>input_sequence_84246
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----------------------------------------ATGTCGCTTCTGCACTGCTTCCTGAAGCCGTCGAGGATGA
GCCTGCAGCGGTGCGTCGCCGGCGACGACATGACGGCGGACGAGTTCAAGGAGTGGATCCGGCGGTTCGACGCGGACCAG
GACGGGCGCATCAGCCGGGACGAGCTGCGGCGCGCCATGCGGGCGCTGCGCGTGCGGTTCACGCGGCGGAGGAGCAGGAG
CGGCATCAGCTACGCCGACGCGGACGGCGACGGGTACATCGACGACAGCGAGATCGACGGCCTCGTCGAGTTCGCGCGGA
CCAACCTCGGCCTCCGGATCGTCGCCTGCTAG------------------------------------------------
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>chr5D_1_TraesCS5D01G246100
TTCTTTGTCTCTGCACCTGTTGTAAACATAA------TTCCAGATTGCTAGATTCGATCAGTAGGGGTTGATGAATAGTG
AGCTGATAATGGAATTTTTCTTTGATGGAGTGGCCATATAGGCTATAGCTCTGTTTGTAG--------------------
------TACATATCTTTGTACCTGTTGTAAGTCGGAGAAGAGCCTGGAAGTTATGTTTCCGACATA-TACGTTTTCATGT
TTTTTCAAAAACCGCAGTGGG-TTTTTCAGTTTTGGGGGTCCTGTGCGGATGTGCCTGGACTTTGATTGTTCG-TTGTGG
CGCGGATGTGTGTAAGACGCTTCATTTTCTCGAATGAAATTGGTGGGTTCCTTTCCTCGAAAAATAA-GAAGAATCTTCG
ACACGCAATGATACA-GCCTAGACGCATGGTCCAGGAACCCAGTTCCATCTTTTGCATGGTTATCAGGTCAGATTTTTCT
GAAACGCAACACTCAGCTGCACCTCACAGATCCGCATCGGCATCTTACGTGCCGGTC-TTATTTGTTTGCCTTTGCACGA
TTCCGGGCTATCCATGTCGCCTATCTGTAGCCATTTCCTGCCCACTCCACGTGCCACTGATTCTTGATTCCTTCAACGAC
CGTTCATTTATATGGTC-----TAGCAATATTATTCCAACCGATTTCGTATACGTCCACATATATTCTTCGTTCCACAAA
TTCTCGAGATGGTT-------ATCTGTCTGCGTCCGTTATTTACTTGCACAACAAAATCACCGGAGCCATTCATTTGGGT
GTGTCAGTTTACGTAA------------------------------CTGTAAACTCTCCGTGTTTTAATCCGAATCGGAA
TTTCGAGGGGGTGGCAGGCATTAGATAGATAGGTACGCATATATCCATCTTGTCATATCCATGTCTGATGTCTGTTATTT
CTTCCCACGGATTCGTGGAGCCAGGCCGCGGATATATAAGCGCCACCAAGGCAGTGCGGACAGGCTCACCCACTCGGCCG
GACACATATTAAGTGAAAGCACATTCGTAGTTTGGCGCGAATGTCGCTTCTGCACTGCTTCCTGAAGCCGTCGAGGATGA
GCCTGCAGCGGTGCGTCGCCGGCGACGACATGACGGCGGACGAGTTCAAGGAGTGGATCCGGCGGTTCGACGCGGACCAG
GACGGGCGCATCAGCCGGGACGAGCTGCGGCGCGCCATGCGGGCGCTGCGCGTGCGGTTCACGCGGCGGAGGAGCAGGAG
CGGCATCAGCTACGCCGACGCGGACGGCGACGGGTACATCGACGACAGCGAGATCGACGGCCTCGTCGAGTTCGCGCGGA
CCAACCTCGGCCTCCGGATCGTCGCCTGCTAGAAACGGAGCACATCGACTGCTCCAGTCGGGTCGAGCAGCTACGTG---
---CTCGACCTACGTGATGGCGCGCACGAGATGGCCGTTGTAG----CTAGAATAAGGCCATCTCAGATGCGGAAAGTGA
ACCTTATGTTCTCTGTCTTTTGTTTTTCTTTTCATTTTCTCTCTAGCTGCAGCCCGTGCACTTGAATAATAGAAGGTGCA
TGCCTGGCTTAGCGCAAGTAAGGGGCAGTGT----TGTAGTGCTCGCTTTATGGAATGGAATA-----------ATATGT
ATG-TTGATCTAACGATCTTCTTGT-------------------TTTTCTTCCCTCAA-TGTACAGTATATTTGTCCAAA
CTAGCAGA---AAAAAGGAGTAGGGCGTTTTGGAGGTCCAGCTCCATGGAGGACATGATTTTGAAAAATTCAAAATTCAA
ACTTTTCAGTTTCAATAAATTCTGAAAATAATAATATATGTATACAAGGATGAAATGTATACGTGCAAAATTTCATGATC
AAATACCTTGAATTGCGGGCAAATAAAAATCATGGAGTTTGAGAATGAGCAGTGCATGCATGTACATGAGTATTATACTA
GCCCACGTGATCCCCAAATAATATCGGTCGCCTACACGCACTCGCTAGCGGGCCGGCTCAAGCTTTACTGAGTGTTTTCC
TCGCGCGCACCGCCCTCCTGCCCCCCGGGTCCTATGCCCGGCCCATTTGCTTTTTTTTTAAACTTCAAAAAATGCGTTCA
CACTGTGAGATTTGAACCGCAAACCTCTGGTCTAGTTCCAAACAGGAATAACCATTTTTTCTCAAAAAAAAAACAGGAAT
AACCAACTGGGAGAGCTCACCTGCTGTGCTAGTTACTTGGTTTTTTTGCGTCAAATGTAAGGATAAAACAAATGCAGCGT
CTTATTTCTTTTTTCGGTTTTATTTGGCCGGTTTTCTCTGGATTTTTTCCCTTATTTTTTCTTTTGTCTTTCTTTCTTCC
TTTGCTTAAATTTGCAAAATAAAAATAAAATCATGAATCGT
>chr5B_6
-----TGTCTCTGTACGTGTTGTAAACATAATGTAGATTCCCGATTGAT--ATTCGCTCAGTAGGGGTTAATGAATAGTG
AGCTGATAATGGAATTTTTCTTGGATGGAGTGGCCATATAGGCTATAGCTTTGTTTGTAG--------------------
------TA----TCTTTGTACCTGTTGTAAATAGGAGAAGAGCCTGGAAGTTATGGTTCTGATATGCTACGTTTTCATG-
TTTTTCAAAAACCGCAGTGTGTTTTTTCAGCTTTGGGGGTCCTGTGCGGATGTGCCTGGACTT-GATTGTTCGTTTGTGG
CGTGGATATGTATAAGTCGCTTCAATTTCTCGAATGAAATTGGTAGGTTCCTTTCCTCGAAAAACAA-GAAGAATCTTCG
ACACGCAATGATACGTGCCTAGACGCATTGTCCAGGAATCCAGTTCCATCTTTTGCACAGTTATCAGGTCAGATTTTTCT
GAAACGCAACACTCAGGTGCACCTCACAGATCCGCATC------TTATGTGCCGGTA-TTATTTGTTTGCCTTTGCACGA
TTCCGGGCTATCCATGTCGCCTATCTGTAGCCGTTTCCTGCCCACTCCACGTGCCACTGATTCTTGATTCCTTCAACGAC
CGTTCATTTATATGGTC-----TAGCAATATTATTCCAACCGATTTCGTATACGT--ACATATATTCTTCGTTCCACTAA
TTCTCGAGATGGTT-------ATCTGTCTGCGTCCGTTATTTACTTGCACAACAAAATCA-------------TTTGGGT
GTGTCAGTAATGT--A------------------------------CTGTAAACTCTCCGTGTTTTAATCCGAATCGGAA
TTTAGAGGGGGTGTCAGGCATTAGATAGATAGGGACGCATATGTCCATCTCGTCACATCCATGTCTA-------TTATTT
CTTCCCACGGATTCGTGGAGCCAGGCCGCGGATATATAAGCGCCACCAAGGCAATGCAGAGAGGCTCACCCACTCGGTCC
GACACATATTAAGTGAAAGCACATTCGTAGTTTGGCGCCAATGTCACTTCTGCACTGCTTCCTGAAGCCCTCCAGGATGA
GCCTGCAGCGGTGCGTCGCCGGCGACGACATGACGGCGGACGAGTTCAAGGAGTGGATCCGGCGGTTCGACGCGGACCAG
GACGGGCGCATCAGCCGCGACGAGCTGCGGCGCGCCATGCGGGCGCTGCGCGTGCGGTTCACGCGGCGGAGGAGCAGGAG
CGGCATCAGCTACGCCGACGCCGACGGCGACGGGTACATCGACGACAGCGAGATCGACGGCCTCGTCGAGTTCGCGCGGA
CCAGCCTCGGCCTCCGGATCGTCGCCTGCTAGAAACGGAGCAGATCGACTACTACAGGCCAGTAC-GTAGCTACGTCTAC
GTACTCGATCTACCTGATGGCGCGCACGAGATGACCGTTGTATGTAACTGGAATAAGGTCATCTCAGATGCGAAAAGTGA
ACCTTATGTTCTCTGAC--------TTCTTTTCATTTTCTCTCTAGCTGCAGCCCGTGCACTGAAATAATAGAAGGTGCA
TGCCTGGCTTAGCGCAAGTAAGGGGTAGTGTTGTATGTAGTACTCGCTTTATGCAATCGCCTGCATGGAATAATATATGT
ATG-TTGATCTAATGATGCCTGGCTTAGCGCAAGTAAGGAGTTGTTTTCTTCCGTCAA-TTTACAGTATATTTTGTCCAC
TGGCAGAA---AAAAAGGAGCAGGGTGTTTTGGAGGCCCAGCCCCATGGAGGCCATAATTTTGGAAAATTCAAACCTCGA
ACTTTTCAGTTCCAATAAATTCTGAAAA----------------------------------------------------
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>chr5A_6
-----TGTCTCTGTACCTGTTGTAAACATAATATAGATTCCAGATTGCTAGATTCGCTCAGTAGGGGTTGATGAATAGTG
AGCTGATAATGGAATTTTTCTTTGATGGAGTGGCCATGTAGGCTATAACTTTGTTTGTAGAGTACTACTCCCTCAGTGGG
GTTTAGTA----TCTTTGTACCTGTTGTAAGTTGGAGAAGAGCCTGGAAGTTATGTTTATGATATGCTACGTTTTCATG-
TTTTTCAGAAACTGCAGTGGG-GTTTTCAGTTTTGGGGGTCCTGTGCGGATGTGCCTGGACTTTGATTGTTCATG-GTGG
CGCGGATGTATATAAGACGCTTCAATTTCGCGAATGAAATTGGTGGGTTCCTTTCCTCGAAAAAACCCGAAGAATCTTCG
ACACGATATGATACATGCCTAGACGCATGGTC--GGAATCCAGTTCCATCTTTTGCATGGTTATCAGGTCAGATTTTTGT
GTAACGCAACACTCAGCTGCACCTCACAGATCCGCATC------TTATGTGCCGGTAGTTATTTGTTTGCCTTTGCACGA
TTCTGGGCTATC-------------TGTAGCCATTTCCTGCCCACTCCACGTGCCACTGATTCTTGATTCCTTCAACGAC
CGTTCAATTATATGATCTACAGTAGCAATATTATTCCAACCGATTTCGTATGCGT--CCATATATTCTTCGCTCCACTAA
TTCTCGAGATGGTTATCTCTTATCTGTCTGCGTCCATCATCTACTTGCACAACAAAATCACCGGAGCTAGCTAGTCGTTG
CTAACTTATCTGTCAACATAGCATTTGGGCGTAAGTTTATGTACTGCTGTAAACTCTCCGTGTTTTAATCCGAATCCGAA
TTTAGAGGGGGTGGCAGGCATTAGATAGATAGGGACGCATATATCCATCTCGTCATATCCATGTCCA-------TTATTT
CTTCCCACGGATCCGTGGAGCCGGTCCGCGGATATATAAGCGCCACCAAGGCAGTGCAGACAGGCTCACCCACTCGGTCC
GACACATATTAAGTGGAAGCACAATAGCAGTTTGGCGCGAATGTCGCTTCTGCACTGCTTCCTGAAGCCGTCGAGGATGA
GCCTGCAGCGGTGCGTCGCCGGCGACGACATGACGGCGGACGACTTCAAGGAGTGGATCCGGCGGTTCGACGCGGACCGG
GACGGGCGCATCAGCCGCGACGAGCTGCGGCGCGCCATGCGGGCGCTGCGCGTGCGGTTCACGCGGCGGAGGAGCAGGAG
CGGCATCACCTACGCCGACGCCGACGGCGACGGGTACATCGACGACAGCGAGATCGACGGCCTCGTCGAGTTCGCGCGCA
CCAGCCTCGGCCTCCGGATCGTCGCCTGCTAGAAACGGAGCAGATCGGCTCCTCCAGTCCGGTCCAGTAGCTACGTG---
---CTCGACCTACGTGATGGCGCGCACGAGATGGCCGTTGTAG----CTAGAATAAGGCCGTCTCAGATGCGGAAAGTGA
ACCTTATT---TCTGTC--------TTCTTTTCTTTTTCTCTCGAGCTGCAGCCCGTGCACGGAAATAATAGAAGGTGCA
GGCCTGGCTTAGCGCAAGTAAGGAGTAGTGC----TGTAGTACTCGCTTTATGCAGTCGCATGCATGGAATAATATGTGT
ATGTTTGATCTAATGTACAGTTTTT-------------------TTTTTTTGAGAAACTTGTACAGTATTATTTTCTCCA
AATTATAGCAGAAAAAGGAGTAGGGCGTTTTGGAGGCCCAGCTCCATGGAGGCCATAATTTTGGAAAATTCAAAATTCAA
ACTTTTTAGTTTCAATAAATTCTGAAAATAATAATATACATATACGTGGATGAAATGTATATGTGAAAAATTCAATGATC
AAATACCTTGAATTGCGAGTTA--AAAAATGATGGAGTTTGAGAATGAACAGTATATGCGATG-----------------
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>SNPs
SSSSS--------S------------------------------------------S-----------------------
--------------------------------------------------S-----------------------------
--------SSSS--------------------S--------------------------S--S--S-------------S
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-----------S------------S---------------------------------------S---------------
--------------------------------------S-----------------------------------------
--------------------------------------SSSSSS---S--------S-----------------------
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-------------------------------------------------------SS--------------------S--
-------------------------------------------------------------------S-SSS--------
---------SSSSS------------------------------------------------------------------
---S-----------------------------S----------------S---------------SSSSSSSS------
---------------------------------------------------------S-------------------S-S
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-----------------S--------------------------------------------------------------
---------------------S----------------------------------------------------------
---S--------------------------------------S-------S--------S----S--S------------
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-----------------SSSSSSSS-------------------------------------SS----------------
-------------------------S---------------S-----------S---S-S--S-----------------
-------------S----SSS--S-----------------------------S-------------------S---S--
SSSSSSS-----------------------------S---------------S---S------S----------------
--------------------------------------SS-----SS--------------S---S------SS------
-----------------S-SS-SS------S-----------------S----SS----SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_519
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-------------------CACCTCACAGATCCGCATCG-----------------------------------------
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>reverse_2244
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---CAACTGGGAGAGCTCACCTG---------------------------------------------------------
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