>input_sequence_81706
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------------------ATGGCCACTCCAAGATTTCTCGCCATCCTCCTCGTCACGGCTCTCCTCGCGCTTTCCTTCTC
GCAAGGTACGCATGATCTGGAATATCAATGCCCACCGGCTTGTTTGTTCTTTTCGATGTCAATCAGGTAAAAATTAG--T
TAATTAATGCCTGCTCTGCCGTGGACGGATGGGTTCAGGGGCGGTGTTGGTGGTGGAGGGCAGGAAGGTGCAGGTGATGA
GGGCGGTGGGGCGGTGGCGCTCGCCCCTCCGCGGCGTCCGGTTGCAGGAGCAGCAGGAGGGCGGCGGGATGGTGTCGACG
GTGATGGACTACTCGGAACCCAAGGCCAACACCAACCCCCGCGGCAGCGTGCCCGCCGCGCCGGAGGACCCCACATCGCC
GCCGTGGCACTGA-------------------------------------------------------------------
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>chr5D_1_TraesCS5D01G238900
ATTACACTTGTATCACCATCTCTTCGCCAAACTAGTGCAGTTATACAAATTACCATTATATTTGGTGTGTTGGGGACACA
AGAGACTTTTTATCAGTTGGTTGCAGGGTTATTTGAGAGAGACCATCTCCATCCTACGCCTCCCACGGATTGATAAACCT
TAGGTCATTCACTTGAAGGAAAATTGCTACTGTCCTACAAAACTCTGCGCTTGGAGGCCCAACACGTGTCTATGAGAATA
AAATTGCGTTGTAGACATCAACGCTATGTATGCTTGATACCAACAACTGTTGTTTACGTGCGACGTTGTGTTGCATAATC
GACGTGCATGTATTTGCATGGATTTGAGAGTCCAGATTTAAGATATGTGAATACACGGAAGAAAATATGAGGACCCGTCC
GGATGTGTCCGCGGGCGT-----------------------TGAGGGGCCGGATTTGCTAAGTCTGGCTGTAGATGCTCT
AAGCTCACATAAGACCAGCGTATCAGAATAACAGTACCCGACAAAGAAGAAAAGTGTAGGTCGAAAGGAACCAACCTACA
GACACACGACCACATATTTGTTGCGACCGCCCCTGGAAAAGGAAGGTTGTTTTCATATACCACTATATCCACGAGGCTGC
ATAGCGACAGGAGTTTTTCTTATTTGACACCATACACATAAGATTCCAAAGCAAAAAATAAATAAAAGACACCACATACT
GACAGAGGTTCATTTGTCCCACGACGACCTTTGTCTATTTCATCAATTTTTCTATTTCGTCAATTTCTCGACGTATGTGG
ACCCGACCTGCCAGTGGCAACCCAAATTAGGCGGGCG--TGACGCCGCCCACTGCTCACGCAAGGCGACCCCCCG-TCGG
CGTCTTCGAAGCCTCCGAAAGCCTCATTTAAAGCCCACGAAACCGCATCCTTTTTCCTCATCGATCCTATCCCTCCCCTC
CT-----CTCTCCCTGGCCATACCCAAG---------AACACA--------GCACTTCCCATCTCAACTCCAC-------
---TCCGGTCCGGCCGCTATGGCCACTCCAAGATTTCTCGCCATCCTCCTCGTCACGGCTCTCCTCGCGCTTTCCTTCTC
GCAAGGTACGCATGATCTGGAATATCAATGCCCACCGGCTTGTTTGTTCTTTTCGATGTCAATCAGGTAAAAATTAG--T
TAATTAATGCCTGCTCTGCCGTGGACGGATGGGTTCAGGGGCGGTGTTGGTGGTGGAGGGCAGGAAGGTGCAGGTGATGA
GGGCGGTGGGGCGGTGGCGCTCGCCCCTCCGCGGCGTCCGGTTGCAGGAGCAGCAGGAGGGCGGCGGGATGGTGTCGACG
GTGATGGACTACTCGGAACCCAAGGCCAACACCAACCCCCGCGGCAGCGTGCCCGCCGCGCCGGAGGACCCCACATCGCC
GCCGTGGCACTGATCGATCGACGCATTTGCGTGTAGAGGACGAAGAGGCCAGGAGGGATCCGAACGAACGGCTGTTCTCC
TCCCTCTTTGCC-GCGGTAAATCTTTGATGAGTTGGTTAATCTGGAGAACTGTATGTATACTGCTTATGTTTTGAGTTTT
GATCTCTCGATCTGTACGTTTCC------CCCCTGCATGCTGCCCATCTGTACAACCCATCCATGTGTATGTGCTTTGCA
ATAAAATCATCGACATTGTGCCATTGTT-----CCATGTACTTATATT----TTTCATGAATTTCTTGCCCAGTGTGCAT
GCCAGTTTCAGTT-----TGATGAC---AGTACTCTGCTGGTAACGTTGGTACCGGAGCTAATTATTAAGCAGGAACTAA
TA---AAATGGCAATCTGATTGTGAGAATCATGCCTCTGTCACCTCCGAGCAGACAGCTGAGTGATCATTAGGCTAGGCC
ACACCTGCTGCAACATGCAGCAGAGTAGAGGCATCTTCGACTCTCTTGGTATGGAGTACTGCAAATATAAGGGCGTAAAC
CAGACACAAGCTCGGTTGGTTTTACGAGAGAATCAAAGGTCGGGCAGTTTTGGCTTCATGAGGT--ACTGATACCACAAA
TGGTTTCTTTTTAGCGAATTACCACAAATGATGTTTGATCTGTGGCCTAGGCCTAATCTTAGTTGGTGTCAACTTGCTAA
CATTTGCTCTGTGTAGTTAC------TGATCGATGCTTCATACCCTGCAAAA------AAAAAG----TCGATGCTTCAT
GTGCTTGCAACTGTGGTTGCCACTTGCCACGCCATTGCTTTCCC-GCACAACAACAGGGCATGGGCTTTGCCAAAA----
--------------------------AA----------------------------TATATGTCAGTGCATGGGCACCGT
CTGCGGTCAACGCATTGATCAAGGTGCACATATACGTGAGCTGGTAGTTCTTGAGTTACGTACAGCTCGACAACTTGTTT
CTGCTTAGTCGCTTAGTTGTTTAGTCCTTAACATAAGGGCATCCCAAGTCAGATCCGCAAACCGTCGCATCGTCCGA
>chr5A_260
AACA----------------------------------------------------------------------------
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-----------------------CTATGTATGCTTGATATCAACAATTGTTGTTTACGTGCGACATTGTGTTACATAATC
GATGTGCATGTATTTGCATGAATTTGAGAGTCCAGATTTCAAATATATAGATACACAAAAGGAAATATGAGGACCCGTCC
GGATGCATCCACGGGCGTGCCCGGACGCGGCCGCGTGGATTTGAGGGGCCGGATTTGACAAGTCCAGTTGTAGATGCTCT
AAGGTCACATAGAAACAGCTTACTAGGATAACAATAACCACCAAAAAAGAAAAATGTAGGTCGAAAGGAACCAACCTACA
GGCACACGACCACAGATTTGTTGCGACCGCCCCAGGAAAAGGAAGGTTGTTTTCA--TACCACTATATCCACGAGGCTGC
ATAGCGACAGGAGTTTTTCTTATTTGACACCATACACATAAGATTCCAAAGCAAAAA-TAAATAAAAGACACCACAAACT
GACAGAGG-TCATTTGTCCCACGACGACCTTTGTCTATATCATCCATTTTTCTATTTCGTCAATATTTCGGCGTATGTGG
ACCCGAGCTGTCAGTGGCATCCCAAATTAGGCGGGCGCCTGACCCCGCCCACTGCTCACGCAAGGCGACCCCCCCATCGG
CGTCTTCGAAGCCTCCGAAAGCCTCATTTAAAGCCCACGAAACCGCATCCTTCTTCCTCATCGATCCTATCCCTCCCCTC
CCCGG--CTCCCCCTGGCCATACGCCCATACCCAAGAAACACA--------GCACTTCCCATCTCAACTCCACTCCACTC
CGGTCCGGTCCGGCCGCTATGGCCACTCCAAGATTTCTCGCCGTCATCCTCGTCGCGGCTCTCCTCGCGCTTTCCTTCTC
GCAAGGTACGCATGAACTGGAATATCAATGCCCACCCGCTTGTTTGTTCTTTTCGATGCCAATCAGGTAGC---AAAGAT
TAATTAATGCTTGCTCTGCCGTGGACGGATGGGTGCAGGGGCGGTGGTGGTGGTGGAGGGCAGGAAGGTGCAGGTGATGA
GGGCGGTGGGGCGGTGGCGCTCGCCCCTCCGCGGCGTCCGGTTGCAGGAGCAGCAGGAGGGCGGCGGGATGGTGTCGACG
GTGATGGACTACTCGGAACCCAAGGCCAACACCAACCCCCGCGGCAGCGTGCCCGCCGCGCCGGAGGACCCCACCTCGCC
GCCGTGGCACTGATCGATCGACGCATTTGCGTGTAGAGGACGAAAACGCCAGGAGGGATCCGAACGAACGGCTCTTCTCC
CCCCTGTCTTCCGGCGGTAAATCTTTGATGAGTTGGTTGATCTGGAGAATTGTATT--TAGTGCTTATGTTTTGAGTTTT
TATCCCTCGATCTGTACGTTTCC------CCCCTGCATGCTGCC-ATCTGTACAACCCATCT----ATGTGTGCTCTGCA
ATAAGATCATCAACATTGTGCCATTGAT-----GCATATATGGTGGATGCCCTTCCATGAATTTCTTGCCCAGTGTGCAT
GGCAGTT-CAGTT-----TGATGAGAGGAGTACTATGCGGGTAACCTTGGTACCGGAGCTAATTATTAAGCAGGAACTAA
CGAAGAAATGGCAAATTGATTGTGAGAATCATGCCTCTGTCTCCTCCGAGCAGACAGCCGAGTGATCATTAGGCTAGGCC
ACAGCTGCTGCAACATGCAGCAGAGTAGAGGCATCTTCGACTCTCTTGGTA-----TACTGC--------------AAAC
CAGACACAAGTTCGGTTGGTTTTACGAGAGAATAAAAGGTCTGGCAGTTTTGGCTTCATGAGGTACACTGATACCACAAA
TGGTTTCTTTTTAGCGAATTACCACAAATGATGTTTGATCTGTGGCCTAGGCCTAATGTTAGTTGGTGTCAACTTGCTAA
CATTTGCTCTATGTAGTTACTATATATGATCGATGCTTCATACCCTGCCAAA------AAAAAAAAGATCGATGCTTCAT
G--CTTGCAAATGTGGTTGCCACTTGCGACGCCATTGCTTTCCCGGCACAACAACAGGGCATGGGCTTTGCCAAAATAAA
AATCAGGGCATGGGCTTTGCCAAAAAAA----------------------------TATATGTCAGTGCATGGGCAGCGT
CTGCGGTCAACGCATTGATCAAGGTGCACATATACGTGAGCTGGTAGTTCTTGAGTTACGTACAGATCGGCAACTTGTTT
TTGCTTAGTCCCTTAGTTGCTTAGTCCTTAACATA------------------------------------------
>chr5B_538
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GACACACGATTACAGATTTGTTGTAACCGCCGCT-GAGAAGGAAGGTTGTTTTCGCACT--ACTATATCCACGAGGCTGC
GTAGCGACAGGAGTTTTTCTTA-TTGACACCATTTACATAAGATTCCAAAGCAAAAAAT-AATAAAAGACACCACATACT
GACAGAGGTTCATTTGTCCCACGACGACCTTTGTCTATTTCACCATTTTTTCTATTTCGTGAATTTGTCGACGTATGTGG
ACCCGAGCTGTCGGTGGCATCCCAAATTAGGCGGGCGCGTGACCCCGCCCACTGCTCACGCAAGGCGACCCCC--ATCGG
CGTCTTCGAAGCCTCCGAAAGCCTCATTTAAAGCCCACGAAACCGCATCCTTCTTCCCCATCGATCCTATCCCTCCCCTC
CCCTCTCCTCTCCCTGGCCATACCCAAG---------AACACACCACTTCGGCACTTCCCATCTCAACTCC---------
---TCCGGTCCGGCCGCTATGGCCGCTCCAAGATTTCTCGCCATCATCCTCGTAGCGGCTCTCCTCGCGCTTTCCTTCTC
GCAAGGTACGTATGATCTGGAATATCAATGCCCACCCGCTTGTTTGTTCTTTTCGATGCCAATCAGGTAGTAGTAAAGAT
TAATTAATGCCTGCTCTGCCGTGGACGGATGGGTTCAGGGGCGATGTTGGTGGTGGAGGGCAGGAAGGTGCAGGTGATGA
GGGCGGTGGGGCGGTGGCGCTCGCCCCTCCGCGGCGTCCGGTTGCAGGAGCAGCAGGAGGGCGGCGGGATGGTGTCGACG
GTGATGGACTACTCGGAACCCAAGGCCAACACCAACCCCCACGGCAGCGTGCCCGCCGCGCCGGAGGACCCCACATCGCC
GCCGTGGCACTGATCGATCGACGCATTTGCGTGTAAAAGACGAAGAATTGTA----------------------------
----TGTCTAACGGCGGTAAATCTTA-ATGACTTGGTTAATCTGGAGAATTGTATGTATACTGCTTATGTTTTGAGTTTT
GATCCCCCGTTCTGTACGGCCCCCCTCCTCCTCTGCATGCTGGCCATCTGTACAACCCATACATCCATGTGTGCTTTGCA
ATAAAATCATCAACATTGTGCCATTGTTTTGTTGCATATATAGTGGAGTACCTTTCAGGAATTTCTTGCCCAGTA--CAT
GCCAGTT-CAGTTTCACTTGATGACAGGAGTACTCTGCTGGTAACCTTAGTACCGGAGCTAATTATTAAGCAGGAACTAA
CGAAGAAATGGCAAATTGATTGTGAGAATCATGCCTCTGTCTCCTCCGAGCAGACAGCTGAGTGATCATTAGGCTAGGCC
ACACCTGCTGCAACATGCAGCAGAGTAGAGGCATCTTCGACTCTG--GGTA-----TACTGCAAATATAAGGGCGTAAAT
CAGACACAAGTTCGGTTGGTTTTACGAGAGAATCAAAGGTCTGGCAGTTTTGGCTTCATGAGGTAC--TGATACCACAAA
TGGTTTCTTTTTAGCGAATTACCACAAATGATGTTTGATCTGTGGCCTAGGCCTAATGTTAGTTGGTGTCAACTTGTTAA
CATTTGCTGTATGTAGTTAC----TATGATCGATGCTTCATACCCCGCCAAAAAAAAGAAAAAAAAGATCGATGCTTCAT
G--CTTGCAACTGTGGTTGCCACTTGCCACGCCATTGCTTTCCCGGTACAACAACAGGGCATGGGCTTTGCCAAAA----
--------------------------AAAAATCAGGGCGTGGGCTTTGCCAAAAAATATATGTCAGTGCATGGGCACCGT
CTGCGGTCAACGCATTGATCAAGGTGCACATATACGTGAGCTGGTAGTTCTTGAGTTACGTACAGATCGACAACTTGTTT
TTGCTTAGTCGCTTAGTTTTTT-------------------------------------------------------
>SNPs
-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS----------------S------S-----------------S-------S-------
--S-----------------S------------------S-S----S-SS------SS---S------------------
-----SS---S----------------------------------------------SS-----SS-S------------
---S-------SS-S----S--SS--S------S--S--SS----S-------S--------------------------
--------------S----------------------------------------S------------------------
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------------------------------------------------------------------S-------------
------S---S--------S-----------------------S------------------------------S-----
----------------------------------------------------S---------------------------
-S------------------------------------------------------------------------------
---------------------------------------------S--------S-------------------------
------------------------------------S---------------------S----------SS-S-S-S---
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----------------------------------------------S--------------------------S------
S----S-S-S---------------------------------------S------------------------------
----S-----------------------------------------------------------SSS-S-----------
-----------S---------------------S---S--SSSSSSS---------------------------------
-------S-------------------------------------S----------------------------------
SS------------SS-------------------------S--------------------------------------
---------------------------------------------------SSSSS------------------------
----------S------------------------------S--------------------------------------
---------------------------------------------------------S----------------------
----------S-------------------------------------S--------------S----------------
-SS-----------------------------------------------------------------------------
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-----------------------------------------------------------------S--------------
S----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_234
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------------------------------------------------------AGGCCCAACACGTGTCTATG------
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>reverse_1514
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-------------------------------------------------------------------------GTTCTCC
TCCCTCTTTGCCG-------------------------------------------------------------------
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