>input_sequence_73183
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----------------------------------------------------------------------------GTCT
CACACCCG--CCGCTCAGCCGT---AACTTCAC-AAAGATGCTGAGGTCCACCGGCCGCCTTCTGCTGCTCGCGCTAGCG
GCGAGCCACCTGCTGCTCACCGCCGCCGGCGCTGGCTGCGAGCCGAGCGGCACGCTCCGGCCGACCCAGAGCCACGCGTG
CCAGGACTGCTGCAAGGCCGGGCAGGCGTACCCGACGTACAGGTGCTCGCCGCCGGTCTCCTCGTCCACCCGGGCGGTCA
TGACTCTGAACGACTTCGACGCGGGCGGCGACGGCGGGGACCCGTCCGAGTGCGACGGCGCGTTCCACCGCAGCTCGGAG
CGCGTGGCGGCGCTGTCCACGGGGTGGTACAGCGGGGGCTCCCGCTGCGGCAAGAGCATACGGATCCGGGCCAACGGCAG
GTCCGTGCTCGCCAAGGTCGTCGACGAGTGCGACACCGTGAACGGGTGCGACCGCGAGCACGCCTTCCAGCCGCCGTGCC
GCAACAACGTCGTCGACGCCTCCCAGGCGGTCTGGGACGCGCTGGGCATCACCGGGGAGGAGGTCGGCGAGTACAACGTC
ACTTGGTCAGATGCATGACCTATATAT----------------------------G-TGCATGGACGAATAGAGTGTACA
CGCGGACCCAAAATGAATAAACGGAATTTAT-------------------------------------------------
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>chr5D_1_TraesCS5D01G242300
TTATTTCTTGGTGTTGTTCACTGACAGGTGGGACCCAACGACCAACTAGTCTATTCCATCGATGCAAGCGGGCCCCTCAC
CATGTGGGCATGGCAACATAAATATGATGCCACACCATCACATTTAACGTCTGTATTAGACCCGCGTGCCAAGATTTTGA
ACCACTTTTCTGTAGTGTAAAACTACAAGCACCATAGTGATCCTCCATGAAAAGTTCAAGCGCCAATGCTGCATTTACCT
CTATGAAAGTTAATCTTGAGGAGTGAGGCGTTCTGGCTCCCAGGAGCATCTGCAGCTGCGTTGAATAAAAAAATTAAAAC
AAATACTAGAAAAATTCAAAAAAAATCTAATTTTTTGGGCATGGTAGATAATTTGGTGCGTGATGTTCGGTCCAAATTTA
ATCATTTGCTGAG-------------------------------------------------------------------
---------------------------AGCTACTCAAATGTCCAAATGCTCTGAAATTTGGAGCGCACCTCACACACCAA
ATTATCTATCATGCTCTGTTTTGACCCAATTTTCTTGACCGGGTGTAGATGATCCCGGGCTCAGAATTGGATATTCGAAT
CTTAAGGCCTAATAATTGTTGAAAAGATGTTTGGACGGTGTTCGATGAAGATGATGGTGCCGTCCGCAACGGTGTTAGAG
AGAGGCGACACGGT----ATGGATGTCATGCCACGAGGTGCCCGTAGCAGGACGGCACGTCTAGCATTTACGACAGGCTT
CCCTATTTCGGCTACTATTGCT--------ACGCATCTTCTTGACATTTCCATGTCGCGTCGCCATCTACGTACTGTCCT
CCCCTCACTCCTTCGCCGCCTCAGTTTGACTTTTGAGGCATTTTCTTTGCGATCGCAAGGACAAAAGCCTGAGGTTCGTC
CACGAATCCTCACCCTCAACCGCAGCACATGCAATGCAGGAT----CACACGGGACGAAATACGAGTCGCAAACAAACAC
CGGAGCACGCGCACTGGACGAACACGCCGCCTGCCTATATATAGAGAGCTGGCCACTGCACACTCTCAC------AGTCT
CACACCCG--CCGCTCAGCCGT---AACTTCAC-AAAGATGCTGAGGTCCACCGGCCGCCTTCTGCTGCTCGCGCTAGCG
GCGAGCCACCTGCTGCTCACCGCCGCCGGCGCTGGCTGCGAGCCGAGCGGCACGCTCCGGCCGACCCAGAGCCACGCGTG
CCAGGACTGCTGCAAGGCCGGGCAGGCGTACCCGACGTACAGGTGCTCGCCGCCGGTCTCCTCGTCCACCCGGGCGGTCA
TGACTCTGAACGACTTCGACGCGGGCGGCGACGGCGGGGACCCGTCCGAGTGCGACGGCGCGTTCCACCGCAGCTCGGAG
CGCGTGGCGGCGCTGTCCACGGGGTGGTACAGCGGGGGCTCCCGCTGCGGCAAGAGCATACGGATCCGGGCCAACGGCAG
GTCCGTGCTCGCCAAGGTCGTCGACGAGTGCGACACCGTGAACGGGTGCGACCGCGAGCACGCCTTCCAGCCGCCGTGCC
GCAACAACGTCGTCGACGCCTCCCAGGCGGTCTGGGACGCGCTGGGCATCACCGGGGAGGAGGTCGGCGAGTACAACGTC
ACTTGGTCAGATGCATGACCTATATAT----------------------------G-TGCATGGACGAATAGAGTGTACA
CGCGGACCCAAAATGAATAAACGGAATTTATAAGGGCCGCCTATTTAACAG-----------------------------
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----------------------------GGCATCTGAATTTTCTTTTGGCTTAAGTCGATTTTCCCAGCCATCCAACGAG
CCGTTAGCGGGCT-----------ACGTGGCAGGTACGCTTTGCCCTG----------------GAGTGCTTTGCCGAGC
CAACTTCGGCTTATCGGAGTGTACGCCGTGTGCGCTGTTTAAGCTGAAAATGCCTGAACGCGGTGTTCACGGCGTACACG
TAGGTAAGCCGAGTACCACCTGTTTGTGGTGTGCCATCATGGGCATACTCGGGTTAGGTGCAGATAAGTCGTAAATTAAC
CCGTGTTTCAGCACTCGGTTTACCGTATGATACTAGGTGAC-TGTGTTTTTCC-GTAGTGGCTGCAACATTTTCGGAGAT
GTGGCTAGTTTTCTCTTCTTCTTTTTGGCGGGTGGGCAGATGTGGCT---------------------------------
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---------------------------------------------------------AGTTGCGGCCTAGGCGTGGCAAA
ATGTTAAAGGGTG------GAGGTGGGGCGTTTCATTTTTGACCGCCAGTGAGATCTCTTGATGAGAGGCAGGGTTTGGA
GAAGTGGTAGCGGGGAAAGAAATCTACAGAGCCGTTGGATCAGGATCATACCGAGGAGAGTGAAGTAACCGAAAACAATA
TTAGCCGCA------------------TTTCTCATACTAGTAGTCGCTCTTACGGAGGAGAGAGTGCAGTTTTTTTAAAG
AAAGGCCATCATGGCTGGCTTTATTAAGACAAAAAAACGAAAACATCATCTACGAGCGAATTCACCACACAAACTGGTGG
CTCGTCCAACCAACTTGTAGAAGTCTTATTACAAAAACTAAAATTAGCTAGCACATGCGTCACTTGATTAGCAGATCGAA
AACAATGCATATAATTGACCTTCCCAATTGATACTCCAATGTCAACACATTCCGTAAAAATTGCAGCCGCGGGATCCCAC
CATGTATTATGTCCCGTACAGAAATTAATAACCTCCTGTGAGTCTGATTTAGCCTCGACACGGTGGAATCCCAAGGAGTT
GGCAAACCCTAGACCATCTCTCATCGTCATT
>chr5B_1
TTATTTCTTGGTGTTGTTCACTGACAGATGGGACCCAACGACCAACCAGTCTATTCCGTCGCTGTAAGCAGGCCCCTCAC
CATGTGGGCATGGCAACATAAATATGATGCCACACCATCACATTTAACGTCTGTATTAGACTCGCGTGCCAAGATTTTGA
ACCACTTTTCTGTAGTGTAAAACTACAAGCACCAAAGTGATCCTCCTTGAAAAGTTCAAGCCCCAATGCTGCATTTACCT
CTATGAAAGTTAATCTAGAGGAGTGAGGCGTTCTGGCTTCCAGGAACATCTGCAGCTGCGTTGAATAAAAAAATCAAAAT
AAATACTAGAAATTTCTTT-AAAAATCTATTTTTTTTGGCATGATAGATAATTTGGTGTGTGATGTGCGGTCCAAATTTA
ATCATTTGGACATCTGAGTAGTTCTCGGTAAAAAAGGCAAATTTGAGGTCTGTTAAACAGTGTACTATTCATATACTGTT
TTGATCCAATTTGTCTTTTTTTGCTGAAGCTACTCAAATGTCCAAATGCTCTGAAATTTGAAGCGCACCTCACGCACCAA
ATTATCTATCATGCTCTGTTTTGACCCAATTTTCTTGACAGGGTGTAGATGAGCCCGAGCTCAGAATTGAATATTCGAAT
CTTGA-GCCTAATAATTGTTGAAAAGATGTTTGGACGGTGTTCGATGAAGATGATGGTGCCGTCCGCAACGGTGTTAGAT
AGAGGCGACACGGT----ATGGATGTCATGCCACGAGGTGCCCGTAGCAGGACGGCACGTCTAGCATTTACGACAGGCTT
CCCTATTTCGGCTACTATTGCT--------ACGCATCTTCTTGACATTTCCATGTCGCGTCGCCATCTACGTACTGTCCT
CCCCTCACTCCTTCGCCGCCTTAGTTTGACTTTTGAGGCATTTTCTTTGCGATCGCAAGGACAAAAGCCTGAGGTTCGTC
CACGAATCCTCACCCTCA-CCGCAGCACATGCAATGCAAGATCACACACACGGGACGAAATACGAGTCGCAAACAAGCAC
CGGAGCACGCGCACTGGACGAACACGCTGCCTGCCTATATATAGAGAGTTGGCCACTGCACACTCTCAC------AGTCT
CACACCCG--CCGCTTGGCCAT---AACTTCACAAAAGATGCTGAGGTCCACCAGTGGCCTTCTGCTGCTCGCGATAGCG
GCGAGCCACCTGCTGCTCGCCGCCGCCGGCGCTGGCTGCGGGCCGAGCGGTACGCTCCGGCCGACCCAGAGCCACGCGTG
CCAGGACTGCTGCAAGGCCGGGCAGGCGTACCCGACGTACAGGTGCTCGCCGCCGGTCTCCTCGTCCACCCGGGCGGTCA
TGACGCTGAACGACTTCGACGAGGGCGGCGACGGCGGGGACCCGTCCGAGTGCGACGGCGCGTTCCACCGCAGCTCGGAG
CGCGTGGTGGCGCTGTCCACGGGGTGGTACAGCGGGGGCTCCCGCTGCGGCAAGAACATACGGATCCGGGCCAACGGCAG
GTCCGTGCTGGCCAAGGTCGTCGACGAGTGCGACACCGTGAACGGGTGCGACCGCGAGCACGCCTTCCAGCCGCCGTGCC
GCAACAACGTCGTCGACGCCTCCCAGGCGGTCTGGGATGCGCTGGGCATCACCGGGGAGGAGGTCGGCGAGTACAACATC
ACTTGGTCGGATGCATGACCTACTCGTGGCGGCTGGCGGGACTAGCTGATGTAAGG-TGTATGGACGAATAAAGTGCGCG
TCCGAACTCAAAAGGAATAAACGGATCGAAGATGGTGCATGGTACAGTTTGTACGTAATTTATATGTTACGGGCTGAGGT
GGAACTATACCTGGCCATCTGTCGGGCCGGGCCTACCAAAACCCGACGCAGAAAACCTAGGCCCGAGCCCATCCTGCCCG
GCCATCGGGCCTAAAAATCAGGCCCAAGCCCGATCCATTAGTCAAAAAGCCCGTCAAGCCTTGGGCCGGGCCTCTTCTTT
AAACAGCAAATACGACGAGCCTGGTACGGCTATCGGGCTCAAAATCTAGGCCCAGGACCGACCCATGGGCAAGGTCAGGC
CGTCCGGGCCGGGTTGCCCATGGCCAAGATTAGTGGCTGGGCCCCACCCCAGTTAAATTCGGGAAGGAAGGGGGAGGAGA
ATAGAGTTTATGGAAGGTTAAGTAGATTGTTCGGAGGCTCTCCGTAGGTATAGAATTTTTGGTCCCAAGCCGTATAGCCA
GGCGGCAGGCGCTGCTCTTACCTTTATCCGAGTCTTGATTGCGGCTATCTTGCTCAGCACAGTGGTTAATTGGAATGAAA
TTTCCAAGTTTAAAAATAAATAAATGAGGCATCTGAATTTCATTTTGGCTTAAGTAGTTTTTTAACGTAATACAGGCAAG
CACTCATATATACGCACATACACTCACTTCTAAGAATGAACACGCGCGCACTCTATCCCTATGAGTAGCCCCGAGAGACT
CAGCCGTCATATCATCTTGAGATTTACGAAGTCACCGTAGGTGCATCGTAGTCGATGGGAACGTCTCCCCCACTAAATGC
GTATCGCCGAAAATACCGAAATAAATTCAGGAAAATGCGAGCAACAGGACTTGAACGCTGATGGACTCGGGATACCACTG
TCCTTCTAACCATCCAACGGTTGGGCGTCGAAGAGTTTTCCTCGGCTATCTTGCTCAGCACAGTGGTTAATTGGAATGAA
ATTTCCAAGTTCAAAAATAAATAAATTAGGCATCTGAATTTTCTTTTGGCTTAAGTCGTTTTT-----------------
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>chr5A_609
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--------------------------------------------------------------TCCGCAACGGTGTTAGAG
AG--GCGACACGGGAGGGATGGATGTCATGCCATGAGGTGCCCGTAGCAGGACGGCGCGTCTAGCATTTATAACAGGCTC
CCCTATTTCGGCTGCTATTGCTACGCATGAACGCATCTCCTTGACATTTCCATGTCGCATCGCCATCCCTGTACTGTCCT
CTTCTCGCTCCTTCGCCGCCTCAGCTTGACTTTTGAGGCATTTTCTCTGCGATCGCGTGAAGAAAGCCA----GTTCGTT
CACGAATCCTCATCCTCAACCGCAGCACATGCAAGG-----T----CACACGGGACGAAATACGAGTCGCAAACAAGCGC
CGGAGCACGCGCACTGGACGAACACGCTGCCTGCCTATA--TAGAGAGCTGGCCACTGCACACTCTCACTCTCAGAGTCT
CACACCCACACCGCTCGGCCATCAAAACTTCAC-AAAGATGCCGAGGTCCACCAGCCGCCTCCTTCTGCTCGCGCTAGCG
GCGAGCCACCTGCTGCTCGCCGGCGCCGGCGCCGGCTGCGGGCCGAGCGGCACGCTCCGGCCGAGCCGGGGCCACTCGTG
CGAGGACTGCTGCAAGGCCGGGCAGGCGTACCCGACGTACACGTGCTCGCCGCCGGTCTCCTCGTCCACCCGGGCGGTCA
TGACGTTGAACGACTTCGACGCGGGCGGCGACGGCGGGGACCCGTCGGAGTGCGACGGCGCGTTCCACCACAACTCGGAG
CGCGTGGTGGCGCTGTCCACGGGGTGGTACAGCGGGGGCTCCCGCTGCGGCAAGAGCATACGGATCCGGGCCAACGGCAG
GTCCGTGCTGGCCAAGGTCGTCGACGAGTGCGACACCGTCAACGGGTGCGACCGCGAGCACGCCTTCCAGCCGCCGTGCC
GCAACAACGTCGTGGACGCCTCCCAGGCGGTCTGGGACGCGCTGGGCATCACCGGGGAGGAGGTCGGCGAGTACAACGTC
ACTTGGGCGGATGCATGACCTATATAT----------------------------GGTGCATGGACGAATAAAGTGCACG
TCCGAACCCAAAATGAATAAAAGGAGTTTGTAAGGGCCGCCTATTTAACAG-----------------------------
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----------------------------GGCATCTGAATTTTCTTTTGGCTTAAGTCGATTTTCCCAGCCATCCAACGAG
CCGTTAGCGGGCAGCGTGCGGGCCACGTGGCAGGTACGCTTTGCCCTGAGTTGCACTGTAATCCGACTGCTTTGCCGAGG
CAACTTCGGCTTACCGGAGTGTACGCCGTGTGGGCTGTTTAAGCTGAATGT--CTGAACGCGGTGTTCACGGCGTACACG
TAGATAAGCCGAGTACCACCTGTTTGTCGTGTGCCATCAT-----------------------ATAAGCCGTAAATTAAC
CCGTGTTTCAACACTCGGCTTACCATATGATACTAGGCCACGTGTGTTTTTCCTGTAGTGGCTGCAGCATTTTCGGAGAT
GTGGCTAGTTTTTTCTTCTTCTTTTTGGGGGGCGGGCAGATGTGGCTAGTTGCGGCTCAGGCTGGACAGAGCGAGCGGGC
TTTTCGGCCCGCTCGTGACACGTTCAGGACCGGGCCATACAGTCCTGGCCCGCTCAAGAAATTGACCGATCCGGTTAGAG
AATTTCAGCCCGAAATTTAGCTCGGTCTGGTCTGGTCTTTAACCGGTCCGACCGAGCGGACCGAAGCGCGCTGCCGGCTG
TTCATGTCATCGCGGCCAGCGGCGACACCATGCTCTGGCCGGTGAGATCCGCGCGCTGCGACTCCGACGGCGACGCCCCG
ACGTCCTTCTCCCGCATGGCGGCGCCCCTCCTCAACTTGTTTCCTTTTATTGAGTCCAACAAAGAAGGAAACGCTGTCAC
ACCCGTGATTATCGAGAGGAACAGGGACAAGAGGCAGTCACGTCCTACCGTTTTGTTTTCCTTTTAACCGAGAGAAAATA
TAGAGAACGAGATAAACATGATTCGATCCGATAATTAAGGCGCCTTCCCACGTCAATTCCTCGCTGCCGTTCCTTTTATT
TGGCACTAATGAGAGAAATGGGTTCAATCCAATAATCAGGCGCCATCCCATGATGCAGTTCCTTTTATTTAGTCGAACAT
GCAGAAAACAGAAGGAACGAGAGAGAGAAAATGGTTCGATCCGACAATCACGGTGTCATCCCAATACCAACTTCACGTCA
GAATTGATCCGTCAATTATGGCAAGGCCCGTACACAGAGAATCGTGGGCTAATGCACGCGCTAAACTACTTGCATGGTAC
AGAAAAATCTGCTAAGGAACACACCATGGCCGCTGTCCAGCGCACTTCCTACGGCACGTCGTCCACCTCGGCTTCAGCGC
TCGCGCACGTCGTCCAGCCCACCAAAGCACCCGCGCCGCCGCGCGCATCGTGCACCTCGCCACTGCACCAGAGGACGTCG
TCGCCGGTGATGTTTGGTCGGTCCGCTCGGTCTGGCCCGGGCTTCGCCGCCGCCGGTCTGGTCCGGTTGGTCCGTCCGGT
CCGCCGGCGGCCGGTCCAAACAATGACTCGGTCAGGGACCGGACCGTGTCCGCCCTGAGTTGCGGCCTAGGCGTGGCAAA
ATGTTAACGGGTGGAGGTGGAGGTGGGGCGTTTCATTTTTGACCGCCAGTGAGATCTCTA-ATGAGAGGCAGGGTTTGGA
GGAGTGGTAGTGGGGAAAGAAATCTACAGAGCCGTTGGGTCAGGATCATACCAAGGAGAGTGAAGTAGCCGAAAACAATA
TCAGACCATAGATATGAAGTGTTTCCCTTTCTTATACTAGTAGTCGCTCTTACGGAGGAGAG------------------
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>chr5D_1036
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-------------------------------------GATGCTGAGGTTCACCAGCTGCCTTCTGCTGCCCGCGCTAGCG
GCGAGCCACCTGCTGCTCGCCGCCGCCGGCGCTGGCTGCGGGCCGAGCGGCACGCTCCGGCCGACCCAGAGCCACCCGTG
CCAGGACTGCTGCAAGCCCAGGCAGGCGTACCCGACGTACAGCTGCTCGCCGCCGGTCTCCTCGTCCACCCGGGCGGTCA
TGACGCTGAACGACTTCGGCGAGGGCGGCGACGGCGGGGACCCGTCCGAGTGCGACGGCGCGTTCCACCGCAGCTTGGAG
CGCGTGGTGGCGCTGTCCACGGGGTGGTACAGCGGGGGCTCCCGCTGCGGCAAGAGCATACGGGTCCGAGCCAACGGCAG
GTCCGTGCTTGCCAAGGTCGTCGACGAGTGCGACACCGTGAACGGGTGCGACCGCGAGCACGCCTTCCAGCCGCCGTGCC
GTAACAACGTCGTCGATGCCTCCCGGGCGGTCTGGGATGCGCTGAGCATCACCGGGGAGGAGGTCGGCGAGTGCAACATC
ACTTGGTCCGCTGCATGACCTA----------------------------------------------------------
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>SNPs
---------------------------S------------------S----------S---S--S----S----------
-------------------------------------------------------------S------------------
----------------------------------S-----------S--------------S------------------
----------------S---------------------S------S----------------------------S----S
------------SS-SSSSS---------S------S------S--------------S-------S-------------
--------SSS-S-------------------------------------------------------------------
------------------------------------------------------------S------------S------
---------------------------------------S------------S----S-----------S----------
---S-S--------------------------------------------------------------------------
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--------------------------------------S-------------------------------------S---
---------------------------S----------------------------------------------------
----------------S---S--------------------------------S--------------------------
------------------S---------------------S---------------------------------------
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----S---------------------------------------------------------------------------
-------S------------------------------------------------------------------------
---------S----------------------------------------------------------------------
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--------S--------------------------------------------------------------S----S--S
SS--S--------------------S------------------------------------------------------
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------------S-----------------------------------------------------S------------S
-------------S------------------S---------------SS-SS---------------------------
---S-----------------------S------------SSSSSSSSSSSSSSSSSSSSSSS-----S-----------
----------S-------S-----S------------SS---------------------------S-------------
------------S---------------S---S-----------------------------------------------
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-------S---------------------------------------------------SS-------------------
-S--------S---------------------------S-------------S--------------S------------
-S--S-SSS-----------------------S-----------------------------SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_630
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--------------------------------------------------GATCCCGGGCTCAGAATTGG----------
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>reverse_1757
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----------------------------------------------------------------------------TACA
CGCGGACCCAAAATGA----------------------------------------------------------------
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>forward_1174
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----------------------------------AAAGATGCTGAGGTCCACCG--------------------------
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>reverse_3153
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--------------------------------TGGGCAGATGTGGCTAGTTG----------------------------
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-------------------------------
