>input_sequence_63247
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----------------------------------------------------------------------------ATGT
CCTTTGGCAAGGCGGACATGAGCAAGGAGGGCATGTACCAGGAGCGCAAGGACGTGCCGGCCACACGGTTCGCGACGCCG
CCGCCGATGCGCCACCGCCATGCCGGCCACGGTGACCA---GCAGCAGCAGCTGGAGTGCTTCTCTGATGAGGTGGACAG
CCGGTGTACCGCCGAGATGAAGGAGCCTGGGGGCAGTGCGGCCGGCTCCCAGCTCGTTTCAGGCGGCGGCGTTGGCGACG
GGTCGAGCATCGAGGTGGCCAAGAAGCGGAGGGGGCGGCCGCCGGGGTCCAAGAACAAGCCGAAGCCGCCCGTGGTGATC
ACGCGGGAGGCGGAGCCCGCGGCGGCGATGCGGCCGCACGTGATCGAGATCCCCGGGGGCCGCGACGTCGCCGAGGCGCT
GGCGCGCTTCGCGAGCCGCCGCAACCTCGGGATCTGCGTGCTCGCCGGCACCGGCGCCGTCGGCAACGTCTCGCTCCGCC
ACCCCTGCCCCACGGCGCCCGGTGCTGCCCCGGCCGTCGTCGTCTTCCAGGGCCGGTTTGAGATCCTCTCCATCTCCGCC
ACCTTCCTGCCCCCGGCCATGGCCGCCGTGGCGCCCCAGGCCGCGGCCGTCGCTGCCGGGCTCTCCATCTCGCTCGCCGG
CCCGCACGGCCAGATCGTCGGCGGCGCAGTCGTGGGCCCGCTCTACGCCGCGACAACAATCGTCGTCGTCGCCGCCGCCT
TCACGAACCCCACCTTCCACCGCCTCCCCGCCGACGACGACGCGCCGATGCCCGTCTCCGTGTCGCTCTCCGGCAGCGGG
GACGCGGACGAACACCGCGCCCGTCAGCACCAGCCAGAGCCGCAAGAGCAGCGCCACCAACGGCGGCACG---------T
GACCCCGTCGGCAGCGCAGCCGGTGGAACCTTGCGGCGTGCCCGTCTACGCCTGCCACCCGCAGCCGCAAGAAGTGATGT
GGCCGCTTGCTGCTCGCGCGCCGCACCAACCGCCACC---GCCGCCGCCACCGTACTGA---------------------
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>chr5D_1_TraesCS5D01G252500
GACCAAAGGCCCTCCTGCCTGGGCTCGCTGCACCGGCCACGTGGAGGCCCATCTGTCCCGGTTCGTGTAAGAACCGGGAC
TAAAGGGCTAGAGCATTAGTAACGACCCTTTAGTCCCGGTTCAAAAACCGGGACAAAAGGCCCTTACCAACCGGGACAGA
TGACCCTTTTTCTACTAGTGATAGCTAGCACCTGATTTCCATGTCTGATTCATTTTCAGACGAAGGAGGAAGTATATCAA
CAAATTAGCCACCATTTTTTTCACTGCGAATTCAACTTGTGATAGTCTAATATCTGGCCTTGCTCTTCTCAGGCTAGGCA
GTGGATTGGCACGTTCAAAAAGAAGGGCCATAATAGACACGTGACACGAATATACGGCAACTCCGAACGG----------
----------------GGATGACAACTTTGTTTGTAAAGCATAACAATTTTTTTCCGATGACAAGTTTTAGTTTTTTGGA
----------TTTTTATTTCGGATGACAATTTTAG---TTGTAAAAAATGGCATGCCCGGAATGCTCCCTAGCACACGCG
TTACACTTATCATTTACTCCCTCCGTTCTAATTTACTTGTCGTGGTTTTGGTTTAAATTTAAACTAAAACCGAGTAAATC
GGAACGGAGGGAGTAAAAAAAAATAGACACCGGTGTGGAAAAGACAAAAGGATAAAAGGGAACACCCTCCCAGAG-----
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----------------------------------------CCC---------AGTCCATCTCGCCAACGGTGGCAGTGTG
GCACCGCCTCCGCTGCT-----CAGGCTCATCCTGTCCTGTTCCTGCTGCAGGTAGCTAGCTAGCCAGCCCGCC------
--TGCTACCTTTGATCTCTTCTCCGCGCCCACCACCCCCATATCACTTTCTTATCGACGACCGCTAGCTCCATCCCGTTC
CCAGCTCCAGACC--AGAACGCCCACGACTAGCGTCGCCAC--------TTGCCGCGCCCAACTTCCTCGTGACCCCTTG
CTCCCTCCAGCAGCCGCATCTTGCAAGCTTCTACTGCTACGCTCATCATTCGCGACCAAGCGAGCTTCCTCTCTCCATGT
CCTTTGGCAAGGCGGACATGAGCAAGGAGGGCATGTACCAGGAGCGCAAGGACGTGCCGGCCACACGGTTCGCGACGCCG
CCGCCGATGCGCCACCGCCATGCCGGCCACGGTGACCA---GCAGCAGCAGCTGGAGTGCTTCTCTGATGAGGTGGACAG
CCGGTGTACCGCCGAGATGAAGGAGCCTGGGGGCAGTGCGGCCGGCTCCCAGCTCGTTTCAGGCGGCGGCGTTGGCGACG
GGTCGAGCATCGAGGTGGCCAAGAAGCGGAGGGGGCGGCCGCCGGGGTCCAAGAACAAGCCGAAGCCGCCCGTGGTGATC
ACGCGGGAGGCGGAGCCCGCGGCGGCGATGCGGCCGCACGTGATCGAGATCCCCGGGGGCCGCGACGTCGCCGAGGCGCT
GGCGCGCTTCGCGAGCCGCCGCAACCTCGGGATCTGCGTGCTCGCCGGCACCGGCGCCGTCGGCAACGTCTCGCTCCGCC
ACCCCTGCCCCACGGCGCCCGGTGCTGCCCCGGCCGTCGTCGTCTTCCAGGGCCGGTTTGAGATCCTCTCCATCTCCGCC
ACCTTCCTGCCCCCGGCCATGGCCGCCGTGGCGCCCCAGGCCGCGGCCGTCGCTGCCGGGCTCTCCATCTCGCTCGCCGG
CCCGCACGGCCAGATCGTCGGCGGCGCAGTCGTGGGCCCGCTCTACGCCGCGACAACAATCGTCGTCGTCGCCGCCGCCT
TCACGAACCCCACCTTCCACCGCCTCCCCGCCGACGACGACGCGCCGATGCCCGTCTCCGTGTCGCTCTCCGGCAGCGGG
GACGCGGACGAACACCGCGCCCGTCAGCACCAGCCAGAGCCGCAAGAGCAGCGCCACCAACGGCGGCACG---------T
GACCCCGTCGGCAGCGCAGCCGGTGGAACCTTGCGGCGTGCCCGTCTACGCCTGCCACCCGCAGCCGCAAGAAGTGATGT
GGCCGCTTGCTGCTCGCGCGCCGCACCAACCGCCACC---GCCGCCGCCACCGTACTGATCAGAGAGAATGTGTACGCCC
-TTTTACCAGATTGCCTGCATCCTGCAAGGTTCATGGCTAGATCTGCATTAACCTTAGCTGCACCTTAGGGTTTAACTC-
-TCTGTTTTCTTGGGCTTCTACTTCTGATTTCGACATTGATCCGCATTTCGTACGGGAAACTGAGAATTGAATGTCAATC
TGCGTTTTCTTGCAAGCTGCATGCACGTCACAATAAGC-----TATAGCCCATTATTATCCGTCTTTGGCAATCTCAACC
TAACCAAATATAGTTCATATGCCAGTATTTAGTTGTACTACG-----TTTGTTTTGTTTTGCACAAGCGCCAAGATTAGT
TCTAGTACTCACCAGCTAG-CCCCAAGCAGCTGCAAGTTGTACATGTACTTGTACTTGTACTATTTTCACACCATACCCT
TTTGTGGTACCATCTATGCTGATAATTGAGAGCCTAAATACTACTCCGTACCACATAATGGGGGAGCTTGCACTGCACCT
CAGGA--------------------AAGAAAACATAATGGGGGAGGTGCAGTGCACTGCAGGCGTGCCCATTCCGTTCCG
TAGAGCCATTGATTTGTGGTTATCTACCGTATGGGCCTTTCAGCCTTCTCCCCATCAGCCGTGTTTCCTACTTTTGCTCT
ACTATACTCCAGTATATATGCACTTGCAAAAAAAAAAGATGCTAGCGAACAGAACA-GAAGGCTGCGATGGACGCAAAGC
ATGCTGGTTGTTACCCCGTCGTGATCGTATGTAGTAGAAATTTGTTCTATGGATGTGGGTCAGGACTAGCCTGTATCTGC
TGGTGATTAACCTTTGAGTTGATGTCAGTGTATATACACCAATGACAAGACATTGGTGTGAATGACAGCATTGATTTTAG
AGCCAGCATTCACTGTGTACACACCGTTAGATCTACTACCTCCCGGGTTTGGG---TTTATTAGATTCCCTTGTATTTTG
AGTTAACCTTTGACCGTAGGTTTGATTTGCAAATATAAGTGGTATGTCATAAATATT
>chr5B_188
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---------------------------GCACCTGATTTCCATGTCTGATTCATTTTCAGACGAAGGAGGAAGTATATCAA
CAAATTAGCCACCATTTTTTTCACTGCGAATTCAACTTGTGATAGTCTATGGTTTGGCCTTGCTCTTCTCGGGCTAGGCA
GTGGACCGGGACATCAAAAAAAAGATCATGATAAGCGTCACACTGA-----------CAACTCTGAACGTTTTTTATGAC
AAATTTAGTGTCAGGAGGATGCCAACTTTAATTGTAAAGCATGTCAATCCTG------TGACAAGTTTCAGTTTTTTCTT
GGGTTTGTTTTTTTATTTTCGTATGACAACTTTGATGATTGTAAAAAATCTCATGTCCGAAGTGCTTCGTGTTATG----
--ACATTTATTATTTAACGGAAAAAAT-----------------------------------------------------
-----------------------TGAACACAGGCGTGAAAAAGACAAAAGGATAAAAGGGAACACCCTCACAGATTAACC
TGGCAGTCGGGTTGGGTTTCACCGGGTCGACCTCTACCACCCTTTGCCCACGACCCTACCCATGGGTATACAAGCAGACC
CACGCCCGACCCTCTACCACCCTTTGCCCACGACCATACCCATGGGTATACAAGCAGACCCACGCCCGAACCCGATGGAT
GACCCAACTTTAGGGCGCCCATCGGGTTTGAAATAAATATTTATTTTTATTTTTATAGTTCAAAAATAGTACATGTCTTG
TCGTACGTGCGCCCATCTGGCAGCTACGACCTGTGAGGAAGAGCTGCAAAGGTCACACCTTCTTATATAGCTAGCAAGCT
GGTTCCTTCTTCTTCTCTGCGCGAGGTGGGACTAAACAAGTCTGTTCCTTTGCGTGAGCACCAACCTTTAGCTGCATGGG
CTGCATATTGCAAGTTGGGCTGAAAATTTAACACAATATACGGACTTGAGGGAGCGGACCTTTAGCTGCATGAGGCCTTG
GGCCAAACAAGTAATTGAGCAAAGGCCTTGAGCGGGGGGAGAGGGACTTTCATATCGGTGAATGTGATCTTGGTGGTCGT
GGTGTGGTGCTTCTTATTAGTGTTTTTTCAGCATAGATGGCTGTTGGATGATAGGGGTTAGTGTATTTTGTGCACCGAAG
GGCCCACATGTCAGATAATCGGGCGACCCATTGGGTGACCCACGAACAAGACCTTATGCCCGTACCCTACCCACGACTAA
TCGGGTTACCCATCGGGCTTACCCATGGATGAGGATGACGATCCATACCCTACCCATTCGGGTCGGGTGCCCATGGGCGC
GGCCGCCCATGGGTTGGATTGCCGGGTTGACTCACAGAGTCCC---------AGTCCATCTCGCCAACGGTGGCAGTGTG
GCACCGCCTCCGCTGCTCAGGGCAGGCTCATCCTGTCCTGTTCCTACTGCAGCTAGCTA------------GCCAGCCTG
CCTGCTACCTTTGATCTCTTCTCCGCGCCCACCACCCCCATATCACTTTCTTATCGACGACCGCTAGCTCCATCCCGTTC
CCAGCTCCAGACCAGAGAACGCCCACGACTAGCGTCGCCACTTGCCGGCTTGCCGCGCCCAACTTCCTCGTGACCCCTTG
CTCCCTCCAACGGCCGCATCTTGCTAGCTTCTACTGCTACGCTCATCATTCGCGACCAAGTGAGCTCCCTCCCTCCATGT
CCTTTGGCAAGCCGGACATGAGCAAGGAGGGCATGTACCAGGAGCGCAAGGACGCGCCGGCCACACGGTTTGCGACGCCG
CCGCCGATGCACCACCGCCATGCCGGCCACGGTGACCACCACCAGCAGCAGCTGGAGTGCTTCTCTGATGAGGTGGACAG
CCGGGGTACCGCCGAGATGAAGGAGCCTGGGGGCAGTGCGGCCGGCTCCCAGCTCGTTTCAGGCGGCGGCGTTGGCGACG
GGTCGAGCATCGAGGTGGCCAAGAAGCGGAGGGGGAGGCCGCCGGGGTCCAAGAACAAGCCGAAGCCGCCCGTGGTGATC
ACGCGGGAGGCGGAGCCCGCGGCGGCGATGCGGCCGCACGTGATCGAGATCCCCGGGGGCCGCGACGTCGCTGAGGCGCT
GGCGCGCTTCGCGAGCCGCCGCAACCTGGGGATCTGCGTGCTCGCCGGCACCGGCGCCGTCGGCAACGTCTCGCTCCGCC
ACCCCTGCCCCACGGCGCCCGGTGCTGCCCCGGCCGTCGTCGTCTTCCAGGGCCGGTTCGAGATCCTCTCCATCTCCGCC
ACCTTCCTGCCCCCGGCCATGGCCGCCGTGGCGCCCCAGGCCGCGGCCGTCGCTGCCGGGCTCTCCATCTCGCTCGCCGG
CCCGCACGGCCAGATCGTCGGCGGCGCAGTTGTGGGCCCGCTCTACGCCGCGACAACAATCGTCGTCGTCGCCGCCGCCT
TCACGAACCCCACCTTCCACCGCCTCCCCGCCGACGACGACGCGCCGATGCCCGTCTCCGTGTCGCTCTCCGGCAGCGCG
GAGGCGGACGAACACCGCGCCCGTCAGCACCAGCCGGAGTCGCAAGAGCAGCGTCACCAACGGCGGCACG---------T
GACCCCGTCGGCAGCACAGTCGGTGGAACCTTGTGGCGTGCCCGTCTACGCCTGCCACCCGCAGCCGCAAGAAGTGATGT
GGCCGCTTGCTGCTCGCGCGCCGCACCAACCGCCACC---GCCGCCGCCACCGTACTGATCAGAGAGAATGTGTACGCCC
TTTTTACCAGATTGCCTGCATCCCGCAAGGTTCATGGCTAGATCTGCATTAACCTTAGCTGCACCTTAGGGTTTAA--C-
-TCTGTTTTCTTGGGCTTCTACTTCTGATTTCGACATTGATCCGCATTTCGTACGGGAAACTGAGAATTGAATGTCAACC
TGCGTTTTCTTGCAAGCTGCATGCACGTCACAAGCTATAGCAGTATAGCCCATTATTATCTGTCTTTGGCAATCTCATCC
TAACCAAATATAGTTCATATGCCAGTATTTAGTTGTACTACG-----TTTGTTTTGTTTTGCACAAGCGCCAAGATTAGT
TCT---ACTCACCAGCTAG-CCCCAAGCAGCTGCAAGTTGTACATGTACTTGTACTTGTACTATTTTGACACCATACCCT
TTTGTGGTACCATCTATGCTGATAATTGAGAGCCTAAATACTACTCCGTACCACATAATGGGGGAGCTTGCACTGCACCT
CCCCATTATGTTTTTTTTTTCTTCCAAAAAAGCATAATGGGGGAGGTGCAGTGCACTGCAGGCGTGCCCATTCCCTTCCG
TAGAGCCATTGATTTGTGGTTCTCTACCGTATGGGCCTTTCAGCCTTCTCCC-ATTAGCCGTGTTTCCTACTTTTTCTCT
ACTCTACTCCAGTATATATGCACTTGCAG-AAAAGAAGACGCTAGCCAACAGAACAGGAAGGCTGCGATGGACGCAAAGC
ATGCTAGTTGTTACCCCGTCGTGATCGTATGTAGTAGAAATTTGGTCCATGGATGTGGGTCAGGACTAGCCAGTATCTGT
TGGTGATTAACCTTTGAGTTGAAGTGAGTGTATATAAATCAATGACAAGACATTGGTGTGAATGACAGCATTGATTTTAG
AGCCATCATTCACTGTGTATACACCGTTAGATCTACGACTACCCCGGTTTTTGGATTTTATTAGACTCACTTGTATTT--
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>chr5A_617
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---------------AAAAAAAATGGACACCGGTGTGGAAAAGACAAAAGGATAAAAGGGAT-ACCCTCCCAGAG-----
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----------------------------------------CCCCAGAGCCCCAGTCCATCTCGCCAACGGTGGCAGTGTG
GCACCGCCTCCGCTGCT-----CAGGCTCATCCTGTCCTGTTCCTACTGCAGCTAGCTA------------GCC------
--TGCTACCTTTGATCTCTTCTCCGCGCCCACCACCCCCATATCACTTTCTTATCGACGACCGCTAGCTCCATCCCGCTC
CCAACT-----CCAGAGAACACCCACGACTAGCATCGCC--------------------CAACTTGCTCGTGACCCATTG
CTCTCTCTAGCAGCCGCATCTTGCAAGCTTCTACTGCTACGCTCATCATTCGCGACCACGTGAGCTTCCTTTCTCCATGT
CCTTCGGCAAGGCGGACATGAGCAAGGAGGGCATGTACCAGGAGCGCAAGGACGCGCCGGCCACACGGTTCGCGACGCCG
CCGCCGATGCACCACCGCCATGCCGGCCACGGTGACCAGCAGCAGCAGCAGCTGGAGTGCTTCTCTGATGAGGTGGACAG
CCGGGGTACCGCCGAGATGAAGGAGCCCGGGGGCAGTGCGGCCGGCTCCCAGCTCGTTTCAGGCGGCGGCGTTGGCGACG
GGTCGAGCATCGAGGTGGCCAAGAAGCGGAGGGGGCGGCCGCCGGGGTCCAAGAACAAGCCGAAGCCGCCCGTGGTGATC
ACGCGGGAGGCGGAGCCCGCGGCGGCGATGCGGCCGCACGTGATCGAGATCCCCGGGGGCCGCGACGTCGCCGAGGCGCT
GGCGCGCTTCGCGAGCCGCCGCAACCTCGGGATCTGCGTGCTCGCGGGCACCGGCGCCGTCGGCAACGTCTCGCTCCGCC
ACCCCTGCCCCACGGCGCCCGGTGCTGCCCCGGCCGTCGTCGTCTTCCAGGGCCGGTTCGAGATCCTCTCCATCTCCGCC
ACCTTCCTGCCCCCGGCCATGGCCGCCGTGGCGCCCCAGGCCGCGGCCGTCGCTGCCGGGCTCTCCATCTCGCTCGCCGG
CCCGCACGGCCAGATCGTCGGCGGCGCAGTCGTGGGCCCGCTCTACGCCGCGACAACAATCGTCGTCGTCGCCGCCGCCT
TCACGAACCCCACCTTCCACCGCCTCCCCGCCGACGACGACGCGCCGATGCCCGTCTCCGTGTCGCTCTGCGGCAGCGCG
GACGCGGATGAACACCGCGCCCGTCAGCACCAGCCGGAGCCGCAAGAGCAGCGTCACCAACGGCGGCAGGCGCCGCACTT
GACCCCGTCGGCAGCACAGCCCGTGGAACCTTGTGGCGTGCCCGTCTACGCCTGCCAGCCGCAGCCGCAAGAAGTGATGT
GGCCGCTTGCTGCTCGCGCGCCGCACCAACCGCCACCGCCGCCGCCGCCGCCGTACTGATCAGAGAGAATGTGTACGCCC
-TTTTACCAGATTGCCTGCATCCTGCAAGGTTCATGGCTAGATCTGCATTAACCTTGGCTGCACCTTAGGGTTTAA--CC
CTCTGTTTTCTTGGGCTTCTACTTCTGATTTCGACATTGATCCGCATTTCGTACGGGGAACTGAGAATTGAATGTCAACC
TTCGTTTTCTTGCAAGCTGCATGCACGTCGCAATAAGC-----TATAGCCCATTATTATCTGTCTTTGGCAATCTCAACC
TAACCAAATATAGTTCATATGCCAGTATTTAGTTGTACTACGTTTGTTTTGTTTTGTTTTGCACAAGCGCCAAGATTAGT
TCT---ACTGGCTAGCTAGCCCCCAACCAACTGCAAGTTGTACATGTACTTGCACTTGTA--------------------
---------CCATCTGTGCTGATAATTGAGAGCCTAAATACTACTCCGTACCGTATAATGGGGGAGCTTGCACTGCACCT
CCCCATTATGTTTT--TTTTCTTGCGAAAAAGCATAATGGGGGAGGTTCAGTGCACTGCAGGCGTGCCCATTCCCTTCCG
TCGAGCCATTGATTTGTGGTTGTCTACCGTATGGGCATTTCAGCC-----------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------------------------
-------------------------------------------------SSS-S----------------S---------
-----SS--S--S-SS-----S-SSSSSSSSS-SSSSSSSSSSSS-SSSSSSSSSSS------S-----S----------
---------------------S-------SS-----------SS----SS-SSSSSSS----------S--------SSS
--------------SS-----S-------S---SS--------------SS----S---S-S----S-S-SSS-SSSSSS
SS---S----S-----SSSSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS---------S-------------------------------------------------------
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---------------------------------------------S------S------SSSSSSSSSSSS---------
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------------------------------------------------------------S-------------------
------------------------------------------------------S-------------------------
----------S---------------------------------------------------------------------
----S---------------------------------------------------------------------------
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----------------------------------------------------------S---------------------
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------------------------------------------------------------------------------S-
-----------------------------------S-----------------S--------------------------
---------------S-----------------S----------------------------------------------
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----------------------------------------------------------------------------SS--
------------------------------------------------------------------------------S-
------------------------------------------------------------S-------------------
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---SSS-------------------------------------------------------------S------------
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-SSS-----------------------S---S------------------------------------------S-----
---------------------S------------------------------S--S-------------------S----
---S------------------------SS----S----S------S---------------------------------
-----S--------------------------------------S--S-----------------------S-------S
----------------------S--S----------S-S-----------------------------------------
-----S-------------S----------------S--SS---S-----SS-------------S--S---------SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_326
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------------------------------------------------------------------TCTCAGGCTAGGCA
GTGGAT--------------------------------------------------------------------------
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>reverse_2085
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----TGTACCGCCGAGATGAAGGA--------------------------------------------------------
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>forward_1901
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-----------------------------------------CTCATCATTCGCGACCAAGC-------------------
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>reverse_3686
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-----GGTTGTTACCCCGTCGTGAT-------------------------------------------------------
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