCCGGTTCAAAAA 58.776 45.455 0.00 0.00 0.00 1.94
127 128 3.005050 CCCTTTAGTCCCGGTTCAAAAAC 59.995 47.826 0.00 0.00 34.46 2.43
136 137 2.963548 GGTTCAAAAACCGGGACAAA 57.036 45.000 6.32 0.00 45.33 2.83
137 138 3.248495 GGTTCAAAAACCGGGACAAAA 57.752 42.857 6.32 0.00 45.33 2.44
138 139 3.191669 GGTTCAAAAACCGGGACAAAAG 58.808 45.455 6.32 0.00 45.33 2.27
139 140 3.191669 GTTCAAAAACCGGGACAAAAGG 58.808 45.455 6.32 0.00 0.00 3.11
140 141 1.137282 TCAAAAACCGGGACAAAAGGC 59.863 47.619 6.32 0.00 0.00 4.35
141 142 0.466543 AAAAACCGGGACAAAAGGCC 59.533 50.000 6.32 0.00 0.00 5.19
142 143 1.404479 AAAACCGGGACAAAAGGCCC 61.404 55.000 6.32 0.00 41.11 5.80
143 144 2.306715 AAACCGGGACAAAAGGCCCT 62.307 55.000 6.32 0.00 42.40 5.19
144 145 2.117423 CCGGGACAAAAGGCCCTT 59.883 61.111 4.64 0.00 42.40 3.95
145 146 1.381076 CCGGGACAAAAGGCCCTTA 59.619 57.895 4.64 0.00 42.40 2.69
146 147 0.963856 CCGGGACAAAAGGCCCTTAC 60.964 60.000 4.64 0.00 42.40 2.34
147 148 0.963856 CGGGACAAAAGGCCCTTACC 60.964 60.000 4.64 0.00 42.40 2.85
148 149 0.113580 GGGACAAAAGGCCCTTACCA 59.886 55.000 0.00 0.00 41.31 3.25
149 150 1.481615 GGGACAAAAGGCCCTTACCAA 60.482 52.381 0.00 0.00 41.31 3.67
150 151 1.616865 GGACAAAAGGCCCTTACCAAC 59.383 52.381 0.00 0.00 0.00 3.77
151 152 1.616865 GACAAAAGGCCCTTACCAACC 59.383 52.381 0.00 0.00 0.00 3.77
152 153 0.601057 CAAAAGGCCCTTACCAACCG 59.399 55.000 0.00 0.00 0.00 4.44
153 154 0.541063 AAAAGGCCCTTACCAACCGG 60.541 55.000 0.00 0.00 38.77 5.28
154 155 2.435120 AAAGGCCCTTACCAACCGGG 62.435 60.000 6.32 0.00 44.81 5.73
155 156 3.332385 GGCCCTTACCAACCGGGA 61.332 66.667 6.32 0.00 40.55 5.14
156 157 2.045634 GCCCTTACCAACCGGGAC 60.046 66.667 6.32 0.00 40.55 4.46
157 158 2.897762 GCCCTTACCAACCGGGACA 61.898 63.158 6.32 0.00 40.55 4.02
158 159 1.298667 CCCTTACCAACCGGGACAG 59.701 63.158 6.32 0.00 40.55 3.51
159 160 1.196104 CCCTTACCAACCGGGACAGA 61.196 60.000 6.32 0.00 40.55 3.41
160 161 0.909623 CCTTACCAACCGGGACAGAT 59.090 55.000 6.32 0.00 41.15 2.90
161 162 1.406887 CCTTACCAACCGGGACAGATG 60.407 57.143 6.32 0.00 41.15 2.90
162 163 1.553248 CTTACCAACCGGGACAGATGA 59.447 52.381 6.32 0.00 41.15 2.92
163 164 0.899720 TACCAACCGGGACAGATGAC 59.100 55.000 6.32 0.00 41.15 3.06
164 165 1.078426 CCAACCGGGACAGATGACC 60.078 63.158 6.32 0.00 40.01 4.02
165 166 1.078426 CAACCGGGACAGATGACCC 60.078 63.158 6.32 9.97 44.81 4.46
166 167 1.229529 AACCGGGACAGATGACCCT 60.230 57.895 16.56 0.00 45.84 4.34
167 168 0.840722 AACCGGGACAGATGACCCTT 60.841 55.000 16.56 4.36 45.84 3.95
168 169 0.840722 ACCGGGACAGATGACCCTTT 60.841 55.000 16.56 2.55 45.84 3.11
169 170 0.328258 CCGGGACAGATGACCCTTTT 59.672 55.000 16.56 0.00 45.84 2.27
170 171 1.271926 CCGGGACAGATGACCCTTTTT 60.272 52.381 16.56 0.00 45.84 1.94
171 172 2.084546 CGGGACAGATGACCCTTTTTC 58.915 52.381 16.56 0.00 45.84 2.29
172 173 2.290323 CGGGACAGATGACCCTTTTTCT 60.290 50.000 16.56 0.00 45.84 2.52
173 174 3.055385 CGGGACAGATGACCCTTTTTCTA 60.055 47.826 16.56 0.00 45.84 2.10
174 175 4.262617 GGGACAGATGACCCTTTTTCTAC 58.737 47.826 12.40 0.00 44.84 2.59
175 176 4.019231 GGGACAGATGACCCTTTTTCTACT 60.019 45.833 12.40 0.00 44.84 2.57
176 177 5.189145 GGGACAGATGACCCTTTTTCTACTA 59.811 44.000 12.40 0.00 44.84 1.82
177 178 6.342111 GGACAGATGACCCTTTTTCTACTAG 58.658 44.000 0.00 0.00 0.00 2.57
178 179 6.070710 GGACAGATGACCCTTTTTCTACTAGT 60.071 42.308 0.00 0.00 0.00 2.57
179 180 6.702329 ACAGATGACCCTTTTTCTACTAGTG 58.298 40.000 5.39 0.00 0.00 2.74
180 181 6.497259 ACAGATGACCCTTTTTCTACTAGTGA 59.503 38.462 5.39 0.00 0.00 3.41
181 182 7.181125 ACAGATGACCCTTTTTCTACTAGTGAT 59.819 37.037 5.39 0.00 0.00 3.06
182 183 8.696374 CAGATGACCCTTTTTCTACTAGTGATA 58.304 37.037 5.39 0.00 0.00 2.15
183 184 8.919145 AGATGACCCTTTTTCTACTAGTGATAG 58.081 37.037 5.39 0.00 0.00 2.08
184 185 6.875076 TGACCCTTTTTCTACTAGTGATAGC 58.125 40.000 5.39 0.00 0.00 2.97
185 186 6.668283 TGACCCTTTTTCTACTAGTGATAGCT 59.332 38.462 5.39 0.00 0.00 3.32
186 187 7.837689 TGACCCTTTTTCTACTAGTGATAGCTA 59.162 37.037 5.39 0.00 0.00 3.32
289 290 6.871492 TGCGAATTCAACTTGTGATAGTCTAA 59.129 34.615 6.22 0.00 35.70 2.10
290 291 7.549134 TGCGAATTCAACTTGTGATAGTCTAAT 59.451 33.333 6.22 0.00 35.70 1.73
291 292 9.031360 GCGAATTCAACTTGTGATAGTCTAATA 57.969 33.333 6.22 0.00 35.70 0.98
310 311 1.283347 ATCTGGCCTTGCTCTTCTCA 58.717 50.000 3.32 0.00 0.00 3.27
325 326 0.031716 TCTCAGGCTAGGCAGTGGAT 60.032 55.000 19.70 0.00 0.00 3.41
326 327 0.835941 CTCAGGCTAGGCAGTGGATT 59.164 55.000 19.70 0.00 0.00 3.01
329 330 1.825622 GGCTAGGCAGTGGATTGGC 60.826 63.158 12.16 0.00 43.41 4.52
332 333 1.078497 TAGGCAGTGGATTGGCACG 60.078 57.895 2.43 0.00 45.32 5.34
334 335 2.268076 GGCAGTGGATTGGCACGTT 61.268 57.895 0.00 0.00 42.68 3.99
335 336 1.210155 GCAGTGGATTGGCACGTTC 59.790 57.895 0.00 0.00 0.00 3.95
341 342 2.794350 GTGGATTGGCACGTTCAAAAAG 59.206 45.455 5.36 0.00 0.00 2.27
343 344 3.131223 TGGATTGGCACGTTCAAAAAGAA 59.869 39.130 5.36 0.00 0.00 2.52
344 345 3.735746 GGATTGGCACGTTCAAAAAGAAG 59.264 43.478 5.36 0.00 36.78 2.85
345 346 2.861462 TGGCACGTTCAAAAAGAAGG 57.139 45.000 0.00 0.00 45.28 3.46
346 347 1.407258 TGGCACGTTCAAAAAGAAGGG 59.593 47.619 0.00 0.00 44.35 3.95
347 348 1.487482 GCACGTTCAAAAAGAAGGGC 58.513 50.000 0.00 0.00 44.35 5.19
348 349 1.868109 GCACGTTCAAAAAGAAGGGCC 60.868 52.381 0.00 0.00 44.35 5.80
349 350 1.407258 CACGTTCAAAAAGAAGGGCCA 59.593 47.619 6.18 0.00 44.35 5.36
350 351 2.035832 CACGTTCAAAAAGAAGGGCCAT 59.964 45.455 6.18 0.00 44.35 4.40
351 352 3.254657 CACGTTCAAAAAGAAGGGCCATA 59.745 43.478 6.18 0.00 44.35 2.74
353 354 4.526650 ACGTTCAAAAAGAAGGGCCATAAT 59.473 37.500 6.18 0.00 44.35 1.28
354 355 5.712917 ACGTTCAAAAAGAAGGGCCATAATA 59.287 36.000 6.18 0.00 44.35 0.98
355 356 6.127730 ACGTTCAAAAAGAAGGGCCATAATAG 60.128 38.462 6.18 0.00 44.35 1.73
356 357 6.094881 CGTTCAAAAAGAAGGGCCATAATAGA 59.905 38.462 6.18 0.00 38.21 1.98
357 358 7.258441 GTTCAAAAAGAAGGGCCATAATAGAC 58.742 38.462 6.18 0.00 36.78 2.59
358 359 6.489603 TCAAAAAGAAGGGCCATAATAGACA 58.510 36.000 6.18 0.00 0.00 3.41
359 360 6.377146 TCAAAAAGAAGGGCCATAATAGACAC 59.623 38.462 6.18 0.00 0.00 3.67
360 361 3.753294 AGAAGGGCCATAATAGACACG 57.247 47.619 6.18 0.00 0.00 4.49
361 362 3.039011 AGAAGGGCCATAATAGACACGT 58.961 45.455 6.18 0.00 0.00 4.49
362 363 2.910688 AGGGCCATAATAGACACGTG 57.089 50.000 15.48 15.48 0.00 4.49
363 364 2.394632 AGGGCCATAATAGACACGTGA 58.605 47.619 25.01 0.00 0.00 4.35
364 365 2.102588 AGGGCCATAATAGACACGTGAC 59.897 50.000 25.01 17.23 0.00 3.67
366 367 2.864343 GGCCATAATAGACACGTGACAC 59.136 50.000 25.01 12.86 0.00 3.67
368 369 3.732774 GCCATAATAGACACGTGACACGA 60.733 47.826 33.12 11.87 46.05 4.35
369 370 4.417506 CCATAATAGACACGTGACACGAA 58.582 43.478 33.12 13.34 46.05 3.85
370 371 5.041287 CCATAATAGACACGTGACACGAAT 58.959 41.667 33.12 20.07 46.05 3.34
371 372 6.203647 CCATAATAGACACGTGACACGAATA 58.796 40.000 33.12 18.60 46.05 1.75
372 373 6.861572 CCATAATAGACACGTGACACGAATAT 59.138 38.462 33.12 19.16 46.05 1.28
373 374 8.019094 CCATAATAGACACGTGACACGAATATA 58.981 37.037 33.12 20.53 46.05 0.86
374 375 8.838009 CATAATAGACACGTGACACGAATATAC 58.162 37.037 33.12 16.64 46.05 1.47
375 376 3.677601 AGACACGTGACACGAATATACG 58.322 45.455 33.12 13.99 46.05 3.06
376 377 2.780014 GACACGTGACACGAATATACGG 59.220 50.000 33.12 13.55 46.05 4.02
383 384 2.793232 GACACGAATATACGGCAACTCC 59.207 50.000 0.00 0.00 37.61 3.85
395 422 1.594833 CAACTCCGAACGGGGATGA 59.405 57.895 20.21 0.00 40.51 2.92
403 430 1.196808 CGAACGGGGATGACAACTTTG 59.803 52.381 0.00 0.00 0.00 2.77
404 431 2.227194 GAACGGGGATGACAACTTTGT 58.773 47.619 0.00 0.00 45.65 2.83
416 443 7.865385 GGATGACAACTTTGTTTGTAAAGCATA 59.135 33.333 0.00 0.00 42.43 3.14
417 444 9.243637 GATGACAACTTTGTTTGTAAAGCATAA 57.756 29.630 0.00 0.00 42.43 1.90
473 510 9.717942 TTTTGGATTTTTATTTCGGATGACAAT 57.282 25.926 0.00 0.00 0.00 2.71
502 542 2.370718 AAAAATGGCATGCCCGGAA 58.629 47.368 33.44 15.97 35.87 4.30
509 549 2.908940 CATGCCCGGAATGCTCCC 60.909 66.667 0.73 0.00 38.71 4.30
511 551 1.770110 ATGCCCGGAATGCTCCCTA 60.770 57.895 0.73 0.00 38.71 3.53
512 552 1.772819 ATGCCCGGAATGCTCCCTAG 61.773 60.000 0.73 0.00 38.71 3.02
522 562 2.261671 CTCCCTAGCACACGCGTT 59.738 61.111 10.22 0.00 45.49 4.84
526 566 1.349259 CCCTAGCACACGCGTTACAC 61.349 60.000 10.22 0.00 45.49 2.90
531 571 1.990563 AGCACACGCGTTACACTTATC 59.009 47.619 10.22 0.00 45.49 1.75
537 577 5.949787 CACACGCGTTACACTTATCATTTAC 59.050 40.000 10.22 0.00 0.00 2.01
538 578 5.865552 ACACGCGTTACACTTATCATTTACT 59.134 36.000 10.22 0.00 0.00 2.24
539 579 6.034256 ACACGCGTTACACTTATCATTTACTC 59.966 38.462 10.22 0.00 0.00 2.59
540 580 5.517770 ACGCGTTACACTTATCATTTACTCC 59.482 40.000 5.58 0.00 0.00 3.85
541 581 5.051240 CGCGTTACACTTATCATTTACTCCC 60.051 44.000 0.00 0.00 0.00 4.30
542 582 6.047231 GCGTTACACTTATCATTTACTCCCT 58.953 40.000 0.00 0.00 0.00 4.20
543 583 6.200475 GCGTTACACTTATCATTTACTCCCTC 59.800 42.308 0.00 0.00 0.00 4.30
544 584 6.700520 CGTTACACTTATCATTTACTCCCTCC 59.299 42.308 0.00 0.00 0.00 4.30
545 585 5.277857 ACACTTATCATTTACTCCCTCCG 57.722 43.478 0.00 0.00 0.00 4.63
546 586 4.715297 ACACTTATCATTTACTCCCTCCGT 59.285 41.667 0.00 0.00 0.00 4.69
548 588 5.753921 CACTTATCATTTACTCCCTCCGTTC 59.246 44.000 0.00 0.00 0.00 3.95
549 589 5.661759 ACTTATCATTTACTCCCTCCGTTCT 59.338 40.000 0.00 0.00 0.00 3.01
550 590 6.837568 ACTTATCATTTACTCCCTCCGTTCTA 59.162 38.462 0.00 0.00 0.00 2.10
551 591 7.343833 ACTTATCATTTACTCCCTCCGTTCTAA 59.656 37.037 0.00 0.00 0.00 2.10
552 592 6.749036 ATCATTTACTCCCTCCGTTCTAAT 57.251 37.500 0.00 0.00 0.00 1.73
553 593 6.555463 TCATTTACTCCCTCCGTTCTAATT 57.445 37.500 0.00 0.00 0.00 1.40
554 594 6.954232 TCATTTACTCCCTCCGTTCTAATTT 58.046 36.000 0.00 0.00 0.00 1.82
555 595 8.081517 TCATTTACTCCCTCCGTTCTAATTTA 57.918 34.615 0.00 0.00 0.00 1.40
556 596 7.983484 TCATTTACTCCCTCCGTTCTAATTTAC 59.017 37.037 0.00 0.00 0.00 2.01
557 597 7.486407 TTTACTCCCTCCGTTCTAATTTACT 57.514 36.000 0.00 0.00 0.00 2.24
558 598 7.486407 TTACTCCCTCCGTTCTAATTTACTT 57.514 36.000 0.00 0.00 0.00 2.24
559 599 5.731591 ACTCCCTCCGTTCTAATTTACTTG 58.268 41.667 0.00 0.00 0.00 3.16
560 600 5.247792 ACTCCCTCCGTTCTAATTTACTTGT 59.752 40.000 0.00 0.00 0.00 3.16
561 601 5.727434 TCCCTCCGTTCTAATTTACTTGTC 58.273 41.667 0.00 0.00 0.00 3.18
562 602 4.565564 CCCTCCGTTCTAATTTACTTGTCG 59.434 45.833 0.00 0.00 0.00 4.35
563 603 5.166398 CCTCCGTTCTAATTTACTTGTCGT 58.834 41.667 0.00 0.00 0.00 4.34
564 604 5.061808 CCTCCGTTCTAATTTACTTGTCGTG 59.938 44.000 0.00 0.00 0.00 4.35
565 605 4.925054 TCCGTTCTAATTTACTTGTCGTGG 59.075 41.667 0.00 0.00 0.00 4.94
566 606 4.687483 CCGTTCTAATTTACTTGTCGTGGT 59.313 41.667 0.00 0.00 0.00 4.16
567 607 5.178067 CCGTTCTAATTTACTTGTCGTGGTT 59.822 40.000 0.00 0.00 0.00 3.67
568 608 6.293027 CCGTTCTAATTTACTTGTCGTGGTTT 60.293 38.462 0.00 0.00 0.00 3.27
569 609 7.127686 CGTTCTAATTTACTTGTCGTGGTTTT 58.872 34.615 0.00 0.00 0.00 2.43
570 610 7.111041 CGTTCTAATTTACTTGTCGTGGTTTTG 59.889 37.037 0.00 0.00 0.00 2.44
571 611 6.961576 TCTAATTTACTTGTCGTGGTTTTGG 58.038 36.000 0.00 0.00 0.00 3.28
572 612 5.585820 AATTTACTTGTCGTGGTTTTGGT 57.414 34.783 0.00 0.00 0.00 3.67
573 613 5.585820 ATTTACTTGTCGTGGTTTTGGTT 57.414 34.783 0.00 0.00 0.00 3.67
574 614 5.388408 TTTACTTGTCGTGGTTTTGGTTT 57.612 34.783 0.00 0.00 0.00 3.27
575 615 6.506500 TTTACTTGTCGTGGTTTTGGTTTA 57.493 33.333 0.00 0.00 0.00 2.01
576 616 6.506500 TTACTTGTCGTGGTTTTGGTTTAA 57.493 33.333 0.00 0.00 0.00 1.52
577 617 5.388408 ACTTGTCGTGGTTTTGGTTTAAA 57.612 34.783 0.00 0.00 0.00 1.52
578 618 5.968254 ACTTGTCGTGGTTTTGGTTTAAAT 58.032 33.333 0.00 0.00 0.00 1.40
579 619 6.399743 ACTTGTCGTGGTTTTGGTTTAAATT 58.600 32.000 0.00 0.00 0.00 1.82
580 620 6.874664 ACTTGTCGTGGTTTTGGTTTAAATTT 59.125 30.769 0.00 0.00 0.00 1.82
581 621 8.033626 ACTTGTCGTGGTTTTGGTTTAAATTTA 58.966 29.630 0.00 0.00 0.00 1.40
582 622 8.767478 TTGTCGTGGTTTTGGTTTAAATTTAA 57.233 26.923 6.54 6.54 0.00 1.52
583 623 8.767478 TGTCGTGGTTTTGGTTTAAATTTAAA 57.233 26.923 17.45 17.45 0.00 1.52
747 1646 1.406614 GCTCATCCTGTCCTGTTCCTG 60.407 57.143 0.00 0.00 0.00 3.86
762 1661 1.227497 CCTGCTGCAGGTAGCTAGC 60.227 63.158 35.03 15.19 45.82 3.42
763 1662 1.684386 CCTGCTGCAGGTAGCTAGCT 61.684 60.000 35.03 23.12 45.82 3.32
764 1663 1.035923 CTGCTGCAGGTAGCTAGCTA 58.964 55.000 24.28 20.67 45.94 3.32
765 1664 1.000385 CTGCTGCAGGTAGCTAGCTAG 60.000 57.143 24.78 19.36 45.94 3.42
984 1901 0.302890 CTCATCATTCGCGACCAAGC 59.697 55.000 9.15 0.00 0.00 4.01
1058 1975 4.379243 CCAGGAGCGCAAGGACGT 62.379 66.667 11.47 0.00 38.28 4.34
1165 2085 2.607750 ATGAGGTGGACAGCCGGT 60.608 61.111 1.90 0.00 36.79 5.28
1539 2459 2.434774 GTCTTCCAGGGCCGGTTT 59.565 61.111 1.90 0.00 0.00 3.27
2104 3037 2.791655 AGCTGCACCTTAGGGTTTAAC 58.208 47.619 2.32 0.00 44.73 2.01
2105 3038 2.375509 AGCTGCACCTTAGGGTTTAACT 59.624 45.455 2.32 0.00 44.73 2.24
2184 3119 6.349611 CGGGAAACTGAGAATTGAATGTCAAT 60.350 38.462 0.00 0.00 43.58 2.57
2241 3181 9.853177 ACAATAAGCTATAGCCCATTATTATCC 57.147 33.333 21.17 0.00 43.38 2.59
2339 3284 3.932710 CACAAGCGCCAAGATTAGTTCTA 59.067 43.478 2.29 0.00 33.05 2.10
2340 3285 4.033358 CACAAGCGCCAAGATTAGTTCTAG 59.967 45.833 2.29 0.00 33.05 2.43
2341 3286 4.184629 CAAGCGCCAAGATTAGTTCTAGT 58.815 43.478 2.29 0.00 33.05 2.57
2496 3442 1.598962 GAGCTTGCACTGCACCTCA 60.599 57.895 19.13 0.67 38.71 3.86
2576 3542 4.634004 CGTAGAGCCATTGATTTGTGGTTA 59.366 41.667 0.00 0.00 37.81 2.85
2607 3573 1.379176 GCCTTTCAGCCTTCTCCCC 60.379 63.158 0.00 0.00 0.00 4.81
2610 3576 1.409381 CCTTTCAGCCTTCTCCCCATC 60.409 57.143 0.00 0.00 0.00 3.51
2630 3596 2.875933 TCAGCCGTGTTTCCTACTTTTG 59.124 45.455 0.00 0.00 0.00 2.44
2638 3604 6.154445 CGTGTTTCCTACTTTTGCTCTACTA 58.846 40.000 0.00 0.00 0.00 1.82
2663 3629 7.679783 ATACTCCAGTATATATGCACTTGCAA 58.320 34.615 8.21 0.00 45.51 4.08
2664 3630 8.156820 ATACTCCAGTATATATGCACTTGCAAA 58.843 33.333 8.21 0.00 45.51 3.68
2758 3725 8.186163 TCGTGATCGTATGTAGTAGAAATTTGT 58.814 33.333 0.00 0.00 38.33 2.83
2819 3786 6.612306 GGTGATTAACCTTTGAGTTGATGTC 58.388 40.000 0.00 0.00 46.55 3.06
2830 3797 9.035607 CCTTTGAGTTGATGTCAGTGTATATAC 57.964 37.037 5.89 5.89 0.00 1.47
2879 3846 4.397103 TGACAGCATTGATTTTAGAGCCAG 59.603 41.667 0.00 0.00 0.00 4.85
2893 3860 1.734465 GAGCCAGCATTCACTGTGTAC 59.266 52.381 7.79 0.00 35.83 2.90
2910 3877 5.005740 TGTGTACACACCGTTAGATCTACT 58.994 41.667 24.62 0.00 45.88 2.57
2913 3880 5.586243 TGTACACACCGTTAGATCTACTACC 59.414 44.000 0.67 0.00 0.00 3.18
2914 3881 4.853007 ACACACCGTTAGATCTACTACCT 58.147 43.478 0.67 0.00 0.00 3.08
2918 3885 3.072944 CCGTTAGATCTACTACCTCCCG 58.927 54.545 0.67 0.00 0.00 5.14
2936 3906 3.905968 CCCGGGTTTGGGTTTATTAGAT 58.094 45.455 14.18 0.00 44.76 1.98
2939 3909 4.340097 CCGGGTTTGGGTTTATTAGATTCC 59.660 45.833 0.00 0.00 0.00 3.01
2949 3919 9.777008 TGGGTTTATTAGATTCCCTTGTATTTT 57.223 29.630 0.00 0.00 38.95 1.82
2958 3928 8.349568 AGATTCCCTTGTATTTTGAGTTAACC 57.650 34.615 0.88 0.00 0.00 2.85
2959 3929 8.170730 AGATTCCCTTGTATTTTGAGTTAACCT 58.829 33.333 0.88 0.00 0.00 3.50
2960 3930 8.721133 ATTCCCTTGTATTTTGAGTTAACCTT 57.279 30.769 0.88 0.00 0.00 3.50
2961 3931 8.541899 TTCCCTTGTATTTTGAGTTAACCTTT 57.458 30.769 0.88 0.00 0.00 3.11
2962 3932 7.947282 TCCCTTGTATTTTGAGTTAACCTTTG 58.053 34.615 0.88 0.00 0.00 2.77
2963 3933 7.780745 TCCCTTGTATTTTGAGTTAACCTTTGA 59.219 33.333 0.88 0.00 0.00 2.69
2964 3934 7.865889 CCCTTGTATTTTGAGTTAACCTTTGAC 59.134 37.037 0.88 0.00 0.00 3.18
2965 3935 7.865889 CCTTGTATTTTGAGTTAACCTTTGACC 59.134 37.037 0.88 0.00 0.00 4.02
2966 3936 6.961576 TGTATTTTGAGTTAACCTTTGACCG 58.038 36.000 0.88 0.00 0.00 4.79
2967 3937 6.543100 TGTATTTTGAGTTAACCTTTGACCGT 59.457 34.615 0.88 0.00 0.00 4.83
2968 3938 7.714377 TGTATTTTGAGTTAACCTTTGACCGTA 59.286 33.333 0.88 0.00 0.00 4.02
2969 3939 6.607735 TTTTGAGTTAACCTTTGACCGTAG 57.392 37.500 0.88 0.00 0.00 3.51
2999 3969 9.183368 TGATTTGCAAATATAAGTGGTATGTCA 57.817 29.630 24.15 10.92 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.361737 GCAGGAGGGCCTTTGGTC 60.362 66.667 7.89 0.00 43.90 4.02
42 43 3.866582 CGGGACAGATGGGCCTCC 61.867 72.222 4.53 2.00 0.00 4.30
43 44 3.866582 CCGGGACAGATGGGCCTC 61.867 72.222 4.53 0.00 0.00 4.70
44 45 4.741239 ACCGGGACAGATGGGCCT 62.741 66.667 6.32 0.00 0.00 5.19
45 46 3.699134 GAACCGGGACAGATGGGCC 62.699 68.421 6.32 0.00 0.00 5.80
46 47 2.124695 GAACCGGGACAGATGGGC 60.125 66.667 6.32 0.00 0.00 5.36
47 48 2.186903 CGAACCGGGACAGATGGG 59.813 66.667 6.32 0.00 0.00 4.00
48 49 1.447838 CACGAACCGGGACAGATGG 60.448 63.158 6.32 0.00 28.17 3.51
49 50 0.528924 TACACGAACCGGGACAGATG 59.471 55.000 6.32 0.00 32.98 2.90
50 51 1.203994 CTTACACGAACCGGGACAGAT 59.796 52.381 6.32 0.00 32.98 2.90
51 52 0.599558 CTTACACGAACCGGGACAGA 59.400 55.000 6.32 0.00 32.98 3.41
52 53 0.599558 TCTTACACGAACCGGGACAG 59.400 55.000 6.32 0.00 32.98 3.51
53 54 1.039068 TTCTTACACGAACCGGGACA 58.961 50.000 6.32 0.00 32.98 4.02
54 55 1.422388 GTTCTTACACGAACCGGGAC 58.578 55.000 6.32 0.00 37.82 4.46
55 56 3.892200 GTTCTTACACGAACCGGGA 57.108 52.632 6.32 0.00 37.82 5.14
60 61 1.000171 AGTCCCGGTTCTTACACGAAC 60.000 52.381 0.00 0.00 41.91 3.95
61 62 1.331214 AGTCCCGGTTCTTACACGAA 58.669 50.000 0.00 0.00 0.00 3.85
62 63 2.198827 TAGTCCCGGTTCTTACACGA 57.801 50.000 0.00 0.00 0.00 4.35
63 64 3.248266 CTTTAGTCCCGGTTCTTACACG 58.752 50.000 0.00 0.00 0.00 4.49
64 65 3.593096 CCTTTAGTCCCGGTTCTTACAC 58.407 50.000 0.00 0.00 0.00 2.90
65 66 2.568509 CCCTTTAGTCCCGGTTCTTACA 59.431 50.000 0.00 0.00 0.00 2.41
66 67 2.679059 GCCCTTTAGTCCCGGTTCTTAC 60.679 54.545 0.00 0.00 0.00 2.34
67 68 1.556451 GCCCTTTAGTCCCGGTTCTTA 59.444 52.381 0.00 0.00 0.00 2.10
68 69 0.327259 GCCCTTTAGTCCCGGTTCTT 59.673 55.000 0.00 0.00 0.00 2.52
69 70 0.546988 AGCCCTTTAGTCCCGGTTCT 60.547 55.000 0.00 0.15 0.00 3.01
70 71 1.138464 CTAGCCCTTTAGTCCCGGTTC 59.862 57.143 0.00 0.00 0.00 3.62
71 72 1.201424 CTAGCCCTTTAGTCCCGGTT 58.799 55.000 0.00 0.00 0.00 4.44
72 73 0.337428 TCTAGCCCTTTAGTCCCGGT 59.663 55.000 0.00 0.00 0.00 5.28
73 74 1.041437 CTCTAGCCCTTTAGTCCCGG 58.959 60.000 0.00 0.00 0.00 5.73
74 75 0.389757 GCTCTAGCCCTTTAGTCCCG 59.610 60.000 0.00 0.00 34.31 5.14
75 76 1.497161 TGCTCTAGCCCTTTAGTCCC 58.503 55.000 0.00 0.00 41.18 4.46
76 77 3.847671 AATGCTCTAGCCCTTTAGTCC 57.152 47.619 0.00 0.00 41.18 3.85
77 78 5.538849 ACTAATGCTCTAGCCCTTTAGTC 57.461 43.478 12.55 0.00 36.44 2.59
78 79 6.461231 CGTTACTAATGCTCTAGCCCTTTAGT 60.461 42.308 18.16 18.16 40.27 2.24
79 80 5.921408 CGTTACTAATGCTCTAGCCCTTTAG 59.079 44.000 0.00 7.08 41.18 1.85
80 81 5.595542 TCGTTACTAATGCTCTAGCCCTTTA 59.404 40.000 0.00 0.00 41.18 1.85
81 82 4.404715 TCGTTACTAATGCTCTAGCCCTTT 59.595 41.667 0.00 0.00 41.18 3.11
82 83 3.958798 TCGTTACTAATGCTCTAGCCCTT 59.041 43.478 0.00 0.00 41.18 3.95
83 84 3.318557 GTCGTTACTAATGCTCTAGCCCT 59.681 47.826 0.00 0.00 41.18 5.19
84 85 3.552478 GGTCGTTACTAATGCTCTAGCCC 60.552 52.174 0.00 0.00 41.18 5.19
85 86 3.552478 GGGTCGTTACTAATGCTCTAGCC 60.552 52.174 0.00 0.00 41.18 3.93
86 87 3.318557 AGGGTCGTTACTAATGCTCTAGC 59.681 47.826 0.00 0.00 42.50 3.42
87 88 5.517322 AAGGGTCGTTACTAATGCTCTAG 57.483 43.478 0.00 0.00 0.00 2.43
88 89 5.927281 AAAGGGTCGTTACTAATGCTCTA 57.073 39.130 0.00 0.00 0.00 2.43
89 90 4.820894 AAAGGGTCGTTACTAATGCTCT 57.179 40.909 0.00 0.00 0.00 4.09
90 91 5.658468 ACTAAAGGGTCGTTACTAATGCTC 58.342 41.667 0.00 0.00 0.00 4.26
91 92 5.394993 GGACTAAAGGGTCGTTACTAATGCT 60.395 44.000 0.00 0.00 37.12 3.79
92 93 4.807834 GGACTAAAGGGTCGTTACTAATGC 59.192 45.833 0.00 0.00 37.12 3.56
93 94 5.354767 GGGACTAAAGGGTCGTTACTAATG 58.645 45.833 0.00 0.00 37.12 1.90
94 95 4.098501 CGGGACTAAAGGGTCGTTACTAAT 59.901 45.833 0.00 0.00 37.12 1.73
95 96 3.443681 CGGGACTAAAGGGTCGTTACTAA 59.556 47.826 0.00 0.00 37.12 2.24
96 97 3.016736 CGGGACTAAAGGGTCGTTACTA 58.983 50.000 0.00 0.00 37.12 1.82
97 98 1.821136 CGGGACTAAAGGGTCGTTACT 59.179 52.381 0.00 0.00 37.12 2.24
98 99 1.134995 CCGGGACTAAAGGGTCGTTAC 60.135 57.143 0.00 0.00 37.12 2.50
99 100 1.185315 CCGGGACTAAAGGGTCGTTA 58.815 55.000 0.00 0.00 37.12 3.18
100 101 0.833409 ACCGGGACTAAAGGGTCGTT 60.833 55.000 6.32 0.00 37.12 3.85
101 102 0.833409 AACCGGGACTAAAGGGTCGT 60.833 55.000 6.32 0.00 37.12 4.34
102 103 0.108472 GAACCGGGACTAAAGGGTCG 60.108 60.000 6.32 0.00 37.12 4.79
103 104 0.978907 TGAACCGGGACTAAAGGGTC 59.021 55.000 6.32 0.00 41.92 4.46
104 105 1.437397 TTGAACCGGGACTAAAGGGT 58.563 50.000 6.32 0.00 0.00 4.34
105 106 2.572209 TTTGAACCGGGACTAAAGGG 57.428 50.000 6.32 0.00 0.00 3.95
106 107 3.005050 GGTTTTTGAACCGGGACTAAAGG 59.995 47.826 6.32 0.00 32.47 3.11
107 108 4.233123 GGTTTTTGAACCGGGACTAAAG 57.767 45.455 6.32 0.00 32.47 1.85
117 118 2.963548 TTTGTCCCGGTTTTTGAACC 57.036 45.000 0.00 0.00 39.44 3.62
118 119 3.191669 CCTTTTGTCCCGGTTTTTGAAC 58.808 45.455 0.00 0.00 0.00 3.18
119 120 2.418884 GCCTTTTGTCCCGGTTTTTGAA 60.419 45.455 0.00 0.00 0.00 2.69
120 121 1.137282 GCCTTTTGTCCCGGTTTTTGA 59.863 47.619 0.00 0.00 0.00 2.69
121 122 1.577468 GCCTTTTGTCCCGGTTTTTG 58.423 50.000 0.00 0.00 0.00 2.44
122 123 0.466543 GGCCTTTTGTCCCGGTTTTT 59.533 50.000 0.00 0.00 0.00 1.94
123 124 1.404479 GGGCCTTTTGTCCCGGTTTT 61.404 55.000 0.84 0.00 32.00 2.43
124 125 1.835267 GGGCCTTTTGTCCCGGTTT 60.835 57.895 0.84 0.00 32.00 3.27
125 126 2.203582 GGGCCTTTTGTCCCGGTT 60.204 61.111 0.84 0.00 32.00 4.44
129 130 0.113580 TGGTAAGGGCCTTTTGTCCC 59.886 55.000 26.29 16.23 42.94 4.46
130 131 1.616865 GTTGGTAAGGGCCTTTTGTCC 59.383 52.381 26.29 20.31 0.00 4.02
131 132 1.616865 GGTTGGTAAGGGCCTTTTGTC 59.383 52.381 26.29 12.32 0.00 3.18
132 133 1.712056 GGTTGGTAAGGGCCTTTTGT 58.288 50.000 26.29 1.50 0.00 2.83
133 134 0.601057 CGGTTGGTAAGGGCCTTTTG 59.399 55.000 26.29 3.03 0.00 2.44
134 135 0.541063 CCGGTTGGTAAGGGCCTTTT 60.541 55.000 26.29 2.86 0.00 2.27
135 136 1.076014 CCGGTTGGTAAGGGCCTTT 59.924 57.895 26.29 5.08 0.00 3.11
136 137 2.761160 CCGGTTGGTAAGGGCCTT 59.239 61.111 24.44 24.44 0.00 4.35
137 138 3.335729 CCCGGTTGGTAAGGGCCT 61.336 66.667 0.00 0.00 38.51 5.19
138 139 3.332385 TCCCGGTTGGTAAGGGCC 61.332 66.667 0.00 0.00 44.70 5.80
139 140 2.045634 GTCCCGGTTGGTAAGGGC 60.046 66.667 0.00 0.00 44.70 5.19
140 141 1.196104 TCTGTCCCGGTTGGTAAGGG 61.196 60.000 0.00 0.00 46.40 3.95
141 142 0.909623 ATCTGTCCCGGTTGGTAAGG 59.090 55.000 0.00 0.00 34.77 2.69
142 143 1.553248 TCATCTGTCCCGGTTGGTAAG 59.447 52.381 0.00 0.00 34.77 2.34
143 144 1.276989 GTCATCTGTCCCGGTTGGTAA 59.723 52.381 0.00 0.00 34.77 2.85
144 145 0.899720 GTCATCTGTCCCGGTTGGTA 59.100 55.000 0.00 0.00 34.77 3.25
145 146 1.677552 GTCATCTGTCCCGGTTGGT 59.322 57.895 0.00 0.00 34.77 3.67
146 147 1.078426 GGTCATCTGTCCCGGTTGG 60.078 63.158 0.00 0.00 0.00 3.77
147 148 1.078426 GGGTCATCTGTCCCGGTTG 60.078 63.158 0.00 0.00 33.91 3.77
148 149 0.840722 AAGGGTCATCTGTCCCGGTT 60.841 55.000 0.00 0.00 46.13 4.44
149 150 0.840722 AAAGGGTCATCTGTCCCGGT 60.841 55.000 0.00 0.00 46.13 5.28
150 151 0.328258 AAAAGGGTCATCTGTCCCGG 59.672 55.000 6.82 0.00 46.13 5.73
151 152 2.084546 GAAAAAGGGTCATCTGTCCCG 58.915 52.381 6.82 0.00 46.13 5.14
152 153 3.441500 AGAAAAAGGGTCATCTGTCCC 57.558 47.619 4.52 4.52 42.66 4.46
153 154 5.167303 AGTAGAAAAAGGGTCATCTGTCC 57.833 43.478 0.00 0.00 0.00 4.02
154 155 6.814146 CACTAGTAGAAAAAGGGTCATCTGTC 59.186 42.308 3.59 0.00 0.00 3.51
155 156 6.497259 TCACTAGTAGAAAAAGGGTCATCTGT 59.503 38.462 3.59 0.00 0.00 3.41
156 157 6.936279 TCACTAGTAGAAAAAGGGTCATCTG 58.064 40.000 3.59 0.00 0.00 2.90
157 158 7.741554 ATCACTAGTAGAAAAAGGGTCATCT 57.258 36.000 3.59 0.00 0.00 2.90
158 159 7.654116 GCTATCACTAGTAGAAAAAGGGTCATC 59.346 40.741 3.59 0.00 0.00 2.92
159 160 7.345914 AGCTATCACTAGTAGAAAAAGGGTCAT 59.654 37.037 3.59 0.00 0.00 3.06
160 161 6.668283 AGCTATCACTAGTAGAAAAAGGGTCA 59.332 38.462 3.59 0.00 0.00 4.02
161 162 7.114866 AGCTATCACTAGTAGAAAAAGGGTC 57.885 40.000 3.59 0.00 0.00 4.46
162 163 7.201929 GCTAGCTATCACTAGTAGAAAAAGGGT 60.202 40.741 7.70 0.00 41.49 4.34
163 164 7.149307 GCTAGCTATCACTAGTAGAAAAAGGG 58.851 42.308 7.70 0.00 41.49 3.95
164 165 7.650104 GTGCTAGCTATCACTAGTAGAAAAAGG 59.350 40.741 18.29 0.00 41.49 3.11
165 166 7.650104 GGTGCTAGCTATCACTAGTAGAAAAAG 59.350 40.741 23.09 0.00 41.49 2.27
166 167 7.342284 AGGTGCTAGCTATCACTAGTAGAAAAA 59.658 37.037 23.09 0.00 41.49 1.94
167 168 6.834451 AGGTGCTAGCTATCACTAGTAGAAAA 59.166 38.462 23.09 0.00 41.49 2.29
168 169 6.263392 CAGGTGCTAGCTATCACTAGTAGAAA 59.737 42.308 23.09 0.00 41.49 2.52
169 170 5.765677 CAGGTGCTAGCTATCACTAGTAGAA 59.234 44.000 23.09 0.00 41.49 2.10
170 171 5.071923 TCAGGTGCTAGCTATCACTAGTAGA 59.928 44.000 23.09 13.03 41.49 2.59
171 172 5.309638 TCAGGTGCTAGCTATCACTAGTAG 58.690 45.833 23.09 11.38 41.49 2.57
172 173 5.306114 TCAGGTGCTAGCTATCACTAGTA 57.694 43.478 23.09 7.74 41.49 1.82
173 174 4.171878 TCAGGTGCTAGCTATCACTAGT 57.828 45.455 23.09 9.10 41.49 2.57
174 175 5.720371 AATCAGGTGCTAGCTATCACTAG 57.280 43.478 23.09 16.70 42.20 2.57
175 176 5.011125 GGAAATCAGGTGCTAGCTATCACTA 59.989 44.000 23.09 12.17 33.91 2.74
176 177 4.202305 GGAAATCAGGTGCTAGCTATCACT 60.202 45.833 23.09 9.84 33.91 3.41
177 178 4.061596 GGAAATCAGGTGCTAGCTATCAC 58.938 47.826 17.52 17.52 0.00 3.06
178 179 3.711190 TGGAAATCAGGTGCTAGCTATCA 59.289 43.478 17.23 0.00 0.00 2.15
179 180 4.342862 TGGAAATCAGGTGCTAGCTATC 57.657 45.455 17.23 6.44 0.00 2.08
180 181 4.103785 ACATGGAAATCAGGTGCTAGCTAT 59.896 41.667 17.23 0.00 39.11 2.97
181 182 3.455910 ACATGGAAATCAGGTGCTAGCTA 59.544 43.478 17.23 0.00 39.11 3.32
182 183 2.240667 ACATGGAAATCAGGTGCTAGCT 59.759 45.455 17.23 0.00 39.11 3.32
183 184 2.615912 GACATGGAAATCAGGTGCTAGC 59.384 50.000 8.10 8.10 40.82 3.42
184 185 3.875727 CAGACATGGAAATCAGGTGCTAG 59.124 47.826 0.00 0.00 40.82 3.42
185 186 3.519107 TCAGACATGGAAATCAGGTGCTA 59.481 43.478 0.00 0.00 40.82 3.49
186 187 2.306805 TCAGACATGGAAATCAGGTGCT 59.693 45.455 0.00 0.00 40.82 4.40
289 290 3.044156 TGAGAAGAGCAAGGCCAGATAT 58.956 45.455 5.01 0.00 0.00 1.63
290 291 2.433604 CTGAGAAGAGCAAGGCCAGATA 59.566 50.000 5.01 0.00 0.00 1.98
291 292 1.209990 CTGAGAAGAGCAAGGCCAGAT 59.790 52.381 5.01 0.00 0.00 2.90
293 294 0.392729 CCTGAGAAGAGCAAGGCCAG 60.393 60.000 5.01 0.00 0.00 4.85
310 311 1.918253 CCAATCCACTGCCTAGCCT 59.082 57.895 0.00 0.00 0.00 4.58
325 326 2.159170 CCCTTCTTTTTGAACGTGCCAA 60.159 45.455 0.00 0.00 0.00 4.52
326 327 1.407258 CCCTTCTTTTTGAACGTGCCA 59.593 47.619 0.00 0.00 0.00 4.92
329 330 1.407258 TGGCCCTTCTTTTTGAACGTG 59.593 47.619 0.00 0.00 0.00 4.49
332 333 7.093945 TGTCTATTATGGCCCTTCTTTTTGAAC 60.094 37.037 0.00 0.00 0.00 3.18
334 335 6.377146 GTGTCTATTATGGCCCTTCTTTTTGA 59.623 38.462 0.00 0.00 0.00 2.69
335 336 6.564328 GTGTCTATTATGGCCCTTCTTTTTG 58.436 40.000 0.00 0.00 0.00 2.44
341 342 3.131396 CACGTGTCTATTATGGCCCTTC 58.869 50.000 7.58 0.00 0.00 3.46
343 344 2.102588 GTCACGTGTCTATTATGGCCCT 59.897 50.000 16.51 0.00 0.00 5.19
344 345 2.159014 TGTCACGTGTCTATTATGGCCC 60.159 50.000 16.51 0.00 0.00 5.80
345 346 2.864343 GTGTCACGTGTCTATTATGGCC 59.136 50.000 16.51 0.00 0.00 5.36
346 347 2.534349 CGTGTCACGTGTCTATTATGGC 59.466 50.000 17.30 0.00 36.74 4.40
347 348 4.023739 TCGTGTCACGTGTCTATTATGG 57.976 45.455 23.82 0.00 43.14 2.74
348 349 7.853377 ATATTCGTGTCACGTGTCTATTATG 57.147 36.000 23.82 0.00 43.14 1.90
349 350 7.743400 CGTATATTCGTGTCACGTGTCTATTAT 59.257 37.037 23.82 12.50 43.14 1.28
350 351 7.065283 CGTATATTCGTGTCACGTGTCTATTA 58.935 38.462 23.82 6.66 43.14 0.98
351 352 5.905733 CGTATATTCGTGTCACGTGTCTATT 59.094 40.000 23.82 4.74 43.14 1.73
353 354 4.260334 CCGTATATTCGTGTCACGTGTCTA 60.260 45.833 23.82 11.93 43.14 2.59
354 355 3.486375 CCGTATATTCGTGTCACGTGTCT 60.486 47.826 23.82 10.92 43.14 3.41
355 356 2.780014 CCGTATATTCGTGTCACGTGTC 59.220 50.000 23.82 10.98 43.14 3.67
356 357 2.789208 CCGTATATTCGTGTCACGTGT 58.211 47.619 23.82 15.85 43.14 4.49
357 358 1.515631 GCCGTATATTCGTGTCACGTG 59.484 52.381 23.82 9.94 43.14 4.49
358 359 1.132834 TGCCGTATATTCGTGTCACGT 59.867 47.619 23.82 9.35 43.14 4.49
359 360 1.830086 TGCCGTATATTCGTGTCACG 58.170 50.000 19.38 19.38 44.19 4.35
360 361 3.184541 AGTTGCCGTATATTCGTGTCAC 58.815 45.455 0.95 0.00 0.00 3.67
361 362 3.441163 GAGTTGCCGTATATTCGTGTCA 58.559 45.455 0.95 0.00 0.00 3.58
362 363 2.793232 GGAGTTGCCGTATATTCGTGTC 59.207 50.000 0.95 0.00 0.00 3.67
363 364 2.817901 GGAGTTGCCGTATATTCGTGT 58.182 47.619 0.95 0.00 0.00 4.49
375 376 3.325201 ATCCCCGTTCGGAGTTGCC 62.325 63.158 13.08 0.00 34.69 4.52
376 377 2.106683 CATCCCCGTTCGGAGTTGC 61.107 63.158 13.08 0.00 34.69 4.17
383 384 1.196808 CAAAGTTGTCATCCCCGTTCG 59.803 52.381 0.00 0.00 0.00 3.95
389 390 5.462068 GCTTTACAAACAAAGTTGTCATCCC 59.538 40.000 0.00 0.00 40.85 3.85
395 422 8.764524 TTGTTATGCTTTACAAACAAAGTTGT 57.235 26.923 2.08 0.00 43.95 3.32
423 450 8.989653 AAAACTAAAACTTGTCATCGGAAAAA 57.010 26.923 0.00 0.00 0.00 1.94
491 531 3.599704 GGAGCATTCCGGGCATGC 61.600 66.667 21.84 21.84 46.39 4.06
507 547 1.080366 TGTAACGCGTGTGCTAGGG 60.080 57.895 14.98 0.00 39.65 3.53
509 549 1.415374 AAGTGTAACGCGTGTGCTAG 58.585 50.000 14.98 0.00 45.86 3.42
511 551 1.990563 GATAAGTGTAACGCGTGTGCT 59.009 47.619 14.98 6.26 45.86 4.40
512 552 1.722464 TGATAAGTGTAACGCGTGTGC 59.278 47.619 14.98 6.78 45.86 4.57
513 553 4.577687 AATGATAAGTGTAACGCGTGTG 57.422 40.909 14.98 0.00 45.86 3.82
515 555 6.327177 AGTAAATGATAAGTGTAACGCGTG 57.673 37.500 14.98 0.00 45.86 5.34
516 556 5.517770 GGAGTAAATGATAAGTGTAACGCGT 59.482 40.000 5.58 5.58 45.86 6.01
517 557 5.051240 GGGAGTAAATGATAAGTGTAACGCG 60.051 44.000 3.53 3.53 45.86 6.01
518 558 6.047231 AGGGAGTAAATGATAAGTGTAACGC 58.953 40.000 0.00 0.00 45.86 4.84
519 559 6.700520 GGAGGGAGTAAATGATAAGTGTAACG 59.299 42.308 0.00 0.00 45.86 3.18
520 560 6.700520 CGGAGGGAGTAAATGATAAGTGTAAC 59.299 42.308 0.00 0.00 0.00 2.50
521 561 6.381994 ACGGAGGGAGTAAATGATAAGTGTAA 59.618 38.462 0.00 0.00 0.00 2.41
522 562 5.895534 ACGGAGGGAGTAAATGATAAGTGTA 59.104 40.000 0.00 0.00 0.00 2.90
526 566 6.163135 AGAACGGAGGGAGTAAATGATAAG 57.837 41.667 0.00 0.00 0.00 1.73
531 571 7.985752 AGTAAATTAGAACGGAGGGAGTAAATG 59.014 37.037 0.00 0.00 0.00 2.32
537 577 5.731591 ACAAGTAAATTAGAACGGAGGGAG 58.268 41.667 0.00 0.00 0.00 4.30
538 578 5.622914 CGACAAGTAAATTAGAACGGAGGGA 60.623 44.000 0.00 0.00 0.00 4.20
539 579 4.565564 CGACAAGTAAATTAGAACGGAGGG 59.434 45.833 0.00 0.00 0.00 4.30
540 580 5.061808 CACGACAAGTAAATTAGAACGGAGG 59.938 44.000 0.00 0.00 0.00 4.30
541 581 5.061808 CCACGACAAGTAAATTAGAACGGAG 59.938 44.000 0.00 0.00 0.00 4.63
542 582 4.925054 CCACGACAAGTAAATTAGAACGGA 59.075 41.667 0.00 0.00 0.00 4.69
543 583 4.687483 ACCACGACAAGTAAATTAGAACGG 59.313 41.667 0.00 0.00 0.00 4.44
544 584 5.834239 ACCACGACAAGTAAATTAGAACG 57.166 39.130 0.00 0.00 0.00 3.95
545 585 7.377662 CCAAAACCACGACAAGTAAATTAGAAC 59.622 37.037 0.00 0.00 0.00 3.01
546 586 7.067251 ACCAAAACCACGACAAGTAAATTAGAA 59.933 33.333 0.00 0.00 0.00 2.10
548 588 6.731164 ACCAAAACCACGACAAGTAAATTAG 58.269 36.000 0.00 0.00 0.00 1.73
549 589 6.696441 ACCAAAACCACGACAAGTAAATTA 57.304 33.333 0.00 0.00 0.00 1.40
550 590 5.585820 ACCAAAACCACGACAAGTAAATT 57.414 34.783 0.00 0.00 0.00 1.82
551 591 5.585820 AACCAAAACCACGACAAGTAAAT 57.414 34.783 0.00 0.00 0.00 1.40
552 592 5.388408 AAACCAAAACCACGACAAGTAAA 57.612 34.783 0.00 0.00 0.00 2.01
553 593 6.506500 TTAAACCAAAACCACGACAAGTAA 57.493 33.333 0.00 0.00 0.00 2.24
554 594 6.506500 TTTAAACCAAAACCACGACAAGTA 57.493 33.333 0.00 0.00 0.00 2.24
555 595 5.388408 TTTAAACCAAAACCACGACAAGT 57.612 34.783 0.00 0.00 0.00 3.16
556 596 6.895607 AATTTAAACCAAAACCACGACAAG 57.104 33.333 0.00 0.00 0.00 3.16
557 597 8.767478 TTAAATTTAAACCAAAACCACGACAA 57.233 26.923 8.20 0.00 0.00 3.18
558 598 8.654215 GTTTAAATTTAAACCAAAACCACGACA 58.346 29.630 30.80 3.81 44.07 4.35
592 632 1.753073 TCCCTCCGTTCCGATTTACTC 59.247 52.381 0.00 0.00 0.00 2.59
593 633 1.755380 CTCCCTCCGTTCCGATTTACT 59.245 52.381 0.00 0.00 0.00 2.24
594 634 1.479730 ACTCCCTCCGTTCCGATTTAC 59.520 52.381 0.00 0.00 0.00 2.01
595 635 1.856629 ACTCCCTCCGTTCCGATTTA 58.143 50.000 0.00 0.00 0.00 1.40
596 636 1.856629 TACTCCCTCCGTTCCGATTT 58.143 50.000 0.00 0.00 0.00 2.17
597 637 1.856629 TTACTCCCTCCGTTCCGATT 58.143 50.000 0.00 0.00 0.00 3.34
598 638 1.856629 TTTACTCCCTCCGTTCCGAT 58.143 50.000 0.00 0.00 0.00 4.18
599 639 1.631405 TTTTACTCCCTCCGTTCCGA 58.369 50.000 0.00 0.00 0.00 4.55
600 640 2.460757 TTTTTACTCCCTCCGTTCCG 57.539 50.000 0.00 0.00 0.00 4.30
625 665 0.834612 TCTTTTCCACACCGGTGTCT 59.165 50.000 36.92 15.25 42.83 3.41
747 1646 0.319469 GCTAGCTAGCTACCTGCAGC 60.319 60.000 33.71 18.52 45.62 5.25
767 1666 3.628646 AAAGGTAGCAGGCGGGCTG 62.629 63.158 25.61 25.61 45.44 4.85
769 1668 2.893682 ATCAAAGGTAGCAGGCGGGC 62.894 60.000 0.00 0.00 0.00 6.13
770 1669 0.815615 GATCAAAGGTAGCAGGCGGG 60.816 60.000 0.00 0.00 0.00 6.13
771 1670 0.179000 AGATCAAAGGTAGCAGGCGG 59.821 55.000 0.00 0.00 0.00 6.13
772 1671 1.137872 AGAGATCAAAGGTAGCAGGCG 59.862 52.381 0.00 0.00 0.00 5.52
984 1901 1.066908 GACATGGAGAGAGGAAGCTCG 59.933 57.143 0.00 0.00 39.87 5.03
1165 2085 0.681887 TCCTTCATCTCGGCGGTACA 60.682 55.000 7.21 0.00 0.00 2.90
1887 2816 3.365265 CAAGGTTCCACCGGCTGC 61.365 66.667 0.00 0.00 44.90 5.25
2104 3037 3.749226 AGAAGCCCAAGAAAACAGAGAG 58.251 45.455 0.00 0.00 0.00 3.20
2105 3038 3.864789 AGAAGCCCAAGAAAACAGAGA 57.135 42.857 0.00 0.00 0.00 3.10
2184 3119 1.024271 AGCTTGCAAGAAAACGCAGA 58.976 45.000 30.39 0.00 39.75 4.26
2241 3181 2.154462 AGGTTGAGATTGCCAAAGACG 58.846 47.619 0.00 0.00 0.00 4.18
2339 3284 0.688087 GGGGCTAGCTGGTGAGTACT 60.688 60.000 15.72 0.00 0.00 2.73
2340 3285 0.976073 TGGGGCTAGCTGGTGAGTAC 60.976 60.000 15.72 0.00 0.00 2.73
2341 3286 0.252513 TTGGGGCTAGCTGGTGAGTA 60.253 55.000 15.72 0.00 0.00 2.59
2402 3348 2.593026 ACCACAAAAGGGTATGGTGTG 58.407 47.619 0.00 0.00 43.88 3.82
2496 3442 5.272402 CTCCCCCATTATGTTTTCTTTCCT 58.728 41.667 0.00 0.00 0.00 3.36
2497 3443 4.405680 CCTCCCCCATTATGTTTTCTTTCC 59.594 45.833 0.00 0.00 0.00 3.13
2498 3444 5.023452 ACCTCCCCCATTATGTTTTCTTTC 58.977 41.667 0.00 0.00 0.00 2.62
2502 3468 2.430694 GCACCTCCCCCATTATGTTTTC 59.569 50.000 0.00 0.00 0.00 2.29
2506 3472 0.552848 CTGCACCTCCCCCATTATGT 59.447 55.000 0.00 0.00 0.00 2.29
2549 3515 3.689649 ACAAATCAATGGCTCTACGGAAC 59.310 43.478 0.00 0.00 0.00 3.62
2576 3542 2.368875 CTGAAAGGCCCATACGGTAGAT 59.631 50.000 0.00 0.00 0.00 1.98
2607 3573 2.386661 AGTAGGAAACACGGCTGATG 57.613 50.000 0.00 0.00 0.00 3.07
2610 3576 2.604614 GCAAAAGTAGGAAACACGGCTG 60.605 50.000 0.00 0.00 0.00 4.85
2630 3596 9.562408 TGCATATATACTGGAGTATAGTAGAGC 57.438 37.037 11.27 10.48 44.04 4.09
2669 3635 3.664107 TGTTCTGTTCGCTAGCATCTTT 58.336 40.909 16.45 0.00 0.00 2.52
2674 3640 2.610479 CCTTCTGTTCTGTTCGCTAGCA 60.610 50.000 16.45 0.00 0.00 3.49
2681 3647 0.514691 CGCAGCCTTCTGTTCTGTTC 59.485 55.000 0.00 0.00 42.29 3.18
2719 3686 0.037046 ATCACGACGGGGTAACAACC 60.037 55.000 0.00 0.00 39.74 3.77
2758 3725 2.771943 GTCCTGACCCACATCCATAGAA 59.228 50.000 0.00 0.00 0.00 2.10
2761 3728 2.568546 AGTCCTGACCCACATCCATA 57.431 50.000 0.00 0.00 0.00 2.74
2893 3860 4.275443 GGAGGTAGTAGATCTAACGGTGTG 59.725 50.000 3.40 0.00 40.94 3.82
2918 3885 5.525484 AGGGAATCTAATAAACCCAAACCC 58.475 41.667 0.00 0.00 42.62 4.11
2936 3906 8.417884 CAAAGGTTAACTCAAAATACAAGGGAA 58.582 33.333 5.42 0.00 0.00 3.97
2939 3909 7.865889 GGTCAAAGGTTAACTCAAAATACAAGG 59.134 37.037 5.42 0.00 0.00 3.61
2949 3919 3.642848 ACCTACGGTCAAAGGTTAACTCA 59.357 43.478 5.42 0.00 43.77 3.41
2950 3920 4.263018 ACCTACGGTCAAAGGTTAACTC 57.737 45.455 5.42 0.00 43.77 3.01
2957 3927 4.794169 CAAATCAAACCTACGGTCAAAGG 58.206 43.478 0.00 0.00 33.12 3.11
2958 3928 4.226761 GCAAATCAAACCTACGGTCAAAG 58.773 43.478 0.00 0.00 33.12 2.77
2959 3929 3.632604 TGCAAATCAAACCTACGGTCAAA 59.367 39.130 0.00 0.00 33.12 2.69
2960 3930 3.215151 TGCAAATCAAACCTACGGTCAA 58.785 40.909 0.00 0.00 33.12 3.18
2961 3931 2.852449 TGCAAATCAAACCTACGGTCA 58.148 42.857 0.00 0.00 33.12 4.02
2962 3932 3.907894 TTGCAAATCAAACCTACGGTC 57.092 42.857 0.00 0.00 33.12 4.79
2963 3933 4.864704 ATTTGCAAATCAAACCTACGGT 57.135 36.364 18.99 0.00 46.36 4.83
2964 3934 8.188139 ACTTATATTTGCAAATCAAACCTACGG 58.812 33.333 27.28 11.95 46.36 4.02
2965 3935 9.009327 CACTTATATTTGCAAATCAAACCTACG 57.991 33.333 27.28 12.53 46.36 3.51
2966 3936 9.301153 CCACTTATATTTGCAAATCAAACCTAC 57.699 33.333 27.28 0.00 46.36 3.18
2967 3937 9.030452 ACCACTTATATTTGCAAATCAAACCTA 57.970 29.630 27.28 9.37 46.36 3.08
2968 3938 7.906327 ACCACTTATATTTGCAAATCAAACCT 58.094 30.769 27.28 6.19 46.36 3.50
2969 3939 9.816354 ATACCACTTATATTTGCAAATCAAACC 57.184 29.630 27.28 0.00 46.36 3.27
2973 3943 9.183368 TGACATACCACTTATATTTGCAAATCA 57.817 29.630 27.28 14.25 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.