Multiple sequence alignment - TraesCS5D01G242300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G242300 chr5D 100.000 2640 0 0 1 2640 350981930 350979291 0.000000e+00 4876.0
1 TraesCS5D01G242300 chr5D 95.046 545 27 0 1036 1580 350731472 350730928 0.000000e+00 857.0
2 TraesCS5D01G242300 chr5D 88.703 239 25 2 2280 2517 422457932 422457695 9.240000e-75 291.0
3 TraesCS5D01G242300 chr5D 89.542 153 12 4 259 408 505367002 505367153 9.640000e-45 191.0
4 TraesCS5D01G242300 chr5B 96.698 1181 31 5 405 1580 411786893 411785716 0.000000e+00 1958.0
5 TraesCS5D01G242300 chr5B 93.873 408 24 1 1 408 411787391 411786985 4.830000e-172 614.0
6 TraesCS5D01G242300 chr5B 97.143 35 1 0 1661 1695 411784670 411784636 2.840000e-05 60.2
7 TraesCS5D01G242300 chr5A 88.705 1514 79 31 609 2069 451393537 451392063 0.000000e+00 1764.0
8 TraesCS5D01G242300 chr5A 91.979 187 8 3 2051 2231 451391030 451390845 3.370000e-64 255.0
9 TraesCS5D01G242300 chr5A 89.899 99 7 2 384 480 436355616 436355519 9.920000e-25 124.0
10 TraesCS5D01G242300 chr5A 100.000 29 0 0 2243 2271 451390815 451390787 1.000000e-03 54.7
11 TraesCS5D01G242300 chr6B 90.043 462 41 4 1120 1577 715687775 715688235 6.290000e-166 593.0
12 TraesCS5D01G242300 chr6B 93.617 47 3 0 497 543 485460469 485460515 1.310000e-08 71.3
13 TraesCS5D01G242300 chr6D 89.177 462 45 4 1120 1577 469552843 469553303 2.950000e-159 571.0
14 TraesCS5D01G242300 chr6D 90.217 92 7 2 384 474 354989249 354989339 4.620000e-23 119.0
15 TraesCS5D01G242300 chr6A 88.745 462 47 4 1120 1577 614598284 614598744 6.380000e-156 560.0
16 TraesCS5D01G242300 chr6A 81.461 178 17 7 384 546 34032144 34032320 5.930000e-27 132.0
17 TraesCS5D01G242300 chr2A 93.664 363 22 1 2278 2640 69218194 69217833 2.310000e-150 542.0
18 TraesCS5D01G242300 chr2A 85.621 153 10 5 405 545 32534619 32534771 1.640000e-32 150.0
19 TraesCS5D01G242300 chr7D 89.011 364 29 3 2277 2640 463273480 463273832 8.670000e-120 440.0
20 TraesCS5D01G242300 chr7D 90.604 149 11 3 261 407 496169092 496169239 7.460000e-46 195.0
21 TraesCS5D01G242300 chr7D 94.737 76 4 0 405 480 563606461 563606386 4.620000e-23 119.0
22 TraesCS5D01G242300 chr2B 87.838 222 23 3 2289 2508 192443011 192443230 9.380000e-65 257.0
23 TraesCS5D01G242300 chr3D 91.447 152 10 3 259 408 428606003 428605853 3.440000e-49 206.0
24 TraesCS5D01G242300 chr3D 88.679 159 13 5 252 408 160523441 160523286 3.470000e-44 189.0
25 TraesCS5D01G242300 chr3D 89.899 99 7 3 384 480 12162309 12162212 9.920000e-25 124.0
26 TraesCS5D01G242300 chr1D 90.728 151 8 5 262 408 97311021 97311169 2.070000e-46 196.0
27 TraesCS5D01G242300 chr2D 90.000 150 12 3 261 408 650492539 650492391 9.640000e-45 191.0
28 TraesCS5D01G242300 chr2D 88.028 142 12 3 405 543 97227501 97227640 2.100000e-36 163.0
29 TraesCS5D01G242300 chr2D 89.899 99 7 2 384 480 582488060 582488157 9.920000e-25 124.0
30 TraesCS5D01G242300 chr4B 89.404 151 13 3 260 408 662780297 662780446 1.250000e-43 187.0
31 TraesCS5D01G242300 chr7A 88.889 153 13 4 259 408 64474711 64474862 4.490000e-43 185.0
32 TraesCS5D01G242300 chr3A 98.684 76 1 0 405 480 589193969 589193894 4.580000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G242300 chr5D 350979291 350981930 2639 True 4876.000000 4876 100.000000 1 2640 1 chr5D.!!$R2 2639
1 TraesCS5D01G242300 chr5D 350730928 350731472 544 True 857.000000 857 95.046000 1036 1580 1 chr5D.!!$R1 544
2 TraesCS5D01G242300 chr5B 411784636 411787391 2755 True 877.400000 1958 95.904667 1 1695 3 chr5B.!!$R1 1694
3 TraesCS5D01G242300 chr5A 451390787 451393537 2750 True 691.233333 1764 93.561333 609 2271 3 chr5A.!!$R2 1662

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
535 630 0.536006 GATCCCGGGCTCAGAATTGG 60.536 60.0 19.59 0.0 0.00 3.16 F
1051 1174 0.036010 AAAGATGCTGAGGTCCACCG 60.036 55.0 0.00 0.0 42.08 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1605 1757 0.035036 TCATTTTGGGTCCGCGTGTA 59.965 50.0 4.92 0.0 0.0 2.90 R
2035 3153 0.035152 CAACTAGCCACATCTGCCCA 60.035 55.0 0.00 0.0 0.0 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.036958 TGGTGTTGTTCACTGACAGG 57.963 50.000 7.51 0.00 45.50 4.00
46 47 2.073716 TGGGACCCAACGACCAACT 61.074 57.895 12.05 0.00 0.00 3.16
57 58 4.081862 CCAACGACCAACTAGTCTATTCCA 60.082 45.833 0.00 0.00 34.46 3.53
61 62 4.275196 CGACCAACTAGTCTATTCCATCGA 59.725 45.833 0.00 0.00 34.46 3.59
64 65 4.926238 CCAACTAGTCTATTCCATCGATGC 59.074 45.833 20.25 4.39 0.00 3.91
206 207 2.171237 CAAGCACCATAGTGATCCTCCA 59.829 50.000 0.00 0.00 43.21 3.86
221 222 2.813754 TCCTCCATGAAAAGTTCAAGCG 59.186 45.455 0.00 0.00 43.95 4.68
378 379 3.005791 GGGCATGGTAGATAATTTGGTGC 59.994 47.826 0.00 0.00 0.00 5.01
386 387 5.065988 GGTAGATAATTTGGTGCGTGATGTT 59.934 40.000 0.00 0.00 0.00 2.71
408 409 6.367422 TGTTCGGTCCAAATTTAATCATTTGC 59.633 34.615 6.98 0.00 41.17 3.68
409 410 6.279513 TCGGTCCAAATTTAATCATTTGCT 57.720 33.333 6.98 0.00 41.17 3.91
410 411 6.098679 TCGGTCCAAATTTAATCATTTGCTG 58.901 36.000 6.98 1.90 41.17 4.41
412 413 6.254157 CGGTCCAAATTTAATCATTTGCTGAG 59.746 38.462 6.98 0.00 41.17 3.35
459 554 0.537143 AATTTGGAGCGCACCTCACA 60.537 50.000 24.52 1.01 42.62 3.58
505 600 5.423886 TGTTTTGACCCAATTTTCTTGACC 58.576 37.500 0.00 0.00 0.00 4.02
518 613 2.747177 TCTTGACCGGGTGTAGATGAT 58.253 47.619 3.30 0.00 0.00 2.45
535 630 0.536006 GATCCCGGGCTCAGAATTGG 60.536 60.000 19.59 0.00 0.00 3.16
549 644 7.604164 GGCTCAGAATTGGATATTCGAATCTTA 59.396 37.037 15.25 0.00 33.51 2.10
926 1037 3.245754 ACGAAATACGAGTCGCAAACAAA 59.754 39.130 13.59 0.00 45.77 2.83
957 1068 3.712881 GCACTGGACGAACACGCC 61.713 66.667 0.00 0.00 0.00 5.68
1051 1174 0.036010 AAAGATGCTGAGGTCCACCG 60.036 55.000 0.00 0.00 42.08 4.94
1566 1689 2.542205 CGAGTACAACGTCACTTGGTCA 60.542 50.000 0.00 0.00 0.00 4.02
1600 1752 7.492524 ACCTATATATGTGCATGGACGAATAG 58.507 38.462 13.03 14.38 0.00 1.73
1605 1757 2.233676 TGTGCATGGACGAATAGAGTGT 59.766 45.455 13.03 0.00 0.00 3.55
1608 1760 3.445805 TGCATGGACGAATAGAGTGTACA 59.554 43.478 0.00 0.00 0.00 2.90
1609 1761 3.797256 GCATGGACGAATAGAGTGTACAC 59.203 47.826 18.56 18.56 0.00 2.90
1610 1762 3.752412 TGGACGAATAGAGTGTACACG 57.248 47.619 19.93 9.14 36.20 4.49
1613 1765 1.202110 ACGAATAGAGTGTACACGCGG 60.202 52.381 21.71 13.05 36.21 6.46
1634 1786 4.082679 CGGACCCAAAATGAATAAACGGAA 60.083 41.667 0.00 0.00 0.00 4.30
1751 2867 1.745489 GGTACGCTTTGCCCTGGAG 60.745 63.158 0.00 0.00 0.00 3.86
1764 2880 2.669569 TGGAGTGCTTTGCCGAGC 60.670 61.111 1.72 1.72 43.00 5.03
1797 2913 3.110178 GGAGTGTACGCCGTGTGC 61.110 66.667 0.00 0.00 0.00 4.57
1848 2964 1.067199 GTTCACGGCGTACACGTAGG 61.067 60.000 14.22 0.00 43.58 3.18
1872 2988 1.508632 CCGAGTACCACCTGTTTGTG 58.491 55.000 0.00 0.00 35.98 3.33
1896 3012 3.238232 CCATCATGGGCATACTCGG 57.762 57.895 0.00 0.00 32.67 4.63
1897 3013 0.321919 CCATCATGGGCATACTCGGG 60.322 60.000 0.00 0.00 32.67 5.14
1898 3014 0.397941 CATCATGGGCATACTCGGGT 59.602 55.000 0.00 0.00 0.00 5.28
1899 3015 1.140312 ATCATGGGCATACTCGGGTT 58.860 50.000 0.00 0.00 0.00 4.11
1900 3016 1.796017 TCATGGGCATACTCGGGTTA 58.204 50.000 0.00 0.00 0.00 2.85
1901 3017 1.691976 TCATGGGCATACTCGGGTTAG 59.308 52.381 0.00 0.00 0.00 2.34
1902 3018 1.056660 ATGGGCATACTCGGGTTAGG 58.943 55.000 0.00 0.00 0.00 2.69
1903 3019 0.325860 TGGGCATACTCGGGTTAGGT 60.326 55.000 0.00 0.00 0.00 3.08
1904 3020 0.106149 GGGCATACTCGGGTTAGGTG 59.894 60.000 0.00 0.00 0.00 4.00
1905 3021 0.532196 GGCATACTCGGGTTAGGTGC 60.532 60.000 0.00 0.00 33.81 5.01
1906 3022 0.177141 GCATACTCGGGTTAGGTGCA 59.823 55.000 0.00 0.00 34.36 4.57
1907 3023 1.806623 GCATACTCGGGTTAGGTGCAG 60.807 57.143 0.00 0.00 34.36 4.41
1913 3029 2.431057 CTCGGGTTAGGTGCAGATAAGT 59.569 50.000 0.00 0.00 0.00 2.24
1935 3051 5.178067 AGTCGTAAATTAACCCGTGTTTCAG 59.822 40.000 0.00 0.00 35.87 3.02
1943 3059 1.594293 CCGTGTTTCAGCACTCGGT 60.594 57.895 7.12 0.00 44.93 4.69
1989 3107 1.335496 GTTTTTCCGTAGTGGCTGCAA 59.665 47.619 0.50 0.00 37.80 4.08
2015 3133 3.247006 TCGGAGATGTGGCTAGTTTTC 57.753 47.619 0.00 0.00 0.00 2.29
2031 3149 6.638873 GCTAGTTTTCTCTTCTTCTTTTTGGC 59.361 38.462 0.00 0.00 0.00 4.52
2035 3153 2.158667 TCTCTTCTTCTTTTTGGCGGGT 60.159 45.455 0.00 0.00 0.00 5.28
2080 4248 3.057174 CCTAGGCGTGGCAAAATGTTAAA 60.057 43.478 0.00 0.00 0.00 1.52
2126 4300 0.820871 GACCGCCAGTGAGATCTCTT 59.179 55.000 22.95 9.16 0.00 2.85
2127 4301 0.534412 ACCGCCAGTGAGATCTCTTG 59.466 55.000 22.95 19.15 0.00 3.02
2148 4322 0.473694 TGAGAGGCAGGGTTTGGAGA 60.474 55.000 0.00 0.00 0.00 3.71
2157 4331 1.351350 AGGGTTTGGAGAAGTGGTAGC 59.649 52.381 0.00 0.00 0.00 3.58
2185 4359 2.832129 AGAAATCTACAGAGCCGTTGGA 59.168 45.455 0.00 0.00 0.00 3.53
2199 4373 2.610479 CCGTTGGATCAGGATCATACCG 60.610 54.545 11.12 7.10 39.54 4.02
2214 4388 4.851843 TCATACCGAGGAGAGTGAAGTAA 58.148 43.478 0.00 0.00 0.00 2.24
2228 4402 8.617290 AGAGTGAAGTAACCGAAAACAATATT 57.383 30.769 0.00 0.00 0.00 1.28
2231 4405 8.448615 AGTGAAGTAACCGAAAACAATATTAGC 58.551 33.333 0.00 0.00 0.00 3.09
2233 4407 6.354039 AGTAACCGAAAACAATATTAGCCG 57.646 37.500 0.00 0.00 0.00 5.52
2234 4408 3.685836 ACCGAAAACAATATTAGCCGC 57.314 42.857 0.00 0.00 0.00 6.53
2235 4409 3.011119 ACCGAAAACAATATTAGCCGCA 58.989 40.909 0.00 0.00 0.00 5.69
2241 4433 6.140737 CGAAAACAATATTAGCCGCATTTCTC 59.859 38.462 0.00 0.00 0.00 2.87
2271 4463 0.540454 TCGCTCTTACGGAGGAGAGA 59.460 55.000 11.65 10.34 42.08 3.10
2272 4464 0.941542 CGCTCTTACGGAGGAGAGAG 59.058 60.000 11.65 0.00 42.08 3.20
2273 4465 1.744456 CGCTCTTACGGAGGAGAGAGT 60.744 57.143 11.65 0.00 42.08 3.24
2274 4466 1.673920 GCTCTTACGGAGGAGAGAGTG 59.326 57.143 11.65 0.00 42.08 3.51
2275 4467 1.673920 CTCTTACGGAGGAGAGAGTGC 59.326 57.143 0.00 0.00 42.08 4.40
2276 4468 1.004394 TCTTACGGAGGAGAGAGTGCA 59.996 52.381 0.00 0.00 0.00 4.57
2277 4469 1.403679 CTTACGGAGGAGAGAGTGCAG 59.596 57.143 0.00 0.00 0.00 4.41
2278 4470 0.328592 TACGGAGGAGAGAGTGCAGT 59.671 55.000 0.00 0.00 0.00 4.40
2279 4471 0.540830 ACGGAGGAGAGAGTGCAGTT 60.541 55.000 0.00 0.00 0.00 3.16
2280 4472 0.605589 CGGAGGAGAGAGTGCAGTTT 59.394 55.000 0.00 0.00 0.00 2.66
2281 4473 1.001406 CGGAGGAGAGAGTGCAGTTTT 59.999 52.381 0.00 0.00 0.00 2.43
2282 4474 2.548920 CGGAGGAGAGAGTGCAGTTTTT 60.549 50.000 0.00 0.00 0.00 1.94
2316 4508 5.130292 CCATCATGGCTGGCTTTATTAAG 57.870 43.478 2.00 0.00 34.36 1.85
2317 4509 4.828939 CCATCATGGCTGGCTTTATTAAGA 59.171 41.667 2.00 0.00 32.92 2.10
2318 4510 5.278660 CCATCATGGCTGGCTTTATTAAGAC 60.279 44.000 2.00 0.00 40.04 3.01
2345 4537 4.842139 AACGAAAACATCATCTACGAGC 57.158 40.909 0.00 0.00 0.00 5.03
2346 4538 2.852413 ACGAAAACATCATCTACGAGCG 59.148 45.455 0.00 0.00 0.00 5.03
2347 4539 3.105937 CGAAAACATCATCTACGAGCGA 58.894 45.455 0.00 0.00 0.00 4.93
2348 4540 3.546271 CGAAAACATCATCTACGAGCGAA 59.454 43.478 0.00 0.00 0.00 4.70
2349 4541 4.207224 CGAAAACATCATCTACGAGCGAAT 59.793 41.667 0.00 0.00 0.00 3.34
2350 4542 5.276395 CGAAAACATCATCTACGAGCGAATT 60.276 40.000 0.00 0.00 0.00 2.17
2351 4543 5.643339 AAACATCATCTACGAGCGAATTC 57.357 39.130 0.00 0.00 0.00 2.17
2352 4544 4.307443 ACATCATCTACGAGCGAATTCA 57.693 40.909 6.22 0.00 0.00 2.57
2353 4545 4.045104 ACATCATCTACGAGCGAATTCAC 58.955 43.478 6.22 0.00 0.00 3.18
2354 4546 3.079960 TCATCTACGAGCGAATTCACC 57.920 47.619 6.22 0.00 0.00 4.02
2355 4547 2.425668 TCATCTACGAGCGAATTCACCA 59.574 45.455 6.22 0.00 0.00 4.17
2356 4548 2.273370 TCTACGAGCGAATTCACCAC 57.727 50.000 6.22 0.00 0.00 4.16
2357 4549 1.542472 TCTACGAGCGAATTCACCACA 59.458 47.619 6.22 0.00 0.00 4.17
2358 4550 1.654105 CTACGAGCGAATTCACCACAC 59.346 52.381 6.22 0.00 0.00 3.82
2359 4551 0.249699 ACGAGCGAATTCACCACACA 60.250 50.000 6.22 0.00 0.00 3.72
2360 4552 0.865111 CGAGCGAATTCACCACACAA 59.135 50.000 6.22 0.00 0.00 3.33
2361 4553 1.262950 CGAGCGAATTCACCACACAAA 59.737 47.619 6.22 0.00 0.00 2.83
2362 4554 2.650608 GAGCGAATTCACCACACAAAC 58.349 47.619 6.22 0.00 0.00 2.93
2363 4555 2.290641 GAGCGAATTCACCACACAAACT 59.709 45.455 6.22 0.00 0.00 2.66
2364 4556 2.033299 AGCGAATTCACCACACAAACTG 59.967 45.455 6.22 0.00 0.00 3.16
2365 4557 2.858260 GCGAATTCACCACACAAACTGG 60.858 50.000 6.22 0.00 34.62 4.00
2366 4558 2.357637 CGAATTCACCACACAAACTGGT 59.642 45.455 6.22 0.00 43.22 4.00
2372 4564 1.648720 CACACAAACTGGTGGCTCG 59.351 57.895 0.00 0.00 43.08 5.03
2373 4565 1.095228 CACACAAACTGGTGGCTCGT 61.095 55.000 0.00 0.00 43.08 4.18
2374 4566 0.814010 ACACAAACTGGTGGCTCGTC 60.814 55.000 0.00 0.00 43.08 4.20
2375 4567 1.227853 ACAAACTGGTGGCTCGTCC 60.228 57.895 0.00 0.00 0.00 4.79
2376 4568 1.227823 CAAACTGGTGGCTCGTCCA 60.228 57.895 0.00 0.00 44.18 4.02
2383 4575 3.236391 TGGCTCGTCCAACCAACT 58.764 55.556 0.00 0.00 43.21 3.16
2384 4576 1.529796 TGGCTCGTCCAACCAACTT 59.470 52.632 0.00 0.00 43.21 2.66
2385 4577 0.817634 TGGCTCGTCCAACCAACTTG 60.818 55.000 0.00 0.00 43.21 3.16
2386 4578 0.818040 GGCTCGTCCAACCAACTTGT 60.818 55.000 0.00 0.00 34.01 3.16
2387 4579 1.541670 GGCTCGTCCAACCAACTTGTA 60.542 52.381 0.00 0.00 34.01 2.41
2388 4580 1.798813 GCTCGTCCAACCAACTTGTAG 59.201 52.381 0.00 0.00 0.00 2.74
2389 4581 2.547218 GCTCGTCCAACCAACTTGTAGA 60.547 50.000 0.00 0.00 0.00 2.59
2390 4582 3.724374 CTCGTCCAACCAACTTGTAGAA 58.276 45.455 0.00 0.00 0.00 2.10
2391 4583 3.724374 TCGTCCAACCAACTTGTAGAAG 58.276 45.455 0.00 0.00 35.07 2.85
2392 4584 3.133362 TCGTCCAACCAACTTGTAGAAGT 59.867 43.478 0.00 0.00 44.79 3.01
2393 4585 3.493503 CGTCCAACCAACTTGTAGAAGTC 59.506 47.826 5.63 0.00 41.87 3.01
2394 4586 4.704965 GTCCAACCAACTTGTAGAAGTCT 58.295 43.478 5.63 0.00 41.87 3.24
2395 4587 5.123936 GTCCAACCAACTTGTAGAAGTCTT 58.876 41.667 5.63 0.00 41.87 3.01
2396 4588 6.285990 GTCCAACCAACTTGTAGAAGTCTTA 58.714 40.000 5.63 0.00 41.87 2.10
2397 4589 6.935208 GTCCAACCAACTTGTAGAAGTCTTAT 59.065 38.462 5.63 0.00 41.87 1.73
2398 4590 7.444487 GTCCAACCAACTTGTAGAAGTCTTATT 59.556 37.037 5.63 0.00 41.87 1.40
2399 4591 8.653191 TCCAACCAACTTGTAGAAGTCTTATTA 58.347 33.333 5.63 0.00 41.87 0.98
2400 4592 8.718734 CCAACCAACTTGTAGAAGTCTTATTAC 58.281 37.037 5.63 0.00 41.87 1.89
2401 4593 9.268268 CAACCAACTTGTAGAAGTCTTATTACA 57.732 33.333 5.63 5.67 41.87 2.41
2402 4594 9.841295 AACCAACTTGTAGAAGTCTTATTACAA 57.159 29.630 5.63 15.83 41.87 2.41
2403 4595 9.841295 ACCAACTTGTAGAAGTCTTATTACAAA 57.159 29.630 5.63 7.14 41.87 2.83
2425 4617 9.410556 ACAAAAACTAAAATTAGCTAGCACATG 57.589 29.630 18.83 0.00 34.09 3.21
2426 4618 8.375465 CAAAAACTAAAATTAGCTAGCACATGC 58.625 33.333 18.83 0.00 36.37 4.06
2427 4619 5.409643 ACTAAAATTAGCTAGCACATGCG 57.590 39.130 18.83 0.59 39.08 4.73
2428 4620 4.876107 ACTAAAATTAGCTAGCACATGCGT 59.124 37.500 18.83 1.24 39.08 5.24
2429 4621 5.006746 ACTAAAATTAGCTAGCACATGCGTC 59.993 40.000 18.83 0.00 39.08 5.19
2430 4622 7.344800 ACTAAAATTAGCTAGCACATGCGTCA 61.345 38.462 18.83 0.00 39.08 4.35
2431 4623 9.256251 ACTAAAATTAGCTAGCACATGCGTCAC 62.256 40.741 18.83 0.00 39.08 3.67
2439 4631 3.043635 GCACATGCGTCACTTGATTAG 57.956 47.619 0.00 0.00 0.00 1.73
2440 4632 2.789092 GCACATGCGTCACTTGATTAGC 60.789 50.000 0.00 0.00 0.00 3.09
2441 4633 2.416202 CACATGCGTCACTTGATTAGCA 59.584 45.455 8.67 8.67 36.69 3.49
2442 4634 2.674852 ACATGCGTCACTTGATTAGCAG 59.325 45.455 10.98 7.25 36.11 4.24
2443 4635 2.741759 TGCGTCACTTGATTAGCAGA 57.258 45.000 3.79 0.00 31.76 4.26
2444 4636 3.251479 TGCGTCACTTGATTAGCAGAT 57.749 42.857 3.79 0.00 31.76 2.90
2445 4637 3.190079 TGCGTCACTTGATTAGCAGATC 58.810 45.455 3.79 0.00 31.76 2.75
2446 4638 2.217393 GCGTCACTTGATTAGCAGATCG 59.783 50.000 0.00 0.00 0.00 3.69
2447 4639 3.695816 CGTCACTTGATTAGCAGATCGA 58.304 45.455 0.00 0.00 0.00 3.59
2448 4640 4.105486 CGTCACTTGATTAGCAGATCGAA 58.895 43.478 0.00 0.00 0.00 3.71
2449 4641 4.562789 CGTCACTTGATTAGCAGATCGAAA 59.437 41.667 0.00 0.00 0.00 3.46
2450 4642 5.062183 CGTCACTTGATTAGCAGATCGAAAA 59.938 40.000 0.00 0.00 0.00 2.29
2451 4643 6.244275 GTCACTTGATTAGCAGATCGAAAAC 58.756 40.000 0.00 0.00 0.00 2.43
2452 4644 5.931724 TCACTTGATTAGCAGATCGAAAACA 59.068 36.000 0.00 0.00 0.00 2.83
2453 4645 6.426633 TCACTTGATTAGCAGATCGAAAACAA 59.573 34.615 0.00 0.00 0.00 2.83
2454 4646 7.119699 TCACTTGATTAGCAGATCGAAAACAAT 59.880 33.333 0.00 0.00 0.00 2.71
2455 4647 7.217636 CACTTGATTAGCAGATCGAAAACAATG 59.782 37.037 0.00 0.00 0.00 2.82
2456 4648 5.572211 TGATTAGCAGATCGAAAACAATGC 58.428 37.500 0.00 0.00 0.00 3.56
2457 4649 5.123661 TGATTAGCAGATCGAAAACAATGCA 59.876 36.000 0.00 0.00 36.15 3.96
2458 4650 5.565592 TTAGCAGATCGAAAACAATGCAT 57.434 34.783 0.00 0.00 36.15 3.96
2459 4651 6.676237 TTAGCAGATCGAAAACAATGCATA 57.324 33.333 0.00 0.00 36.15 3.14
2460 4652 5.762825 AGCAGATCGAAAACAATGCATAT 57.237 34.783 0.00 0.00 36.15 1.78
2461 4653 6.866010 AGCAGATCGAAAACAATGCATATA 57.134 33.333 0.00 0.00 36.15 0.86
2462 4654 7.263100 AGCAGATCGAAAACAATGCATATAA 57.737 32.000 0.00 0.00 36.15 0.98
2463 4655 7.879070 AGCAGATCGAAAACAATGCATATAAT 58.121 30.769 0.00 0.00 36.15 1.28
2464 4656 8.355169 AGCAGATCGAAAACAATGCATATAATT 58.645 29.630 0.00 0.00 36.15 1.40
2465 4657 8.422457 GCAGATCGAAAACAATGCATATAATTG 58.578 33.333 0.00 0.00 40.23 2.32
2466 4658 9.667989 CAGATCGAAAACAATGCATATAATTGA 57.332 29.630 14.26 0.00 38.21 2.57
2467 4659 9.669353 AGATCGAAAACAATGCATATAATTGAC 57.331 29.630 14.26 5.24 38.21 3.18
2468 4660 8.801715 ATCGAAAACAATGCATATAATTGACC 57.198 30.769 14.26 3.45 38.21 4.02
2469 4661 7.995289 TCGAAAACAATGCATATAATTGACCT 58.005 30.769 14.26 2.01 38.21 3.85
2470 4662 8.465999 TCGAAAACAATGCATATAATTGACCTT 58.534 29.630 14.26 6.63 38.21 3.50
2471 4663 8.745837 CGAAAACAATGCATATAATTGACCTTC 58.254 33.333 14.26 11.76 38.21 3.46
2472 4664 8.947055 AAAACAATGCATATAATTGACCTTCC 57.053 30.769 14.26 0.00 38.21 3.46
2473 4665 6.655078 ACAATGCATATAATTGACCTTCCC 57.345 37.500 14.26 0.00 38.21 3.97
2474 4666 6.135454 ACAATGCATATAATTGACCTTCCCA 58.865 36.000 14.26 0.00 38.21 4.37
2475 4667 6.610830 ACAATGCATATAATTGACCTTCCCAA 59.389 34.615 14.26 0.00 38.21 4.12
2476 4668 7.290714 ACAATGCATATAATTGACCTTCCCAAT 59.709 33.333 14.26 0.00 38.21 3.16
2477 4669 7.860649 ATGCATATAATTGACCTTCCCAATT 57.139 32.000 0.00 0.00 43.93 2.32
2478 4670 7.053316 TGCATATAATTGACCTTCCCAATTG 57.947 36.000 10.32 0.00 42.28 2.32
2479 4671 6.838090 TGCATATAATTGACCTTCCCAATTGA 59.162 34.615 7.12 0.00 42.28 2.57
2480 4672 7.510001 TGCATATAATTGACCTTCCCAATTGAT 59.490 33.333 7.12 3.03 42.28 2.57
2481 4673 9.023962 GCATATAATTGACCTTCCCAATTGATA 57.976 33.333 7.12 0.00 42.28 2.15
2484 4676 8.697507 ATAATTGACCTTCCCAATTGATACTC 57.302 34.615 7.12 0.00 42.28 2.59
2485 4677 4.503714 TGACCTTCCCAATTGATACTCC 57.496 45.455 7.12 0.00 0.00 3.85
2486 4678 3.849574 TGACCTTCCCAATTGATACTCCA 59.150 43.478 7.12 0.00 0.00 3.86
2487 4679 4.290985 TGACCTTCCCAATTGATACTCCAA 59.709 41.667 7.12 0.00 0.00 3.53
2488 4680 5.044179 TGACCTTCCCAATTGATACTCCAAT 60.044 40.000 7.12 0.00 38.30 3.16
2489 4681 5.203528 ACCTTCCCAATTGATACTCCAATG 58.796 41.667 7.12 0.00 36.90 2.82
2490 4682 5.203528 CCTTCCCAATTGATACTCCAATGT 58.796 41.667 7.12 0.00 36.90 2.71
2491 4683 5.300286 CCTTCCCAATTGATACTCCAATGTC 59.700 44.000 7.12 0.00 36.90 3.06
2492 4684 5.449297 TCCCAATTGATACTCCAATGTCA 57.551 39.130 7.12 0.00 36.90 3.58
2493 4685 5.825532 TCCCAATTGATACTCCAATGTCAA 58.174 37.500 7.12 0.00 36.90 3.18
2494 4686 5.652014 TCCCAATTGATACTCCAATGTCAAC 59.348 40.000 7.12 0.00 36.90 3.18
2495 4687 5.418524 CCCAATTGATACTCCAATGTCAACA 59.581 40.000 7.12 0.00 36.90 3.33
2496 4688 6.324819 CCAATTGATACTCCAATGTCAACAC 58.675 40.000 7.12 0.00 36.90 3.32
2497 4689 6.072008 CCAATTGATACTCCAATGTCAACACA 60.072 38.462 7.12 0.00 36.90 3.72
2498 4690 7.363181 CCAATTGATACTCCAATGTCAACACAT 60.363 37.037 7.12 0.00 45.89 3.21
2511 4703 7.636259 ATGTCAACACATTCCGTAAAAATTG 57.364 32.000 0.00 0.00 40.66 2.32
2512 4704 5.460419 TGTCAACACATTCCGTAAAAATTGC 59.540 36.000 0.00 0.00 0.00 3.56
2513 4705 5.460419 GTCAACACATTCCGTAAAAATTGCA 59.540 36.000 0.00 0.00 0.00 4.08
2514 4706 5.689514 TCAACACATTCCGTAAAAATTGCAG 59.310 36.000 0.00 0.00 0.00 4.41
2515 4707 3.987220 ACACATTCCGTAAAAATTGCAGC 59.013 39.130 0.00 0.00 0.00 5.25
2516 4708 3.367630 CACATTCCGTAAAAATTGCAGCC 59.632 43.478 0.00 0.00 0.00 4.85
2517 4709 2.339728 TTCCGTAAAAATTGCAGCCG 57.660 45.000 0.00 0.00 0.00 5.52
2518 4710 0.109504 TCCGTAAAAATTGCAGCCGC 60.110 50.000 0.00 0.00 39.24 6.53
2519 4711 1.402479 CCGTAAAAATTGCAGCCGCG 61.402 55.000 0.00 0.00 42.97 6.46
2520 4712 1.402479 CGTAAAAATTGCAGCCGCGG 61.402 55.000 24.05 24.05 42.97 6.46
2521 4713 1.075979 GTAAAAATTGCAGCCGCGGG 61.076 55.000 29.38 12.76 42.97 6.13
2522 4714 1.244697 TAAAAATTGCAGCCGCGGGA 61.245 50.000 29.38 0.00 42.97 5.14
2523 4715 1.887344 AAAAATTGCAGCCGCGGGAT 61.887 50.000 29.38 2.80 42.97 3.85
2524 4716 2.283472 AAAATTGCAGCCGCGGGATC 62.283 55.000 29.38 10.66 42.97 3.36
2532 4724 4.935495 CCGCGGGATCCCACCATG 62.935 72.222 30.42 14.63 35.37 3.66
2533 4725 4.175337 CGCGGGATCCCACCATGT 62.175 66.667 30.42 0.00 35.37 3.21
2534 4726 2.802724 CGCGGGATCCCACCATGTA 61.803 63.158 30.42 0.00 35.37 2.29
2535 4727 1.761174 GCGGGATCCCACCATGTAT 59.239 57.895 30.42 0.00 35.37 2.29
2536 4728 0.110486 GCGGGATCCCACCATGTATT 59.890 55.000 30.42 0.00 35.37 1.89
2537 4729 1.349688 GCGGGATCCCACCATGTATTA 59.650 52.381 30.42 0.00 35.37 0.98
2538 4730 2.026262 GCGGGATCCCACCATGTATTAT 60.026 50.000 30.42 0.00 35.37 1.28
2539 4731 3.609853 CGGGATCCCACCATGTATTATG 58.390 50.000 30.42 5.33 35.37 1.90
2540 4732 3.009033 CGGGATCCCACCATGTATTATGT 59.991 47.826 30.42 0.00 35.37 2.29
2541 4733 4.589908 GGGATCCCACCATGTATTATGTC 58.410 47.826 26.95 0.00 35.81 3.06
2542 4734 4.567747 GGGATCCCACCATGTATTATGTCC 60.568 50.000 26.95 0.00 35.81 4.02
2543 4735 4.567747 GGATCCCACCATGTATTATGTCCC 60.568 50.000 0.00 0.00 0.00 4.46
2544 4736 2.370519 TCCCACCATGTATTATGTCCCG 59.629 50.000 0.00 0.00 0.00 5.14
2545 4737 2.105821 CCCACCATGTATTATGTCCCGT 59.894 50.000 0.00 0.00 0.00 5.28
2546 4738 3.325425 CCCACCATGTATTATGTCCCGTA 59.675 47.826 0.00 0.00 0.00 4.02
2547 4739 4.312443 CCACCATGTATTATGTCCCGTAC 58.688 47.826 0.00 0.00 0.00 3.67
2548 4740 4.202274 CCACCATGTATTATGTCCCGTACA 60.202 45.833 0.00 0.00 43.86 2.90
2549 4741 4.988540 CACCATGTATTATGTCCCGTACAG 59.011 45.833 0.00 0.00 42.70 2.74
2550 4742 4.897076 ACCATGTATTATGTCCCGTACAGA 59.103 41.667 0.00 0.00 42.70 3.41
2551 4743 5.364446 ACCATGTATTATGTCCCGTACAGAA 59.636 40.000 0.00 0.00 43.10 3.02
2552 4744 6.126997 ACCATGTATTATGTCCCGTACAGAAA 60.127 38.462 0.00 0.00 42.28 2.52
2553 4745 6.934645 CCATGTATTATGTCCCGTACAGAAAT 59.065 38.462 0.00 0.00 42.28 2.17
2554 4746 7.444183 CCATGTATTATGTCCCGTACAGAAATT 59.556 37.037 0.00 0.00 42.28 1.82
2555 4747 9.483916 CATGTATTATGTCCCGTACAGAAATTA 57.516 33.333 0.00 0.00 42.28 1.40
2561 4753 7.797038 ATGTCCCGTACAGAAATTAATAACC 57.203 36.000 0.00 0.00 42.70 2.85
2562 4754 6.949715 TGTCCCGTACAGAAATTAATAACCT 58.050 36.000 0.00 0.00 33.01 3.50
2563 4755 7.043565 TGTCCCGTACAGAAATTAATAACCTC 58.956 38.462 0.00 0.00 33.01 3.85
2564 4756 6.481313 GTCCCGTACAGAAATTAATAACCTCC 59.519 42.308 0.00 0.00 0.00 4.30
2565 4757 6.384886 TCCCGTACAGAAATTAATAACCTCCT 59.615 38.462 0.00 0.00 0.00 3.69
2566 4758 6.482308 CCCGTACAGAAATTAATAACCTCCTG 59.518 42.308 0.00 0.00 0.00 3.86
2567 4759 7.046033 CCGTACAGAAATTAATAACCTCCTGT 58.954 38.462 0.00 0.00 37.40 4.00
2568 4760 7.011109 CCGTACAGAAATTAATAACCTCCTGTG 59.989 40.741 0.00 0.00 35.54 3.66
2569 4761 7.762615 CGTACAGAAATTAATAACCTCCTGTGA 59.237 37.037 0.00 0.00 35.54 3.58
2570 4762 9.099454 GTACAGAAATTAATAACCTCCTGTGAG 57.901 37.037 0.00 0.00 38.42 3.51
2571 4763 7.690256 ACAGAAATTAATAACCTCCTGTGAGT 58.310 34.615 0.00 0.00 36.86 3.41
2572 4764 7.824779 ACAGAAATTAATAACCTCCTGTGAGTC 59.175 37.037 0.00 0.00 36.86 3.36
2573 4765 8.043710 CAGAAATTAATAACCTCCTGTGAGTCT 58.956 37.037 0.00 0.00 36.86 3.24
2574 4766 8.043710 AGAAATTAATAACCTCCTGTGAGTCTG 58.956 37.037 0.00 0.00 36.86 3.51
2575 4767 7.496346 AATTAATAACCTCCTGTGAGTCTGA 57.504 36.000 0.00 0.00 36.86 3.27
2576 4768 7.682787 ATTAATAACCTCCTGTGAGTCTGAT 57.317 36.000 0.00 0.00 36.86 2.90
2577 4769 7.496346 TTAATAACCTCCTGTGAGTCTGATT 57.504 36.000 0.00 0.00 36.86 2.57
2578 4770 6.380079 AATAACCTCCTGTGAGTCTGATTT 57.620 37.500 0.00 0.00 36.86 2.17
2579 4771 7.496346 AATAACCTCCTGTGAGTCTGATTTA 57.504 36.000 0.00 0.00 36.86 1.40
2580 4772 5.413309 AACCTCCTGTGAGTCTGATTTAG 57.587 43.478 0.00 0.00 36.86 1.85
2581 4773 3.196685 ACCTCCTGTGAGTCTGATTTAGC 59.803 47.826 0.00 0.00 36.86 3.09
2582 4774 3.431486 CCTCCTGTGAGTCTGATTTAGCC 60.431 52.174 0.00 0.00 36.86 3.93
2583 4775 3.445008 TCCTGTGAGTCTGATTTAGCCT 58.555 45.455 0.00 0.00 0.00 4.58
2584 4776 3.449018 TCCTGTGAGTCTGATTTAGCCTC 59.551 47.826 0.00 0.00 32.07 4.70
2585 4777 3.443037 CTGTGAGTCTGATTTAGCCTCG 58.557 50.000 0.00 0.00 34.14 4.63
2586 4778 3.089284 TGTGAGTCTGATTTAGCCTCGA 58.911 45.455 0.00 0.00 34.14 4.04
2587 4779 3.119459 TGTGAGTCTGATTTAGCCTCGAC 60.119 47.826 0.00 0.00 34.14 4.20
2588 4780 3.089284 TGAGTCTGATTTAGCCTCGACA 58.911 45.455 0.00 0.00 34.14 4.35
2589 4781 3.119459 TGAGTCTGATTTAGCCTCGACAC 60.119 47.826 0.00 0.00 34.14 3.67
2590 4782 2.159366 AGTCTGATTTAGCCTCGACACG 60.159 50.000 0.00 0.00 0.00 4.49
2591 4783 1.134367 TCTGATTTAGCCTCGACACGG 59.866 52.381 0.00 0.00 0.00 4.94
2592 4784 0.892755 TGATTTAGCCTCGACACGGT 59.107 50.000 0.00 0.00 0.00 4.83
2593 4785 1.278238 GATTTAGCCTCGACACGGTG 58.722 55.000 6.58 6.58 0.00 4.94
2594 4786 0.108329 ATTTAGCCTCGACACGGTGG 60.108 55.000 13.48 0.00 0.00 4.61
2595 4787 1.180456 TTTAGCCTCGACACGGTGGA 61.180 55.000 13.48 0.00 0.00 4.02
2596 4788 1.180456 TTAGCCTCGACACGGTGGAA 61.180 55.000 13.48 0.00 0.00 3.53
2597 4789 0.968901 TAGCCTCGACACGGTGGAAT 60.969 55.000 13.48 0.00 0.00 3.01
2598 4790 1.810030 GCCTCGACACGGTGGAATC 60.810 63.158 13.48 0.03 0.00 2.52
2599 4791 1.153628 CCTCGACACGGTGGAATCC 60.154 63.158 13.48 0.00 0.00 3.01
2600 4792 1.153628 CTCGACACGGTGGAATCCC 60.154 63.158 13.48 0.00 0.00 3.85
2601 4793 1.884075 CTCGACACGGTGGAATCCCA 61.884 60.000 13.48 0.00 40.95 4.37
2602 4794 1.004320 CGACACGGTGGAATCCCAA 60.004 57.895 13.48 0.00 45.59 4.12
2603 4795 1.019278 CGACACGGTGGAATCCCAAG 61.019 60.000 13.48 0.00 45.59 3.61
2604 4796 0.676782 GACACGGTGGAATCCCAAGG 60.677 60.000 13.48 0.00 45.59 3.61
2605 4797 1.131303 ACACGGTGGAATCCCAAGGA 61.131 55.000 13.48 0.00 45.59 3.36
2606 4798 0.392998 CACGGTGGAATCCCAAGGAG 60.393 60.000 0.00 0.00 45.59 3.69
2607 4799 0.840722 ACGGTGGAATCCCAAGGAGT 60.841 55.000 0.00 0.00 45.59 3.85
2608 4800 0.328258 CGGTGGAATCCCAAGGAGTT 59.672 55.000 0.00 0.00 45.59 3.01
2609 4801 1.839424 GGTGGAATCCCAAGGAGTTG 58.161 55.000 0.00 0.00 45.59 3.16
2617 4809 2.049435 CCAAGGAGTTGGCAAACCC 58.951 57.895 17.29 13.94 46.99 4.11
2618 4810 0.469892 CCAAGGAGTTGGCAAACCCT 60.470 55.000 17.29 15.66 46.99 4.34
2619 4811 1.203001 CCAAGGAGTTGGCAAACCCTA 60.203 52.381 18.37 0.00 46.99 3.53
2620 4812 2.162681 CAAGGAGTTGGCAAACCCTAG 58.837 52.381 18.37 7.73 36.51 3.02
2621 4813 1.742308 AGGAGTTGGCAAACCCTAGA 58.258 50.000 17.06 0.00 36.05 2.43
2622 4814 1.351350 AGGAGTTGGCAAACCCTAGAC 59.649 52.381 17.06 0.00 36.05 2.59
2623 4815 1.613520 GGAGTTGGCAAACCCTAGACC 60.614 57.143 0.00 0.00 36.94 3.85
2624 4816 1.073284 GAGTTGGCAAACCCTAGACCA 59.927 52.381 0.00 0.00 36.94 4.02
2625 4817 1.710809 AGTTGGCAAACCCTAGACCAT 59.289 47.619 0.00 0.00 36.94 3.55
2626 4818 2.092323 GTTGGCAAACCCTAGACCATC 58.908 52.381 0.00 0.00 33.59 3.51
2627 4819 1.668826 TGGCAAACCCTAGACCATCT 58.331 50.000 0.00 0.00 33.59 2.90
2628 4820 1.559682 TGGCAAACCCTAGACCATCTC 59.440 52.381 0.00 0.00 33.59 2.75
2629 4821 1.840635 GGCAAACCCTAGACCATCTCT 59.159 52.381 0.00 0.00 0.00 3.10
2630 4822 2.158885 GGCAAACCCTAGACCATCTCTC 60.159 54.545 0.00 0.00 0.00 3.20
2631 4823 2.501723 GCAAACCCTAGACCATCTCTCA 59.498 50.000 0.00 0.00 0.00 3.27
2632 4824 3.135530 GCAAACCCTAGACCATCTCTCAT 59.864 47.826 0.00 0.00 0.00 2.90
2633 4825 4.742138 GCAAACCCTAGACCATCTCTCATC 60.742 50.000 0.00 0.00 0.00 2.92
2634 4826 2.870175 ACCCTAGACCATCTCTCATCG 58.130 52.381 0.00 0.00 0.00 3.84
2635 4827 2.175931 ACCCTAGACCATCTCTCATCGT 59.824 50.000 0.00 0.00 0.00 3.73
2636 4828 2.817258 CCCTAGACCATCTCTCATCGTC 59.183 54.545 0.00 0.00 0.00 4.20
2637 4829 3.481453 CCTAGACCATCTCTCATCGTCA 58.519 50.000 0.00 0.00 0.00 4.35
2638 4830 4.078537 CCTAGACCATCTCTCATCGTCAT 58.921 47.826 0.00 0.00 0.00 3.06
2639 4831 4.522405 CCTAGACCATCTCTCATCGTCATT 59.478 45.833 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.895231 GTTGGTCGTTGGGTCCCAC 60.895 63.158 11.24 5.23 30.78 4.61
46 47 4.560128 GCTTGCATCGATGGAATAGACTA 58.440 43.478 29.13 8.73 37.49 2.59
69 70 4.447342 CCACATGGTGAGGGGCCC 62.447 72.222 17.12 17.12 35.23 5.80
141 142 0.039617 TTCAAAATCTTGGCACGCGG 60.040 50.000 12.47 0.00 33.01 6.46
194 195 6.373005 TGAACTTTTCATGGAGGATCACTA 57.627 37.500 0.00 0.00 32.84 2.74
206 207 3.319755 CATTGGCGCTTGAACTTTTCAT 58.680 40.909 7.64 0.00 39.84 2.57
221 222 1.753073 AGAGGTAAATGCAGCATTGGC 59.247 47.619 21.56 15.81 34.04 4.52
256 257 1.536073 CCAGAACGCCTCACTCCTCA 61.536 60.000 0.00 0.00 0.00 3.86
278 279 2.516460 GCTGCAGATGCTCCTGGG 60.516 66.667 20.43 0.00 42.66 4.45
356 357 3.005791 GCACCAAATTATCTACCATGCCC 59.994 47.826 0.00 0.00 0.00 5.36
363 364 5.734855 ACATCACGCACCAAATTATCTAC 57.265 39.130 0.00 0.00 0.00 2.59
378 379 3.552604 AAATTTGGACCGAACATCACG 57.447 42.857 0.00 0.00 0.00 4.35
386 387 6.071672 TCAGCAAATGATTAAATTTGGACCGA 60.072 34.615 12.38 0.00 44.30 4.69
410 411 5.448360 GCATTTGGACATTTGAGTAGCTCTC 60.448 44.000 0.00 0.00 43.03 3.20
412 413 4.397417 AGCATTTGGACATTTGAGTAGCTC 59.603 41.667 0.00 0.00 0.00 4.09
446 541 3.044305 GGTGTGTGAGGTGCGCTC 61.044 66.667 9.73 4.47 0.00 5.03
459 554 7.285566 ACAGAGCATGATAGATAATTTGGTGT 58.714 34.615 0.00 0.00 0.00 4.16
518 613 0.988145 ATCCAATTCTGAGCCCGGGA 60.988 55.000 29.31 0.71 0.00 5.14
523 618 5.936956 AGATTCGAATATCCAATTCTGAGCC 59.063 40.000 11.38 0.00 0.00 4.70
549 644 8.815912 ACATCTTTTCAACAATTATTAGGCCTT 58.184 29.630 12.58 0.00 0.00 4.35
551 646 9.435688 AAACATCTTTTCAACAATTATTAGGCC 57.564 29.630 0.00 0.00 0.00 5.19
892 999 2.199236 GTATTTCGTCCCGTGTGATCC 58.801 52.381 0.00 0.00 0.00 3.36
957 1068 4.023279 CAGCTCTCTATATATAGGCAGGCG 60.023 50.000 17.81 10.40 0.00 5.52
1018 1137 2.484264 GCATCTTTGTGAAGTTACGGCT 59.516 45.455 0.00 0.00 34.41 5.52
1022 1141 4.757149 ACCTCAGCATCTTTGTGAAGTTAC 59.243 41.667 0.00 0.00 34.41 2.50
1242 1365 1.439858 CGCGTCGAAGTCGTTCAGA 60.440 57.895 0.00 0.00 41.79 3.27
1407 1530 4.394078 TCGTCGACGACCTTGGCG 62.394 66.667 34.97 8.31 44.22 5.69
1566 1689 6.303903 TGCACATATATAGGTCATGCATCT 57.696 37.500 0.00 0.00 36.72 2.90
1600 1752 2.126189 GGGTCCGCGTGTACACTC 60.126 66.667 23.01 14.93 0.00 3.51
1605 1757 0.035036 TCATTTTGGGTCCGCGTGTA 59.965 50.000 4.92 0.00 0.00 2.90
1608 1760 2.116827 TATTCATTTTGGGTCCGCGT 57.883 45.000 4.92 0.00 0.00 6.01
1609 1761 3.175929 GTTTATTCATTTTGGGTCCGCG 58.824 45.455 0.00 0.00 0.00 6.46
1610 1762 3.175929 CGTTTATTCATTTTGGGTCCGC 58.824 45.455 0.00 0.00 0.00 5.54
1613 1765 7.899178 AAATTCCGTTTATTCATTTTGGGTC 57.101 32.000 0.00 0.00 0.00 4.46
1634 1786 6.308566 TGTTAAATAGGCGGCCCTTATAAAT 58.691 36.000 17.02 0.00 42.87 1.40
1724 2813 0.668096 CAAAGCGTACCTGCCACGTA 60.668 55.000 0.00 0.00 41.41 3.57
1751 2867 2.050077 GTTGGCTCGGCAAAGCAC 60.050 61.111 7.51 0.00 44.35 4.40
1764 2880 1.134788 ACTCCGATAAGCCGAAGTTGG 60.135 52.381 0.00 0.00 0.00 3.77
1778 2894 2.979676 ACACGGCGTACACTCCGA 60.980 61.111 14.22 0.00 46.30 4.55
1813 2929 1.896660 AACACCGCGTTCAGGCATT 60.897 52.632 4.92 0.00 29.27 3.56
1814 2930 2.281484 AACACCGCGTTCAGGCAT 60.281 55.556 4.92 0.00 29.27 4.40
1848 2964 0.893447 ACAGGTGGTACTCGGCTTAC 59.107 55.000 0.00 0.00 0.00 2.34
1885 3001 0.106149 CACCTAACCCGAGTATGCCC 59.894 60.000 0.00 0.00 0.00 5.36
1886 3002 0.532196 GCACCTAACCCGAGTATGCC 60.532 60.000 0.00 0.00 0.00 4.40
1887 3003 0.177141 TGCACCTAACCCGAGTATGC 59.823 55.000 0.00 0.00 0.00 3.14
1888 3004 1.754803 TCTGCACCTAACCCGAGTATG 59.245 52.381 0.00 0.00 0.00 2.39
1889 3005 2.154567 TCTGCACCTAACCCGAGTAT 57.845 50.000 0.00 0.00 0.00 2.12
1890 3006 2.154567 ATCTGCACCTAACCCGAGTA 57.845 50.000 0.00 0.00 0.00 2.59
1891 3007 2.154567 TATCTGCACCTAACCCGAGT 57.845 50.000 0.00 0.00 0.00 4.18
1892 3008 2.431057 ACTTATCTGCACCTAACCCGAG 59.569 50.000 0.00 0.00 0.00 4.63
1893 3009 2.429610 GACTTATCTGCACCTAACCCGA 59.570 50.000 0.00 0.00 0.00 5.14
1894 3010 2.798499 CGACTTATCTGCACCTAACCCG 60.798 54.545 0.00 0.00 0.00 5.28
1895 3011 2.167900 ACGACTTATCTGCACCTAACCC 59.832 50.000 0.00 0.00 0.00 4.11
1896 3012 3.521947 ACGACTTATCTGCACCTAACC 57.478 47.619 0.00 0.00 0.00 2.85
1897 3013 7.535489 AATTTACGACTTATCTGCACCTAAC 57.465 36.000 0.00 0.00 0.00 2.34
1898 3014 9.090692 GTTAATTTACGACTTATCTGCACCTAA 57.909 33.333 0.00 0.00 0.00 2.69
1899 3015 7.707893 GGTTAATTTACGACTTATCTGCACCTA 59.292 37.037 0.00 0.00 0.00 3.08
1900 3016 6.537660 GGTTAATTTACGACTTATCTGCACCT 59.462 38.462 0.00 0.00 0.00 4.00
1901 3017 6.238293 GGGTTAATTTACGACTTATCTGCACC 60.238 42.308 0.00 0.00 0.00 5.01
1902 3018 6.509039 CGGGTTAATTTACGACTTATCTGCAC 60.509 42.308 0.00 0.00 0.00 4.57
1903 3019 5.521010 CGGGTTAATTTACGACTTATCTGCA 59.479 40.000 0.00 0.00 0.00 4.41
1904 3020 5.521372 ACGGGTTAATTTACGACTTATCTGC 59.479 40.000 0.00 0.00 0.00 4.26
1905 3021 6.532657 ACACGGGTTAATTTACGACTTATCTG 59.467 38.462 0.00 0.00 0.00 2.90
1906 3022 6.633856 ACACGGGTTAATTTACGACTTATCT 58.366 36.000 0.00 0.00 0.00 1.98
1907 3023 6.892310 ACACGGGTTAATTTACGACTTATC 57.108 37.500 0.00 0.00 0.00 1.75
1913 3029 4.083908 GCTGAAACACGGGTTAATTTACGA 60.084 41.667 1.98 0.00 35.82 3.43
1943 3059 6.830324 ACAGTCACCTAGTATCATACGGTAAA 59.170 38.462 0.00 0.00 0.00 2.01
1949 3065 8.773404 AAAAACACAGTCACCTAGTATCATAC 57.227 34.615 0.00 0.00 0.00 2.39
1962 3078 3.199677 CCACTACGGAAAAACACAGTCA 58.800 45.455 0.00 0.00 36.56 3.41
1963 3079 2.032290 GCCACTACGGAAAAACACAGTC 60.032 50.000 0.00 0.00 36.56 3.51
1989 3107 2.496899 AGCCACATCTCCGAAAATGT 57.503 45.000 0.00 0.00 36.56 2.71
2015 3133 2.030805 CACCCGCCAAAAAGAAGAAGAG 60.031 50.000 0.00 0.00 0.00 2.85
2035 3153 0.035152 CAACTAGCCACATCTGCCCA 60.035 55.000 0.00 0.00 0.00 5.36
2126 4300 0.329261 CCAAACCCTGCCTCTCATCA 59.671 55.000 0.00 0.00 0.00 3.07
2127 4301 0.620556 TCCAAACCCTGCCTCTCATC 59.379 55.000 0.00 0.00 0.00 2.92
2148 4322 1.061546 TTCTTTCCCCGCTACCACTT 58.938 50.000 0.00 0.00 0.00 3.16
2157 4331 3.198872 GCTCTGTAGATTTCTTTCCCCG 58.801 50.000 0.00 0.00 0.00 5.73
2185 4359 3.075283 ACTCTCCTCGGTATGATCCTGAT 59.925 47.826 0.00 0.00 0.00 2.90
2199 4373 4.516365 TTTCGGTTACTTCACTCTCCTC 57.484 45.455 0.00 0.00 0.00 3.71
2214 4388 3.011119 TGCGGCTAATATTGTTTTCGGT 58.989 40.909 0.00 0.00 0.00 4.69
2228 4402 5.768662 ACTACTAGTATGAGAAATGCGGCTA 59.231 40.000 2.33 0.00 0.00 3.93
2231 4405 5.147865 CGACTACTAGTATGAGAAATGCGG 58.852 45.833 2.33 0.00 0.00 5.69
2233 4407 5.764131 AGCGACTACTAGTATGAGAAATGC 58.236 41.667 2.33 0.34 0.00 3.56
2234 4408 7.197071 AGAGCGACTACTAGTATGAGAAATG 57.803 40.000 2.33 0.00 0.00 2.32
2235 4409 7.811117 AAGAGCGACTACTAGTATGAGAAAT 57.189 36.000 2.33 0.00 0.00 2.17
2241 4433 4.987285 TCCGTAAGAGCGACTACTAGTATG 59.013 45.833 2.33 0.74 43.02 2.39
2294 4486 4.828939 TCTTAATAAAGCCAGCCATGATGG 59.171 41.667 7.21 7.21 42.66 3.51
2295 4487 5.300034 TGTCTTAATAAAGCCAGCCATGATG 59.700 40.000 0.00 0.00 32.36 3.07
2296 4488 5.448654 TGTCTTAATAAAGCCAGCCATGAT 58.551 37.500 0.00 0.00 32.36 2.45
2297 4489 4.854173 TGTCTTAATAAAGCCAGCCATGA 58.146 39.130 0.00 0.00 32.36 3.07
2298 4490 5.581126 TTGTCTTAATAAAGCCAGCCATG 57.419 39.130 0.00 0.00 32.36 3.66
2299 4491 6.603940 TTTTGTCTTAATAAAGCCAGCCAT 57.396 33.333 0.00 0.00 32.36 4.40
2300 4492 6.412362 TTTTTGTCTTAATAAAGCCAGCCA 57.588 33.333 0.00 0.00 32.36 4.75
2321 4513 6.077838 GCTCGTAGATGATGTTTTCGTTTTT 58.922 36.000 0.00 0.00 33.89 1.94
2322 4514 5.618561 GCTCGTAGATGATGTTTTCGTTTT 58.381 37.500 0.00 0.00 33.89 2.43
2323 4515 4.201589 CGCTCGTAGATGATGTTTTCGTTT 60.202 41.667 0.00 0.00 33.89 3.60
2324 4516 3.303495 CGCTCGTAGATGATGTTTTCGTT 59.697 43.478 0.00 0.00 33.89 3.85
2325 4517 2.852413 CGCTCGTAGATGATGTTTTCGT 59.148 45.455 0.00 0.00 33.89 3.85
2326 4518 3.105937 TCGCTCGTAGATGATGTTTTCG 58.894 45.455 0.00 0.00 33.89 3.46
2327 4519 5.643339 ATTCGCTCGTAGATGATGTTTTC 57.357 39.130 0.00 0.00 33.89 2.29
2328 4520 5.580691 TGAATTCGCTCGTAGATGATGTTTT 59.419 36.000 0.04 0.00 33.89 2.43
2329 4521 5.005779 GTGAATTCGCTCGTAGATGATGTTT 59.994 40.000 11.80 0.00 33.89 2.83
2330 4522 4.504461 GTGAATTCGCTCGTAGATGATGTT 59.496 41.667 11.80 0.00 33.89 2.71
2331 4523 4.045104 GTGAATTCGCTCGTAGATGATGT 58.955 43.478 11.80 0.00 33.89 3.06
2332 4524 3.426859 GGTGAATTCGCTCGTAGATGATG 59.573 47.826 18.02 0.00 33.89 3.07
2333 4525 3.068165 TGGTGAATTCGCTCGTAGATGAT 59.932 43.478 18.02 0.00 33.89 2.45
2334 4526 2.425668 TGGTGAATTCGCTCGTAGATGA 59.574 45.455 18.02 0.00 33.89 2.92
2335 4527 2.535984 GTGGTGAATTCGCTCGTAGATG 59.464 50.000 18.02 0.00 33.89 2.90
2336 4528 2.165641 TGTGGTGAATTCGCTCGTAGAT 59.834 45.455 18.02 0.00 33.89 1.98
2337 4529 1.542472 TGTGGTGAATTCGCTCGTAGA 59.458 47.619 18.02 0.00 0.00 2.59
2338 4530 1.654105 GTGTGGTGAATTCGCTCGTAG 59.346 52.381 18.02 0.00 0.00 3.51
2339 4531 1.000052 TGTGTGGTGAATTCGCTCGTA 60.000 47.619 18.02 1.09 0.00 3.43
2340 4532 0.249699 TGTGTGGTGAATTCGCTCGT 60.250 50.000 18.02 0.00 0.00 4.18
2341 4533 0.865111 TTGTGTGGTGAATTCGCTCG 59.135 50.000 18.02 0.00 0.00 5.03
2342 4534 2.290641 AGTTTGTGTGGTGAATTCGCTC 59.709 45.455 18.02 12.02 0.00 5.03
2343 4535 2.033299 CAGTTTGTGTGGTGAATTCGCT 59.967 45.455 18.02 0.00 0.00 4.93
2344 4536 2.384382 CAGTTTGTGTGGTGAATTCGC 58.616 47.619 10.64 10.64 0.00 4.70
2345 4537 2.998772 CCAGTTTGTGTGGTGAATTCG 58.001 47.619 0.04 0.00 0.00 3.34
2354 4546 1.095228 ACGAGCCACCAGTTTGTGTG 61.095 55.000 0.00 0.00 34.35 3.82
2355 4547 0.814010 GACGAGCCACCAGTTTGTGT 60.814 55.000 0.00 0.00 34.35 3.72
2356 4548 1.507141 GGACGAGCCACCAGTTTGTG 61.507 60.000 0.00 0.00 36.34 3.33
2357 4549 1.227853 GGACGAGCCACCAGTTTGT 60.228 57.895 0.00 0.00 36.34 2.83
2358 4550 1.227823 TGGACGAGCCACCAGTTTG 60.228 57.895 0.00 0.00 43.33 2.93
2359 4551 3.236391 TGGACGAGCCACCAGTTT 58.764 55.556 0.00 0.00 43.33 2.66
2367 4559 0.818040 ACAAGTTGGTTGGACGAGCC 60.818 55.000 7.96 0.00 40.90 4.70
2368 4560 1.798813 CTACAAGTTGGTTGGACGAGC 59.201 52.381 7.96 0.00 40.90 5.03
2369 4561 3.380479 TCTACAAGTTGGTTGGACGAG 57.620 47.619 7.96 0.00 40.90 4.18
2370 4562 3.133362 ACTTCTACAAGTTGGTTGGACGA 59.867 43.478 7.96 0.00 40.16 4.20
2371 4563 3.463944 ACTTCTACAAGTTGGTTGGACG 58.536 45.455 7.96 0.00 40.16 4.79
2372 4564 4.704965 AGACTTCTACAAGTTGGTTGGAC 58.295 43.478 7.96 0.00 43.37 4.02
2373 4565 5.367945 AAGACTTCTACAAGTTGGTTGGA 57.632 39.130 7.96 0.00 43.37 3.53
2374 4566 7.745620 AATAAGACTTCTACAAGTTGGTTGG 57.254 36.000 7.96 0.00 43.37 3.77
2375 4567 9.268268 TGTAATAAGACTTCTACAAGTTGGTTG 57.732 33.333 7.96 0.00 43.37 3.77
2376 4568 9.841295 TTGTAATAAGACTTCTACAAGTTGGTT 57.159 29.630 7.96 0.00 43.37 3.67
2377 4569 9.841295 TTTGTAATAAGACTTCTACAAGTTGGT 57.159 29.630 16.43 0.00 43.37 3.67
2399 4591 9.410556 CATGTGCTAGCTAATTTTAGTTTTTGT 57.589 29.630 17.23 0.00 33.32 2.83
2400 4592 8.375465 GCATGTGCTAGCTAATTTTAGTTTTTG 58.625 33.333 17.23 0.00 38.21 2.44
2401 4593 7.273381 CGCATGTGCTAGCTAATTTTAGTTTTT 59.727 33.333 17.23 0.00 39.32 1.94
2402 4594 6.747280 CGCATGTGCTAGCTAATTTTAGTTTT 59.253 34.615 17.23 0.00 39.32 2.43
2403 4595 6.128007 ACGCATGTGCTAGCTAATTTTAGTTT 60.128 34.615 17.23 0.00 39.32 2.66
2404 4596 5.354234 ACGCATGTGCTAGCTAATTTTAGTT 59.646 36.000 17.23 0.00 39.32 2.24
2405 4597 4.876107 ACGCATGTGCTAGCTAATTTTAGT 59.124 37.500 17.23 4.08 39.32 2.24
2406 4598 5.006649 TGACGCATGTGCTAGCTAATTTTAG 59.993 40.000 17.23 3.45 39.32 1.85
2407 4599 4.873259 TGACGCATGTGCTAGCTAATTTTA 59.127 37.500 17.23 0.00 39.32 1.52
2408 4600 3.689161 TGACGCATGTGCTAGCTAATTTT 59.311 39.130 17.23 0.00 39.32 1.82
2409 4601 3.063997 GTGACGCATGTGCTAGCTAATTT 59.936 43.478 17.23 0.00 39.32 1.82
2410 4602 2.609459 GTGACGCATGTGCTAGCTAATT 59.391 45.455 17.23 0.00 39.32 1.40
2411 4603 2.159043 AGTGACGCATGTGCTAGCTAAT 60.159 45.455 17.23 6.59 39.32 1.73
2412 4604 1.204704 AGTGACGCATGTGCTAGCTAA 59.795 47.619 17.23 4.18 39.32 3.09
2413 4605 0.817654 AGTGACGCATGTGCTAGCTA 59.182 50.000 17.23 5.45 39.32 3.32
2414 4606 0.036952 AAGTGACGCATGTGCTAGCT 60.037 50.000 17.23 0.00 39.32 3.32
2415 4607 0.095935 CAAGTGACGCATGTGCTAGC 59.904 55.000 8.10 8.10 39.32 3.42
2416 4608 1.713597 TCAAGTGACGCATGTGCTAG 58.286 50.000 6.08 0.00 39.32 3.42
2417 4609 2.385013 ATCAAGTGACGCATGTGCTA 57.615 45.000 6.08 0.00 39.32 3.49
2418 4610 1.527034 AATCAAGTGACGCATGTGCT 58.473 45.000 6.08 0.00 39.32 4.40
2419 4611 2.789092 GCTAATCAAGTGACGCATGTGC 60.789 50.000 6.08 0.00 37.78 4.57
2420 4612 2.416202 TGCTAATCAAGTGACGCATGTG 59.584 45.455 4.30 4.30 0.00 3.21
2421 4613 2.674852 CTGCTAATCAAGTGACGCATGT 59.325 45.455 0.00 0.00 0.00 3.21
2422 4614 2.931969 TCTGCTAATCAAGTGACGCATG 59.068 45.455 0.00 0.00 0.00 4.06
2423 4615 3.251479 TCTGCTAATCAAGTGACGCAT 57.749 42.857 3.25 0.00 0.00 4.73
2424 4616 2.741759 TCTGCTAATCAAGTGACGCA 57.258 45.000 0.00 0.00 0.00 5.24
2425 4617 2.217393 CGATCTGCTAATCAAGTGACGC 59.783 50.000 0.00 0.00 0.00 5.19
2426 4618 3.695816 TCGATCTGCTAATCAAGTGACG 58.304 45.455 0.00 0.00 0.00 4.35
2427 4619 6.128553 TGTTTTCGATCTGCTAATCAAGTGAC 60.129 38.462 0.00 0.00 0.00 3.67
2428 4620 5.931724 TGTTTTCGATCTGCTAATCAAGTGA 59.068 36.000 0.00 0.00 0.00 3.41
2429 4621 6.169419 TGTTTTCGATCTGCTAATCAAGTG 57.831 37.500 0.00 0.00 0.00 3.16
2430 4622 6.801539 TTGTTTTCGATCTGCTAATCAAGT 57.198 33.333 0.00 0.00 0.00 3.16
2431 4623 6.195983 GCATTGTTTTCGATCTGCTAATCAAG 59.804 38.462 0.00 0.00 0.00 3.02
2432 4624 6.029607 GCATTGTTTTCGATCTGCTAATCAA 58.970 36.000 0.00 0.00 0.00 2.57
2433 4625 5.123661 TGCATTGTTTTCGATCTGCTAATCA 59.876 36.000 0.00 0.00 0.00 2.57
2434 4626 5.572211 TGCATTGTTTTCGATCTGCTAATC 58.428 37.500 0.00 0.00 0.00 1.75
2435 4627 5.565592 TGCATTGTTTTCGATCTGCTAAT 57.434 34.783 0.00 0.00 0.00 1.73
2436 4628 5.565592 ATGCATTGTTTTCGATCTGCTAA 57.434 34.783 0.00 0.00 0.00 3.09
2437 4629 6.866010 ATATGCATTGTTTTCGATCTGCTA 57.134 33.333 3.54 0.00 0.00 3.49
2438 4630 5.762825 ATATGCATTGTTTTCGATCTGCT 57.237 34.783 3.54 0.00 0.00 4.24
2439 4631 8.422457 CAATTATATGCATTGTTTTCGATCTGC 58.578 33.333 3.54 0.00 0.00 4.26
2440 4632 9.667989 TCAATTATATGCATTGTTTTCGATCTG 57.332 29.630 3.54 0.00 33.91 2.90
2441 4633 9.669353 GTCAATTATATGCATTGTTTTCGATCT 57.331 29.630 3.54 0.00 33.91 2.75
2442 4634 8.905702 GGTCAATTATATGCATTGTTTTCGATC 58.094 33.333 3.54 0.00 33.91 3.69
2443 4635 8.632679 AGGTCAATTATATGCATTGTTTTCGAT 58.367 29.630 3.54 0.00 33.91 3.59
2444 4636 7.995289 AGGTCAATTATATGCATTGTTTTCGA 58.005 30.769 3.54 0.00 33.91 3.71
2445 4637 8.633075 AAGGTCAATTATATGCATTGTTTTCG 57.367 30.769 3.54 0.00 33.91 3.46
2446 4638 9.034544 GGAAGGTCAATTATATGCATTGTTTTC 57.965 33.333 3.54 3.94 33.91 2.29
2447 4639 7.986889 GGGAAGGTCAATTATATGCATTGTTTT 59.013 33.333 3.54 0.00 33.91 2.43
2448 4640 7.125507 TGGGAAGGTCAATTATATGCATTGTTT 59.874 33.333 3.54 0.00 33.91 2.83
2449 4641 6.610830 TGGGAAGGTCAATTATATGCATTGTT 59.389 34.615 3.54 0.00 33.91 2.83
2450 4642 6.135454 TGGGAAGGTCAATTATATGCATTGT 58.865 36.000 3.54 0.00 33.91 2.71
2451 4643 6.653526 TGGGAAGGTCAATTATATGCATTG 57.346 37.500 3.54 0.00 33.55 2.82
2452 4644 7.860649 ATTGGGAAGGTCAATTATATGCATT 57.139 32.000 3.54 0.00 31.49 3.56
2453 4645 7.510001 TCAATTGGGAAGGTCAATTATATGCAT 59.490 33.333 3.79 3.79 41.28 3.96
2454 4646 6.838090 TCAATTGGGAAGGTCAATTATATGCA 59.162 34.615 5.42 0.00 41.28 3.96
2455 4647 7.288810 TCAATTGGGAAGGTCAATTATATGC 57.711 36.000 5.42 0.00 41.28 3.14
2458 4650 9.793259 GAGTATCAATTGGGAAGGTCAATTATA 57.207 33.333 5.42 0.00 41.28 0.98
2459 4651 7.725844 GGAGTATCAATTGGGAAGGTCAATTAT 59.274 37.037 5.42 0.00 41.28 1.28
2460 4652 7.060421 GGAGTATCAATTGGGAAGGTCAATTA 58.940 38.462 5.42 0.00 41.28 1.40
2461 4653 5.893824 GGAGTATCAATTGGGAAGGTCAATT 59.106 40.000 5.42 0.00 43.21 2.32
2462 4654 5.044179 TGGAGTATCAATTGGGAAGGTCAAT 60.044 40.000 5.42 0.00 36.25 2.57
2463 4655 4.290985 TGGAGTATCAATTGGGAAGGTCAA 59.709 41.667 5.42 0.00 36.25 3.18
2464 4656 3.849574 TGGAGTATCAATTGGGAAGGTCA 59.150 43.478 5.42 0.00 36.25 4.02
2465 4657 4.503714 TGGAGTATCAATTGGGAAGGTC 57.496 45.455 5.42 0.00 36.25 3.85
2466 4658 4.946160 TTGGAGTATCAATTGGGAAGGT 57.054 40.909 5.42 0.00 36.25 3.50
2467 4659 5.203528 ACATTGGAGTATCAATTGGGAAGG 58.796 41.667 5.42 0.00 35.40 3.46
2468 4660 5.887598 TGACATTGGAGTATCAATTGGGAAG 59.112 40.000 5.42 0.00 35.40 3.46
2469 4661 5.825532 TGACATTGGAGTATCAATTGGGAA 58.174 37.500 5.42 0.00 35.40 3.97
2470 4662 5.449297 TGACATTGGAGTATCAATTGGGA 57.551 39.130 5.42 0.00 35.40 4.37
2471 4663 5.418524 TGTTGACATTGGAGTATCAATTGGG 59.581 40.000 5.42 0.00 35.40 4.12
2472 4664 6.072008 TGTGTTGACATTGGAGTATCAATTGG 60.072 38.462 5.42 0.00 35.40 3.16
2473 4665 6.912082 TGTGTTGACATTGGAGTATCAATTG 58.088 36.000 0.00 0.00 35.40 2.32
2474 4666 7.707624 ATGTGTTGACATTGGAGTATCAATT 57.292 32.000 0.00 0.00 40.05 2.32
2487 4679 6.145371 GCAATTTTTACGGAATGTGTTGACAT 59.855 34.615 0.00 0.00 45.24 3.06
2488 4680 5.460419 GCAATTTTTACGGAATGTGTTGACA 59.540 36.000 0.00 0.00 36.22 3.58
2489 4681 5.460419 TGCAATTTTTACGGAATGTGTTGAC 59.540 36.000 0.00 0.00 0.00 3.18
2490 4682 5.592054 TGCAATTTTTACGGAATGTGTTGA 58.408 33.333 0.00 0.00 0.00 3.18
2491 4683 5.612276 GCTGCAATTTTTACGGAATGTGTTG 60.612 40.000 0.00 0.00 0.00 3.33
2492 4684 4.447389 GCTGCAATTTTTACGGAATGTGTT 59.553 37.500 0.00 0.00 0.00 3.32
2493 4685 3.987220 GCTGCAATTTTTACGGAATGTGT 59.013 39.130 0.00 0.00 0.00 3.72
2494 4686 3.367630 GGCTGCAATTTTTACGGAATGTG 59.632 43.478 0.50 0.00 0.00 3.21
2495 4687 3.584834 GGCTGCAATTTTTACGGAATGT 58.415 40.909 0.50 0.00 0.00 2.71
2496 4688 2.598192 CGGCTGCAATTTTTACGGAATG 59.402 45.455 0.50 0.00 0.00 2.67
2497 4689 2.874849 CGGCTGCAATTTTTACGGAAT 58.125 42.857 0.50 0.00 0.00 3.01
2498 4690 1.667467 GCGGCTGCAATTTTTACGGAA 60.667 47.619 14.08 0.00 42.15 4.30
2499 4691 0.109504 GCGGCTGCAATTTTTACGGA 60.110 50.000 14.08 0.00 42.15 4.69
2500 4692 1.402479 CGCGGCTGCAATTTTTACGG 61.402 55.000 19.50 0.00 42.97 4.02
2501 4693 1.402479 CCGCGGCTGCAATTTTTACG 61.402 55.000 14.67 0.00 42.97 3.18
2502 4694 1.075979 CCCGCGGCTGCAATTTTTAC 61.076 55.000 22.85 0.00 42.97 2.01
2503 4695 1.214062 CCCGCGGCTGCAATTTTTA 59.786 52.632 22.85 0.00 42.97 1.52
2504 4696 1.887344 ATCCCGCGGCTGCAATTTTT 61.887 50.000 22.85 0.00 42.97 1.94
2505 4697 2.283472 GATCCCGCGGCTGCAATTTT 62.283 55.000 22.85 0.00 42.97 1.82
2506 4698 2.755469 ATCCCGCGGCTGCAATTT 60.755 55.556 22.85 0.00 42.97 1.82
2507 4699 3.211963 GATCCCGCGGCTGCAATT 61.212 61.111 22.85 0.00 42.97 2.32
2515 4707 4.935495 CATGGTGGGATCCCGCGG 62.935 72.222 33.02 21.04 46.85 6.46
2516 4708 2.111999 ATACATGGTGGGATCCCGCG 62.112 60.000 33.02 23.42 46.85 6.46
2517 4709 0.110486 AATACATGGTGGGATCCCGC 59.890 55.000 32.89 32.89 45.29 6.13
2518 4710 3.009033 ACATAATACATGGTGGGATCCCG 59.991 47.826 26.03 13.47 39.42 5.14
2519 4711 4.567747 GGACATAATACATGGTGGGATCCC 60.568 50.000 25.22 25.22 0.00 3.85
2520 4712 4.567747 GGGACATAATACATGGTGGGATCC 60.568 50.000 1.92 1.92 0.00 3.36
2521 4713 4.589908 GGGACATAATACATGGTGGGATC 58.410 47.826 0.00 0.00 0.00 3.36
2522 4714 3.009033 CGGGACATAATACATGGTGGGAT 59.991 47.826 0.00 0.00 0.00 3.85
2523 4715 2.370519 CGGGACATAATACATGGTGGGA 59.629 50.000 0.00 0.00 0.00 4.37
2524 4716 2.105821 ACGGGACATAATACATGGTGGG 59.894 50.000 0.00 0.00 0.00 4.61
2525 4717 3.485463 ACGGGACATAATACATGGTGG 57.515 47.619 0.00 0.00 0.00 4.61
2526 4718 4.951254 TGTACGGGACATAATACATGGTG 58.049 43.478 0.00 0.00 31.20 4.17
2527 4719 4.897076 TCTGTACGGGACATAATACATGGT 59.103 41.667 0.85 0.00 37.45 3.55
2528 4720 5.462530 TCTGTACGGGACATAATACATGG 57.537 43.478 0.85 0.00 37.45 3.66
2529 4721 7.962964 ATTTCTGTACGGGACATAATACATG 57.037 36.000 0.85 0.00 37.45 3.21
2535 4727 9.328845 GGTTATTAATTTCTGTACGGGACATAA 57.671 33.333 0.85 0.00 37.45 1.90
2536 4728 8.707449 AGGTTATTAATTTCTGTACGGGACATA 58.293 33.333 0.85 0.00 37.45 2.29
2537 4729 7.571025 AGGTTATTAATTTCTGTACGGGACAT 58.429 34.615 0.85 0.00 37.45 3.06
2538 4730 6.949715 AGGTTATTAATTTCTGTACGGGACA 58.050 36.000 0.85 0.00 36.35 4.02
2539 4731 6.481313 GGAGGTTATTAATTTCTGTACGGGAC 59.519 42.308 0.85 0.00 0.00 4.46
2540 4732 6.384886 AGGAGGTTATTAATTTCTGTACGGGA 59.615 38.462 0.85 0.00 0.00 5.14
2541 4733 6.482308 CAGGAGGTTATTAATTTCTGTACGGG 59.518 42.308 0.85 0.00 0.00 5.28
2542 4734 7.011109 CACAGGAGGTTATTAATTTCTGTACGG 59.989 40.741 0.00 0.00 33.58 4.02
2543 4735 7.762615 TCACAGGAGGTTATTAATTTCTGTACG 59.237 37.037 0.00 0.00 33.58 3.67
2544 4736 9.099454 CTCACAGGAGGTTATTAATTTCTGTAC 57.901 37.037 0.00 0.00 37.51 2.90
2545 4737 8.822805 ACTCACAGGAGGTTATTAATTTCTGTA 58.177 33.333 0.00 0.00 45.81 2.74
2546 4738 7.690256 ACTCACAGGAGGTTATTAATTTCTGT 58.310 34.615 0.00 0.00 45.81 3.41
2547 4739 8.043710 AGACTCACAGGAGGTTATTAATTTCTG 58.956 37.037 0.00 0.00 45.81 3.02
2548 4740 8.043710 CAGACTCACAGGAGGTTATTAATTTCT 58.956 37.037 0.00 0.00 45.81 2.52
2549 4741 8.041323 TCAGACTCACAGGAGGTTATTAATTTC 58.959 37.037 0.00 0.00 45.81 2.17
2550 4742 7.918076 TCAGACTCACAGGAGGTTATTAATTT 58.082 34.615 0.00 0.00 45.81 1.82
2551 4743 7.496346 TCAGACTCACAGGAGGTTATTAATT 57.504 36.000 0.00 0.00 45.81 1.40
2552 4744 7.682787 ATCAGACTCACAGGAGGTTATTAAT 57.317 36.000 0.00 0.00 45.81 1.40
2553 4745 7.496346 AATCAGACTCACAGGAGGTTATTAA 57.504 36.000 0.00 0.00 45.81 1.40
2554 4746 7.496346 AAATCAGACTCACAGGAGGTTATTA 57.504 36.000 0.00 0.00 45.81 0.98
2555 4747 6.380079 AAATCAGACTCACAGGAGGTTATT 57.620 37.500 0.00 0.00 45.81 1.40
2556 4748 6.407525 GCTAAATCAGACTCACAGGAGGTTAT 60.408 42.308 0.00 0.00 45.81 1.89
2557 4749 5.105310 GCTAAATCAGACTCACAGGAGGTTA 60.105 44.000 0.00 0.00 45.81 2.85
2558 4750 4.323104 GCTAAATCAGACTCACAGGAGGTT 60.323 45.833 0.00 0.00 45.81 3.50
2559 4751 3.196685 GCTAAATCAGACTCACAGGAGGT 59.803 47.826 0.00 0.00 45.81 3.85
2560 4752 3.431486 GGCTAAATCAGACTCACAGGAGG 60.431 52.174 0.00 0.00 45.81 4.30
2561 4753 3.450457 AGGCTAAATCAGACTCACAGGAG 59.550 47.826 0.00 0.00 38.86 3.69
2562 4754 3.445008 AGGCTAAATCAGACTCACAGGA 58.555 45.455 0.00 0.00 38.86 3.86
2563 4755 3.902881 AGGCTAAATCAGACTCACAGG 57.097 47.619 0.00 0.00 38.86 4.00
2570 4762 2.186076 CGTGTCGAGGCTAAATCAGAC 58.814 52.381 0.00 0.00 0.00 3.51
2571 4763 1.134367 CCGTGTCGAGGCTAAATCAGA 59.866 52.381 0.00 0.00 0.00 3.27
2572 4764 1.135083 ACCGTGTCGAGGCTAAATCAG 60.135 52.381 0.00 0.00 0.00 2.90
2573 4765 0.892755 ACCGTGTCGAGGCTAAATCA 59.107 50.000 0.00 0.00 0.00 2.57
2574 4766 1.278238 CACCGTGTCGAGGCTAAATC 58.722 55.000 0.00 0.00 0.00 2.17
2575 4767 0.108329 CCACCGTGTCGAGGCTAAAT 60.108 55.000 0.00 0.00 0.00 1.40
2576 4768 1.180456 TCCACCGTGTCGAGGCTAAA 61.180 55.000 0.00 0.00 0.00 1.85
2577 4769 1.180456 TTCCACCGTGTCGAGGCTAA 61.180 55.000 0.00 0.00 0.00 3.09
2578 4770 0.968901 ATTCCACCGTGTCGAGGCTA 60.969 55.000 0.00 0.00 0.00 3.93
2579 4771 2.227089 GATTCCACCGTGTCGAGGCT 62.227 60.000 0.00 0.00 0.00 4.58
2580 4772 1.810030 GATTCCACCGTGTCGAGGC 60.810 63.158 0.00 0.00 0.00 4.70
2581 4773 1.153628 GGATTCCACCGTGTCGAGG 60.154 63.158 0.00 0.00 0.00 4.63
2582 4774 1.153628 GGGATTCCACCGTGTCGAG 60.154 63.158 4.80 0.00 0.00 4.04
2583 4775 1.473497 TTGGGATTCCACCGTGTCGA 61.473 55.000 4.80 0.00 43.94 4.20
2584 4776 1.004320 TTGGGATTCCACCGTGTCG 60.004 57.895 4.80 0.00 43.94 4.35
2585 4777 0.676782 CCTTGGGATTCCACCGTGTC 60.677 60.000 4.80 0.00 43.94 3.67
2586 4778 1.131303 TCCTTGGGATTCCACCGTGT 61.131 55.000 4.80 0.00 43.94 4.49
2587 4779 0.392998 CTCCTTGGGATTCCACCGTG 60.393 60.000 4.80 0.00 43.94 4.94
2588 4780 0.840722 ACTCCTTGGGATTCCACCGT 60.841 55.000 4.80 0.00 43.94 4.83
2589 4781 0.328258 AACTCCTTGGGATTCCACCG 59.672 55.000 4.80 0.00 43.94 4.94
2590 4782 1.616994 CCAACTCCTTGGGATTCCACC 60.617 57.143 4.80 0.00 43.94 4.61
2591 4783 1.839424 CCAACTCCTTGGGATTCCAC 58.161 55.000 4.80 0.00 43.94 4.02
2592 4784 0.039618 GCCAACTCCTTGGGATTCCA 59.960 55.000 4.80 0.00 46.58 3.53
2593 4785 0.039618 TGCCAACTCCTTGGGATTCC 59.960 55.000 1.76 0.00 46.58 3.01
2594 4786 1.923356 TTGCCAACTCCTTGGGATTC 58.077 50.000 1.76 0.00 46.48 2.52
2595 4787 1.970640 GTTTGCCAACTCCTTGGGATT 59.029 47.619 1.76 0.00 46.48 3.01
2596 4788 1.632589 GTTTGCCAACTCCTTGGGAT 58.367 50.000 1.76 0.00 46.48 3.85
2597 4789 0.469144 GGTTTGCCAACTCCTTGGGA 60.469 55.000 0.17 0.00 46.58 4.37
2598 4790 1.471829 GGGTTTGCCAACTCCTTGGG 61.472 60.000 0.17 0.00 46.58 4.12
2600 4792 2.162681 CTAGGGTTTGCCAACTCCTTG 58.837 52.381 13.45 9.40 33.18 3.61
2601 4793 2.062636 TCTAGGGTTTGCCAACTCCTT 58.937 47.619 13.45 0.00 33.18 3.36
2602 4794 1.351350 GTCTAGGGTTTGCCAACTCCT 59.649 52.381 12.98 12.98 33.18 3.69
2603 4795 1.613520 GGTCTAGGGTTTGCCAACTCC 60.614 57.143 0.00 0.00 33.18 3.85
2604 4796 1.073284 TGGTCTAGGGTTTGCCAACTC 59.927 52.381 0.17 0.00 36.17 3.01
2605 4797 1.145571 TGGTCTAGGGTTTGCCAACT 58.854 50.000 0.17 0.00 36.17 3.16
2606 4798 2.092323 GATGGTCTAGGGTTTGCCAAC 58.908 52.381 0.00 0.00 36.17 3.77
2607 4799 1.992557 AGATGGTCTAGGGTTTGCCAA 59.007 47.619 0.00 0.00 36.17 4.52
2608 4800 1.559682 GAGATGGTCTAGGGTTTGCCA 59.440 52.381 0.00 0.00 36.17 4.92
2609 4801 1.840635 AGAGATGGTCTAGGGTTTGCC 59.159 52.381 0.00 0.00 31.71 4.52
2610 4802 2.501723 TGAGAGATGGTCTAGGGTTTGC 59.498 50.000 0.00 0.00 34.71 3.68
2611 4803 4.500545 CGATGAGAGATGGTCTAGGGTTTG 60.501 50.000 0.00 0.00 34.71 2.93
2612 4804 3.639094 CGATGAGAGATGGTCTAGGGTTT 59.361 47.826 0.00 0.00 34.71 3.27
2613 4805 3.226777 CGATGAGAGATGGTCTAGGGTT 58.773 50.000 0.00 0.00 34.71 4.11
2614 4806 2.175931 ACGATGAGAGATGGTCTAGGGT 59.824 50.000 0.00 0.00 34.71 4.34
2615 4807 2.817258 GACGATGAGAGATGGTCTAGGG 59.183 54.545 0.00 0.00 34.71 3.53
2616 4808 3.481453 TGACGATGAGAGATGGTCTAGG 58.519 50.000 0.00 0.00 34.71 3.02
2617 4809 5.703978 AATGACGATGAGAGATGGTCTAG 57.296 43.478 0.00 0.00 34.71 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.