Multiple sequence alignment - TraesCS5D01G238900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G238900 chr5D 100.000 2393 0 0 1 2393 346890313 346887921 0.000000e+00 4420.0
1 TraesCS5D01G238900 chr5D 93.916 263 15 1 3 265 66619542 66619803 1.720000e-106 396.0
2 TraesCS5D01G238900 chr5D 93.585 265 16 1 1 265 184851843 184851580 6.200000e-106 394.0
3 TraesCS5D01G238900 chr5A 88.326 2193 122 57 260 2351 444842356 444844515 0.000000e+00 2508.0
4 TraesCS5D01G238900 chr5B 92.826 906 40 12 538 1426 404072762 404073659 0.000000e+00 1290.0
5 TraesCS5D01G238900 chr5B 88.190 779 40 23 1473 2212 404073675 404074440 0.000000e+00 881.0
6 TraesCS5D01G238900 chr5B 97.333 150 4 0 2189 2338 404074445 404074594 3.050000e-64 255.0
7 TraesCS5D01G238900 chr5B 89.308 159 17 0 260 418 534469522 534469680 1.450000e-47 200.0
8 TraesCS5D01G238900 chr3D 94.615 260 14 0 1 260 181509049 181508790 1.030000e-108 403.0
9 TraesCS5D01G238900 chr3D 93.333 270 18 0 1 270 181939563 181939294 1.330000e-107 399.0
10 TraesCS5D01G238900 chr3D 93.585 265 16 1 1 265 439873096 439872833 6.200000e-106 394.0
11 TraesCS5D01G238900 chr3D 86.139 202 27 1 260 460 446110527 446110326 1.440000e-52 217.0
12 TraesCS5D01G238900 chr4D 93.962 265 15 1 1 265 23203007 23202744 1.330000e-107 399.0
13 TraesCS5D01G238900 chr4D 93.893 262 16 0 1 262 421706871 421706610 1.720000e-106 396.0
14 TraesCS5D01G238900 chr7D 94.231 260 14 1 1 260 279154814 279154556 1.720000e-106 396.0
15 TraesCS5D01G238900 chr7D 92.466 146 11 0 260 405 53629631 53629486 2.410000e-50 209.0
16 TraesCS5D01G238900 chr7D 87.037 54 6 1 407 459 486165876 486165929 2.570000e-05 60.2
17 TraesCS5D01G238900 chr4B 93.258 267 17 1 1 267 192960025 192959760 2.230000e-105 392.0
18 TraesCS5D01G238900 chr4B 87.065 201 24 2 260 459 599327186 599326987 2.390000e-55 226.0
19 TraesCS5D01G238900 chr4B 96.774 31 1 0 429 459 588799280 588799250 4.000000e-03 52.8
20 TraesCS5D01G238900 chr2B 88.614 202 21 2 260 460 529642117 529642317 6.610000e-61 244.0
21 TraesCS5D01G238900 chr2B 83.163 196 32 1 267 461 7571983 7571788 6.800000e-41 178.0
22 TraesCS5D01G238900 chr2D 87.940 199 23 1 263 460 448632648 448632450 1.430000e-57 233.0
23 TraesCS5D01G238900 chr3B 89.617 183 18 1 263 444 828541641 828541459 5.140000e-57 231.0
24 TraesCS5D01G238900 chr3B 86.567 201 27 0 260 460 774691159 774691359 3.100000e-54 222.0
25 TraesCS5D01G238900 chr7B 97.674 43 1 0 418 460 721804524 721804566 9.170000e-10 75.0
26 TraesCS5D01G238900 chr7A 84.746 59 9 0 399 457 529439006 529439064 2.570000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G238900 chr5D 346887921 346890313 2392 True 4420.000000 4420 100.000 1 2393 1 chr5D.!!$R2 2392
1 TraesCS5D01G238900 chr5A 444842356 444844515 2159 False 2508.000000 2508 88.326 260 2351 1 chr5A.!!$F1 2091
2 TraesCS5D01G238900 chr5B 404072762 404074594 1832 False 808.666667 1290 92.783 538 2338 3 chr5B.!!$F2 1800

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
233 234 0.036388 AGGCCCAACACGTGTCTATG 60.036 55.0 23.61 16.53 0.0 2.23 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1453 1514 0.391793 CGGCAAAGAGGGAGGAGAAC 60.392 60.0 0.0 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.748892 ACACTTGTATCACCATCTCTTCG 58.251 43.478 0.00 0.00 0.00 3.79
26 27 3.553511 CACTTGTATCACCATCTCTTCGC 59.446 47.826 0.00 0.00 0.00 4.70
27 28 2.890808 TGTATCACCATCTCTTCGCC 57.109 50.000 0.00 0.00 0.00 5.54
28 29 2.107366 TGTATCACCATCTCTTCGCCA 58.893 47.619 0.00 0.00 0.00 5.69
29 30 2.499693 TGTATCACCATCTCTTCGCCAA 59.500 45.455 0.00 0.00 0.00 4.52
30 31 2.787473 ATCACCATCTCTTCGCCAAA 57.213 45.000 0.00 0.00 0.00 3.28
31 32 1.808411 TCACCATCTCTTCGCCAAAC 58.192 50.000 0.00 0.00 0.00 2.93
32 33 1.347707 TCACCATCTCTTCGCCAAACT 59.652 47.619 0.00 0.00 0.00 2.66
33 34 2.565391 TCACCATCTCTTCGCCAAACTA 59.435 45.455 0.00 0.00 0.00 2.24
34 35 2.932614 CACCATCTCTTCGCCAAACTAG 59.067 50.000 0.00 0.00 0.00 2.57
35 36 2.567615 ACCATCTCTTCGCCAAACTAGT 59.432 45.455 0.00 0.00 0.00 2.57
36 37 2.932614 CCATCTCTTCGCCAAACTAGTG 59.067 50.000 0.00 0.00 0.00 2.74
37 38 2.080286 TCTCTTCGCCAAACTAGTGC 57.920 50.000 0.00 0.00 0.00 4.40
38 39 1.343142 TCTCTTCGCCAAACTAGTGCA 59.657 47.619 0.00 0.00 0.00 4.57
39 40 1.728971 CTCTTCGCCAAACTAGTGCAG 59.271 52.381 0.00 0.00 0.00 4.41
40 41 1.070134 TCTTCGCCAAACTAGTGCAGT 59.930 47.619 0.00 0.00 40.05 4.40
55 56 9.681062 AACTAGTGCAGTTATACAAATTACCAT 57.319 29.630 0.00 0.00 45.93 3.55
56 57 9.681062 ACTAGTGCAGTTATACAAATTACCATT 57.319 29.630 0.00 0.00 31.59 3.16
72 73 9.883142 AAATTACCATTATATTTGGTGTGTTGG 57.117 29.630 16.45 0.00 46.81 3.77
73 74 5.930837 ACCATTATATTTGGTGTGTTGGG 57.069 39.130 8.76 0.00 45.71 4.12
74 75 4.714308 ACCATTATATTTGGTGTGTTGGGG 59.286 41.667 8.76 0.00 45.71 4.96
75 76 4.959210 CCATTATATTTGGTGTGTTGGGGA 59.041 41.667 0.00 0.00 0.00 4.81
76 77 5.163457 CCATTATATTTGGTGTGTTGGGGAC 60.163 44.000 0.00 0.00 0.00 4.46
77 78 3.534357 ATATTTGGTGTGTTGGGGACA 57.466 42.857 0.00 0.00 39.83 4.02
86 87 1.507140 TGTTGGGGACACAAGAGACT 58.493 50.000 0.00 0.00 42.67 3.24
87 88 1.843851 TGTTGGGGACACAAGAGACTT 59.156 47.619 0.00 0.00 42.67 3.01
88 89 2.241176 TGTTGGGGACACAAGAGACTTT 59.759 45.455 0.00 0.00 42.67 2.66
89 90 3.288092 GTTGGGGACACAAGAGACTTTT 58.712 45.455 0.00 0.00 42.67 2.27
90 91 3.662759 TGGGGACACAAGAGACTTTTT 57.337 42.857 0.00 0.00 33.40 1.94
91 92 4.781775 TGGGGACACAAGAGACTTTTTA 57.218 40.909 0.00 0.00 33.40 1.52
92 93 5.319043 TGGGGACACAAGAGACTTTTTAT 57.681 39.130 0.00 0.00 33.40 1.40
93 94 5.313712 TGGGGACACAAGAGACTTTTTATC 58.686 41.667 0.00 0.00 33.40 1.75
94 95 5.163141 TGGGGACACAAGAGACTTTTTATCA 60.163 40.000 0.00 0.00 33.40 2.15
95 96 5.412904 GGGGACACAAGAGACTTTTTATCAG 59.587 44.000 0.00 0.00 0.00 2.90
96 97 5.998363 GGGACACAAGAGACTTTTTATCAGT 59.002 40.000 0.00 0.00 0.00 3.41
97 98 6.486993 GGGACACAAGAGACTTTTTATCAGTT 59.513 38.462 0.00 0.00 0.00 3.16
98 99 7.355778 GGACACAAGAGACTTTTTATCAGTTG 58.644 38.462 0.00 0.00 0.00 3.16
99 100 7.264373 ACACAAGAGACTTTTTATCAGTTGG 57.736 36.000 0.00 0.00 0.00 3.77
100 101 6.828785 ACACAAGAGACTTTTTATCAGTTGGT 59.171 34.615 0.00 0.00 0.00 3.67
101 102 7.339466 ACACAAGAGACTTTTTATCAGTTGGTT 59.661 33.333 0.00 0.00 0.00 3.67
102 103 7.645340 CACAAGAGACTTTTTATCAGTTGGTTG 59.355 37.037 0.00 0.00 0.00 3.77
103 104 6.319141 AGAGACTTTTTATCAGTTGGTTGC 57.681 37.500 0.00 0.00 0.00 4.17
104 105 5.827797 AGAGACTTTTTATCAGTTGGTTGCA 59.172 36.000 0.00 0.00 0.00 4.08
105 106 6.016777 AGAGACTTTTTATCAGTTGGTTGCAG 60.017 38.462 0.00 0.00 0.00 4.41
106 107 5.010012 AGACTTTTTATCAGTTGGTTGCAGG 59.990 40.000 0.00 0.00 0.00 4.85
107 108 4.039124 ACTTTTTATCAGTTGGTTGCAGGG 59.961 41.667 0.00 0.00 0.00 4.45
108 109 2.969821 TTATCAGTTGGTTGCAGGGT 57.030 45.000 0.00 0.00 0.00 4.34
109 110 2.969821 TATCAGTTGGTTGCAGGGTT 57.030 45.000 0.00 0.00 0.00 4.11
110 111 2.969821 ATCAGTTGGTTGCAGGGTTA 57.030 45.000 0.00 0.00 0.00 2.85
111 112 2.969821 TCAGTTGGTTGCAGGGTTAT 57.030 45.000 0.00 0.00 0.00 1.89
112 113 3.237268 TCAGTTGGTTGCAGGGTTATT 57.763 42.857 0.00 0.00 0.00 1.40
113 114 3.571590 TCAGTTGGTTGCAGGGTTATTT 58.428 40.909 0.00 0.00 0.00 1.40
114 115 3.320541 TCAGTTGGTTGCAGGGTTATTTG 59.679 43.478 0.00 0.00 0.00 2.32
115 116 3.320541 CAGTTGGTTGCAGGGTTATTTGA 59.679 43.478 0.00 0.00 0.00 2.69
116 117 3.573967 AGTTGGTTGCAGGGTTATTTGAG 59.426 43.478 0.00 0.00 0.00 3.02
117 118 3.517296 TGGTTGCAGGGTTATTTGAGA 57.483 42.857 0.00 0.00 0.00 3.27
118 119 3.420893 TGGTTGCAGGGTTATTTGAGAG 58.579 45.455 0.00 0.00 0.00 3.20
119 120 3.073798 TGGTTGCAGGGTTATTTGAGAGA 59.926 43.478 0.00 0.00 0.00 3.10
120 121 3.691609 GGTTGCAGGGTTATTTGAGAGAG 59.308 47.826 0.00 0.00 0.00 3.20
121 122 4.565652 GGTTGCAGGGTTATTTGAGAGAGA 60.566 45.833 0.00 0.00 0.00 3.10
122 123 4.207891 TGCAGGGTTATTTGAGAGAGAC 57.792 45.455 0.00 0.00 0.00 3.36
123 124 3.055094 TGCAGGGTTATTTGAGAGAGACC 60.055 47.826 0.00 0.00 0.00 3.85
124 125 3.055094 GCAGGGTTATTTGAGAGAGACCA 60.055 47.826 0.00 0.00 0.00 4.02
125 126 4.384647 GCAGGGTTATTTGAGAGAGACCAT 60.385 45.833 0.00 0.00 0.00 3.55
126 127 5.363939 CAGGGTTATTTGAGAGAGACCATC 58.636 45.833 0.00 0.00 0.00 3.51
127 128 5.130145 CAGGGTTATTTGAGAGAGACCATCT 59.870 44.000 0.00 0.00 42.61 2.90
137 138 2.870175 AGAGACCATCTCCATCCTACG 58.130 52.381 2.18 0.00 44.42 3.51
138 139 1.271102 GAGACCATCTCCATCCTACGC 59.729 57.143 0.00 0.00 37.55 4.42
139 140 0.318762 GACCATCTCCATCCTACGCC 59.681 60.000 0.00 0.00 0.00 5.68
140 141 0.105453 ACCATCTCCATCCTACGCCT 60.105 55.000 0.00 0.00 0.00 5.52
141 142 0.605589 CCATCTCCATCCTACGCCTC 59.394 60.000 0.00 0.00 0.00 4.70
142 143 0.605589 CATCTCCATCCTACGCCTCC 59.394 60.000 0.00 0.00 0.00 4.30
143 144 0.543174 ATCTCCATCCTACGCCTCCC 60.543 60.000 0.00 0.00 0.00 4.30
144 145 1.457643 CTCCATCCTACGCCTCCCA 60.458 63.158 0.00 0.00 0.00 4.37
145 146 1.749334 CTCCATCCTACGCCTCCCAC 61.749 65.000 0.00 0.00 0.00 4.61
146 147 2.417516 CATCCTACGCCTCCCACG 59.582 66.667 0.00 0.00 0.00 4.94
147 148 2.838225 ATCCTACGCCTCCCACGG 60.838 66.667 0.00 0.00 34.00 4.94
148 149 3.369410 ATCCTACGCCTCCCACGGA 62.369 63.158 0.00 0.00 34.00 4.69
149 150 2.658321 ATCCTACGCCTCCCACGGAT 62.658 60.000 0.00 0.00 34.00 4.18
150 151 2.432300 CCTACGCCTCCCACGGATT 61.432 63.158 0.00 0.00 34.00 3.01
151 152 1.227263 CTACGCCTCCCACGGATTG 60.227 63.158 0.00 0.00 34.00 2.67
152 153 1.672854 CTACGCCTCCCACGGATTGA 61.673 60.000 0.00 0.00 34.00 2.57
153 154 1.046472 TACGCCTCCCACGGATTGAT 61.046 55.000 0.00 0.00 34.00 2.57
154 155 1.046472 ACGCCTCCCACGGATTGATA 61.046 55.000 0.00 0.00 34.00 2.15
155 156 0.105964 CGCCTCCCACGGATTGATAA 59.894 55.000 0.00 0.00 0.00 1.75
156 157 1.474320 CGCCTCCCACGGATTGATAAA 60.474 52.381 0.00 0.00 0.00 1.40
157 158 1.947456 GCCTCCCACGGATTGATAAAC 59.053 52.381 0.00 0.00 0.00 2.01
158 159 2.572290 CCTCCCACGGATTGATAAACC 58.428 52.381 0.00 0.00 0.00 3.27
159 160 2.172717 CCTCCCACGGATTGATAAACCT 59.827 50.000 0.00 0.00 0.00 3.50
160 161 3.371595 CCTCCCACGGATTGATAAACCTT 60.372 47.826 0.00 0.00 0.00 3.50
161 162 4.141574 CCTCCCACGGATTGATAAACCTTA 60.142 45.833 0.00 0.00 0.00 2.69
162 163 5.031066 TCCCACGGATTGATAAACCTTAG 57.969 43.478 0.00 0.00 0.00 2.18
163 164 4.134563 CCCACGGATTGATAAACCTTAGG 58.865 47.826 0.00 0.00 0.00 2.69
164 165 4.384868 CCCACGGATTGATAAACCTTAGGT 60.385 45.833 0.00 0.00 37.65 3.08
165 166 4.814771 CCACGGATTGATAAACCTTAGGTC 59.185 45.833 3.62 0.00 33.12 3.85
166 167 5.424757 CACGGATTGATAAACCTTAGGTCA 58.575 41.667 3.62 0.00 33.12 4.02
167 168 6.055588 CACGGATTGATAAACCTTAGGTCAT 58.944 40.000 3.62 0.80 33.12 3.06
168 169 6.542370 CACGGATTGATAAACCTTAGGTCATT 59.458 38.462 3.62 0.00 33.12 2.57
169 170 6.766467 ACGGATTGATAAACCTTAGGTCATTC 59.234 38.462 3.62 4.48 33.12 2.67
170 171 6.765989 CGGATTGATAAACCTTAGGTCATTCA 59.234 38.462 3.62 5.24 33.12 2.57
171 172 7.254795 CGGATTGATAAACCTTAGGTCATTCAC 60.255 40.741 3.62 0.00 33.12 3.18
172 173 7.775561 GGATTGATAAACCTTAGGTCATTCACT 59.224 37.037 3.62 2.46 33.12 3.41
173 174 9.178758 GATTGATAAACCTTAGGTCATTCACTT 57.821 33.333 3.62 0.00 33.12 3.16
174 175 7.921786 TGATAAACCTTAGGTCATTCACTTG 57.078 36.000 3.62 0.00 33.12 3.16
175 176 7.685481 TGATAAACCTTAGGTCATTCACTTGA 58.315 34.615 3.62 0.00 33.12 3.02
176 177 8.160765 TGATAAACCTTAGGTCATTCACTTGAA 58.839 33.333 3.62 0.00 33.12 2.69
177 178 6.884280 AAACCTTAGGTCATTCACTTGAAG 57.116 37.500 3.62 0.00 34.05 3.02
178 179 4.911390 ACCTTAGGTCATTCACTTGAAGG 58.089 43.478 0.00 0.00 37.48 3.46
179 180 4.597507 ACCTTAGGTCATTCACTTGAAGGA 59.402 41.667 0.00 2.27 41.76 3.36
180 181 5.073144 ACCTTAGGTCATTCACTTGAAGGAA 59.927 40.000 7.84 0.00 44.85 3.36
181 182 6.003950 CCTTAGGTCATTCACTTGAAGGAAA 58.996 40.000 7.84 0.00 44.85 3.13
182 183 6.490040 CCTTAGGTCATTCACTTGAAGGAAAA 59.510 38.462 7.84 3.43 44.85 2.29
183 184 7.177392 CCTTAGGTCATTCACTTGAAGGAAAAT 59.823 37.037 7.84 1.03 44.85 1.82
184 185 6.983906 AGGTCATTCACTTGAAGGAAAATT 57.016 33.333 7.84 0.00 44.85 1.82
185 186 6.752168 AGGTCATTCACTTGAAGGAAAATTG 58.248 36.000 7.84 0.00 44.85 2.32
186 187 5.406477 GGTCATTCACTTGAAGGAAAATTGC 59.594 40.000 7.84 0.00 44.85 3.56
187 188 6.218746 GTCATTCACTTGAAGGAAAATTGCT 58.781 36.000 7.84 0.00 44.85 3.91
188 189 7.370383 GTCATTCACTTGAAGGAAAATTGCTA 58.630 34.615 7.84 0.00 44.85 3.49
189 190 7.327032 GTCATTCACTTGAAGGAAAATTGCTAC 59.673 37.037 7.84 0.00 44.85 3.58
190 191 6.959639 TTCACTTGAAGGAAAATTGCTACT 57.040 33.333 0.00 0.00 0.00 2.57
191 192 6.317789 TCACTTGAAGGAAAATTGCTACTG 57.682 37.500 0.00 0.00 0.00 2.74
192 193 5.827797 TCACTTGAAGGAAAATTGCTACTGT 59.172 36.000 0.00 0.00 0.00 3.55
193 194 6.017109 TCACTTGAAGGAAAATTGCTACTGTC 60.017 38.462 0.00 0.00 0.00 3.51
194 195 5.241728 ACTTGAAGGAAAATTGCTACTGTCC 59.758 40.000 0.00 0.00 0.00 4.02
195 196 4.985538 TGAAGGAAAATTGCTACTGTCCT 58.014 39.130 0.00 0.00 37.08 3.85
196 197 6.121776 TGAAGGAAAATTGCTACTGTCCTA 57.878 37.500 0.00 0.00 34.37 2.94
197 198 5.938125 TGAAGGAAAATTGCTACTGTCCTAC 59.062 40.000 0.00 0.00 34.37 3.18
198 199 5.499004 AGGAAAATTGCTACTGTCCTACA 57.501 39.130 0.00 0.00 33.70 2.74
199 200 5.876357 AGGAAAATTGCTACTGTCCTACAA 58.124 37.500 0.00 0.00 33.70 2.41
200 201 6.303839 AGGAAAATTGCTACTGTCCTACAAA 58.696 36.000 0.00 0.00 33.70 2.83
201 202 6.775629 AGGAAAATTGCTACTGTCCTACAAAA 59.224 34.615 0.00 0.00 33.70 2.44
202 203 6.861572 GGAAAATTGCTACTGTCCTACAAAAC 59.138 38.462 0.00 0.00 0.00 2.43
203 204 7.255486 GGAAAATTGCTACTGTCCTACAAAACT 60.255 37.037 0.00 0.00 0.00 2.66
204 205 6.803154 AATTGCTACTGTCCTACAAAACTC 57.197 37.500 0.00 0.00 0.00 3.01
205 206 5.546621 TTGCTACTGTCCTACAAAACTCT 57.453 39.130 0.00 0.00 0.00 3.24
206 207 4.883083 TGCTACTGTCCTACAAAACTCTG 58.117 43.478 0.00 0.00 0.00 3.35
207 208 3.680458 GCTACTGTCCTACAAAACTCTGC 59.320 47.826 0.00 0.00 0.00 4.26
208 209 2.755650 ACTGTCCTACAAAACTCTGCG 58.244 47.619 0.00 0.00 0.00 5.18
209 210 1.461127 CTGTCCTACAAAACTCTGCGC 59.539 52.381 0.00 0.00 0.00 6.09
210 211 1.070134 TGTCCTACAAAACTCTGCGCT 59.930 47.619 9.73 0.00 0.00 5.92
211 212 2.143925 GTCCTACAAAACTCTGCGCTT 58.856 47.619 9.73 0.00 0.00 4.68
212 213 2.096218 GTCCTACAAAACTCTGCGCTTG 60.096 50.000 9.73 6.07 0.00 4.01
213 214 1.197721 CCTACAAAACTCTGCGCTTGG 59.802 52.381 9.73 0.20 0.00 3.61
214 215 2.143122 CTACAAAACTCTGCGCTTGGA 58.857 47.619 9.73 0.00 0.00 3.53
215 216 0.947244 ACAAAACTCTGCGCTTGGAG 59.053 50.000 9.73 15.60 35.86 3.86
216 217 0.239347 CAAAACTCTGCGCTTGGAGG 59.761 55.000 22.09 10.10 34.22 4.30
217 218 1.518903 AAAACTCTGCGCTTGGAGGC 61.519 55.000 22.09 0.00 34.22 4.70
218 219 3.909086 AACTCTGCGCTTGGAGGCC 62.909 63.158 22.09 0.00 34.22 5.19
224 225 3.365265 CGCTTGGAGGCCCAACAC 61.365 66.667 0.00 0.00 46.94 3.32
225 226 3.365265 GCTTGGAGGCCCAACACG 61.365 66.667 0.00 0.00 46.94 4.49
226 227 2.113139 CTTGGAGGCCCAACACGT 59.887 61.111 0.00 0.00 46.94 4.49
227 228 2.203280 TTGGAGGCCCAACACGTG 60.203 61.111 15.48 15.48 46.94 4.49
228 229 2.958578 CTTGGAGGCCCAACACGTGT 62.959 60.000 17.22 17.22 46.94 4.49
229 230 2.668550 GGAGGCCCAACACGTGTC 60.669 66.667 23.61 9.25 0.00 3.67
230 231 2.426023 GAGGCCCAACACGTGTCT 59.574 61.111 23.61 14.32 0.00 3.41
231 232 1.669440 GAGGCCCAACACGTGTCTA 59.331 57.895 23.61 0.00 0.00 2.59
232 233 0.249398 GAGGCCCAACACGTGTCTAT 59.751 55.000 23.61 3.04 0.00 1.98
233 234 0.036388 AGGCCCAACACGTGTCTATG 60.036 55.000 23.61 16.53 0.00 2.23
234 235 0.036765 GGCCCAACACGTGTCTATGA 60.037 55.000 23.61 0.00 0.00 2.15
235 236 1.359848 GCCCAACACGTGTCTATGAG 58.640 55.000 23.61 8.89 0.00 2.90
236 237 1.067142 GCCCAACACGTGTCTATGAGA 60.067 52.381 23.61 0.00 0.00 3.27
237 238 2.611971 GCCCAACACGTGTCTATGAGAA 60.612 50.000 23.61 0.00 0.00 2.87
238 239 3.861840 CCCAACACGTGTCTATGAGAAT 58.138 45.455 23.61 0.00 0.00 2.40
239 240 4.679639 GCCCAACACGTGTCTATGAGAATA 60.680 45.833 23.61 0.00 0.00 1.75
240 241 5.416083 CCCAACACGTGTCTATGAGAATAA 58.584 41.667 23.61 0.00 0.00 1.40
241 242 5.872617 CCCAACACGTGTCTATGAGAATAAA 59.127 40.000 23.61 0.00 0.00 1.40
242 243 6.370442 CCCAACACGTGTCTATGAGAATAAAA 59.630 38.462 23.61 0.00 0.00 1.52
243 244 7.065803 CCCAACACGTGTCTATGAGAATAAAAT 59.934 37.037 23.61 0.00 0.00 1.82
244 245 8.450964 CCAACACGTGTCTATGAGAATAAAATT 58.549 33.333 23.61 0.00 0.00 1.82
245 246 9.265938 CAACACGTGTCTATGAGAATAAAATTG 57.734 33.333 23.61 6.16 0.00 2.32
246 247 7.464358 ACACGTGTCTATGAGAATAAAATTGC 58.536 34.615 17.22 0.00 0.00 3.56
247 248 6.624917 CACGTGTCTATGAGAATAAAATTGCG 59.375 38.462 7.58 0.00 0.00 4.85
248 249 6.312918 ACGTGTCTATGAGAATAAAATTGCGT 59.687 34.615 0.00 0.00 0.00 5.24
249 250 7.148474 ACGTGTCTATGAGAATAAAATTGCGTT 60.148 33.333 0.00 0.00 0.00 4.84
250 251 7.162546 CGTGTCTATGAGAATAAAATTGCGTTG 59.837 37.037 0.00 0.00 0.00 4.10
251 252 7.962918 GTGTCTATGAGAATAAAATTGCGTTGT 59.037 33.333 0.00 0.00 0.00 3.32
252 253 9.157104 TGTCTATGAGAATAAAATTGCGTTGTA 57.843 29.630 0.00 0.00 0.00 2.41
253 254 9.638300 GTCTATGAGAATAAAATTGCGTTGTAG 57.362 33.333 0.00 0.00 0.00 2.74
254 255 9.594478 TCTATGAGAATAAAATTGCGTTGTAGA 57.406 29.630 0.00 0.00 0.00 2.59
255 256 9.638300 CTATGAGAATAAAATTGCGTTGTAGAC 57.362 33.333 0.00 0.00 0.00 2.59
256 257 7.428282 TGAGAATAAAATTGCGTTGTAGACA 57.572 32.000 0.00 0.00 0.00 3.41
257 258 8.039603 TGAGAATAAAATTGCGTTGTAGACAT 57.960 30.769 0.00 0.00 0.00 3.06
258 259 8.175069 TGAGAATAAAATTGCGTTGTAGACATC 58.825 33.333 0.00 0.00 0.00 3.06
259 260 8.039603 AGAATAAAATTGCGTTGTAGACATCA 57.960 30.769 0.00 0.00 0.00 3.07
260 261 8.511321 AGAATAAAATTGCGTTGTAGACATCAA 58.489 29.630 0.00 0.00 0.00 2.57
261 262 8.447787 AATAAAATTGCGTTGTAGACATCAAC 57.552 30.769 0.00 0.00 40.89 3.18
279 280 6.146184 ACATCAACGCTATGTATGCTTGATAC 59.854 38.462 0.00 0.00 36.81 2.24
286 287 6.430451 GCTATGTATGCTTGATACCAACAAC 58.570 40.000 0.00 0.00 36.79 3.32
304 305 1.005766 AACTGTTGTTTACGTGCGACG 60.006 47.619 0.00 7.07 39.49 5.12
322 323 3.404564 GACGTTGTGTTGCATAATCGAC 58.595 45.455 0.00 0.00 0.00 4.20
359 360 5.824624 GCATGGATTTGAGAGTCCAGATTTA 59.175 40.000 0.00 0.00 46.87 1.40
361 362 7.468357 GCATGGATTTGAGAGTCCAGATTTAAG 60.468 40.741 0.00 0.00 46.87 1.85
368 369 9.605275 TTTGAGAGTCCAGATTTAAGATATGTG 57.395 33.333 0.00 0.00 0.00 3.21
369 370 8.539117 TGAGAGTCCAGATTTAAGATATGTGA 57.461 34.615 0.00 0.00 0.00 3.58
434 458 2.362375 TTGAGGGGCCGGATTTGC 60.362 61.111 5.05 0.00 0.00 3.68
435 459 2.917897 TTGAGGGGCCGGATTTGCT 61.918 57.895 5.05 0.00 0.00 3.91
441 465 0.107165 GGGCCGGATTTGCTAAGTCT 60.107 55.000 5.05 0.00 0.00 3.24
442 466 1.017387 GGCCGGATTTGCTAAGTCTG 58.983 55.000 5.05 0.00 0.00 3.51
444 468 1.017387 CCGGATTTGCTAAGTCTGGC 58.983 55.000 0.00 0.00 32.10 4.85
460 484 2.363680 TCTGGCTGTAGATGCTCTAAGC 59.636 50.000 12.94 12.94 42.82 3.09
468 492 6.715347 TGTAGATGCTCTAAGCTCACATAA 57.285 37.500 0.11 0.00 42.97 1.90
469 493 6.743110 TGTAGATGCTCTAAGCTCACATAAG 58.257 40.000 0.11 0.00 42.97 1.73
471 495 5.841810 AGATGCTCTAAGCTCACATAAGAC 58.158 41.667 0.11 0.00 42.97 3.01
476 500 2.015736 AAGCTCACATAAGACCAGCG 57.984 50.000 0.00 0.00 35.14 5.18
479 503 2.695666 AGCTCACATAAGACCAGCGTAT 59.304 45.455 0.00 0.00 35.14 3.06
480 504 3.053455 GCTCACATAAGACCAGCGTATC 58.947 50.000 0.00 0.00 0.00 2.24
483 507 3.951680 TCACATAAGACCAGCGTATCAGA 59.048 43.478 0.00 0.00 0.00 3.27
490 514 4.938080 AGACCAGCGTATCAGAATAACAG 58.062 43.478 0.00 0.00 0.00 3.16
493 517 5.589192 ACCAGCGTATCAGAATAACAGTAC 58.411 41.667 0.00 0.00 0.00 2.73
496 520 3.979495 GCGTATCAGAATAACAGTACCCG 59.021 47.826 0.00 0.00 0.00 5.28
497 521 4.261322 GCGTATCAGAATAACAGTACCCGA 60.261 45.833 0.00 0.00 0.00 5.14
502 526 5.475719 TCAGAATAACAGTACCCGACAAAG 58.524 41.667 0.00 0.00 0.00 2.77
510 534 4.814771 ACAGTACCCGACAAAGAAGAAAAG 59.185 41.667 0.00 0.00 0.00 2.27
551 575 1.272490 CCTACAGACACACGACCACAT 59.728 52.381 0.00 0.00 0.00 3.21
592 616 5.917462 CTGGAAAAGGAAGGTTGTTTTCAT 58.083 37.500 8.56 0.00 40.46 2.57
783 807 1.226491 CGACGTATGTGGACCCGAC 60.226 63.158 0.00 0.00 0.00 4.79
787 811 1.153429 GTATGTGGACCCGACCTGC 60.153 63.158 0.00 0.00 0.00 4.85
818 844 2.104253 AAATTAGGCGGGCGTGACG 61.104 57.895 0.00 0.00 0.00 4.35
906 933 1.241315 CCCACGAAACCGCATCCTTT 61.241 55.000 0.00 0.00 0.00 3.11
935 962 1.097722 GATCCTATCCCTCCCCTCCT 58.902 60.000 0.00 0.00 0.00 3.69
1027 1086 2.216898 CTCCAAGATTTCTCGCCATCC 58.783 52.381 0.00 0.00 0.00 3.51
1036 1095 2.044352 TCGCCATCCTCCTCGTCA 60.044 61.111 0.00 0.00 0.00 4.35
1098 1157 1.881973 CTGGAATATCAATGCCCACCG 59.118 52.381 0.00 0.00 27.78 4.94
1120 1179 4.359706 GGCTTGTTTGTTCTTTTCGATGT 58.640 39.130 0.00 0.00 0.00 3.06
1131 1190 6.708502 TGTTCTTTTCGATGTCAATCAGGTAA 59.291 34.615 0.00 0.00 32.61 2.85
1132 1191 7.227711 TGTTCTTTTCGATGTCAATCAGGTAAA 59.772 33.333 0.00 0.00 32.61 2.01
1134 1193 8.160521 TCTTTTCGATGTCAATCAGGTAAAAA 57.839 30.769 0.00 0.00 32.61 1.94
1136 1195 9.410556 CTTTTCGATGTCAATCAGGTAAAAATT 57.589 29.630 0.00 0.00 32.61 1.82
1426 1487 0.803117 TGCGTGTAGAGGACGAAGAG 59.197 55.000 0.00 0.00 39.21 2.85
1465 1526 1.545706 AACGGCTGTTCTCCTCCCTC 61.546 60.000 4.68 0.00 30.83 4.30
1467 1528 1.261238 CGGCTGTTCTCCTCCCTCTT 61.261 60.000 0.00 0.00 0.00 2.85
1469 1530 1.339535 GGCTGTTCTCCTCCCTCTTTG 60.340 57.143 0.00 0.00 0.00 2.77
1508 1570 6.173339 TGATGAGTTGGTTAATCTGGAGAAC 58.827 40.000 0.00 0.00 0.00 3.01
1543 1605 7.945134 ACTGCTTATGTTTTGAGTTTTGATCT 58.055 30.769 0.00 0.00 0.00 2.75
1597 1665 3.216800 CCATCTGTACAACCCATCCATG 58.783 50.000 0.00 0.00 0.00 3.66
1598 1666 3.371917 CCATCTGTACAACCCATCCATGT 60.372 47.826 0.00 0.00 0.00 3.21
1599 1667 3.348647 TCTGTACAACCCATCCATGTG 57.651 47.619 0.00 0.00 0.00 3.21
1601 1669 3.841255 TCTGTACAACCCATCCATGTGTA 59.159 43.478 0.00 0.00 0.00 2.90
1624 1692 6.578020 ATGTGCTTTGCAATAAAATCATCG 57.422 33.333 0.00 0.00 41.47 3.84
1641 1714 2.987413 TCGACATTGTGCCATTGTTC 57.013 45.000 0.00 0.38 29.78 3.18
1645 1718 3.255725 GACATTGTGCCATTGTTCCATG 58.744 45.455 0.00 0.00 29.78 3.66
1648 1721 3.932545 TTGTGCCATTGTTCCATGTAC 57.067 42.857 0.00 0.00 0.00 2.90
1649 1722 3.153369 TGTGCCATTGTTCCATGTACT 57.847 42.857 0.00 0.00 0.00 2.73
1650 1723 3.495331 TGTGCCATTGTTCCATGTACTT 58.505 40.909 0.00 0.00 0.00 2.24
1651 1724 4.657013 TGTGCCATTGTTCCATGTACTTA 58.343 39.130 0.00 0.00 0.00 2.24
1652 1725 5.260424 TGTGCCATTGTTCCATGTACTTAT 58.740 37.500 0.00 0.00 0.00 1.73
1653 1726 6.418946 TGTGCCATTGTTCCATGTACTTATA 58.581 36.000 0.00 0.00 0.00 0.98
1654 1727 7.059788 TGTGCCATTGTTCCATGTACTTATAT 58.940 34.615 0.00 0.00 0.00 0.86
1691 1768 1.466025 CCCAGTGTGCATGCCAGTTT 61.466 55.000 16.68 0.00 0.00 2.66
1721 1806 2.228103 TGACAGTACTCTGCTGGTAACG 59.772 50.000 0.00 0.00 44.77 3.18
1756 1841 9.508642 GGAGCTAATTATTAAGCAGGAACTAAT 57.491 33.333 1.03 0.00 36.02 1.73
1767 1855 6.796785 AGCAGGAACTAATAAAATGGCAAT 57.203 33.333 0.00 0.00 36.02 3.56
1768 1856 6.809869 AGCAGGAACTAATAAAATGGCAATC 58.190 36.000 0.00 0.00 36.02 2.67
1884 1972 3.068873 GGCATCTTCGACTCTCTTGGTAT 59.931 47.826 0.00 0.00 0.00 2.73
1885 1973 4.047822 GCATCTTCGACTCTCTTGGTATG 58.952 47.826 0.00 0.00 0.00 2.39
1886 1974 4.615949 CATCTTCGACTCTCTTGGTATGG 58.384 47.826 0.00 0.00 0.00 2.74
1887 1975 3.964411 TCTTCGACTCTCTTGGTATGGA 58.036 45.455 0.00 0.00 0.00 3.41
1888 1976 3.948473 TCTTCGACTCTCTTGGTATGGAG 59.052 47.826 0.00 0.00 0.00 3.86
1923 2011 0.237498 GGCGTAAACCAGACACAAGC 59.763 55.000 0.00 0.00 0.00 4.01
1954 2042 5.163982 GGTTTTACGAGAGAATCAAAGGTCG 60.164 44.000 0.00 0.00 37.82 4.79
2081 2171 4.913924 GTCAACTTGCTAACATTTGCTCTG 59.086 41.667 0.02 0.00 0.00 3.35
2113 2209 0.829990 TCGATGCTTCATACCCTGCA 59.170 50.000 0.08 0.00 39.83 4.41
2301 2466 4.855937 GGTAGTTCTTGAGTTACGTACAGC 59.144 45.833 0.00 0.00 0.00 4.40
2316 2481 3.361724 CGTACAGCTCGACAACTTGTTTC 60.362 47.826 0.00 0.00 0.00 2.78
2351 2516 8.928733 CGCTTAGTTGTTTAGTCCTTAACATAA 58.071 33.333 0.30 0.00 34.52 1.90
2354 2519 9.729281 TTAGTTGTTTAGTCCTTAACATAAGGG 57.271 33.333 14.50 0.00 37.99 3.95
2355 2520 6.657966 AGTTGTTTAGTCCTTAACATAAGGGC 59.342 38.462 11.87 11.87 42.23 5.19
2356 2521 6.129414 TGTTTAGTCCTTAACATAAGGGCA 57.871 37.500 19.73 6.27 44.28 5.36
2357 2522 6.727394 TGTTTAGTCCTTAACATAAGGGCAT 58.273 36.000 19.73 9.61 44.28 4.40
2358 2523 6.826741 TGTTTAGTCCTTAACATAAGGGCATC 59.173 38.462 19.73 9.34 44.28 3.91
2359 2524 4.439253 AGTCCTTAACATAAGGGCATCC 57.561 45.455 19.73 4.06 44.28 3.51
2360 2525 3.138468 AGTCCTTAACATAAGGGCATCCC 59.862 47.826 19.73 0.00 44.28 3.85
2370 2535 3.410960 GGGCATCCCAAGTCAGATC 57.589 57.895 0.00 0.00 44.65 2.75
2371 2536 0.179006 GGGCATCCCAAGTCAGATCC 60.179 60.000 0.00 0.00 44.65 3.36
2372 2537 0.533755 GGCATCCCAAGTCAGATCCG 60.534 60.000 0.00 0.00 0.00 4.18
2373 2538 1.162800 GCATCCCAAGTCAGATCCGC 61.163 60.000 0.00 0.00 0.00 5.54
2374 2539 0.178767 CATCCCAAGTCAGATCCGCA 59.821 55.000 0.00 0.00 0.00 5.69
2375 2540 0.911769 ATCCCAAGTCAGATCCGCAA 59.088 50.000 0.00 0.00 0.00 4.85
2376 2541 0.690192 TCCCAAGTCAGATCCGCAAA 59.310 50.000 0.00 0.00 0.00 3.68
2377 2542 0.804989 CCCAAGTCAGATCCGCAAAC 59.195 55.000 0.00 0.00 0.00 2.93
2378 2543 0.804989 CCAAGTCAGATCCGCAAACC 59.195 55.000 0.00 0.00 0.00 3.27
2379 2544 0.443869 CAAGTCAGATCCGCAAACCG 59.556 55.000 0.00 0.00 0.00 4.44
2380 2545 0.034896 AAGTCAGATCCGCAAACCGT 59.965 50.000 0.00 0.00 34.38 4.83
2381 2546 0.389948 AGTCAGATCCGCAAACCGTC 60.390 55.000 0.00 0.00 34.38 4.79
2382 2547 1.445410 TCAGATCCGCAAACCGTCG 60.445 57.895 0.00 0.00 34.38 5.12
2383 2548 2.813908 AGATCCGCAAACCGTCGC 60.814 61.111 0.00 0.00 34.38 5.19
2384 2549 3.115892 GATCCGCAAACCGTCGCA 61.116 61.111 0.00 0.00 34.38 5.10
2385 2550 2.435938 ATCCGCAAACCGTCGCAT 60.436 55.556 0.00 0.00 34.38 4.73
2386 2551 2.361427 GATCCGCAAACCGTCGCATC 62.361 60.000 0.00 0.00 34.38 3.91
2387 2552 4.499023 CCGCAAACCGTCGCATCG 62.499 66.667 0.00 0.00 34.38 3.84
2388 2553 3.773630 CGCAAACCGTCGCATCGT 61.774 61.111 0.00 0.00 0.00 3.73
2389 2554 2.095843 GCAAACCGTCGCATCGTC 59.904 61.111 0.00 0.00 0.00 4.20
2390 2555 2.776072 CAAACCGTCGCATCGTCC 59.224 61.111 0.00 0.00 0.00 4.79
2391 2556 2.807895 AAACCGTCGCATCGTCCG 60.808 61.111 0.00 0.00 0.00 4.79
2392 2557 3.271706 AAACCGTCGCATCGTCCGA 62.272 57.895 0.00 0.00 0.00 4.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.330278 CGAAGAGATGGTGATACAAGTGTAA 58.670 40.000 0.00 0.00 33.76 2.41
2 3 5.678871 GCGAAGAGATGGTGATACAAGTGTA 60.679 44.000 0.00 0.00 34.67 2.90
4 5 3.553511 GCGAAGAGATGGTGATACAAGTG 59.446 47.826 0.00 0.00 0.00 3.16
5 6 3.430929 GGCGAAGAGATGGTGATACAAGT 60.431 47.826 0.00 0.00 0.00 3.16
6 7 3.126831 GGCGAAGAGATGGTGATACAAG 58.873 50.000 0.00 0.00 0.00 3.16
7 8 2.499693 TGGCGAAGAGATGGTGATACAA 59.500 45.455 0.00 0.00 0.00 2.41
8 9 2.107366 TGGCGAAGAGATGGTGATACA 58.893 47.619 0.00 0.00 0.00 2.29
9 10 2.890808 TGGCGAAGAGATGGTGATAC 57.109 50.000 0.00 0.00 0.00 2.24
10 11 3.197766 AGTTTGGCGAAGAGATGGTGATA 59.802 43.478 0.00 0.00 0.00 2.15
11 12 2.026822 AGTTTGGCGAAGAGATGGTGAT 60.027 45.455 0.00 0.00 0.00 3.06
12 13 1.347707 AGTTTGGCGAAGAGATGGTGA 59.652 47.619 0.00 0.00 0.00 4.02
13 14 1.813513 AGTTTGGCGAAGAGATGGTG 58.186 50.000 0.00 0.00 0.00 4.17
14 15 2.567615 ACTAGTTTGGCGAAGAGATGGT 59.432 45.455 0.00 0.00 0.00 3.55
15 16 2.932614 CACTAGTTTGGCGAAGAGATGG 59.067 50.000 0.00 0.00 0.00 3.51
16 17 2.349886 GCACTAGTTTGGCGAAGAGATG 59.650 50.000 0.00 0.00 0.00 2.90
17 18 2.028112 TGCACTAGTTTGGCGAAGAGAT 60.028 45.455 0.00 0.00 0.00 2.75
18 19 1.343142 TGCACTAGTTTGGCGAAGAGA 59.657 47.619 0.00 0.00 0.00 3.10
19 20 1.728971 CTGCACTAGTTTGGCGAAGAG 59.271 52.381 0.00 0.00 0.00 2.85
20 21 1.070134 ACTGCACTAGTTTGGCGAAGA 59.930 47.619 0.00 0.00 35.67 2.87
21 22 1.512926 ACTGCACTAGTTTGGCGAAG 58.487 50.000 0.00 0.00 35.67 3.79
22 23 3.698250 ACTGCACTAGTTTGGCGAA 57.302 47.368 0.00 0.00 35.67 4.70
30 31 9.681062 AATGGTAATTTGTATAACTGCACTAGT 57.319 29.630 0.00 0.00 42.89 2.57
51 52 9.834789 TGTCCCCAACACACCAAATATAATGGT 62.835 40.741 7.18 7.18 41.69 3.55
52 53 4.959210 TCCCCAACACACCAAATATAATGG 59.041 41.667 6.03 6.03 43.84 3.16
53 54 5.420421 TGTCCCCAACACACCAAATATAATG 59.580 40.000 0.00 0.00 31.20 1.90
54 55 5.584913 TGTCCCCAACACACCAAATATAAT 58.415 37.500 0.00 0.00 31.20 1.28
55 56 4.999310 TGTCCCCAACACACCAAATATAA 58.001 39.130 0.00 0.00 31.20 0.98
56 57 4.659529 TGTCCCCAACACACCAAATATA 57.340 40.909 0.00 0.00 31.20 0.86
57 58 3.534357 TGTCCCCAACACACCAAATAT 57.466 42.857 0.00 0.00 31.20 1.28
59 60 3.935371 TGTCCCCAACACACCAAAT 57.065 47.368 0.00 0.00 31.20 2.32
67 68 1.507140 AGTCTCTTGTGTCCCCAACA 58.493 50.000 0.00 0.00 34.78 3.33
68 69 2.640316 AAGTCTCTTGTGTCCCCAAC 57.360 50.000 0.00 0.00 0.00 3.77
69 70 3.662759 AAAAGTCTCTTGTGTCCCCAA 57.337 42.857 0.00 0.00 0.00 4.12
70 71 3.662759 AAAAAGTCTCTTGTGTCCCCA 57.337 42.857 0.00 0.00 0.00 4.96
71 72 5.313712 TGATAAAAAGTCTCTTGTGTCCCC 58.686 41.667 0.00 0.00 0.00 4.81
72 73 5.998363 ACTGATAAAAAGTCTCTTGTGTCCC 59.002 40.000 0.00 0.00 0.00 4.46
73 74 7.355778 CAACTGATAAAAAGTCTCTTGTGTCC 58.644 38.462 0.00 0.00 0.00 4.02
74 75 7.012421 ACCAACTGATAAAAAGTCTCTTGTGTC 59.988 37.037 0.00 0.00 0.00 3.67
75 76 6.828785 ACCAACTGATAAAAAGTCTCTTGTGT 59.171 34.615 0.00 0.00 0.00 3.72
76 77 7.264373 ACCAACTGATAAAAAGTCTCTTGTG 57.736 36.000 0.00 0.00 0.00 3.33
77 78 7.682021 GCAACCAACTGATAAAAAGTCTCTTGT 60.682 37.037 0.00 0.00 0.00 3.16
78 79 6.638468 GCAACCAACTGATAAAAAGTCTCTTG 59.362 38.462 0.00 0.00 0.00 3.02
79 80 6.321181 TGCAACCAACTGATAAAAAGTCTCTT 59.679 34.615 0.00 0.00 0.00 2.85
80 81 5.827797 TGCAACCAACTGATAAAAAGTCTCT 59.172 36.000 0.00 0.00 0.00 3.10
81 82 6.072112 TGCAACCAACTGATAAAAAGTCTC 57.928 37.500 0.00 0.00 0.00 3.36
82 83 5.010012 CCTGCAACCAACTGATAAAAAGTCT 59.990 40.000 0.00 0.00 0.00 3.24
83 84 5.222631 CCTGCAACCAACTGATAAAAAGTC 58.777 41.667 0.00 0.00 0.00 3.01
84 85 4.039124 CCCTGCAACCAACTGATAAAAAGT 59.961 41.667 0.00 0.00 0.00 2.66
85 86 4.039124 ACCCTGCAACCAACTGATAAAAAG 59.961 41.667 0.00 0.00 0.00 2.27
86 87 3.964031 ACCCTGCAACCAACTGATAAAAA 59.036 39.130 0.00 0.00 0.00 1.94
87 88 3.571590 ACCCTGCAACCAACTGATAAAA 58.428 40.909 0.00 0.00 0.00 1.52
88 89 3.237268 ACCCTGCAACCAACTGATAAA 57.763 42.857 0.00 0.00 0.00 1.40
89 90 2.969821 ACCCTGCAACCAACTGATAA 57.030 45.000 0.00 0.00 0.00 1.75
90 91 2.969821 AACCCTGCAACCAACTGATA 57.030 45.000 0.00 0.00 0.00 2.15
91 92 2.969821 TAACCCTGCAACCAACTGAT 57.030 45.000 0.00 0.00 0.00 2.90
92 93 2.969821 ATAACCCTGCAACCAACTGA 57.030 45.000 0.00 0.00 0.00 3.41
93 94 3.320541 TCAAATAACCCTGCAACCAACTG 59.679 43.478 0.00 0.00 0.00 3.16
94 95 3.571590 TCAAATAACCCTGCAACCAACT 58.428 40.909 0.00 0.00 0.00 3.16
95 96 3.572255 TCTCAAATAACCCTGCAACCAAC 59.428 43.478 0.00 0.00 0.00 3.77
96 97 3.826157 CTCTCAAATAACCCTGCAACCAA 59.174 43.478 0.00 0.00 0.00 3.67
97 98 3.073798 TCTCTCAAATAACCCTGCAACCA 59.926 43.478 0.00 0.00 0.00 3.67
98 99 3.686016 TCTCTCAAATAACCCTGCAACC 58.314 45.455 0.00 0.00 0.00 3.77
99 100 4.393371 GTCTCTCTCAAATAACCCTGCAAC 59.607 45.833 0.00 0.00 0.00 4.17
100 101 4.565652 GGTCTCTCTCAAATAACCCTGCAA 60.566 45.833 0.00 0.00 0.00 4.08
101 102 3.055094 GGTCTCTCTCAAATAACCCTGCA 60.055 47.826 0.00 0.00 0.00 4.41
102 103 3.055094 TGGTCTCTCTCAAATAACCCTGC 60.055 47.826 0.00 0.00 0.00 4.85
103 104 4.826274 TGGTCTCTCTCAAATAACCCTG 57.174 45.455 0.00 0.00 0.00 4.45
104 105 5.284582 AGATGGTCTCTCTCAAATAACCCT 58.715 41.667 0.00 0.00 0.00 4.34
105 106 5.606505 GAGATGGTCTCTCTCAAATAACCC 58.393 45.833 0.00 0.00 45.97 4.11
117 118 2.870175 CGTAGGATGGAGATGGTCTCT 58.130 52.381 6.89 0.00 42.95 3.10
118 119 1.271102 GCGTAGGATGGAGATGGTCTC 59.729 57.143 0.00 0.00 42.66 3.36
119 120 1.333177 GCGTAGGATGGAGATGGTCT 58.667 55.000 0.00 0.00 0.00 3.85
120 121 0.318762 GGCGTAGGATGGAGATGGTC 59.681 60.000 0.00 0.00 0.00 4.02
121 122 0.105453 AGGCGTAGGATGGAGATGGT 60.105 55.000 0.00 0.00 0.00 3.55
122 123 0.605589 GAGGCGTAGGATGGAGATGG 59.394 60.000 0.00 0.00 0.00 3.51
123 124 0.605589 GGAGGCGTAGGATGGAGATG 59.394 60.000 0.00 0.00 0.00 2.90
124 125 0.543174 GGGAGGCGTAGGATGGAGAT 60.543 60.000 0.00 0.00 0.00 2.75
125 126 1.152525 GGGAGGCGTAGGATGGAGA 60.153 63.158 0.00 0.00 0.00 3.71
126 127 1.457643 TGGGAGGCGTAGGATGGAG 60.458 63.158 0.00 0.00 0.00 3.86
127 128 1.760875 GTGGGAGGCGTAGGATGGA 60.761 63.158 0.00 0.00 0.00 3.41
128 129 2.822399 GTGGGAGGCGTAGGATGG 59.178 66.667 0.00 0.00 0.00 3.51
129 130 2.417516 CGTGGGAGGCGTAGGATG 59.582 66.667 0.00 0.00 0.00 3.51
130 131 2.658321 ATCCGTGGGAGGCGTAGGAT 62.658 60.000 0.00 0.00 34.05 3.24
131 132 2.866523 AATCCGTGGGAGGCGTAGGA 62.867 60.000 0.00 0.00 34.05 2.94
132 133 2.432300 AATCCGTGGGAGGCGTAGG 61.432 63.158 0.00 0.00 34.05 3.18
133 134 1.227263 CAATCCGTGGGAGGCGTAG 60.227 63.158 0.00 0.00 34.05 3.51
134 135 1.046472 ATCAATCCGTGGGAGGCGTA 61.046 55.000 0.00 0.00 34.05 4.42
135 136 1.046472 TATCAATCCGTGGGAGGCGT 61.046 55.000 0.00 0.00 34.05 5.68
136 137 0.105964 TTATCAATCCGTGGGAGGCG 59.894 55.000 0.00 0.00 34.05 5.52
137 138 1.947456 GTTTATCAATCCGTGGGAGGC 59.053 52.381 0.00 0.00 34.05 4.70
138 139 2.172717 AGGTTTATCAATCCGTGGGAGG 59.827 50.000 0.00 0.00 34.05 4.30
139 140 3.560636 AGGTTTATCAATCCGTGGGAG 57.439 47.619 0.00 0.00 34.05 4.30
140 141 4.141574 CCTAAGGTTTATCAATCCGTGGGA 60.142 45.833 0.00 0.00 34.51 4.37
141 142 4.134563 CCTAAGGTTTATCAATCCGTGGG 58.865 47.826 0.00 0.00 0.00 4.61
142 143 4.777463 ACCTAAGGTTTATCAATCCGTGG 58.223 43.478 0.00 0.00 27.29 4.94
143 144 5.424757 TGACCTAAGGTTTATCAATCCGTG 58.575 41.667 0.00 0.00 35.25 4.94
144 145 5.687166 TGACCTAAGGTTTATCAATCCGT 57.313 39.130 0.00 0.00 35.25 4.69
145 146 6.765989 TGAATGACCTAAGGTTTATCAATCCG 59.234 38.462 0.00 0.00 35.25 4.18
146 147 7.775561 AGTGAATGACCTAAGGTTTATCAATCC 59.224 37.037 0.00 0.00 35.25 3.01
147 148 8.738645 AGTGAATGACCTAAGGTTTATCAATC 57.261 34.615 0.00 0.00 35.25 2.67
148 149 8.960591 CAAGTGAATGACCTAAGGTTTATCAAT 58.039 33.333 0.00 0.00 35.25 2.57
149 150 8.160765 TCAAGTGAATGACCTAAGGTTTATCAA 58.839 33.333 0.00 0.00 35.25 2.57
150 151 7.685481 TCAAGTGAATGACCTAAGGTTTATCA 58.315 34.615 0.00 0.00 35.25 2.15
151 152 8.561738 TTCAAGTGAATGACCTAAGGTTTATC 57.438 34.615 0.00 0.00 35.25 1.75
152 153 7.611855 CCTTCAAGTGAATGACCTAAGGTTTAT 59.388 37.037 0.00 0.00 32.25 1.40
153 154 6.940298 CCTTCAAGTGAATGACCTAAGGTTTA 59.060 38.462 0.00 0.00 32.25 2.01
154 155 5.770162 CCTTCAAGTGAATGACCTAAGGTTT 59.230 40.000 0.00 0.00 32.25 3.27
155 156 5.073144 TCCTTCAAGTGAATGACCTAAGGTT 59.927 40.000 0.00 0.00 32.25 3.50
156 157 4.597507 TCCTTCAAGTGAATGACCTAAGGT 59.402 41.667 0.00 0.00 33.92 3.50
157 158 5.165961 TCCTTCAAGTGAATGACCTAAGG 57.834 43.478 0.00 0.00 32.85 2.69
158 159 7.510549 TTTTCCTTCAAGTGAATGACCTAAG 57.489 36.000 0.00 0.00 33.01 2.18
159 160 8.359642 CAATTTTCCTTCAAGTGAATGACCTAA 58.640 33.333 0.00 0.00 33.01 2.69
160 161 7.523709 GCAATTTTCCTTCAAGTGAATGACCTA 60.524 37.037 0.00 0.00 33.01 3.08
161 162 6.739565 GCAATTTTCCTTCAAGTGAATGACCT 60.740 38.462 0.00 0.00 33.01 3.85
162 163 5.406477 GCAATTTTCCTTCAAGTGAATGACC 59.594 40.000 0.00 0.00 33.01 4.02
163 164 6.218746 AGCAATTTTCCTTCAAGTGAATGAC 58.781 36.000 0.00 0.00 33.01 3.06
164 165 6.409524 AGCAATTTTCCTTCAAGTGAATGA 57.590 33.333 0.00 0.00 33.01 2.57
165 166 7.327761 CAGTAGCAATTTTCCTTCAAGTGAATG 59.672 37.037 0.00 0.00 33.01 2.67
166 167 7.014615 ACAGTAGCAATTTTCCTTCAAGTGAAT 59.985 33.333 0.00 0.00 33.01 2.57
167 168 6.321181 ACAGTAGCAATTTTCCTTCAAGTGAA 59.679 34.615 0.00 0.00 0.00 3.18
168 169 5.827797 ACAGTAGCAATTTTCCTTCAAGTGA 59.172 36.000 0.00 0.00 0.00 3.41
169 170 6.076981 ACAGTAGCAATTTTCCTTCAAGTG 57.923 37.500 0.00 0.00 0.00 3.16
170 171 5.241728 GGACAGTAGCAATTTTCCTTCAAGT 59.758 40.000 0.00 0.00 0.00 3.16
171 172 5.474876 AGGACAGTAGCAATTTTCCTTCAAG 59.525 40.000 0.00 0.00 28.60 3.02
172 173 5.385198 AGGACAGTAGCAATTTTCCTTCAA 58.615 37.500 0.00 0.00 28.60 2.69
173 174 4.985538 AGGACAGTAGCAATTTTCCTTCA 58.014 39.130 0.00 0.00 28.60 3.02
174 175 5.938125 TGTAGGACAGTAGCAATTTTCCTTC 59.062 40.000 1.99 0.00 35.13 3.46
175 176 5.876357 TGTAGGACAGTAGCAATTTTCCTT 58.124 37.500 1.99 0.00 35.13 3.36
176 177 5.499004 TGTAGGACAGTAGCAATTTTCCT 57.501 39.130 0.00 0.00 37.28 3.36
177 178 6.569179 TTTGTAGGACAGTAGCAATTTTCC 57.431 37.500 0.00 0.00 0.00 3.13
178 179 7.649057 AGTTTTGTAGGACAGTAGCAATTTTC 58.351 34.615 0.00 0.00 0.00 2.29
179 180 7.502561 AGAGTTTTGTAGGACAGTAGCAATTTT 59.497 33.333 0.00 0.00 0.00 1.82
180 181 6.998673 AGAGTTTTGTAGGACAGTAGCAATTT 59.001 34.615 0.00 0.00 0.00 1.82
181 182 6.428159 CAGAGTTTTGTAGGACAGTAGCAATT 59.572 38.462 0.00 0.00 0.00 2.32
182 183 5.934625 CAGAGTTTTGTAGGACAGTAGCAAT 59.065 40.000 0.00 0.00 0.00 3.56
183 184 5.297547 CAGAGTTTTGTAGGACAGTAGCAA 58.702 41.667 0.00 0.00 0.00 3.91
184 185 4.799586 GCAGAGTTTTGTAGGACAGTAGCA 60.800 45.833 0.00 0.00 0.00 3.49
185 186 3.680458 GCAGAGTTTTGTAGGACAGTAGC 59.320 47.826 0.00 0.00 0.00 3.58
186 187 3.921021 CGCAGAGTTTTGTAGGACAGTAG 59.079 47.826 0.00 0.00 0.00 2.57
187 188 3.859627 GCGCAGAGTTTTGTAGGACAGTA 60.860 47.826 0.30 0.00 0.00 2.74
188 189 2.755650 CGCAGAGTTTTGTAGGACAGT 58.244 47.619 0.00 0.00 0.00 3.55
189 190 1.461127 GCGCAGAGTTTTGTAGGACAG 59.539 52.381 0.30 0.00 0.00 3.51
190 191 1.070134 AGCGCAGAGTTTTGTAGGACA 59.930 47.619 11.47 0.00 0.00 4.02
191 192 1.797025 AGCGCAGAGTTTTGTAGGAC 58.203 50.000 11.47 0.00 0.00 3.85
192 193 2.143122 CAAGCGCAGAGTTTTGTAGGA 58.857 47.619 11.47 0.00 0.00 2.94
193 194 1.197721 CCAAGCGCAGAGTTTTGTAGG 59.802 52.381 11.47 0.00 0.00 3.18
194 195 2.143122 TCCAAGCGCAGAGTTTTGTAG 58.857 47.619 11.47 0.00 0.00 2.74
195 196 2.143122 CTCCAAGCGCAGAGTTTTGTA 58.857 47.619 11.47 0.00 0.00 2.41
196 197 0.947244 CTCCAAGCGCAGAGTTTTGT 59.053 50.000 11.47 0.00 0.00 2.83
197 198 0.239347 CCTCCAAGCGCAGAGTTTTG 59.761 55.000 11.47 3.68 0.00 2.44
198 199 1.518903 GCCTCCAAGCGCAGAGTTTT 61.519 55.000 11.47 0.00 0.00 2.43
199 200 1.968540 GCCTCCAAGCGCAGAGTTT 60.969 57.895 11.47 0.00 0.00 2.66
200 201 2.359230 GCCTCCAAGCGCAGAGTT 60.359 61.111 11.47 0.00 0.00 3.01
201 202 4.400961 GGCCTCCAAGCGCAGAGT 62.401 66.667 11.47 0.00 0.00 3.24
211 212 3.469863 GACACGTGTTGGGCCTCCA 62.470 63.158 24.26 0.00 42.25 3.86
212 213 1.823169 TAGACACGTGTTGGGCCTCC 61.823 60.000 24.26 7.17 0.00 4.30
213 214 0.249398 ATAGACACGTGTTGGGCCTC 59.751 55.000 24.26 7.97 0.00 4.70
214 215 0.036388 CATAGACACGTGTTGGGCCT 60.036 55.000 24.26 16.73 0.00 5.19
215 216 0.036765 TCATAGACACGTGTTGGGCC 60.037 55.000 24.26 9.56 0.00 5.80
216 217 1.067142 TCTCATAGACACGTGTTGGGC 60.067 52.381 24.26 9.97 0.00 5.36
217 218 3.313012 TTCTCATAGACACGTGTTGGG 57.687 47.619 24.26 17.30 0.00 4.12
218 219 6.961359 TTTATTCTCATAGACACGTGTTGG 57.039 37.500 24.26 12.51 0.00 3.77
219 220 9.265938 CAATTTTATTCTCATAGACACGTGTTG 57.734 33.333 24.26 17.28 0.00 3.33
220 221 7.962918 GCAATTTTATTCTCATAGACACGTGTT 59.037 33.333 24.26 14.78 0.00 3.32
221 222 7.464358 GCAATTTTATTCTCATAGACACGTGT 58.536 34.615 23.64 23.64 0.00 4.49
222 223 6.624917 CGCAATTTTATTCTCATAGACACGTG 59.375 38.462 15.48 15.48 0.00 4.49
223 224 6.312918 ACGCAATTTTATTCTCATAGACACGT 59.687 34.615 0.00 0.00 0.00 4.49
224 225 6.705782 ACGCAATTTTATTCTCATAGACACG 58.294 36.000 0.00 0.00 0.00 4.49
225 226 7.962918 ACAACGCAATTTTATTCTCATAGACAC 59.037 33.333 0.00 0.00 0.00 3.67
226 227 8.039603 ACAACGCAATTTTATTCTCATAGACA 57.960 30.769 0.00 0.00 0.00 3.41
227 228 9.638300 CTACAACGCAATTTTATTCTCATAGAC 57.362 33.333 0.00 0.00 0.00 2.59
228 229 9.594478 TCTACAACGCAATTTTATTCTCATAGA 57.406 29.630 0.00 0.00 0.00 1.98
229 230 9.638300 GTCTACAACGCAATTTTATTCTCATAG 57.362 33.333 0.00 0.00 0.00 2.23
230 231 9.157104 TGTCTACAACGCAATTTTATTCTCATA 57.843 29.630 0.00 0.00 0.00 2.15
231 232 8.039603 TGTCTACAACGCAATTTTATTCTCAT 57.960 30.769 0.00 0.00 0.00 2.90
232 233 7.428282 TGTCTACAACGCAATTTTATTCTCA 57.572 32.000 0.00 0.00 0.00 3.27
233 234 8.175069 TGATGTCTACAACGCAATTTTATTCTC 58.825 33.333 0.00 0.00 0.00 2.87
234 235 8.039603 TGATGTCTACAACGCAATTTTATTCT 57.960 30.769 0.00 0.00 0.00 2.40
235 236 8.575454 GTTGATGTCTACAACGCAATTTTATTC 58.425 33.333 0.00 0.00 38.23 1.75
236 237 8.447787 GTTGATGTCTACAACGCAATTTTATT 57.552 30.769 0.00 0.00 38.23 1.40
247 248 6.562270 GCATACATAGCGTTGATGTCTACAAC 60.562 42.308 0.00 0.00 42.54 3.32
248 249 5.462068 GCATACATAGCGTTGATGTCTACAA 59.538 40.000 2.82 0.00 38.47 2.41
249 250 4.982295 GCATACATAGCGTTGATGTCTACA 59.018 41.667 2.82 0.00 38.47 2.74
250 251 5.223382 AGCATACATAGCGTTGATGTCTAC 58.777 41.667 2.82 0.00 38.47 2.59
251 252 5.453567 AGCATACATAGCGTTGATGTCTA 57.546 39.130 2.82 0.00 38.47 2.59
252 253 4.327982 AGCATACATAGCGTTGATGTCT 57.672 40.909 2.82 0.00 38.47 3.41
253 254 4.507756 TCAAGCATACATAGCGTTGATGTC 59.492 41.667 2.82 0.00 38.47 3.06
254 255 4.441792 TCAAGCATACATAGCGTTGATGT 58.558 39.130 4.73 4.73 40.59 3.06
255 256 5.602458 ATCAAGCATACATAGCGTTGATG 57.398 39.130 0.00 0.00 37.88 3.07
256 257 5.639506 GGTATCAAGCATACATAGCGTTGAT 59.360 40.000 13.26 13.26 39.50 2.57
257 258 4.988540 GGTATCAAGCATACATAGCGTTGA 59.011 41.667 0.00 0.00 39.50 3.18
258 259 4.749598 TGGTATCAAGCATACATAGCGTTG 59.250 41.667 0.00 0.00 39.50 4.10
259 260 4.956085 TGGTATCAAGCATACATAGCGTT 58.044 39.130 0.00 0.00 39.50 4.84
260 261 4.600692 TGGTATCAAGCATACATAGCGT 57.399 40.909 0.00 0.00 39.50 5.07
261 262 4.749598 TGTTGGTATCAAGCATACATAGCG 59.250 41.667 0.00 0.00 39.50 4.26
262 263 6.260936 AGTTGTTGGTATCAAGCATACATAGC 59.739 38.462 0.00 0.00 39.50 2.97
286 287 3.322538 CGTCGCACGTAAACAACAG 57.677 52.632 0.00 0.00 36.74 3.16
304 305 3.152983 CACGTCGATTATGCAACACAAC 58.847 45.455 0.00 0.00 0.00 3.32
312 313 4.389664 AATACATGCACGTCGATTATGC 57.610 40.909 0.00 10.56 39.88 3.14
359 360 8.786826 TTTTCTTCCGTGTATTCACATATCTT 57.213 30.769 3.25 0.00 44.02 2.40
366 367 7.494625 TCCTCATATTTTCTTCCGTGTATTCAC 59.505 37.037 0.00 0.00 40.79 3.18
368 369 7.041984 GGTCCTCATATTTTCTTCCGTGTATTC 60.042 40.741 0.00 0.00 0.00 1.75
369 370 6.766467 GGTCCTCATATTTTCTTCCGTGTATT 59.234 38.462 0.00 0.00 0.00 1.89
376 377 4.127907 GACGGGTCCTCATATTTTCTTCC 58.872 47.826 0.00 0.00 0.00 3.46
377 378 4.127907 GGACGGGTCCTCATATTTTCTTC 58.872 47.826 10.60 0.00 46.16 2.87
434 458 3.976169 GAGCATCTACAGCCAGACTTAG 58.024 50.000 0.00 0.00 0.00 2.18
460 484 4.036852 TCTGATACGCTGGTCTTATGTGAG 59.963 45.833 0.00 0.00 0.00 3.51
468 492 4.402793 ACTGTTATTCTGATACGCTGGTCT 59.597 41.667 0.00 0.00 0.00 3.85
469 493 4.683832 ACTGTTATTCTGATACGCTGGTC 58.316 43.478 0.00 0.00 0.00 4.02
471 495 4.982916 GGTACTGTTATTCTGATACGCTGG 59.017 45.833 0.00 0.00 0.00 4.85
476 500 6.140303 TGTCGGGTACTGTTATTCTGATAC 57.860 41.667 0.00 0.00 35.30 2.24
479 503 5.244402 TCTTTGTCGGGTACTGTTATTCTGA 59.756 40.000 0.00 0.00 35.30 3.27
480 504 5.475719 TCTTTGTCGGGTACTGTTATTCTG 58.524 41.667 0.00 0.00 35.30 3.02
483 507 6.105397 TCTTCTTTGTCGGGTACTGTTATT 57.895 37.500 0.00 0.00 35.30 1.40
490 514 4.573607 ACACTTTTCTTCTTTGTCGGGTAC 59.426 41.667 0.00 0.00 0.00 3.34
493 517 4.213482 CCTACACTTTTCTTCTTTGTCGGG 59.787 45.833 0.00 0.00 0.00 5.14
496 520 5.751990 TCGACCTACACTTTTCTTCTTTGTC 59.248 40.000 0.00 0.00 0.00 3.18
497 521 5.667466 TCGACCTACACTTTTCTTCTTTGT 58.333 37.500 0.00 0.00 0.00 2.83
502 526 5.295152 TCCTTTCGACCTACACTTTTCTTC 58.705 41.667 0.00 0.00 0.00 2.87
510 534 2.804527 GTTGGTTCCTTTCGACCTACAC 59.195 50.000 0.00 0.00 40.09 2.90
551 575 2.041686 GGGGCGGTCGCAACAAATA 61.042 57.895 17.21 0.00 44.11 1.40
592 616 4.948004 CAGCCTCGTGGATATAGTGGTATA 59.052 45.833 7.92 0.00 34.57 1.47
763 787 1.063649 CGGGTCCACATACGTCGAG 59.936 63.158 0.00 0.00 0.00 4.04
787 811 1.550072 CCTAATTTGGGTTGCCACTGG 59.450 52.381 0.00 0.00 0.00 4.00
796 820 2.439519 CGCCCGCCTAATTTGGGT 60.440 61.111 8.06 0.00 45.19 4.51
906 933 4.090090 GAGGGATAGGATCGATGAGGAAA 58.910 47.826 0.54 0.00 0.00 3.13
935 962 1.074471 GGGTATGGCCAGGGAGAGA 60.074 63.158 13.05 0.00 39.65 3.10
1027 1086 2.766400 GGAGAGCCGTGACGAGGAG 61.766 68.421 6.54 0.00 0.00 3.69
1098 1157 4.359706 ACATCGAAAAGAACAAACAAGCC 58.640 39.130 0.00 0.00 0.00 4.35
1131 1190 9.807649 CAGAGCAGGCATTAATTAACTAATTTT 57.192 29.630 0.00 0.00 37.16 1.82
1132 1191 7.922811 GCAGAGCAGGCATTAATTAACTAATTT 59.077 33.333 0.00 0.00 37.16 1.82
1134 1193 6.015940 GGCAGAGCAGGCATTAATTAACTAAT 60.016 38.462 0.00 0.00 0.00 1.73
1136 1195 4.821805 GGCAGAGCAGGCATTAATTAACTA 59.178 41.667 0.00 0.00 0.00 2.24
1138 1197 3.548818 CGGCAGAGCAGGCATTAATTAAC 60.549 47.826 0.00 0.00 0.00 2.01
1426 1487 2.768344 TTCGGATCCCTCCTGGCC 60.768 66.667 6.06 0.00 39.65 5.36
1453 1514 0.391793 CGGCAAAGAGGGAGGAGAAC 60.392 60.000 0.00 0.00 0.00 3.01
1460 1521 2.114488 TTTACCGCGGCAAAGAGGGA 62.114 55.000 28.58 0.00 35.27 4.20
1465 1526 2.095466 TCAAAGATTTACCGCGGCAAAG 60.095 45.455 28.58 12.81 0.00 2.77
1467 1528 1.524848 TCAAAGATTTACCGCGGCAA 58.475 45.000 28.58 17.92 0.00 4.52
1469 1530 1.668751 TCATCAAAGATTTACCGCGGC 59.331 47.619 28.58 8.62 0.00 6.53
1543 1605 1.747355 GGGGAAACGTACAGATCGAGA 59.253 52.381 0.00 0.00 0.00 4.04
1597 1665 7.579589 TGATTTTATTGCAAAGCACATACAC 57.420 32.000 1.71 0.00 38.71 2.90
1598 1666 7.220491 CGATGATTTTATTGCAAAGCACATACA 59.780 33.333 1.71 0.00 38.71 2.29
1599 1667 7.431960 TCGATGATTTTATTGCAAAGCACATAC 59.568 33.333 1.71 0.00 38.71 2.39
1601 1669 6.254157 GTCGATGATTTTATTGCAAAGCACAT 59.746 34.615 1.71 5.15 38.71 3.21
1650 1723 9.820725 CTGGGCAAGAAATTCATGAAAAATATA 57.179 29.630 13.09 0.00 0.00 0.86
1651 1724 8.323567 ACTGGGCAAGAAATTCATGAAAAATAT 58.676 29.630 13.09 0.00 0.00 1.28
1652 1725 7.603404 CACTGGGCAAGAAATTCATGAAAAATA 59.397 33.333 13.09 0.00 0.00 1.40
1653 1726 6.428771 CACTGGGCAAGAAATTCATGAAAAAT 59.571 34.615 13.09 1.28 0.00 1.82
1654 1727 5.759273 CACTGGGCAAGAAATTCATGAAAAA 59.241 36.000 13.09 0.00 0.00 1.94
1691 1768 4.281941 AGCAGAGTACTGTCATCAAACTGA 59.718 41.667 0.00 0.00 45.04 3.41
1721 1806 6.073385 GCTTAATAATTAGCTCCGGTACCAAC 60.073 42.308 13.54 0.00 0.00 3.77
1756 1841 7.465353 TTCTCACAATCAGATTGCCATTTTA 57.535 32.000 21.22 0.94 43.98 1.52
1757 1842 5.988310 TCTCACAATCAGATTGCCATTTT 57.012 34.783 21.22 0.00 43.98 1.82
1767 1855 4.163649 AGAGGCATGATTCTCACAATCAGA 59.836 41.667 0.00 0.00 39.69 3.27
1768 1856 4.273724 CAGAGGCATGATTCTCACAATCAG 59.726 45.833 0.00 0.00 39.69 2.90
1884 1972 4.714632 GCCCTTATATTTGCAGTACTCCA 58.285 43.478 0.00 0.00 0.00 3.86
1885 1973 3.746492 CGCCCTTATATTTGCAGTACTCC 59.254 47.826 0.00 0.00 0.00 3.85
1886 1974 4.377897 ACGCCCTTATATTTGCAGTACTC 58.622 43.478 0.00 0.00 0.00 2.59
1887 1975 4.417426 ACGCCCTTATATTTGCAGTACT 57.583 40.909 0.00 0.00 0.00 2.73
1888 1976 6.424683 GTTTACGCCCTTATATTTGCAGTAC 58.575 40.000 0.00 0.00 0.00 2.73
1923 2011 3.293311 TCTCTCGTAAAACCAACCGAG 57.707 47.619 0.00 0.00 46.06 4.63
1954 2042 0.968405 TCATGAAGCCAAAACTGCCC 59.032 50.000 0.00 0.00 0.00 5.36
2081 2171 5.340803 TGAAGCATCGATCAGTAACTACAC 58.659 41.667 0.00 0.00 0.00 2.90
2122 2224 1.792993 GCAAGCACATGAAGCATCGAC 60.793 52.381 15.23 0.00 0.00 4.20
2301 2466 3.951979 AAGCAGAAACAAGTTGTCGAG 57.048 42.857 9.40 1.42 0.00 4.04
2316 2481 4.992381 AAACAACTAAGCGACTAAGCAG 57.008 40.909 0.00 0.00 40.15 4.24
2351 2516 0.842635 GATCTGACTTGGGATGCCCT 59.157 55.000 0.00 0.00 45.70 5.19
2352 2517 0.179006 GGATCTGACTTGGGATGCCC 60.179 60.000 0.00 0.00 45.71 5.36
2353 2518 0.533755 CGGATCTGACTTGGGATGCC 60.534 60.000 0.00 0.00 0.00 4.40
2354 2519 1.162800 GCGGATCTGACTTGGGATGC 61.163 60.000 5.48 0.00 0.00 3.91
2355 2520 0.178767 TGCGGATCTGACTTGGGATG 59.821 55.000 5.48 0.00 0.00 3.51
2356 2521 0.911769 TTGCGGATCTGACTTGGGAT 59.088 50.000 5.48 0.00 0.00 3.85
2357 2522 0.690192 TTTGCGGATCTGACTTGGGA 59.310 50.000 5.48 0.00 0.00 4.37
2358 2523 0.804989 GTTTGCGGATCTGACTTGGG 59.195 55.000 5.48 0.00 0.00 4.12
2359 2524 0.804989 GGTTTGCGGATCTGACTTGG 59.195 55.000 5.48 0.00 0.00 3.61
2360 2525 0.443869 CGGTTTGCGGATCTGACTTG 59.556 55.000 5.48 0.00 0.00 3.16
2361 2526 0.034896 ACGGTTTGCGGATCTGACTT 59.965 50.000 5.48 0.00 0.00 3.01
2362 2527 0.389948 GACGGTTTGCGGATCTGACT 60.390 55.000 5.48 0.00 0.00 3.41
2363 2528 1.683790 CGACGGTTTGCGGATCTGAC 61.684 60.000 5.48 0.00 0.00 3.51
2364 2529 1.445410 CGACGGTTTGCGGATCTGA 60.445 57.895 5.48 0.00 0.00 3.27
2365 2530 3.081133 CGACGGTTTGCGGATCTG 58.919 61.111 0.00 0.00 0.00 2.90
2366 2531 2.813908 GCGACGGTTTGCGGATCT 60.814 61.111 0.00 0.00 0.00 2.75
2367 2532 2.361427 GATGCGACGGTTTGCGGATC 62.361 60.000 6.49 6.49 45.32 3.36
2368 2533 2.435938 ATGCGACGGTTTGCGGAT 60.436 55.556 0.00 0.00 34.37 4.18
2369 2534 3.115892 GATGCGACGGTTTGCGGA 61.116 61.111 0.00 0.00 34.37 5.54
2370 2535 4.499023 CGATGCGACGGTTTGCGG 62.499 66.667 0.00 0.00 34.37 5.69
2371 2536 3.680072 GACGATGCGACGGTTTGCG 62.680 63.158 0.00 0.00 34.37 4.85
2372 2537 2.095843 GACGATGCGACGGTTTGC 59.904 61.111 0.00 0.00 37.61 3.68
2373 2538 2.776072 GGACGATGCGACGGTTTG 59.224 61.111 0.00 0.00 37.61 2.93
2374 2539 2.807895 CGGACGATGCGACGGTTT 60.808 61.111 0.00 0.00 37.61 3.27
2375 2540 3.740397 TCGGACGATGCGACGGTT 61.740 61.111 0.00 0.00 34.66 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.