Multiple sequence alignment - TraesCS5D01G246100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G246100 chr5D 100.000 2312 0 0 1 2312 354261795 354264106 0.000000e+00 4270.0
1 TraesCS5D01G246100 chr5D 90.789 76 2 5 28 100 6168106 6168033 1.890000e-16 97.1
2 TraesCS5D01G246100 chr5D 90.789 76 2 5 28 100 6267140 6267067 1.890000e-16 97.1
3 TraesCS5D01G246100 chr5D 89.873 79 3 5 25 100 12937928 12938004 1.890000e-16 97.1
4 TraesCS5D01G246100 chr5D 90.789 76 2 5 28 100 329159136 329159063 1.890000e-16 97.1
5 TraesCS5D01G246100 chr5D 89.873 79 3 5 25 100 503300741 503300817 1.890000e-16 97.1
6 TraesCS5D01G246100 chr5B 89.380 1789 87 41 6 1739 418508458 418510198 0.000000e+00 2156.0
7 TraesCS5D01G246100 chr5A 89.232 1133 77 24 742 1853 455092752 455093860 0.000000e+00 1375.0
8 TraesCS5D01G246100 chr5A 86.340 776 38 18 6 737 455091966 455092717 0.000000e+00 784.0
9 TraesCS5D01G246100 chr5A 79.891 184 27 8 1632 1808 634040553 634040373 2.410000e-25 126.0
10 TraesCS5D01G246100 chr7A 82.524 206 29 5 1649 1848 205112901 205112697 8.490000e-40 174.0
11 TraesCS5D01G246100 chr1D 82.383 193 26 6 1654 1839 75655040 75655231 6.610000e-36 161.0
12 TraesCS5D01G246100 chr1D 89.873 79 3 5 25 100 254443873 254443949 1.890000e-16 97.1
13 TraesCS5D01G246100 chr3B 82.249 169 27 3 1642 1807 652290852 652291020 2.390000e-30 143.0
14 TraesCS5D01G246100 chr7B 79.710 207 30 10 1649 1846 395259928 395260131 3.100000e-29 139.0
15 TraesCS5D01G246100 chr1A 78.404 213 32 11 1648 1849 399479286 399479077 2.410000e-25 126.0
16 TraesCS5D01G246100 chr1A 81.132 159 26 4 1649 1806 49148550 49148705 8.670000e-25 124.0
17 TraesCS5D01G246100 chr2A 80.838 167 25 5 1647 1808 90250676 90250840 8.670000e-25 124.0
18 TraesCS5D01G246100 chr4D 90.667 75 4 3 28 100 207038073 207038000 1.890000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G246100 chr5D 354261795 354264106 2311 False 4270.0 4270 100.000 1 2312 1 chr5D.!!$F2 2311
1 TraesCS5D01G246100 chr5B 418508458 418510198 1740 False 2156.0 2156 89.380 6 1739 1 chr5B.!!$F1 1733
2 TraesCS5D01G246100 chr5A 455091966 455093860 1894 False 1079.5 1375 87.786 6 1853 2 chr5A.!!$F1 1847

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
481 519 0.873312 CACCTCACAGATCCGCATCG 60.873 60.0 0.0 0.0 33.75 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2114 2244 0.036577 CAGGTGAGCTCTCCCAGTTG 60.037 60.0 27.22 16.88 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 57 7.445121 ACATAATTCCAGATTGCTAGATTCGA 58.555 34.615 0.00 0.00 0.00 3.71
136 169 6.394025 AGGCTATAGCTCTGTTTGTAGTAC 57.606 41.667 23.53 2.49 41.70 2.73
137 170 5.892119 AGGCTATAGCTCTGTTTGTAGTACA 59.108 40.000 23.53 0.00 41.70 2.90
138 171 6.551601 AGGCTATAGCTCTGTTTGTAGTACAT 59.448 38.462 23.53 0.00 41.70 2.29
139 172 7.724506 AGGCTATAGCTCTGTTTGTAGTACATA 59.275 37.037 23.53 0.00 41.70 2.29
160 193 8.773404 ACATATCTTTGTACCTGTTGTAAGTC 57.227 34.615 0.00 0.00 0.00 3.01
187 220 3.956744 AGAGCCTGGAAGTTATGTTTCC 58.043 45.455 0.00 0.00 43.56 3.13
190 223 2.418976 GCCTGGAAGTTATGTTTCCGAC 59.581 50.000 0.00 0.00 45.70 4.79
193 226 5.424757 CCTGGAAGTTATGTTTCCGACATA 58.575 41.667 0.00 0.00 47.00 2.29
206 240 6.369340 TGTTTCCGACATATACGTTTTCATGT 59.631 34.615 0.00 0.00 34.41 3.21
296 332 3.353029 TTGTGGCGCGGATGTGTG 61.353 61.111 8.83 0.00 0.00 3.82
309 345 3.262420 GGATGTGTGTAAGACGCTTCAT 58.738 45.455 0.00 4.99 39.76 2.57
349 385 3.572682 GTGGGTTCCTTTCCTCGAAAAAT 59.427 43.478 0.00 0.00 30.84 1.82
401 439 3.890674 GACGCATGGTCCAGGAAC 58.109 61.111 7.96 0.00 39.90 3.62
481 519 0.873312 CACCTCACAGATCCGCATCG 60.873 60.000 0.00 0.00 33.75 3.84
499 537 3.395669 GCATCTTACGTGCCGGTC 58.604 61.111 1.90 0.00 36.61 4.79
652 696 3.694734 TCCAACCGATTTCGTATACGTC 58.305 45.455 23.67 13.68 40.80 4.34
653 697 2.791004 CCAACCGATTTCGTATACGTCC 59.209 50.000 23.67 10.92 40.80 4.79
674 718 6.046593 GTCCACATATATTCTTCGTTCCACA 58.953 40.000 0.00 0.00 0.00 4.17
737 788 0.958822 ACAACAAAATCACCGGAGCC 59.041 50.000 9.46 0.00 0.00 4.70
739 790 1.545582 CAACAAAATCACCGGAGCCAT 59.454 47.619 9.46 0.00 0.00 4.40
740 791 1.923356 ACAAAATCACCGGAGCCATT 58.077 45.000 9.46 0.00 0.00 3.16
741 792 1.818674 ACAAAATCACCGGAGCCATTC 59.181 47.619 9.46 0.00 0.00 2.67
759 810 4.202243 CCATTCATTTGGGTGTGTCAGTTT 60.202 41.667 0.00 0.00 32.80 2.66
760 811 5.010516 CCATTCATTTGGGTGTGTCAGTTTA 59.989 40.000 0.00 0.00 32.80 2.01
761 812 5.508200 TTCATTTGGGTGTGTCAGTTTAC 57.492 39.130 0.00 0.00 0.00 2.01
762 813 3.562141 TCATTTGGGTGTGTCAGTTTACG 59.438 43.478 0.00 0.00 0.00 3.18
763 814 2.695127 TTGGGTGTGTCAGTTTACGT 57.305 45.000 0.00 0.00 0.00 3.57
833 914 4.223923 GTGGCAGGCATTAGATAGATAGGT 59.776 45.833 0.00 0.00 0.00 3.08
850 931 9.815306 ATAGATAGGTACGCATATATCCATCTT 57.185 33.333 0.00 0.00 0.00 2.40
866 947 5.861727 TCCATCTTGTCATATCCATGTCTG 58.138 41.667 0.00 0.00 33.57 3.51
867 948 5.603813 TCCATCTTGTCATATCCATGTCTGA 59.396 40.000 0.00 0.00 33.57 3.27
868 949 6.271624 TCCATCTTGTCATATCCATGTCTGAT 59.728 38.462 0.00 0.00 33.57 2.90
869 950 6.371825 CCATCTTGTCATATCCATGTCTGATG 59.628 42.308 0.00 0.00 35.11 3.07
870 951 6.490241 TCTTGTCATATCCATGTCTGATGT 57.510 37.500 0.00 0.00 33.57 3.06
871 952 6.519382 TCTTGTCATATCCATGTCTGATGTC 58.481 40.000 0.00 0.00 33.57 3.06
872 953 6.325804 TCTTGTCATATCCATGTCTGATGTCT 59.674 38.462 0.00 0.00 33.57 3.41
873 954 5.850614 TGTCATATCCATGTCTGATGTCTG 58.149 41.667 0.00 0.00 33.57 3.51
957 1038 4.767255 CAGGCTCACCCACTCGGC 62.767 72.222 0.00 0.00 36.11 5.54
1322 1403 1.362406 GCCTGCTAGAAACGGAGCAC 61.362 60.000 0.00 0.00 43.64 4.40
1330 1411 0.716108 GAAACGGAGCACATCGACTG 59.284 55.000 0.00 0.00 0.00 3.51
1344 1425 3.374402 ACTGCTCCAGTCGGGTCG 61.374 66.667 0.00 0.00 41.21 4.79
1347 1428 4.500116 GCTCCAGTCGGGTCGAGC 62.500 72.222 5.93 5.93 40.82 5.03
1453 1544 7.881775 AACCTTATGTTCTCTGTCTTTTGTT 57.118 32.000 0.00 0.00 28.45 2.83
1454 1545 7.881775 ACCTTATGTTCTCTGTCTTTTGTTT 57.118 32.000 0.00 0.00 0.00 2.83
1535 1626 1.715862 GCTTAGCGCAAGTAAGGGGC 61.716 60.000 11.47 0.00 43.74 5.80
1547 1642 2.038557 AGTAAGGGGCAGTGTTGTAGTG 59.961 50.000 0.00 0.00 0.00 2.74
1559 1654 3.000041 TGTTGTAGTGCTCGCTTTATGG 59.000 45.455 0.00 0.00 0.00 2.74
1563 1658 3.871006 TGTAGTGCTCGCTTTATGGAATG 59.129 43.478 0.00 0.00 0.00 2.67
1565 1660 2.092968 AGTGCTCGCTTTATGGAATGGA 60.093 45.455 0.00 0.00 0.00 3.41
1568 1663 4.515191 GTGCTCGCTTTATGGAATGGAATA 59.485 41.667 0.00 0.00 0.00 1.75
1597 1704 8.634475 TGTATGTTGATCTAACGATCTTCTTG 57.366 34.615 0.00 0.00 45.10 3.02
1608 1734 5.690997 ACGATCTTCTTGTTTTTCTTCCC 57.309 39.130 0.00 0.00 0.00 3.97
1627 1754 9.613428 TTCTTCCCTCAATGTACAGTATATTTG 57.387 33.333 0.33 0.00 0.00 2.32
1631 1758 7.126573 TCCCTCAATGTACAGTATATTTGTCCA 59.873 37.037 0.33 0.00 0.00 4.02
1634 1761 9.988350 CTCAATGTACAGTATATTTGTCCAAAC 57.012 33.333 0.33 0.00 32.51 2.93
1635 1762 9.733556 TCAATGTACAGTATATTTGTCCAAACT 57.266 29.630 0.33 0.00 32.51 2.66
1638 1765 8.712285 TGTACAGTATATTTGTCCAAACTAGC 57.288 34.615 0.00 0.00 32.51 3.42
1639 1766 8.315482 TGTACAGTATATTTGTCCAAACTAGCA 58.685 33.333 0.00 0.00 32.51 3.49
1640 1767 7.849804 ACAGTATATTTGTCCAAACTAGCAG 57.150 36.000 0.00 0.00 32.51 4.24
1667 1797 0.323957 GAGTAGGGCGTTTTGGAGGT 59.676 55.000 0.00 0.00 0.00 3.85
1776 1906 5.734855 ACAAGGATGAAATGTATACGTGC 57.265 39.130 0.00 0.00 0.00 5.34
1783 1913 8.250332 AGGATGAAATGTATACGTGCAAAATTT 58.750 29.630 0.00 0.00 0.00 1.82
1784 1914 8.531530 GGATGAAATGTATACGTGCAAAATTTC 58.468 33.333 0.00 12.34 0.00 2.17
1810 1940 2.165437 TCAAATACCTTGAATTGCGGGC 59.835 45.455 0.00 0.00 41.21 6.13
1811 1941 1.846007 AATACCTTGAATTGCGGGCA 58.154 45.000 0.00 0.00 0.00 5.36
1813 1943 1.621992 TACCTTGAATTGCGGGCAAA 58.378 45.000 10.45 0.00 39.55 3.68
1814 1944 0.975887 ACCTTGAATTGCGGGCAAAT 59.024 45.000 10.45 1.33 39.55 2.32
1821 1951 5.793026 TGAATTGCGGGCAAATAAAAATC 57.207 34.783 10.45 2.11 39.55 2.17
1844 1974 3.405831 TGGAGTTTGAGAATGAGCAGTG 58.594 45.455 0.00 0.00 0.00 3.66
1845 1975 2.161211 GGAGTTTGAGAATGAGCAGTGC 59.839 50.000 7.13 7.13 0.00 4.40
1872 2002 9.809096 ATGCATGTACATGAGTATTATACTAGC 57.191 33.333 34.65 16.83 41.20 3.42
1873 2003 8.251026 TGCATGTACATGAGTATTATACTAGCC 58.749 37.037 34.65 14.18 41.20 3.93
1874 2004 7.707035 GCATGTACATGAGTATTATACTAGCCC 59.293 40.741 34.65 10.49 41.20 5.19
1875 2005 8.749354 CATGTACATGAGTATTATACTAGCCCA 58.251 37.037 28.41 0.00 41.20 5.36
1876 2006 8.118976 TGTACATGAGTATTATACTAGCCCAC 57.881 38.462 4.71 2.69 39.59 4.61
1877 2007 6.268825 ACATGAGTATTATACTAGCCCACG 57.731 41.667 4.71 0.00 39.59 4.94
1878 2008 5.773680 ACATGAGTATTATACTAGCCCACGT 59.226 40.000 4.71 0.00 39.59 4.49
1879 2009 5.700722 TGAGTATTATACTAGCCCACGTG 57.299 43.478 9.08 9.08 39.59 4.49
1880 2010 5.379187 TGAGTATTATACTAGCCCACGTGA 58.621 41.667 19.30 0.00 39.59 4.35
1881 2011 6.008331 TGAGTATTATACTAGCCCACGTGAT 58.992 40.000 19.30 5.06 39.59 3.06
1882 2012 6.150641 TGAGTATTATACTAGCCCACGTGATC 59.849 42.308 19.30 8.06 39.59 2.92
1883 2013 4.803098 ATTATACTAGCCCACGTGATCC 57.197 45.455 19.30 4.47 0.00 3.36
1884 2014 1.339097 ATACTAGCCCACGTGATCCC 58.661 55.000 19.30 1.74 0.00 3.85
1885 2015 0.757935 TACTAGCCCACGTGATCCCC 60.758 60.000 19.30 0.00 0.00 4.81
1886 2016 2.039787 TAGCCCACGTGATCCCCA 59.960 61.111 19.30 0.00 0.00 4.96
1887 2017 1.613928 TAGCCCACGTGATCCCCAA 60.614 57.895 19.30 0.00 0.00 4.12
1888 2018 1.202099 TAGCCCACGTGATCCCCAAA 61.202 55.000 19.30 0.00 0.00 3.28
1889 2019 1.379843 GCCCACGTGATCCCCAAAT 60.380 57.895 19.30 0.00 0.00 2.32
1890 2020 0.106918 GCCCACGTGATCCCCAAATA 60.107 55.000 19.30 0.00 0.00 1.40
1891 2021 1.683629 GCCCACGTGATCCCCAAATAA 60.684 52.381 19.30 0.00 0.00 1.40
1892 2022 2.944129 CCCACGTGATCCCCAAATAAT 58.056 47.619 19.30 0.00 0.00 1.28
1893 2023 3.749310 GCCCACGTGATCCCCAAATAATA 60.749 47.826 19.30 0.00 0.00 0.98
1894 2024 4.662278 CCCACGTGATCCCCAAATAATAT 58.338 43.478 19.30 0.00 0.00 1.28
1895 2025 4.700213 CCCACGTGATCCCCAAATAATATC 59.300 45.833 19.30 0.00 0.00 1.63
1896 2026 4.391830 CCACGTGATCCCCAAATAATATCG 59.608 45.833 19.30 0.00 0.00 2.92
1897 2027 4.391830 CACGTGATCCCCAAATAATATCGG 59.608 45.833 10.90 0.00 0.00 4.18
1898 2028 4.041198 ACGTGATCCCCAAATAATATCGGT 59.959 41.667 0.00 0.00 0.00 4.69
1899 2029 4.630069 CGTGATCCCCAAATAATATCGGTC 59.370 45.833 0.00 0.00 0.00 4.79
1900 2030 4.630069 GTGATCCCCAAATAATATCGGTCG 59.370 45.833 0.00 0.00 0.00 4.79
1901 2031 3.048337 TCCCCAAATAATATCGGTCGC 57.952 47.619 0.00 0.00 0.00 5.19
1902 2032 2.081462 CCCCAAATAATATCGGTCGCC 58.919 52.381 0.00 0.00 0.00 5.54
1903 2033 2.290071 CCCCAAATAATATCGGTCGCCT 60.290 50.000 0.00 0.00 0.00 5.52
1904 2034 3.055675 CCCCAAATAATATCGGTCGCCTA 60.056 47.826 0.00 0.00 0.00 3.93
1905 2035 3.930848 CCCAAATAATATCGGTCGCCTAC 59.069 47.826 0.00 0.00 0.00 3.18
1906 2036 4.561938 CCCAAATAATATCGGTCGCCTACA 60.562 45.833 0.00 0.00 0.00 2.74
1907 2037 4.387862 CCAAATAATATCGGTCGCCTACAC 59.612 45.833 0.00 0.00 0.00 2.90
1908 2038 2.975410 TAATATCGGTCGCCTACACG 57.025 50.000 0.00 0.00 0.00 4.49
1909 2039 0.318445 AATATCGGTCGCCTACACGC 60.318 55.000 0.00 0.00 0.00 5.34
1910 2040 1.449726 ATATCGGTCGCCTACACGCA 61.450 55.000 0.00 0.00 0.00 5.24
1911 2041 2.327002 TATCGGTCGCCTACACGCAC 62.327 60.000 0.00 0.00 0.00 5.34
1912 2042 4.415332 CGGTCGCCTACACGCACT 62.415 66.667 0.00 0.00 0.00 4.40
1913 2043 2.506438 GGTCGCCTACACGCACTC 60.506 66.667 0.00 0.00 0.00 3.51
1914 2044 2.874780 GTCGCCTACACGCACTCG 60.875 66.667 0.00 0.00 42.43 4.18
1915 2045 4.771356 TCGCCTACACGCACTCGC 62.771 66.667 0.00 0.00 39.84 5.03
1916 2046 4.778415 CGCCTACACGCACTCGCT 62.778 66.667 0.00 0.00 39.84 4.93
1917 2047 2.488355 GCCTACACGCACTCGCTA 59.512 61.111 0.00 0.00 39.84 4.26
1918 2048 1.586564 GCCTACACGCACTCGCTAG 60.587 63.158 0.00 0.00 39.84 3.42
1919 2049 1.586564 CCTACACGCACTCGCTAGC 60.587 63.158 4.06 4.06 39.84 3.42
1932 2062 4.899239 CTAGCGGGCCGGCTCAAG 62.899 72.222 37.85 27.06 43.54 3.02
1937 2067 2.045340 GGGCCGGCTCAAGCTTTA 60.045 61.111 28.56 0.00 41.70 1.85
1938 2068 2.407428 GGGCCGGCTCAAGCTTTAC 61.407 63.158 28.56 4.74 41.70 2.01
1939 2069 1.377333 GGCCGGCTCAAGCTTTACT 60.377 57.895 28.56 0.00 41.70 2.24
1940 2070 1.648467 GGCCGGCTCAAGCTTTACTG 61.648 60.000 28.56 0.00 41.70 2.74
1941 2071 0.673644 GCCGGCTCAAGCTTTACTGA 60.674 55.000 22.15 0.00 41.70 3.41
1942 2072 1.363744 CCGGCTCAAGCTTTACTGAG 58.636 55.000 8.51 8.51 41.70 3.35
1943 2073 1.338200 CCGGCTCAAGCTTTACTGAGT 60.338 52.381 13.34 0.00 41.70 3.41
1944 2074 1.728971 CGGCTCAAGCTTTACTGAGTG 59.271 52.381 13.34 4.64 41.70 3.51
1945 2075 2.772287 GGCTCAAGCTTTACTGAGTGT 58.228 47.619 13.34 0.00 41.70 3.55
1946 2076 3.142174 GGCTCAAGCTTTACTGAGTGTT 58.858 45.455 13.34 0.00 41.70 3.32
1947 2077 3.565902 GGCTCAAGCTTTACTGAGTGTTT 59.434 43.478 13.34 0.00 41.70 2.83
1948 2078 4.036852 GGCTCAAGCTTTACTGAGTGTTTT 59.963 41.667 13.34 0.00 41.70 2.43
1949 2079 5.208503 GCTCAAGCTTTACTGAGTGTTTTC 58.791 41.667 13.34 0.00 38.21 2.29
1950 2080 5.751243 TCAAGCTTTACTGAGTGTTTTCC 57.249 39.130 0.00 0.00 0.00 3.13
1951 2081 5.437060 TCAAGCTTTACTGAGTGTTTTCCT 58.563 37.500 0.00 0.00 0.00 3.36
1952 2082 5.527582 TCAAGCTTTACTGAGTGTTTTCCTC 59.472 40.000 0.00 0.00 0.00 3.71
1953 2083 4.058817 AGCTTTACTGAGTGTTTTCCTCG 58.941 43.478 0.00 0.00 0.00 4.63
1954 2084 3.364068 GCTTTACTGAGTGTTTTCCTCGC 60.364 47.826 0.00 0.00 0.00 5.03
1955 2085 2.060326 TACTGAGTGTTTTCCTCGCG 57.940 50.000 0.00 0.00 0.00 5.87
1956 2086 1.222115 ACTGAGTGTTTTCCTCGCGC 61.222 55.000 0.00 0.00 0.00 6.86
1957 2087 2.215478 CTGAGTGTTTTCCTCGCGCG 62.215 60.000 26.76 26.76 0.00 6.86
1958 2088 3.631049 GAGTGTTTTCCTCGCGCGC 62.631 63.158 27.95 23.91 0.00 6.86
1959 2089 4.007940 GTGTTTTCCTCGCGCGCA 62.008 61.111 32.61 17.14 0.00 6.09
1960 2090 4.007940 TGTTTTCCTCGCGCGCAC 62.008 61.111 32.61 19.78 0.00 5.34
1961 2091 4.736631 GTTTTCCTCGCGCGCACC 62.737 66.667 32.61 1.16 0.00 5.01
1996 2126 3.570212 GTCCTATGCCCGGCCCAT 61.570 66.667 7.03 10.21 0.00 4.00
1997 2127 2.776526 TCCTATGCCCGGCCCATT 60.777 61.111 7.03 0.00 0.00 3.16
1998 2128 2.198426 CCTATGCCCGGCCCATTT 59.802 61.111 7.03 0.00 0.00 2.32
1999 2129 2.202395 CCTATGCCCGGCCCATTTG 61.202 63.158 7.03 5.49 0.00 2.32
2000 2130 2.837291 TATGCCCGGCCCATTTGC 60.837 61.111 7.03 0.57 0.00 3.68
2001 2131 3.372422 TATGCCCGGCCCATTTGCT 62.372 57.895 7.03 0.00 0.00 3.91
2002 2132 2.870035 TATGCCCGGCCCATTTGCTT 62.870 55.000 7.03 1.42 0.00 3.91
2003 2133 3.705289 GCCCGGCCCATTTGCTTT 61.705 61.111 0.00 0.00 0.00 3.51
2004 2134 3.067985 CCCGGCCCATTTGCTTTT 58.932 55.556 0.00 0.00 0.00 2.27
2005 2135 1.374568 CCCGGCCCATTTGCTTTTT 59.625 52.632 0.00 0.00 0.00 1.94
2038 2168 3.773860 AAAAATGCGTTCACACTGTGA 57.226 38.095 15.86 7.84 41.09 3.58
2039 2169 3.338818 AAAATGCGTTCACACTGTGAG 57.661 42.857 15.86 6.87 43.69 3.51
2040 2170 2.238942 AATGCGTTCACACTGTGAGA 57.761 45.000 15.86 9.53 43.69 3.27
2041 2171 2.462456 ATGCGTTCACACTGTGAGAT 57.538 45.000 15.86 1.65 43.69 2.75
2042 2172 2.238942 TGCGTTCACACTGTGAGATT 57.761 45.000 15.86 0.00 43.69 2.40
2043 2173 2.560504 TGCGTTCACACTGTGAGATTT 58.439 42.857 15.86 0.00 43.69 2.17
2044 2174 2.287644 TGCGTTCACACTGTGAGATTTG 59.712 45.455 15.86 1.71 43.69 2.32
2045 2175 2.543848 GCGTTCACACTGTGAGATTTGA 59.456 45.455 15.86 4.33 43.69 2.69
2046 2176 3.002246 GCGTTCACACTGTGAGATTTGAA 59.998 43.478 15.86 10.44 43.69 2.69
2047 2177 4.518217 CGTTCACACTGTGAGATTTGAAC 58.482 43.478 21.70 21.70 43.69 3.18
2048 2178 4.552767 CGTTCACACTGTGAGATTTGAACC 60.553 45.833 23.80 13.33 43.69 3.62
2049 2179 3.130633 TCACACTGTGAGATTTGAACCG 58.869 45.455 15.86 0.00 37.67 4.44
2050 2180 1.873591 ACACTGTGAGATTTGAACCGC 59.126 47.619 15.86 0.00 0.00 5.68
2051 2181 1.872952 CACTGTGAGATTTGAACCGCA 59.127 47.619 0.32 0.00 0.00 5.69
2052 2182 2.290367 CACTGTGAGATTTGAACCGCAA 59.710 45.455 0.32 0.00 33.88 4.85
2053 2183 7.657658 CACACTGTGAGATTTGAACCGCAAA 62.658 44.000 15.86 0.00 42.23 3.68
2057 2187 3.203161 GAGATTTGAACCGCAAACCTC 57.797 47.619 0.00 0.00 46.83 3.85
2060 2190 1.028905 TTTGAACCGCAAACCTCTGG 58.971 50.000 0.00 0.00 41.37 3.86
2061 2191 0.106918 TTGAACCGCAAACCTCTGGT 60.107 50.000 0.00 0.00 37.65 4.00
2062 2192 0.534203 TGAACCGCAAACCTCTGGTC 60.534 55.000 0.00 0.00 33.12 4.02
2063 2193 0.250338 GAACCGCAAACCTCTGGTCT 60.250 55.000 0.00 0.00 33.12 3.85
2064 2194 1.001633 GAACCGCAAACCTCTGGTCTA 59.998 52.381 0.00 0.00 33.12 2.59
2065 2195 0.608640 ACCGCAAACCTCTGGTCTAG 59.391 55.000 0.00 0.00 33.12 2.43
2066 2196 0.608640 CCGCAAACCTCTGGTCTAGT 59.391 55.000 0.00 0.00 33.12 2.57
2067 2197 1.002087 CCGCAAACCTCTGGTCTAGTT 59.998 52.381 0.00 0.00 33.12 2.24
2068 2198 2.338500 CGCAAACCTCTGGTCTAGTTC 58.662 52.381 0.00 0.00 33.12 3.01
2069 2199 2.701107 GCAAACCTCTGGTCTAGTTCC 58.299 52.381 0.00 0.00 33.12 3.62
2070 2200 2.038557 GCAAACCTCTGGTCTAGTTCCA 59.961 50.000 8.58 8.58 33.12 3.53
2071 2201 3.496160 GCAAACCTCTGGTCTAGTTCCAA 60.496 47.826 9.77 2.96 33.12 3.53
2072 2202 4.714632 CAAACCTCTGGTCTAGTTCCAAA 58.285 43.478 9.77 0.00 33.12 3.28
2073 2203 4.353383 AACCTCTGGTCTAGTTCCAAAC 57.647 45.455 9.77 0.00 33.12 2.93
2074 2204 3.314693 ACCTCTGGTCTAGTTCCAAACA 58.685 45.455 9.77 0.00 34.35 2.83
2075 2205 3.325135 ACCTCTGGTCTAGTTCCAAACAG 59.675 47.826 9.77 0.01 34.35 3.16
2076 2206 3.307059 CCTCTGGTCTAGTTCCAAACAGG 60.307 52.174 9.77 10.50 34.35 4.00
2121 2251 5.545063 AAAAACAGGAATAACCAACTGGG 57.455 39.130 0.00 0.00 42.04 4.45
2122 2252 4.463050 AAACAGGAATAACCAACTGGGA 57.537 40.909 0.00 0.00 42.04 4.37
2123 2253 3.721087 ACAGGAATAACCAACTGGGAG 57.279 47.619 0.00 0.00 42.04 4.30
2124 2254 3.256704 ACAGGAATAACCAACTGGGAGA 58.743 45.455 0.00 0.00 42.04 3.71
2125 2255 3.264450 ACAGGAATAACCAACTGGGAGAG 59.736 47.826 0.00 0.00 42.04 3.20
2126 2256 2.239907 AGGAATAACCAACTGGGAGAGC 59.760 50.000 0.00 0.00 42.04 4.09
2127 2257 2.239907 GGAATAACCAACTGGGAGAGCT 59.760 50.000 0.00 0.00 41.15 4.09
2128 2258 3.536570 GAATAACCAACTGGGAGAGCTC 58.463 50.000 5.27 5.27 41.15 4.09
2129 2259 2.024176 TAACCAACTGGGAGAGCTCA 57.976 50.000 17.77 0.00 41.15 4.26
2130 2260 0.398318 AACCAACTGGGAGAGCTCAC 59.602 55.000 17.77 9.95 41.15 3.51
2131 2261 1.298014 CCAACTGGGAGAGCTCACC 59.702 63.158 20.90 20.90 40.01 4.02
2132 2262 1.197430 CCAACTGGGAGAGCTCACCT 61.197 60.000 26.58 7.34 40.01 4.00
2133 2263 0.036577 CAACTGGGAGAGCTCACCTG 60.037 60.000 26.58 24.89 30.24 4.00
2134 2264 1.835927 AACTGGGAGAGCTCACCTGC 61.836 60.000 26.58 13.63 30.24 4.85
2136 2266 2.241479 CTGGGAGAGCTCACCTGCTG 62.241 65.000 26.58 12.97 44.17 4.41
2137 2267 2.289532 GGGAGAGCTCACCTGCTGT 61.290 63.158 26.58 0.00 44.17 4.40
2138 2268 1.079266 GGAGAGCTCACCTGCTGTG 60.079 63.158 21.64 1.06 44.17 3.66
2139 2269 1.741032 GAGAGCTCACCTGCTGTGC 60.741 63.158 17.77 0.00 45.03 4.57
2141 2271 3.797331 AGCTCACCTGCTGTGCTA 58.203 55.556 0.00 0.00 45.84 3.49
2142 2272 1.595882 AGCTCACCTGCTGTGCTAG 59.404 57.895 0.00 0.00 45.84 3.42
2143 2273 1.190833 AGCTCACCTGCTGTGCTAGT 61.191 55.000 0.00 0.00 45.84 2.57
2144 2274 0.321122 GCTCACCTGCTGTGCTAGTT 60.321 55.000 2.50 0.00 45.03 2.24
2145 2275 1.066858 GCTCACCTGCTGTGCTAGTTA 60.067 52.381 2.50 0.00 45.03 2.24
2146 2276 2.611518 CTCACCTGCTGTGCTAGTTAC 58.388 52.381 2.50 0.00 45.03 2.50
2147 2277 2.232452 CTCACCTGCTGTGCTAGTTACT 59.768 50.000 2.50 0.00 45.03 2.24
2148 2278 2.632996 TCACCTGCTGTGCTAGTTACTT 59.367 45.455 0.00 0.00 45.03 2.24
2149 2279 2.738846 CACCTGCTGTGCTAGTTACTTG 59.261 50.000 0.00 0.00 38.34 3.16
2150 2280 2.289694 ACCTGCTGTGCTAGTTACTTGG 60.290 50.000 0.00 0.00 0.00 3.61
2151 2281 2.289694 CCTGCTGTGCTAGTTACTTGGT 60.290 50.000 0.00 0.00 0.00 3.67
2152 2282 3.403038 CTGCTGTGCTAGTTACTTGGTT 58.597 45.455 0.00 0.00 0.00 3.67
2153 2283 3.815401 CTGCTGTGCTAGTTACTTGGTTT 59.185 43.478 0.00 0.00 0.00 3.27
2154 2284 4.204012 TGCTGTGCTAGTTACTTGGTTTT 58.796 39.130 0.00 0.00 0.00 2.43
2155 2285 4.642885 TGCTGTGCTAGTTACTTGGTTTTT 59.357 37.500 0.00 0.00 0.00 1.94
2178 2308 8.873215 TTTTTGCGTCAAATGTAAGGATAAAA 57.127 26.923 5.97 0.00 33.19 1.52
2179 2309 7.861176 TTTGCGTCAAATGTAAGGATAAAAC 57.139 32.000 1.63 0.00 0.00 2.43
2180 2310 6.561737 TGCGTCAAATGTAAGGATAAAACA 57.438 33.333 0.00 0.00 0.00 2.83
2181 2311 6.971602 TGCGTCAAATGTAAGGATAAAACAA 58.028 32.000 0.00 0.00 0.00 2.83
2182 2312 7.426410 TGCGTCAAATGTAAGGATAAAACAAA 58.574 30.769 0.00 0.00 0.00 2.83
2183 2313 8.085296 TGCGTCAAATGTAAGGATAAAACAAAT 58.915 29.630 0.00 0.00 0.00 2.32
2184 2314 8.372521 GCGTCAAATGTAAGGATAAAACAAATG 58.627 33.333 0.00 0.00 0.00 2.32
2185 2315 8.372521 CGTCAAATGTAAGGATAAAACAAATGC 58.627 33.333 0.00 0.00 0.00 3.56
2186 2316 9.202273 GTCAAATGTAAGGATAAAACAAATGCA 57.798 29.630 0.00 0.00 0.00 3.96
2187 2317 9.421806 TCAAATGTAAGGATAAAACAAATGCAG 57.578 29.630 0.00 0.00 0.00 4.41
2188 2318 7.832503 AATGTAAGGATAAAACAAATGCAGC 57.167 32.000 0.00 0.00 0.00 5.25
2189 2319 5.398169 TGTAAGGATAAAACAAATGCAGCG 58.602 37.500 0.00 0.00 0.00 5.18
2190 2320 4.519540 AAGGATAAAACAAATGCAGCGT 57.480 36.364 0.00 0.00 0.00 5.07
2191 2321 4.096732 AGGATAAAACAAATGCAGCGTC 57.903 40.909 0.00 0.00 0.00 5.19
2192 2322 3.758554 AGGATAAAACAAATGCAGCGTCT 59.241 39.130 0.00 0.00 0.00 4.18
2193 2323 4.218417 AGGATAAAACAAATGCAGCGTCTT 59.782 37.500 0.00 0.00 0.00 3.01
2194 2324 5.414454 AGGATAAAACAAATGCAGCGTCTTA 59.586 36.000 0.00 0.00 0.00 2.10
2195 2325 6.095440 AGGATAAAACAAATGCAGCGTCTTAT 59.905 34.615 0.00 0.00 0.00 1.73
2196 2326 6.751888 GGATAAAACAAATGCAGCGTCTTATT 59.248 34.615 0.00 0.00 0.00 1.40
2197 2327 7.275560 GGATAAAACAAATGCAGCGTCTTATTT 59.724 33.333 0.00 0.00 0.00 1.40
2198 2328 6.452244 AAAACAAATGCAGCGTCTTATTTC 57.548 33.333 0.00 0.00 0.00 2.17
2199 2329 5.376854 AACAAATGCAGCGTCTTATTTCT 57.623 34.783 0.00 0.00 0.00 2.52
2200 2330 5.376854 ACAAATGCAGCGTCTTATTTCTT 57.623 34.783 0.00 0.00 0.00 2.52
2201 2331 5.772521 ACAAATGCAGCGTCTTATTTCTTT 58.227 33.333 0.00 0.00 0.00 2.52
2202 2332 6.215845 ACAAATGCAGCGTCTTATTTCTTTT 58.784 32.000 0.00 0.00 0.00 2.27
2203 2333 6.701400 ACAAATGCAGCGTCTTATTTCTTTTT 59.299 30.769 0.00 0.00 0.00 1.94
2221 2351 2.726832 TTTCGGTTTTATTTGGCCGG 57.273 45.000 0.00 0.00 43.87 6.13
2222 2352 1.618487 TTCGGTTTTATTTGGCCGGT 58.382 45.000 1.90 0.00 43.87 5.28
2223 2353 1.618487 TCGGTTTTATTTGGCCGGTT 58.382 45.000 1.90 0.00 43.87 4.44
2224 2354 1.962100 TCGGTTTTATTTGGCCGGTTT 59.038 42.857 1.90 0.00 43.87 3.27
2225 2355 2.364647 TCGGTTTTATTTGGCCGGTTTT 59.635 40.909 1.90 0.00 43.87 2.43
2226 2356 2.732500 CGGTTTTATTTGGCCGGTTTTC 59.267 45.455 1.90 0.00 40.45 2.29
2227 2357 3.553302 CGGTTTTATTTGGCCGGTTTTCT 60.553 43.478 1.90 0.00 40.45 2.52
2228 2358 3.991773 GGTTTTATTTGGCCGGTTTTCTC 59.008 43.478 1.90 0.00 0.00 2.87
2229 2359 4.262292 GGTTTTATTTGGCCGGTTTTCTCT 60.262 41.667 1.90 0.00 0.00 3.10
2230 2360 4.513198 TTTATTTGGCCGGTTTTCTCTG 57.487 40.909 1.90 0.00 0.00 3.35
2231 2361 1.256812 ATTTGGCCGGTTTTCTCTGG 58.743 50.000 1.90 0.00 36.96 3.86
2232 2362 0.183971 TTTGGCCGGTTTTCTCTGGA 59.816 50.000 1.90 0.00 36.02 3.86
2233 2363 0.404040 TTGGCCGGTTTTCTCTGGAT 59.596 50.000 1.90 0.00 36.02 3.41
2234 2364 0.404040 TGGCCGGTTTTCTCTGGATT 59.596 50.000 1.90 0.00 36.02 3.01
2235 2365 1.203001 TGGCCGGTTTTCTCTGGATTT 60.203 47.619 1.90 0.00 36.02 2.17
2236 2366 1.893137 GGCCGGTTTTCTCTGGATTTT 59.107 47.619 1.90 0.00 36.02 1.82
2237 2367 2.299013 GGCCGGTTTTCTCTGGATTTTT 59.701 45.455 1.90 0.00 36.02 1.94
2272 2402 9.996554 TTTTTCTTTTGTCTTTCTTTCTTCCTT 57.003 25.926 0.00 0.00 0.00 3.36
2273 2403 9.996554 TTTTCTTTTGTCTTTCTTTCTTCCTTT 57.003 25.926 0.00 0.00 0.00 3.11
2274 2404 8.986477 TTCTTTTGTCTTTCTTTCTTCCTTTG 57.014 30.769 0.00 0.00 0.00 2.77
2275 2405 7.035612 TCTTTTGTCTTTCTTTCTTCCTTTGC 58.964 34.615 0.00 0.00 0.00 3.68
2276 2406 6.530019 TTTGTCTTTCTTTCTTCCTTTGCT 57.470 33.333 0.00 0.00 0.00 3.91
2277 2407 6.530019 TTGTCTTTCTTTCTTCCTTTGCTT 57.470 33.333 0.00 0.00 0.00 3.91
2278 2408 7.639113 TTGTCTTTCTTTCTTCCTTTGCTTA 57.361 32.000 0.00 0.00 0.00 3.09
2279 2409 7.639113 TGTCTTTCTTTCTTCCTTTGCTTAA 57.361 32.000 0.00 0.00 0.00 1.85
2280 2410 8.062065 TGTCTTTCTTTCTTCCTTTGCTTAAA 57.938 30.769 0.00 0.00 0.00 1.52
2281 2411 8.695456 TGTCTTTCTTTCTTCCTTTGCTTAAAT 58.305 29.630 0.00 0.00 0.00 1.40
2282 2412 9.534565 GTCTTTCTTTCTTCCTTTGCTTAAATT 57.465 29.630 0.00 0.00 0.00 1.82
2285 2415 7.713764 TCTTTCTTCCTTTGCTTAAATTTGC 57.286 32.000 0.00 0.00 0.00 3.68
2286 2416 7.271511 TCTTTCTTCCTTTGCTTAAATTTGCA 58.728 30.769 0.00 0.00 37.42 4.08
2287 2417 7.768120 TCTTTCTTCCTTTGCTTAAATTTGCAA 59.232 29.630 10.87 10.87 45.83 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.945008 CAACAGGTGCAGAGACAAAGAA 59.055 45.455 0.00 0.00 0.00 2.52
1 2 2.092968 ACAACAGGTGCAGAGACAAAGA 60.093 45.455 0.00 0.00 0.00 2.52
2 3 2.292267 ACAACAGGTGCAGAGACAAAG 58.708 47.619 0.00 0.00 0.00 2.77
3 4 2.418368 ACAACAGGTGCAGAGACAAA 57.582 45.000 0.00 0.00 0.00 2.83
4 5 3.552132 TTACAACAGGTGCAGAGACAA 57.448 42.857 0.00 0.00 0.00 3.18
13 14 7.447374 TCTGGAATTATGTTTACAACAGGTG 57.553 36.000 0.00 0.00 45.95 4.00
50 57 5.905331 TCACTATTCATCAACCCCTACTGAT 59.095 40.000 0.00 0.00 32.40 2.90
136 169 7.010183 CCGACTTACAACAGGTACAAAGATATG 59.990 40.741 0.00 0.00 0.00 1.78
137 170 7.039882 CCGACTTACAACAGGTACAAAGATAT 58.960 38.462 0.00 0.00 0.00 1.63
138 171 6.209192 TCCGACTTACAACAGGTACAAAGATA 59.791 38.462 0.00 0.00 0.00 1.98
139 172 5.011329 TCCGACTTACAACAGGTACAAAGAT 59.989 40.000 0.00 0.00 0.00 2.40
160 193 0.610687 AACTTCCAGGCTCTTCTCCG 59.389 55.000 0.00 0.00 0.00 4.63
296 332 5.511088 TTCGAGAAAATGAAGCGTCTTAC 57.489 39.130 0.31 0.00 0.00 2.34
309 345 4.586841 ACCCACCAATTTCATTCGAGAAAA 59.413 37.500 4.20 0.00 40.54 2.29
349 385 4.168922 TGCGTGTCGAAGATTCTTCTTA 57.831 40.909 21.03 8.97 42.34 2.10
401 439 2.093869 CCATGCAAAAGATGGAACTGGG 60.094 50.000 0.00 0.00 42.81 4.45
652 696 6.918892 TTGTGGAACGAAGAATATATGTGG 57.081 37.500 0.00 0.00 42.39 4.17
653 697 9.438291 GAATTTGTGGAACGAAGAATATATGTG 57.562 33.333 0.00 0.00 44.87 3.21
674 718 6.983307 CAGACAGATAACCATCTCGAGAATTT 59.017 38.462 20.91 14.48 39.62 1.82
737 788 4.589216 AACTGACACACCCAAATGAATG 57.411 40.909 0.00 0.00 0.00 2.67
739 790 4.035792 CGTAAACTGACACACCCAAATGAA 59.964 41.667 0.00 0.00 0.00 2.57
740 791 3.562141 CGTAAACTGACACACCCAAATGA 59.438 43.478 0.00 0.00 0.00 2.57
741 792 3.314080 ACGTAAACTGACACACCCAAATG 59.686 43.478 0.00 0.00 0.00 2.32
759 810 4.515191 ACACGGAGAGTTTACAGTTACGTA 59.485 41.667 0.00 0.00 0.00 3.57
760 811 3.316308 ACACGGAGAGTTTACAGTTACGT 59.684 43.478 0.00 0.00 0.00 3.57
761 812 3.893720 ACACGGAGAGTTTACAGTTACG 58.106 45.455 0.00 0.00 0.00 3.18
833 914 8.360390 GGATATGACAAGATGGATATATGCGTA 58.640 37.037 0.00 0.00 0.00 4.42
850 931 5.364735 ACAGACATCAGACATGGATATGACA 59.635 40.000 0.00 0.00 37.73 3.58
866 947 4.332819 CCGTGGGAAGAAATAACAGACATC 59.667 45.833 0.00 0.00 0.00 3.06
867 948 4.019681 TCCGTGGGAAGAAATAACAGACAT 60.020 41.667 0.00 0.00 0.00 3.06
868 949 3.325425 TCCGTGGGAAGAAATAACAGACA 59.675 43.478 0.00 0.00 0.00 3.41
869 950 3.934068 TCCGTGGGAAGAAATAACAGAC 58.066 45.455 0.00 0.00 0.00 3.51
870 951 4.837093 ATCCGTGGGAAGAAATAACAGA 57.163 40.909 0.00 0.00 34.34 3.41
871 952 4.034048 CGAATCCGTGGGAAGAAATAACAG 59.966 45.833 0.00 0.00 34.34 3.16
872 953 3.936453 CGAATCCGTGGGAAGAAATAACA 59.064 43.478 0.00 0.00 34.34 2.41
873 954 4.531659 CGAATCCGTGGGAAGAAATAAC 57.468 45.455 0.00 0.00 34.34 1.89
937 1018 2.665603 GAGTGGGTGAGCCTGTCC 59.334 66.667 1.06 0.00 34.45 4.02
957 1038 4.634004 TGCTTTCACTTAATATGTGTCCGG 59.366 41.667 0.00 0.00 36.83 5.14
959 1040 6.494893 TGTGCTTTCACTTAATATGTGTCC 57.505 37.500 6.25 0.00 43.49 4.02
1221 1302 3.763127 GATGTACCCGTCGCCGTCC 62.763 68.421 0.00 0.00 0.00 4.79
1330 1411 4.500116 GCTCGACCCGACTGGAGC 62.500 72.222 0.00 0.00 44.24 4.70
1339 1420 2.202623 CACGTAGCTGCTCGACCC 60.203 66.667 21.95 2.00 0.00 4.46
1450 1541 9.736023 GCTAGAGAGAAAATGAAAAGAAAAACA 57.264 29.630 0.00 0.00 0.00 2.83
1451 1542 9.958234 AGCTAGAGAGAAAATGAAAAGAAAAAC 57.042 29.630 0.00 0.00 0.00 2.43
1452 1543 9.956720 CAGCTAGAGAGAAAATGAAAAGAAAAA 57.043 29.630 0.00 0.00 0.00 1.94
1453 1544 8.078596 GCAGCTAGAGAGAAAATGAAAAGAAAA 58.921 33.333 0.00 0.00 0.00 2.29
1454 1545 7.229306 TGCAGCTAGAGAGAAAATGAAAAGAAA 59.771 33.333 0.00 0.00 0.00 2.52
1492 1583 4.823442 CAGGCATGCACCTTCTATTATTCA 59.177 41.667 21.36 0.00 38.26 2.57
1493 1584 4.217118 CCAGGCATGCACCTTCTATTATTC 59.783 45.833 21.36 0.00 38.26 1.75
1535 1626 1.502231 AAGCGAGCACTACAACACTG 58.498 50.000 0.00 0.00 0.00 3.66
1547 1642 5.689383 TTATTCCATTCCATAAAGCGAGC 57.311 39.130 0.00 0.00 0.00 5.03
1587 1694 5.470098 TGAGGGAAGAAAAACAAGAAGATCG 59.530 40.000 0.00 0.00 0.00 3.69
1592 1699 6.790232 ACATTGAGGGAAGAAAAACAAGAA 57.210 33.333 0.00 0.00 0.00 2.52
1593 1700 6.831353 TGTACATTGAGGGAAGAAAAACAAGA 59.169 34.615 0.00 0.00 0.00 3.02
1594 1701 7.038154 TGTACATTGAGGGAAGAAAAACAAG 57.962 36.000 0.00 0.00 0.00 3.16
1597 1704 6.635030 ACTGTACATTGAGGGAAGAAAAAC 57.365 37.500 0.00 0.00 0.00 2.43
1608 1734 9.988350 GTTTGGACAAATATACTGTACATTGAG 57.012 33.333 10.73 4.01 37.47 3.02
1750 1880 8.433126 GCACGTATACATTTCATCCTTGTATAC 58.567 37.037 16.76 16.76 46.53 1.47
1756 1886 6.751514 TTTGCACGTATACATTTCATCCTT 57.248 33.333 3.32 0.00 0.00 3.36
1757 1887 6.751514 TTTTGCACGTATACATTTCATCCT 57.248 33.333 3.32 0.00 0.00 3.24
1772 1902 7.276218 AGGTATTTGATCATGAAATTTTGCACG 59.724 33.333 0.00 0.00 0.00 5.34
1783 1913 6.459985 CCGCAATTCAAGGTATTTGATCATGA 60.460 38.462 0.00 0.00 44.90 3.07
1784 1914 5.688621 CCGCAATTCAAGGTATTTGATCATG 59.311 40.000 0.00 0.00 44.90 3.07
1808 1938 7.818930 TCTCAAACTCCATGATTTTTATTTGCC 59.181 33.333 0.00 0.00 0.00 4.52
1814 1944 8.246180 GCTCATTCTCAAACTCCATGATTTTTA 58.754 33.333 0.00 0.00 0.00 1.52
1821 1951 4.008330 ACTGCTCATTCTCAAACTCCATG 58.992 43.478 0.00 0.00 0.00 3.66
1844 1974 8.484641 AGTATAATACTCATGTACATGCATGC 57.515 34.615 27.71 11.82 44.20 4.06
1850 1980 8.750298 GTGGGCTAGTATAATACTCATGTACAT 58.250 37.037 1.41 1.41 40.14 2.29
1851 1981 7.094506 CGTGGGCTAGTATAATACTCATGTACA 60.095 40.741 0.00 0.00 40.14 2.90
1852 1982 7.094463 ACGTGGGCTAGTATAATACTCATGTAC 60.094 40.741 0.00 0.00 40.14 2.90
1853 1983 6.944290 ACGTGGGCTAGTATAATACTCATGTA 59.056 38.462 0.00 0.00 40.14 2.29
1854 1984 5.773680 ACGTGGGCTAGTATAATACTCATGT 59.226 40.000 0.00 3.30 40.14 3.21
1855 1985 6.072119 TCACGTGGGCTAGTATAATACTCATG 60.072 42.308 17.00 0.00 40.14 3.07
1856 1986 6.008331 TCACGTGGGCTAGTATAATACTCAT 58.992 40.000 17.00 0.00 40.14 2.90
1857 1987 5.379187 TCACGTGGGCTAGTATAATACTCA 58.621 41.667 17.00 0.00 40.14 3.41
1858 1988 5.954296 TCACGTGGGCTAGTATAATACTC 57.046 43.478 17.00 0.00 40.14 2.59
1859 1989 5.418209 GGATCACGTGGGCTAGTATAATACT 59.582 44.000 17.00 0.00 42.68 2.12
1860 1990 5.393896 GGGATCACGTGGGCTAGTATAATAC 60.394 48.000 17.00 0.00 0.00 1.89
1861 1991 4.708421 GGGATCACGTGGGCTAGTATAATA 59.292 45.833 17.00 0.00 0.00 0.98
1862 1992 3.514309 GGGATCACGTGGGCTAGTATAAT 59.486 47.826 17.00 0.00 0.00 1.28
1863 1993 2.895404 GGGATCACGTGGGCTAGTATAA 59.105 50.000 17.00 0.00 0.00 0.98
1864 1994 2.522185 GGGATCACGTGGGCTAGTATA 58.478 52.381 17.00 0.00 0.00 1.47
1865 1995 1.339097 GGGATCACGTGGGCTAGTAT 58.661 55.000 17.00 0.00 0.00 2.12
1866 1996 0.757935 GGGGATCACGTGGGCTAGTA 60.758 60.000 17.00 0.00 0.00 1.82
1867 1997 2.064581 GGGGATCACGTGGGCTAGT 61.065 63.158 17.00 0.00 0.00 2.57
1868 1998 1.622607 TTGGGGATCACGTGGGCTAG 61.623 60.000 17.00 0.00 0.00 3.42
1869 1999 1.202099 TTTGGGGATCACGTGGGCTA 61.202 55.000 17.00 0.00 0.00 3.93
1870 2000 1.863155 ATTTGGGGATCACGTGGGCT 61.863 55.000 17.00 0.26 0.00 5.19
1871 2001 0.106918 TATTTGGGGATCACGTGGGC 60.107 55.000 17.00 7.87 0.00 5.36
1872 2002 2.428544 TTATTTGGGGATCACGTGGG 57.571 50.000 17.00 0.00 0.00 4.61
1873 2003 4.391830 CGATATTATTTGGGGATCACGTGG 59.608 45.833 17.00 0.00 0.00 4.94
1874 2004 4.391830 CCGATATTATTTGGGGATCACGTG 59.608 45.833 9.94 9.94 0.00 4.49
1875 2005 4.041198 ACCGATATTATTTGGGGATCACGT 59.959 41.667 0.00 0.00 0.00 4.49
1876 2006 4.575885 ACCGATATTATTTGGGGATCACG 58.424 43.478 0.00 0.00 0.00 4.35
1877 2007 4.630069 CGACCGATATTATTTGGGGATCAC 59.370 45.833 0.00 0.00 0.00 3.06
1878 2008 4.827692 CGACCGATATTATTTGGGGATCA 58.172 43.478 0.00 0.00 0.00 2.92
1879 2009 3.621715 GCGACCGATATTATTTGGGGATC 59.378 47.826 0.00 0.00 0.00 3.36
1880 2010 3.606687 GCGACCGATATTATTTGGGGAT 58.393 45.455 0.00 0.00 0.00 3.85
1881 2011 2.289819 GGCGACCGATATTATTTGGGGA 60.290 50.000 0.00 0.00 0.00 4.81
1882 2012 2.081462 GGCGACCGATATTATTTGGGG 58.919 52.381 0.00 0.00 0.00 4.96
1883 2013 3.053831 AGGCGACCGATATTATTTGGG 57.946 47.619 0.00 0.00 0.00 4.12
1884 2014 4.387862 GTGTAGGCGACCGATATTATTTGG 59.612 45.833 0.00 0.00 0.00 3.28
1885 2015 4.089493 CGTGTAGGCGACCGATATTATTTG 59.911 45.833 0.00 0.00 0.00 2.32
1886 2016 4.232221 CGTGTAGGCGACCGATATTATTT 58.768 43.478 0.00 0.00 0.00 1.40
1887 2017 3.829948 CGTGTAGGCGACCGATATTATT 58.170 45.455 0.00 0.00 0.00 1.40
1888 2018 2.415090 GCGTGTAGGCGACCGATATTAT 60.415 50.000 11.41 0.00 0.00 1.28
1889 2019 1.069022 GCGTGTAGGCGACCGATATTA 60.069 52.381 11.41 0.00 0.00 0.98
1890 2020 0.318445 GCGTGTAGGCGACCGATATT 60.318 55.000 11.41 0.00 0.00 1.28
1891 2021 1.285023 GCGTGTAGGCGACCGATAT 59.715 57.895 11.41 0.00 0.00 1.63
1892 2022 2.114051 TGCGTGTAGGCGACCGATA 61.114 57.895 11.41 0.00 35.06 2.92
1893 2023 3.445687 TGCGTGTAGGCGACCGAT 61.446 61.111 11.41 0.00 35.06 4.18
1894 2024 4.409218 GTGCGTGTAGGCGACCGA 62.409 66.667 11.41 0.00 35.06 4.69
1895 2025 4.415332 AGTGCGTGTAGGCGACCG 62.415 66.667 0.00 0.00 35.06 4.79
1896 2026 2.506438 GAGTGCGTGTAGGCGACC 60.506 66.667 0.00 0.00 35.06 4.79
1897 2027 2.874780 CGAGTGCGTGTAGGCGAC 60.875 66.667 0.00 0.00 35.06 5.19
1898 2028 4.771356 GCGAGTGCGTGTAGGCGA 62.771 66.667 0.00 0.00 40.36 5.54
1915 2045 4.899239 CTTGAGCCGGCCCGCTAG 62.899 72.222 26.15 15.23 39.87 3.42
1919 2049 3.969250 TAAAGCTTGAGCCGGCCCG 62.969 63.158 26.15 10.32 43.38 6.13
1920 2050 2.045340 TAAAGCTTGAGCCGGCCC 60.045 61.111 26.15 13.59 43.38 5.80
1921 2051 1.377333 AGTAAAGCTTGAGCCGGCC 60.377 57.895 26.15 15.80 43.38 6.13
1922 2052 0.673644 TCAGTAAAGCTTGAGCCGGC 60.674 55.000 21.89 21.89 43.38 6.13
1923 2053 1.338200 ACTCAGTAAAGCTTGAGCCGG 60.338 52.381 12.14 0.00 43.38 6.13
1924 2054 1.728971 CACTCAGTAAAGCTTGAGCCG 59.271 52.381 12.14 1.85 43.38 5.52
1925 2055 2.772287 ACACTCAGTAAAGCTTGAGCC 58.228 47.619 12.14 0.00 43.38 4.70
1926 2056 4.820284 AAACACTCAGTAAAGCTTGAGC 57.180 40.909 12.14 0.00 42.49 4.26
1927 2057 5.529060 AGGAAAACACTCAGTAAAGCTTGAG 59.471 40.000 10.89 10.89 34.81 3.02
1928 2058 5.437060 AGGAAAACACTCAGTAAAGCTTGA 58.563 37.500 0.00 0.00 0.00 3.02
1929 2059 5.559035 CGAGGAAAACACTCAGTAAAGCTTG 60.559 44.000 0.00 0.00 34.66 4.01
1930 2060 4.511826 CGAGGAAAACACTCAGTAAAGCTT 59.488 41.667 0.00 0.00 34.66 3.74
1931 2061 4.058817 CGAGGAAAACACTCAGTAAAGCT 58.941 43.478 0.00 0.00 34.66 3.74
1932 2062 3.364068 GCGAGGAAAACACTCAGTAAAGC 60.364 47.826 0.00 0.00 34.66 3.51
1933 2063 3.120991 CGCGAGGAAAACACTCAGTAAAG 60.121 47.826 0.00 0.00 34.66 1.85
1934 2064 2.798283 CGCGAGGAAAACACTCAGTAAA 59.202 45.455 0.00 0.00 34.66 2.01
1935 2065 2.400399 CGCGAGGAAAACACTCAGTAA 58.600 47.619 0.00 0.00 34.66 2.24
1936 2066 1.933500 GCGCGAGGAAAACACTCAGTA 60.934 52.381 12.10 0.00 34.66 2.74
1937 2067 1.222115 GCGCGAGGAAAACACTCAGT 61.222 55.000 12.10 0.00 34.66 3.41
1938 2068 1.493311 GCGCGAGGAAAACACTCAG 59.507 57.895 12.10 0.00 34.66 3.35
1939 2069 2.307309 CGCGCGAGGAAAACACTCA 61.307 57.895 28.94 0.00 34.66 3.41
1940 2070 2.470286 CGCGCGAGGAAAACACTC 59.530 61.111 28.94 0.00 0.00 3.51
1941 2071 3.712881 GCGCGCGAGGAAAACACT 61.713 61.111 37.18 0.00 0.00 3.55
1942 2072 4.007940 TGCGCGCGAGGAAAACAC 62.008 61.111 37.18 13.06 0.00 3.32
1943 2073 4.007940 GTGCGCGCGAGGAAAACA 62.008 61.111 37.18 17.58 0.00 2.83
1944 2074 4.736631 GGTGCGCGCGAGGAAAAC 62.737 66.667 37.18 19.27 0.00 2.43
1979 2109 2.640581 AAATGGGCCGGGCATAGGAC 62.641 60.000 30.95 11.71 35.57 3.85
1980 2110 2.391130 AAATGGGCCGGGCATAGGA 61.391 57.895 30.95 7.87 0.00 2.94
1981 2111 2.198426 AAATGGGCCGGGCATAGG 59.802 61.111 30.95 0.00 0.00 2.57
1982 2112 2.859981 GCAAATGGGCCGGGCATAG 61.860 63.158 30.95 14.90 0.00 2.23
1983 2113 2.837291 GCAAATGGGCCGGGCATA 60.837 61.111 30.95 18.53 0.00 3.14
1984 2114 4.783501 AGCAAATGGGCCGGGCAT 62.784 61.111 30.95 17.91 0.00 4.40
1986 2116 2.746412 AAAAAGCAAATGGGCCGGGC 62.746 55.000 22.00 22.00 0.00 6.13
1987 2117 1.374568 AAAAAGCAAATGGGCCGGG 59.625 52.632 2.18 0.00 0.00 5.73
2018 2148 3.376859 TCTCACAGTGTGAACGCATTTTT 59.623 39.130 25.41 0.00 42.26 1.94
2019 2149 2.942376 TCTCACAGTGTGAACGCATTTT 59.058 40.909 25.41 0.00 42.26 1.82
2020 2150 2.560504 TCTCACAGTGTGAACGCATTT 58.439 42.857 25.41 0.00 42.26 2.32
2021 2151 2.238942 TCTCACAGTGTGAACGCATT 57.761 45.000 25.41 0.00 42.26 3.56
2022 2152 2.462456 ATCTCACAGTGTGAACGCAT 57.538 45.000 25.41 12.74 42.26 4.73
2023 2153 2.238942 AATCTCACAGTGTGAACGCA 57.761 45.000 25.41 11.11 42.26 5.24
2024 2154 2.543848 TCAAATCTCACAGTGTGAACGC 59.456 45.455 25.41 0.00 42.26 4.84
2025 2155 4.518217 GTTCAAATCTCACAGTGTGAACG 58.482 43.478 25.41 15.58 42.26 3.95
2026 2156 4.552767 CGGTTCAAATCTCACAGTGTGAAC 60.553 45.833 25.41 17.99 42.26 3.18
2027 2157 3.559655 CGGTTCAAATCTCACAGTGTGAA 59.440 43.478 25.41 16.69 42.26 3.18
2028 2158 3.130633 CGGTTCAAATCTCACAGTGTGA 58.869 45.455 24.09 24.09 40.50 3.58
2029 2159 2.349817 GCGGTTCAAATCTCACAGTGTG 60.350 50.000 17.53 17.53 34.45 3.82
2030 2160 1.873591 GCGGTTCAAATCTCACAGTGT 59.126 47.619 0.00 0.00 0.00 3.55
2031 2161 1.872952 TGCGGTTCAAATCTCACAGTG 59.127 47.619 0.00 0.00 0.00 3.66
2032 2162 2.254546 TGCGGTTCAAATCTCACAGT 57.745 45.000 0.00 0.00 0.00 3.55
2033 2163 3.300009 GTTTGCGGTTCAAATCTCACAG 58.700 45.455 0.00 0.00 45.43 3.66
2034 2164 2.034053 GGTTTGCGGTTCAAATCTCACA 59.966 45.455 0.00 0.00 45.43 3.58
2035 2165 2.661594 GGTTTGCGGTTCAAATCTCAC 58.338 47.619 0.00 0.00 45.43 3.51
2039 2169 2.351738 CCAGAGGTTTGCGGTTCAAATC 60.352 50.000 0.00 0.00 45.43 2.17
2040 2170 1.613437 CCAGAGGTTTGCGGTTCAAAT 59.387 47.619 0.00 0.00 45.43 2.32
2041 2171 1.028905 CCAGAGGTTTGCGGTTCAAA 58.971 50.000 0.00 0.00 42.01 2.69
2042 2172 0.106918 ACCAGAGGTTTGCGGTTCAA 60.107 50.000 0.00 0.00 27.29 2.69
2043 2173 0.534203 GACCAGAGGTTTGCGGTTCA 60.534 55.000 0.00 0.00 35.25 3.18
2044 2174 0.250338 AGACCAGAGGTTTGCGGTTC 60.250 55.000 0.00 0.00 35.25 3.62
2045 2175 1.002087 CTAGACCAGAGGTTTGCGGTT 59.998 52.381 0.00 0.00 35.25 4.44
2046 2176 0.608640 CTAGACCAGAGGTTTGCGGT 59.391 55.000 0.00 0.00 35.25 5.68
2047 2177 0.608640 ACTAGACCAGAGGTTTGCGG 59.391 55.000 0.00 0.00 35.25 5.69
2048 2178 2.338500 GAACTAGACCAGAGGTTTGCG 58.662 52.381 0.00 0.00 35.25 4.85
2049 2179 2.038557 TGGAACTAGACCAGAGGTTTGC 59.961 50.000 0.00 0.00 35.25 3.68
2050 2180 4.351874 TTGGAACTAGACCAGAGGTTTG 57.648 45.455 0.00 0.00 38.70 2.93
2051 2181 4.165372 TGTTTGGAACTAGACCAGAGGTTT 59.835 41.667 0.00 0.00 38.70 3.27
2052 2182 3.714798 TGTTTGGAACTAGACCAGAGGTT 59.285 43.478 0.00 0.00 38.70 3.50
2053 2183 3.314693 TGTTTGGAACTAGACCAGAGGT 58.685 45.455 0.00 0.00 38.70 3.85
2054 2184 3.307059 CCTGTTTGGAACTAGACCAGAGG 60.307 52.174 0.00 8.46 38.70 3.69
2055 2185 3.578716 TCCTGTTTGGAACTAGACCAGAG 59.421 47.826 0.00 3.76 42.94 3.35
2056 2186 3.583228 TCCTGTTTGGAACTAGACCAGA 58.417 45.455 0.00 0.00 42.94 3.86
2099 2229 5.212745 TCCCAGTTGGTTATTCCTGTTTTT 58.787 37.500 0.00 0.00 37.07 1.94
2100 2230 4.810345 TCCCAGTTGGTTATTCCTGTTTT 58.190 39.130 0.00 0.00 37.07 2.43
2101 2231 4.105697 TCTCCCAGTTGGTTATTCCTGTTT 59.894 41.667 0.00 0.00 37.07 2.83
2102 2232 3.655777 TCTCCCAGTTGGTTATTCCTGTT 59.344 43.478 0.00 0.00 37.07 3.16
2103 2233 3.256704 TCTCCCAGTTGGTTATTCCTGT 58.743 45.455 0.00 0.00 37.07 4.00
2104 2234 3.878778 CTCTCCCAGTTGGTTATTCCTG 58.121 50.000 0.00 0.00 37.07 3.86
2105 2235 2.239907 GCTCTCCCAGTTGGTTATTCCT 59.760 50.000 0.00 0.00 37.07 3.36
2106 2236 2.239907 AGCTCTCCCAGTTGGTTATTCC 59.760 50.000 0.00 0.00 34.77 3.01
2107 2237 3.055094 TGAGCTCTCCCAGTTGGTTATTC 60.055 47.826 16.19 0.00 34.77 1.75
2108 2238 2.912956 TGAGCTCTCCCAGTTGGTTATT 59.087 45.455 16.19 0.00 34.77 1.40
2109 2239 2.237392 GTGAGCTCTCCCAGTTGGTTAT 59.763 50.000 16.19 0.00 34.77 1.89
2110 2240 1.623811 GTGAGCTCTCCCAGTTGGTTA 59.376 52.381 16.19 0.00 34.77 2.85
2111 2241 0.398318 GTGAGCTCTCCCAGTTGGTT 59.602 55.000 16.19 0.00 34.77 3.67
2112 2242 1.484444 GGTGAGCTCTCCCAGTTGGT 61.484 60.000 21.90 0.00 34.77 3.67
2113 2243 1.197430 AGGTGAGCTCTCCCAGTTGG 61.197 60.000 27.22 0.00 0.00 3.77
2114 2244 0.036577 CAGGTGAGCTCTCCCAGTTG 60.037 60.000 27.22 16.88 0.00 3.16
2115 2245 1.835927 GCAGGTGAGCTCTCCCAGTT 61.836 60.000 27.22 9.53 0.00 3.16
2116 2246 2.289532 GCAGGTGAGCTCTCCCAGT 61.290 63.158 27.22 9.87 0.00 4.00
2117 2247 1.988956 AGCAGGTGAGCTCTCCCAG 60.989 63.158 27.22 21.41 42.18 4.45
2118 2248 2.121385 AGCAGGTGAGCTCTCCCA 59.879 61.111 27.22 0.00 42.18 4.37
2119 2249 2.289532 ACAGCAGGTGAGCTCTCCC 61.290 63.158 27.22 20.18 44.54 4.30
2120 2250 3.386592 ACAGCAGGTGAGCTCTCC 58.613 61.111 24.39 24.39 44.54 3.71
2129 2259 2.289694 CCAAGTAACTAGCACAGCAGGT 60.290 50.000 0.00 0.00 0.00 4.00
2130 2260 2.289694 ACCAAGTAACTAGCACAGCAGG 60.290 50.000 0.00 0.00 0.00 4.85
2131 2261 3.045601 ACCAAGTAACTAGCACAGCAG 57.954 47.619 0.00 0.00 0.00 4.24
2132 2262 3.485463 AACCAAGTAACTAGCACAGCA 57.515 42.857 0.00 0.00 0.00 4.41
2133 2263 4.830826 AAAACCAAGTAACTAGCACAGC 57.169 40.909 0.00 0.00 0.00 4.40
2153 2283 8.756864 GTTTTATCCTTACATTTGACGCAAAAA 58.243 29.630 8.65 0.00 36.90 1.94
2154 2284 7.921214 TGTTTTATCCTTACATTTGACGCAAAA 59.079 29.630 8.65 0.00 36.90 2.44
2155 2285 7.426410 TGTTTTATCCTTACATTTGACGCAAA 58.574 30.769 7.32 7.32 37.75 3.68
2156 2286 6.971602 TGTTTTATCCTTACATTTGACGCAA 58.028 32.000 0.00 0.00 0.00 4.85
2157 2287 6.561737 TGTTTTATCCTTACATTTGACGCA 57.438 33.333 0.00 0.00 0.00 5.24
2158 2288 7.861176 TTTGTTTTATCCTTACATTTGACGC 57.139 32.000 0.00 0.00 0.00 5.19
2159 2289 8.372521 GCATTTGTTTTATCCTTACATTTGACG 58.627 33.333 0.00 0.00 0.00 4.35
2160 2290 9.202273 TGCATTTGTTTTATCCTTACATTTGAC 57.798 29.630 0.00 0.00 0.00 3.18
2161 2291 9.421806 CTGCATTTGTTTTATCCTTACATTTGA 57.578 29.630 0.00 0.00 0.00 2.69
2162 2292 8.170553 GCTGCATTTGTTTTATCCTTACATTTG 58.829 33.333 0.00 0.00 0.00 2.32
2163 2293 7.063308 CGCTGCATTTGTTTTATCCTTACATTT 59.937 33.333 0.00 0.00 0.00 2.32
2164 2294 6.531240 CGCTGCATTTGTTTTATCCTTACATT 59.469 34.615 0.00 0.00 0.00 2.71
2165 2295 6.035843 CGCTGCATTTGTTTTATCCTTACAT 58.964 36.000 0.00 0.00 0.00 2.29
2166 2296 5.048364 ACGCTGCATTTGTTTTATCCTTACA 60.048 36.000 0.00 0.00 0.00 2.41
2167 2297 5.399013 ACGCTGCATTTGTTTTATCCTTAC 58.601 37.500 0.00 0.00 0.00 2.34
2168 2298 5.414454 AGACGCTGCATTTGTTTTATCCTTA 59.586 36.000 0.00 0.00 0.00 2.69
2169 2299 4.218417 AGACGCTGCATTTGTTTTATCCTT 59.782 37.500 0.00 0.00 0.00 3.36
2170 2300 3.758554 AGACGCTGCATTTGTTTTATCCT 59.241 39.130 0.00 0.00 0.00 3.24
2171 2301 4.096732 AGACGCTGCATTTGTTTTATCC 57.903 40.909 0.00 0.00 0.00 2.59
2172 2302 7.740519 AATAAGACGCTGCATTTGTTTTATC 57.259 32.000 0.00 0.00 0.00 1.75
2173 2303 8.028938 AGAAATAAGACGCTGCATTTGTTTTAT 58.971 29.630 0.00 0.00 0.00 1.40
2174 2304 7.367285 AGAAATAAGACGCTGCATTTGTTTTA 58.633 30.769 0.00 0.00 0.00 1.52
2175 2305 6.215845 AGAAATAAGACGCTGCATTTGTTTT 58.784 32.000 0.00 0.00 0.00 2.43
2176 2306 5.772521 AGAAATAAGACGCTGCATTTGTTT 58.227 33.333 0.00 1.73 0.00 2.83
2177 2307 5.376854 AGAAATAAGACGCTGCATTTGTT 57.623 34.783 0.00 0.00 0.00 2.83
2178 2308 5.376854 AAGAAATAAGACGCTGCATTTGT 57.623 34.783 0.00 0.00 0.00 2.83
2179 2309 6.695292 AAAAGAAATAAGACGCTGCATTTG 57.305 33.333 0.00 0.00 0.00 2.32
2205 2335 2.442212 AAACCGGCCAAATAAAACCG 57.558 45.000 0.00 0.00 45.21 4.44
2206 2336 3.991773 GAGAAAACCGGCCAAATAAAACC 59.008 43.478 0.00 0.00 0.00 3.27
2207 2337 4.684242 CAGAGAAAACCGGCCAAATAAAAC 59.316 41.667 0.00 0.00 0.00 2.43
2208 2338 4.262249 CCAGAGAAAACCGGCCAAATAAAA 60.262 41.667 0.00 0.00 0.00 1.52
2209 2339 3.257127 CCAGAGAAAACCGGCCAAATAAA 59.743 43.478 0.00 0.00 0.00 1.40
2210 2340 2.823154 CCAGAGAAAACCGGCCAAATAA 59.177 45.455 0.00 0.00 0.00 1.40
2211 2341 2.040545 TCCAGAGAAAACCGGCCAAATA 59.959 45.455 0.00 0.00 0.00 1.40
2212 2342 1.203001 TCCAGAGAAAACCGGCCAAAT 60.203 47.619 0.00 0.00 0.00 2.32
2213 2343 0.183971 TCCAGAGAAAACCGGCCAAA 59.816 50.000 0.00 0.00 0.00 3.28
2214 2344 0.404040 ATCCAGAGAAAACCGGCCAA 59.596 50.000 0.00 0.00 0.00 4.52
2215 2345 0.404040 AATCCAGAGAAAACCGGCCA 59.596 50.000 0.00 0.00 0.00 5.36
2216 2346 1.545841 AAATCCAGAGAAAACCGGCC 58.454 50.000 0.00 0.00 0.00 6.13
2217 2347 3.660501 AAAAATCCAGAGAAAACCGGC 57.339 42.857 0.00 0.00 0.00 6.13
2246 2376 9.996554 AAGGAAGAAAGAAAGACAAAAGAAAAA 57.003 25.926 0.00 0.00 0.00 1.94
2247 2377 9.996554 AAAGGAAGAAAGAAAGACAAAAGAAAA 57.003 25.926 0.00 0.00 0.00 2.29
2248 2378 9.423061 CAAAGGAAGAAAGAAAGACAAAAGAAA 57.577 29.630 0.00 0.00 0.00 2.52
2249 2379 7.545615 GCAAAGGAAGAAAGAAAGACAAAAGAA 59.454 33.333 0.00 0.00 0.00 2.52
2250 2380 7.035612 GCAAAGGAAGAAAGAAAGACAAAAGA 58.964 34.615 0.00 0.00 0.00 2.52
2251 2381 7.038048 AGCAAAGGAAGAAAGAAAGACAAAAG 58.962 34.615 0.00 0.00 0.00 2.27
2252 2382 6.935167 AGCAAAGGAAGAAAGAAAGACAAAA 58.065 32.000 0.00 0.00 0.00 2.44
2253 2383 6.530019 AGCAAAGGAAGAAAGAAAGACAAA 57.470 33.333 0.00 0.00 0.00 2.83
2254 2384 6.530019 AAGCAAAGGAAGAAAGAAAGACAA 57.470 33.333 0.00 0.00 0.00 3.18
2255 2385 7.639113 TTAAGCAAAGGAAGAAAGAAAGACA 57.361 32.000 0.00 0.00 0.00 3.41
2256 2386 9.534565 AATTTAAGCAAAGGAAGAAAGAAAGAC 57.465 29.630 0.00 0.00 0.00 3.01
2259 2389 8.611757 GCAAATTTAAGCAAAGGAAGAAAGAAA 58.388 29.630 0.00 0.00 0.00 2.52
2260 2390 7.768120 TGCAAATTTAAGCAAAGGAAGAAAGAA 59.232 29.630 0.96 0.00 37.90 2.52
2261 2391 7.271511 TGCAAATTTAAGCAAAGGAAGAAAGA 58.728 30.769 0.96 0.00 37.90 2.52
2262 2392 7.481275 TGCAAATTTAAGCAAAGGAAGAAAG 57.519 32.000 0.96 0.00 37.90 2.62
2263 2393 7.856145 TTGCAAATTTAAGCAAAGGAAGAAA 57.144 28.000 12.16 0.00 46.65 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.