Multiple sequence alignment - TraesCS5D01G236700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G236700 chr5D 100.000 2948 0 0 1 2948 345081965 345084912 0.000000e+00 5445.0
1 TraesCS5D01G236700 chr5D 77.949 195 34 4 2282 2468 103632110 103631917 2.400000e-21 113.0
2 TraesCS5D01G236700 chr5B 92.140 1883 91 26 599 2440 406528852 406526986 0.000000e+00 2604.0
3 TraesCS5D01G236700 chr5B 93.231 458 29 1 2491 2948 406526987 406526532 0.000000e+00 673.0
4 TraesCS5D01G236700 chr5B 85.256 156 11 6 54 207 406537305 406537160 1.830000e-32 150.0
5 TraesCS5D01G236700 chr5B 89.231 65 4 3 340 402 26841954 26842017 8.760000e-11 78.7
6 TraesCS5D01G236700 chr5B 81.188 101 15 4 2410 2510 333024816 333024912 8.760000e-11 78.7
7 TraesCS5D01G236700 chr5A 93.477 1579 59 14 694 2238 446638063 446636495 0.000000e+00 2305.0
8 TraesCS5D01G236700 chr5A 89.130 322 20 3 2241 2550 446636234 446635916 1.280000e-103 387.0
9 TraesCS5D01G236700 chr5A 93.798 129 8 0 570 698 446638282 446638154 8.340000e-46 195.0
10 TraesCS5D01G236700 chr7B 85.897 156 18 4 218 371 479634511 479634358 2.350000e-36 163.0
11 TraesCS5D01G236700 chr7B 86.538 52 5 2 2875 2925 589709252 589709302 4.100000e-04 56.5
12 TraesCS5D01G236700 chr7B 96.774 31 1 0 340 370 364931806 364931776 5.000000e-03 52.8
13 TraesCS5D01G236700 chr2D 77.934 213 22 14 2741 2937 277682249 277682452 3.110000e-20 110.0
14 TraesCS5D01G236700 chr2D 80.159 126 24 1 2344 2469 565153613 565153489 3.130000e-15 93.5
15 TraesCS5D01G236700 chr1A 78.531 177 27 5 2336 2511 344467197 344467031 4.020000e-19 106.0
16 TraesCS5D01G236700 chr2A 85.294 102 14 1 2331 2431 521602048 521602149 1.450000e-18 104.0
17 TraesCS5D01G236700 chr2A 82.692 104 16 2 2407 2510 14724885 14724784 1.130000e-14 91.6
18 TraesCS5D01G236700 chr6D 79.054 148 27 4 2368 2515 466775998 466776141 6.720000e-17 99.0
19 TraesCS5D01G236700 chr6D 77.236 123 27 1 2335 2456 429826917 429827039 1.470000e-08 71.3
20 TraesCS5D01G236700 chr7A 80.870 115 20 2 2355 2468 131938556 131938669 4.050000e-14 89.8
21 TraesCS5D01G236700 chr7A 94.872 39 1 1 340 378 405069402 405069439 3.170000e-05 60.2
22 TraesCS5D01G236700 chr7D 100.000 31 0 0 340 370 367260014 367260044 1.140000e-04 58.4
23 TraesCS5D01G236700 chr2B 100.000 31 0 0 2877 2907 335235340 335235310 1.140000e-04 58.4
24 TraesCS5D01G236700 chr3D 94.286 35 1 1 344 378 612726178 612726145 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G236700 chr5D 345081965 345084912 2947 False 5445.000000 5445 100.0000 1 2948 1 chr5D.!!$F1 2947
1 TraesCS5D01G236700 chr5B 406526532 406528852 2320 True 1638.500000 2604 92.6855 599 2948 2 chr5B.!!$R2 2349
2 TraesCS5D01G236700 chr5A 446635916 446638282 2366 True 962.333333 2305 92.1350 570 2550 3 chr5A.!!$R1 1980

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
504 505 0.030638 TTTGACAAGGCAAAGCGAGC 59.969 50.0 0.0 0.0 33.16 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2370 2785 0.037232 GTTCGTTCAGTGGGAGGAGG 60.037 60.0 0.0 0.0 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.225272 TTGTATGCACCACCTCACG 57.775 52.632 0.00 0.00 0.00 4.35
19 20 0.394938 TTGTATGCACCACCTCACGT 59.605 50.000 0.00 0.00 0.00 4.49
20 21 0.037697 TGTATGCACCACCTCACGTC 60.038 55.000 0.00 0.00 0.00 4.34
21 22 0.037697 GTATGCACCACCTCACGTCA 60.038 55.000 0.00 0.00 0.00 4.35
22 23 0.037697 TATGCACCACCTCACGTCAC 60.038 55.000 0.00 0.00 0.00 3.67
23 24 2.038814 ATGCACCACCTCACGTCACA 62.039 55.000 0.00 0.00 0.00 3.58
24 25 1.301716 GCACCACCTCACGTCACAT 60.302 57.895 0.00 0.00 0.00 3.21
25 26 0.884704 GCACCACCTCACGTCACATT 60.885 55.000 0.00 0.00 0.00 2.71
26 27 1.593196 CACCACCTCACGTCACATTT 58.407 50.000 0.00 0.00 0.00 2.32
27 28 1.264020 CACCACCTCACGTCACATTTG 59.736 52.381 0.00 0.00 0.00 2.32
28 29 0.238289 CCACCTCACGTCACATTTGC 59.762 55.000 0.00 0.00 0.00 3.68
29 30 0.943673 CACCTCACGTCACATTTGCA 59.056 50.000 0.00 0.00 0.00 4.08
30 31 1.333308 CACCTCACGTCACATTTGCAA 59.667 47.619 0.00 0.00 0.00 4.08
31 32 2.030893 CACCTCACGTCACATTTGCAAT 60.031 45.455 0.00 0.00 0.00 3.56
32 33 2.030893 ACCTCACGTCACATTTGCAATG 60.031 45.455 0.00 3.61 0.00 2.82
33 34 2.226200 CCTCACGTCACATTTGCAATGA 59.774 45.455 0.00 0.00 0.00 2.57
34 35 3.304592 CCTCACGTCACATTTGCAATGAA 60.305 43.478 0.00 0.00 0.00 2.57
35 36 4.478699 CTCACGTCACATTTGCAATGAAT 58.521 39.130 0.00 0.00 0.00 2.57
36 37 5.391843 CCTCACGTCACATTTGCAATGAATA 60.392 40.000 0.00 0.00 0.00 1.75
37 38 6.193514 TCACGTCACATTTGCAATGAATAT 57.806 33.333 0.00 0.00 0.00 1.28
38 39 7.313951 TCACGTCACATTTGCAATGAATATA 57.686 32.000 0.00 0.00 0.00 0.86
39 40 7.929159 TCACGTCACATTTGCAATGAATATAT 58.071 30.769 0.00 0.00 0.00 0.86
40 41 8.404765 TCACGTCACATTTGCAATGAATATATT 58.595 29.630 0.00 0.00 0.00 1.28
41 42 8.473796 CACGTCACATTTGCAATGAATATATTG 58.526 33.333 1.78 0.00 40.25 1.90
42 43 8.190122 ACGTCACATTTGCAATGAATATATTGT 58.810 29.630 1.78 0.00 39.62 2.71
43 44 8.473796 CGTCACATTTGCAATGAATATATTGTG 58.526 33.333 1.78 1.91 39.62 3.33
44 45 9.304731 GTCACATTTGCAATGAATATATTGTGT 57.695 29.630 1.78 0.00 39.62 3.72
45 46 9.303537 TCACATTTGCAATGAATATATTGTGTG 57.696 29.630 1.78 10.56 39.79 3.82
46 47 9.303537 CACATTTGCAATGAATATATTGTGTGA 57.696 29.630 1.78 0.00 40.28 3.58
47 48 9.524106 ACATTTGCAATGAATATATTGTGTGAG 57.476 29.630 1.78 0.00 39.62 3.51
48 49 7.990541 TTTGCAATGAATATATTGTGTGAGC 57.009 32.000 1.78 0.67 39.62 4.26
49 50 6.947644 TGCAATGAATATATTGTGTGAGCT 57.052 33.333 1.78 0.00 39.62 4.09
50 51 8.449251 TTGCAATGAATATATTGTGTGAGCTA 57.551 30.769 1.78 0.00 39.62 3.32
51 52 8.625786 TGCAATGAATATATTGTGTGAGCTAT 57.374 30.769 1.78 0.00 39.62 2.97
52 53 9.723601 TGCAATGAATATATTGTGTGAGCTATA 57.276 29.630 1.78 0.00 39.62 1.31
56 57 8.763049 TGAATATATTGTGTGAGCTATAGTGC 57.237 34.615 1.78 0.00 0.00 4.40
57 58 8.367156 TGAATATATTGTGTGAGCTATAGTGCA 58.633 33.333 1.78 0.00 34.99 4.57
58 59 9.208022 GAATATATTGTGTGAGCTATAGTGCAA 57.792 33.333 1.78 0.00 34.99 4.08
59 60 9.559732 AATATATTGTGTGAGCTATAGTGCAAA 57.440 29.630 0.84 0.00 34.99 3.68
60 61 7.864108 ATATTGTGTGAGCTATAGTGCAAAA 57.136 32.000 0.84 0.00 34.99 2.44
61 62 5.356882 TTGTGTGAGCTATAGTGCAAAAC 57.643 39.130 0.84 3.65 34.99 2.43
62 63 3.751175 TGTGTGAGCTATAGTGCAAAACC 59.249 43.478 0.84 0.00 34.99 3.27
63 64 3.127030 GTGTGAGCTATAGTGCAAAACCC 59.873 47.826 0.84 0.00 34.99 4.11
64 65 3.244735 TGTGAGCTATAGTGCAAAACCCA 60.245 43.478 0.84 0.00 34.99 4.51
65 66 3.756434 GTGAGCTATAGTGCAAAACCCAA 59.244 43.478 0.84 0.00 34.99 4.12
66 67 4.217550 GTGAGCTATAGTGCAAAACCCAAA 59.782 41.667 0.84 0.00 34.99 3.28
67 68 5.016173 TGAGCTATAGTGCAAAACCCAAAT 58.984 37.500 0.84 0.00 34.99 2.32
68 69 5.125417 TGAGCTATAGTGCAAAACCCAAATC 59.875 40.000 0.84 0.00 34.99 2.17
69 70 5.016173 AGCTATAGTGCAAAACCCAAATCA 58.984 37.500 0.84 0.00 34.99 2.57
70 71 5.480073 AGCTATAGTGCAAAACCCAAATCAA 59.520 36.000 0.84 0.00 34.99 2.57
71 72 5.807011 GCTATAGTGCAAAACCCAAATCAAG 59.193 40.000 0.84 0.00 0.00 3.02
72 73 5.806654 ATAGTGCAAAACCCAAATCAAGT 57.193 34.783 0.00 0.00 0.00 3.16
73 74 6.909550 ATAGTGCAAAACCCAAATCAAGTA 57.090 33.333 0.00 0.00 0.00 2.24
74 75 5.200368 AGTGCAAAACCCAAATCAAGTAG 57.800 39.130 0.00 0.00 0.00 2.57
75 76 3.740832 GTGCAAAACCCAAATCAAGTAGC 59.259 43.478 0.00 0.00 0.00 3.58
76 77 3.386078 TGCAAAACCCAAATCAAGTAGCA 59.614 39.130 0.00 0.00 0.00 3.49
77 78 3.989817 GCAAAACCCAAATCAAGTAGCAG 59.010 43.478 0.00 0.00 0.00 4.24
78 79 4.559153 CAAAACCCAAATCAAGTAGCAGG 58.441 43.478 0.00 0.00 0.00 4.85
79 80 2.514458 ACCCAAATCAAGTAGCAGGG 57.486 50.000 0.00 0.00 40.66 4.45
80 81 1.005924 ACCCAAATCAAGTAGCAGGGG 59.994 52.381 0.00 0.00 39.15 4.79
81 82 1.686115 CCCAAATCAAGTAGCAGGGGG 60.686 57.143 0.00 0.00 0.00 5.40
82 83 1.284785 CCAAATCAAGTAGCAGGGGGA 59.715 52.381 0.00 0.00 0.00 4.81
83 84 2.291540 CCAAATCAAGTAGCAGGGGGAA 60.292 50.000 0.00 0.00 0.00 3.97
84 85 3.019564 CAAATCAAGTAGCAGGGGGAAG 58.980 50.000 0.00 0.00 0.00 3.46
85 86 1.216990 ATCAAGTAGCAGGGGGAAGG 58.783 55.000 0.00 0.00 0.00 3.46
86 87 1.077429 CAAGTAGCAGGGGGAAGGC 60.077 63.158 0.00 0.00 0.00 4.35
87 88 1.541368 AAGTAGCAGGGGGAAGGCA 60.541 57.895 0.00 0.00 0.00 4.75
88 89 1.853250 AAGTAGCAGGGGGAAGGCAC 61.853 60.000 0.00 0.00 0.00 5.01
89 90 2.204074 TAGCAGGGGGAAGGCACA 60.204 61.111 0.00 0.00 0.00 4.57
90 91 1.850289 TAGCAGGGGGAAGGCACAA 60.850 57.895 0.00 0.00 0.00 3.33
91 92 1.431195 TAGCAGGGGGAAGGCACAAA 61.431 55.000 0.00 0.00 0.00 2.83
92 93 2.278330 GCAGGGGGAAGGCACAAAG 61.278 63.158 0.00 0.00 0.00 2.77
93 94 1.460255 CAGGGGGAAGGCACAAAGA 59.540 57.895 0.00 0.00 0.00 2.52
94 95 0.178964 CAGGGGGAAGGCACAAAGAA 60.179 55.000 0.00 0.00 0.00 2.52
95 96 0.786435 AGGGGGAAGGCACAAAGAAT 59.214 50.000 0.00 0.00 0.00 2.40
96 97 0.897621 GGGGGAAGGCACAAAGAATG 59.102 55.000 0.00 0.00 0.00 2.67
97 98 1.632589 GGGGAAGGCACAAAGAATGT 58.367 50.000 0.00 0.00 45.34 2.71
98 99 1.970640 GGGGAAGGCACAAAGAATGTT 59.029 47.619 0.00 0.00 41.46 2.71
99 100 2.029020 GGGGAAGGCACAAAGAATGTTC 60.029 50.000 0.00 0.00 41.46 3.18
100 101 2.029020 GGGAAGGCACAAAGAATGTTCC 60.029 50.000 0.00 0.00 44.75 3.62
104 105 2.519013 GGCACAAAGAATGTTCCTCCT 58.481 47.619 0.00 0.00 41.58 3.69
105 106 2.893489 GGCACAAAGAATGTTCCTCCTT 59.107 45.455 0.00 0.00 41.58 3.36
106 107 4.079253 GGCACAAAGAATGTTCCTCCTTA 58.921 43.478 0.00 0.00 41.58 2.69
107 108 4.706962 GGCACAAAGAATGTTCCTCCTTAT 59.293 41.667 0.00 0.00 41.58 1.73
108 109 5.163612 GGCACAAAGAATGTTCCTCCTTATC 60.164 44.000 0.00 0.00 41.58 1.75
109 110 5.649831 GCACAAAGAATGTTCCTCCTTATCT 59.350 40.000 0.00 0.00 41.46 1.98
110 111 6.183360 GCACAAAGAATGTTCCTCCTTATCTC 60.183 42.308 0.00 0.00 41.46 2.75
111 112 6.317391 CACAAAGAATGTTCCTCCTTATCTCC 59.683 42.308 0.00 0.00 41.46 3.71
112 113 6.012508 ACAAAGAATGTTCCTCCTTATCTCCA 60.013 38.462 0.00 0.00 40.06 3.86
113 114 5.885449 AGAATGTTCCTCCTTATCTCCAG 57.115 43.478 0.00 0.00 0.00 3.86
114 115 5.533112 AGAATGTTCCTCCTTATCTCCAGA 58.467 41.667 0.00 0.00 0.00 3.86
115 116 5.966935 AGAATGTTCCTCCTTATCTCCAGAA 59.033 40.000 0.00 0.00 0.00 3.02
116 117 6.445139 AGAATGTTCCTCCTTATCTCCAGAAA 59.555 38.462 0.00 0.00 0.00 2.52
117 118 5.683876 TGTTCCTCCTTATCTCCAGAAAG 57.316 43.478 0.00 0.00 0.00 2.62
118 119 4.471386 TGTTCCTCCTTATCTCCAGAAAGG 59.529 45.833 9.55 9.55 41.00 3.11
119 120 3.041946 TCCTCCTTATCTCCAGAAAGGC 58.958 50.000 10.43 0.00 39.74 4.35
120 121 2.774234 CCTCCTTATCTCCAGAAAGGCA 59.226 50.000 10.43 3.38 39.74 4.75
121 122 3.200825 CCTCCTTATCTCCAGAAAGGCAA 59.799 47.826 10.43 0.00 39.74 4.52
122 123 4.324563 CCTCCTTATCTCCAGAAAGGCAAA 60.325 45.833 10.43 0.00 39.74 3.68
123 124 5.255397 TCCTTATCTCCAGAAAGGCAAAA 57.745 39.130 10.43 0.00 39.74 2.44
124 125 5.256474 TCCTTATCTCCAGAAAGGCAAAAG 58.744 41.667 10.43 0.00 39.74 2.27
125 126 5.014123 TCCTTATCTCCAGAAAGGCAAAAGA 59.986 40.000 10.43 0.00 39.74 2.52
126 127 5.711976 CCTTATCTCCAGAAAGGCAAAAGAA 59.288 40.000 0.00 0.00 33.84 2.52
127 128 6.209391 CCTTATCTCCAGAAAGGCAAAAGAAA 59.791 38.462 0.00 0.00 33.84 2.52
128 129 7.255942 CCTTATCTCCAGAAAGGCAAAAGAAAA 60.256 37.037 0.00 0.00 33.84 2.29
129 130 5.930837 TCTCCAGAAAGGCAAAAGAAAAA 57.069 34.783 0.00 0.00 37.29 1.94
130 131 6.484364 TCTCCAGAAAGGCAAAAGAAAAAT 57.516 33.333 0.00 0.00 37.29 1.82
131 132 6.888105 TCTCCAGAAAGGCAAAAGAAAAATT 58.112 32.000 0.00 0.00 37.29 1.82
132 133 6.762661 TCTCCAGAAAGGCAAAAGAAAAATTG 59.237 34.615 0.00 0.00 37.29 2.32
133 134 6.648192 TCCAGAAAGGCAAAAGAAAAATTGA 58.352 32.000 0.00 0.00 37.29 2.57
134 135 6.762661 TCCAGAAAGGCAAAAGAAAAATTGAG 59.237 34.615 0.00 0.00 37.29 3.02
135 136 6.424683 CAGAAAGGCAAAAGAAAAATTGAGC 58.575 36.000 0.00 0.00 0.00 4.26
136 137 6.037391 CAGAAAGGCAAAAGAAAAATTGAGCA 59.963 34.615 0.00 0.00 0.00 4.26
137 138 5.739752 AAGGCAAAAGAAAAATTGAGCAC 57.260 34.783 0.00 0.00 0.00 4.40
138 139 5.027293 AGGCAAAAGAAAAATTGAGCACT 57.973 34.783 0.00 0.00 0.00 4.40
139 140 6.160576 AGGCAAAAGAAAAATTGAGCACTA 57.839 33.333 0.00 0.00 0.00 2.74
140 141 5.985530 AGGCAAAAGAAAAATTGAGCACTAC 59.014 36.000 0.00 0.00 0.00 2.73
141 142 5.752955 GGCAAAAGAAAAATTGAGCACTACA 59.247 36.000 0.00 0.00 0.00 2.74
142 143 6.257630 GGCAAAAGAAAAATTGAGCACTACAA 59.742 34.615 0.00 0.00 0.00 2.41
143 144 7.041848 GGCAAAAGAAAAATTGAGCACTACAAT 60.042 33.333 0.00 0.00 39.25 2.71
144 145 7.795272 GCAAAAGAAAAATTGAGCACTACAATG 59.205 33.333 0.00 0.00 37.89 2.82
145 146 9.033481 CAAAAGAAAAATTGAGCACTACAATGA 57.967 29.630 0.00 0.00 37.89 2.57
146 147 9.598517 AAAAGAAAAATTGAGCACTACAATGAA 57.401 25.926 0.00 0.00 37.89 2.57
147 148 9.768662 AAAGAAAAATTGAGCACTACAATGAAT 57.231 25.926 0.00 0.00 37.89 2.57
148 149 8.752766 AGAAAAATTGAGCACTACAATGAATG 57.247 30.769 0.00 0.00 37.89 2.67
149 150 8.579006 AGAAAAATTGAGCACTACAATGAATGA 58.421 29.630 0.00 0.00 37.89 2.57
150 151 8.752766 AAAAATTGAGCACTACAATGAATGAG 57.247 30.769 0.00 0.00 37.89 2.90
151 152 4.952262 TTGAGCACTACAATGAATGAGC 57.048 40.909 0.00 0.00 0.00 4.26
152 153 3.941573 TGAGCACTACAATGAATGAGCA 58.058 40.909 0.00 0.00 0.00 4.26
153 154 4.325972 TGAGCACTACAATGAATGAGCAA 58.674 39.130 0.00 0.00 0.00 3.91
154 155 4.761227 TGAGCACTACAATGAATGAGCAAA 59.239 37.500 0.00 0.00 0.00 3.68
155 156 5.241285 TGAGCACTACAATGAATGAGCAAAA 59.759 36.000 0.00 0.00 0.00 2.44
156 157 6.071784 TGAGCACTACAATGAATGAGCAAAAT 60.072 34.615 0.00 0.00 0.00 1.82
157 158 7.121020 TGAGCACTACAATGAATGAGCAAAATA 59.879 33.333 0.00 0.00 0.00 1.40
158 159 7.829725 AGCACTACAATGAATGAGCAAAATAA 58.170 30.769 0.00 0.00 0.00 1.40
159 160 8.472413 AGCACTACAATGAATGAGCAAAATAAT 58.528 29.630 0.00 0.00 0.00 1.28
160 161 9.090692 GCACTACAATGAATGAGCAAAATAATT 57.909 29.630 0.00 0.00 0.00 1.40
164 165 8.652810 ACAATGAATGAGCAAAATAATTAGCC 57.347 30.769 0.00 0.00 0.00 3.93
165 166 8.259411 ACAATGAATGAGCAAAATAATTAGCCA 58.741 29.630 0.00 0.00 0.00 4.75
166 167 9.268268 CAATGAATGAGCAAAATAATTAGCCAT 57.732 29.630 0.00 0.00 0.00 4.40
168 169 9.918630 ATGAATGAGCAAAATAATTAGCCATAC 57.081 29.630 0.00 0.00 0.00 2.39
169 170 9.135189 TGAATGAGCAAAATAATTAGCCATACT 57.865 29.630 0.00 0.00 0.00 2.12
172 173 8.621532 TGAGCAAAATAATTAGCCATACTAGG 57.378 34.615 0.00 0.00 30.79 3.02
173 174 8.436778 TGAGCAAAATAATTAGCCATACTAGGA 58.563 33.333 0.00 0.00 30.79 2.94
174 175 9.454859 GAGCAAAATAATTAGCCATACTAGGAT 57.545 33.333 0.00 0.00 30.79 3.24
181 182 7.739995 AATTAGCCATACTAGGATATGCAGA 57.260 36.000 10.42 0.00 32.12 4.26
182 183 6.531503 TTAGCCATACTAGGATATGCAGAC 57.468 41.667 10.42 0.00 32.12 3.51
183 184 4.420206 AGCCATACTAGGATATGCAGACA 58.580 43.478 10.42 0.00 32.12 3.41
184 185 4.221703 AGCCATACTAGGATATGCAGACAC 59.778 45.833 10.42 0.00 32.12 3.67
185 186 4.621747 GCCATACTAGGATATGCAGACACC 60.622 50.000 4.19 0.00 32.12 4.16
186 187 4.380973 CCATACTAGGATATGCAGACACCG 60.381 50.000 0.00 0.00 32.12 4.94
187 188 2.945456 ACTAGGATATGCAGACACCGA 58.055 47.619 0.00 0.00 0.00 4.69
188 189 3.501349 ACTAGGATATGCAGACACCGAT 58.499 45.455 0.00 0.00 0.00 4.18
189 190 3.508012 ACTAGGATATGCAGACACCGATC 59.492 47.826 0.00 0.00 0.00 3.69
190 191 2.319844 AGGATATGCAGACACCGATCA 58.680 47.619 0.00 0.00 0.00 2.92
191 192 2.036475 AGGATATGCAGACACCGATCAC 59.964 50.000 0.00 0.00 0.00 3.06
192 193 2.036475 GGATATGCAGACACCGATCACT 59.964 50.000 0.00 0.00 0.00 3.41
193 194 3.493350 GGATATGCAGACACCGATCACTT 60.493 47.826 0.00 0.00 0.00 3.16
194 195 1.730501 ATGCAGACACCGATCACTTG 58.269 50.000 0.00 0.00 0.00 3.16
195 196 0.950555 TGCAGACACCGATCACTTGC 60.951 55.000 0.00 0.00 0.00 4.01
196 197 0.950555 GCAGACACCGATCACTTGCA 60.951 55.000 0.00 0.00 0.00 4.08
197 198 1.730501 CAGACACCGATCACTTGCAT 58.269 50.000 0.00 0.00 0.00 3.96
198 199 1.395954 CAGACACCGATCACTTGCATG 59.604 52.381 0.00 0.00 0.00 4.06
199 200 1.276138 AGACACCGATCACTTGCATGA 59.724 47.619 6.60 0.00 0.00 3.07
200 201 1.394917 GACACCGATCACTTGCATGAC 59.605 52.381 6.60 0.00 0.00 3.06
201 202 1.002430 ACACCGATCACTTGCATGACT 59.998 47.619 6.60 0.00 0.00 3.41
202 203 2.079158 CACCGATCACTTGCATGACTT 58.921 47.619 6.60 0.00 0.00 3.01
203 204 3.261580 CACCGATCACTTGCATGACTTA 58.738 45.455 6.60 0.00 0.00 2.24
204 205 3.873361 CACCGATCACTTGCATGACTTAT 59.127 43.478 6.60 0.00 0.00 1.73
205 206 5.049828 CACCGATCACTTGCATGACTTATA 58.950 41.667 6.60 0.00 0.00 0.98
206 207 5.698089 CACCGATCACTTGCATGACTTATAT 59.302 40.000 6.60 0.00 0.00 0.86
207 208 6.868339 CACCGATCACTTGCATGACTTATATA 59.132 38.462 6.60 0.00 0.00 0.86
208 209 7.384932 CACCGATCACTTGCATGACTTATATAA 59.615 37.037 6.60 0.00 0.00 0.98
209 210 8.097038 ACCGATCACTTGCATGACTTATATAAT 58.903 33.333 6.60 0.00 0.00 1.28
210 211 8.939929 CCGATCACTTGCATGACTTATATAATT 58.060 33.333 6.60 0.00 0.00 1.40
235 236 7.816300 AGAGAAGTTTATCCCTCTTAAAGGT 57.184 36.000 0.00 0.00 44.56 3.50
236 237 7.625469 AGAGAAGTTTATCCCTCTTAAAGGTG 58.375 38.462 0.00 0.00 44.56 4.00
237 238 7.237887 AGAGAAGTTTATCCCTCTTAAAGGTGT 59.762 37.037 0.00 0.00 44.56 4.16
238 239 7.756614 AGAAGTTTATCCCTCTTAAAGGTGTT 58.243 34.615 3.88 0.00 44.56 3.32
239 240 7.665974 AGAAGTTTATCCCTCTTAAAGGTGTTG 59.334 37.037 3.88 0.00 44.56 3.33
240 241 5.710567 AGTTTATCCCTCTTAAAGGTGTTGC 59.289 40.000 3.88 0.00 44.56 4.17
241 242 5.514500 TTATCCCTCTTAAAGGTGTTGCT 57.486 39.130 0.00 0.00 44.56 3.91
242 243 3.140325 TCCCTCTTAAAGGTGTTGCTG 57.860 47.619 0.00 0.00 44.56 4.41
243 244 1.541588 CCCTCTTAAAGGTGTTGCTGC 59.458 52.381 0.00 0.00 44.56 5.25
244 245 1.197721 CCTCTTAAAGGTGTTGCTGCG 59.802 52.381 0.00 0.00 40.67 5.18
245 246 1.197721 CTCTTAAAGGTGTTGCTGCGG 59.802 52.381 0.00 0.00 0.00 5.69
246 247 1.202710 TCTTAAAGGTGTTGCTGCGGA 60.203 47.619 0.00 0.00 0.00 5.54
247 248 1.606668 CTTAAAGGTGTTGCTGCGGAA 59.393 47.619 0.00 0.00 0.00 4.30
248 249 1.234821 TAAAGGTGTTGCTGCGGAAG 58.765 50.000 0.00 0.00 0.00 3.46
249 250 0.465460 AAAGGTGTTGCTGCGGAAGA 60.465 50.000 0.00 0.00 0.00 2.87
250 251 0.465460 AAGGTGTTGCTGCGGAAGAA 60.465 50.000 0.00 0.00 0.00 2.52
251 252 0.886490 AGGTGTTGCTGCGGAAGAAG 60.886 55.000 0.00 0.00 40.88 2.85
252 253 1.166531 GGTGTTGCTGCGGAAGAAGT 61.167 55.000 0.00 0.00 39.71 3.01
253 254 0.663153 GTGTTGCTGCGGAAGAAGTT 59.337 50.000 0.00 0.00 39.71 2.66
254 255 0.662619 TGTTGCTGCGGAAGAAGTTG 59.337 50.000 0.00 0.00 39.71 3.16
255 256 0.663153 GTTGCTGCGGAAGAAGTTGT 59.337 50.000 0.00 0.00 39.71 3.32
256 257 0.944386 TTGCTGCGGAAGAAGTTGTC 59.056 50.000 0.00 0.00 39.71 3.18
257 258 0.106708 TGCTGCGGAAGAAGTTGTCT 59.893 50.000 0.00 0.00 39.71 3.41
270 271 6.919775 AGAAGTTGTCTTAGTCATAGGTGT 57.080 37.500 0.00 0.00 29.66 4.16
271 272 7.304497 AGAAGTTGTCTTAGTCATAGGTGTT 57.696 36.000 0.00 0.00 29.66 3.32
272 273 7.379750 AGAAGTTGTCTTAGTCATAGGTGTTC 58.620 38.462 0.00 0.00 29.66 3.18
273 274 6.919775 AGTTGTCTTAGTCATAGGTGTTCT 57.080 37.500 0.00 0.00 0.00 3.01
274 275 6.926313 AGTTGTCTTAGTCATAGGTGTTCTC 58.074 40.000 0.00 0.00 0.00 2.87
275 276 6.722129 AGTTGTCTTAGTCATAGGTGTTCTCT 59.278 38.462 0.00 0.00 0.00 3.10
276 277 7.233757 AGTTGTCTTAGTCATAGGTGTTCTCTT 59.766 37.037 0.00 0.00 0.00 2.85
277 278 7.540474 TGTCTTAGTCATAGGTGTTCTCTTT 57.460 36.000 0.00 0.00 0.00 2.52
278 279 7.963532 TGTCTTAGTCATAGGTGTTCTCTTTT 58.036 34.615 0.00 0.00 0.00 2.27
279 280 8.429641 TGTCTTAGTCATAGGTGTTCTCTTTTT 58.570 33.333 0.00 0.00 0.00 1.94
280 281 8.927721 GTCTTAGTCATAGGTGTTCTCTTTTTC 58.072 37.037 0.00 0.00 0.00 2.29
281 282 8.647796 TCTTAGTCATAGGTGTTCTCTTTTTCA 58.352 33.333 0.00 0.00 0.00 2.69
282 283 9.442047 CTTAGTCATAGGTGTTCTCTTTTTCAT 57.558 33.333 0.00 0.00 0.00 2.57
285 286 9.606631 AGTCATAGGTGTTCTCTTTTTCATATC 57.393 33.333 0.00 0.00 0.00 1.63
286 287 9.606631 GTCATAGGTGTTCTCTTTTTCATATCT 57.393 33.333 0.00 0.00 0.00 1.98
301 302 9.651913 TTTTTCATATCTTCTAACATTTTGGCC 57.348 29.630 0.00 0.00 0.00 5.36
302 303 6.959639 TCATATCTTCTAACATTTTGGCCC 57.040 37.500 0.00 0.00 0.00 5.80
303 304 6.672593 TCATATCTTCTAACATTTTGGCCCT 58.327 36.000 0.00 0.00 0.00 5.19
304 305 6.547141 TCATATCTTCTAACATTTTGGCCCTG 59.453 38.462 0.00 0.00 0.00 4.45
305 306 3.430453 TCTTCTAACATTTTGGCCCTGG 58.570 45.455 0.00 0.00 0.00 4.45
306 307 2.990740 TCTAACATTTTGGCCCTGGT 57.009 45.000 0.00 0.00 0.00 4.00
307 308 3.252554 TCTAACATTTTGGCCCTGGTT 57.747 42.857 0.00 0.11 0.00 3.67
308 309 4.390129 TCTAACATTTTGGCCCTGGTTA 57.610 40.909 0.00 1.41 0.00 2.85
309 310 4.340617 TCTAACATTTTGGCCCTGGTTAG 58.659 43.478 17.13 17.13 39.16 2.34
310 311 1.266178 ACATTTTGGCCCTGGTTAGC 58.734 50.000 0.00 0.00 0.00 3.09
311 312 1.203174 ACATTTTGGCCCTGGTTAGCT 60.203 47.619 0.00 0.00 0.00 3.32
312 313 1.901833 CATTTTGGCCCTGGTTAGCTT 59.098 47.619 0.00 0.00 0.00 3.74
313 314 2.095604 TTTTGGCCCTGGTTAGCTTT 57.904 45.000 0.00 0.00 0.00 3.51
314 315 1.337118 TTTGGCCCTGGTTAGCTTTG 58.663 50.000 0.00 0.00 0.00 2.77
315 316 0.187361 TTGGCCCTGGTTAGCTTTGT 59.813 50.000 0.00 0.00 0.00 2.83
316 317 0.187361 TGGCCCTGGTTAGCTTTGTT 59.813 50.000 0.00 0.00 0.00 2.83
317 318 1.425831 TGGCCCTGGTTAGCTTTGTTA 59.574 47.619 0.00 0.00 0.00 2.41
318 319 2.042433 TGGCCCTGGTTAGCTTTGTTAT 59.958 45.455 0.00 0.00 0.00 1.89
319 320 2.427095 GGCCCTGGTTAGCTTTGTTATG 59.573 50.000 0.00 0.00 0.00 1.90
320 321 3.089284 GCCCTGGTTAGCTTTGTTATGT 58.911 45.455 0.00 0.00 0.00 2.29
321 322 4.266714 GCCCTGGTTAGCTTTGTTATGTA 58.733 43.478 0.00 0.00 0.00 2.29
322 323 4.095932 GCCCTGGTTAGCTTTGTTATGTAC 59.904 45.833 0.00 0.00 0.00 2.90
323 324 5.497474 CCCTGGTTAGCTTTGTTATGTACT 58.503 41.667 0.00 0.00 0.00 2.73
324 325 5.944007 CCCTGGTTAGCTTTGTTATGTACTT 59.056 40.000 0.00 0.00 0.00 2.24
325 326 6.433093 CCCTGGTTAGCTTTGTTATGTACTTT 59.567 38.462 0.00 0.00 0.00 2.66
326 327 7.305474 CCTGGTTAGCTTTGTTATGTACTTTG 58.695 38.462 0.00 0.00 0.00 2.77
327 328 6.674066 TGGTTAGCTTTGTTATGTACTTTGC 58.326 36.000 0.00 0.00 0.00 3.68
328 329 6.488683 TGGTTAGCTTTGTTATGTACTTTGCT 59.511 34.615 0.00 0.00 33.33 3.91
329 330 7.013846 TGGTTAGCTTTGTTATGTACTTTGCTT 59.986 33.333 0.00 0.00 31.98 3.91
330 331 8.508875 GGTTAGCTTTGTTATGTACTTTGCTTA 58.491 33.333 0.00 0.00 31.98 3.09
331 332 9.887406 GTTAGCTTTGTTATGTACTTTGCTTAA 57.113 29.630 0.00 0.00 31.98 1.85
358 359 8.518430 AGTATTAATAATGGTTGTGTGCATCA 57.482 30.769 0.00 0.00 0.00 3.07
359 360 9.135189 AGTATTAATAATGGTTGTGTGCATCAT 57.865 29.630 0.00 0.00 0.00 2.45
363 364 9.747293 TTAATAATGGTTGTGTGCATCATAATG 57.253 29.630 0.00 0.00 35.87 1.90
364 365 5.918426 AATGGTTGTGTGCATCATAATGA 57.082 34.783 0.00 0.00 34.61 2.57
365 366 6.474140 AATGGTTGTGTGCATCATAATGAT 57.526 33.333 0.00 0.00 37.65 2.45
377 378 6.183309 CATCATAATGATGCAGATGTCTGG 57.817 41.667 11.66 0.00 46.37 3.86
378 379 5.938125 CATCATAATGATGCAGATGTCTGGA 59.062 40.000 11.66 9.29 46.37 3.86
386 387 3.084039 TGCAGATGTCTGGATTTCAACC 58.916 45.455 11.66 0.00 43.94 3.77
387 388 3.245016 TGCAGATGTCTGGATTTCAACCT 60.245 43.478 11.66 0.00 43.94 3.50
388 389 3.376546 GCAGATGTCTGGATTTCAACCTC 59.623 47.826 11.66 0.00 43.94 3.85
389 390 4.841422 CAGATGTCTGGATTTCAACCTCT 58.159 43.478 2.03 0.00 40.20 3.69
390 391 5.251764 CAGATGTCTGGATTTCAACCTCTT 58.748 41.667 2.03 0.00 40.20 2.85
391 392 5.709164 CAGATGTCTGGATTTCAACCTCTTT 59.291 40.000 2.03 0.00 40.20 2.52
392 393 6.208204 CAGATGTCTGGATTTCAACCTCTTTT 59.792 38.462 2.03 0.00 40.20 2.27
393 394 6.779539 AGATGTCTGGATTTCAACCTCTTTTT 59.220 34.615 0.00 0.00 0.00 1.94
394 395 6.147864 TGTCTGGATTTCAACCTCTTTTTG 57.852 37.500 0.00 0.00 0.00 2.44
395 396 5.890985 TGTCTGGATTTCAACCTCTTTTTGA 59.109 36.000 0.00 0.00 0.00 2.69
396 397 6.379703 TGTCTGGATTTCAACCTCTTTTTGAA 59.620 34.615 0.00 0.00 40.42 2.69
403 404 6.530019 TTCAACCTCTTTTTGAAAGAAGCT 57.470 33.333 4.84 0.00 39.47 3.74
404 405 5.894807 TCAACCTCTTTTTGAAAGAAGCTG 58.105 37.500 4.84 1.58 29.89 4.24
405 406 5.652014 TCAACCTCTTTTTGAAAGAAGCTGA 59.348 36.000 4.84 3.61 29.89 4.26
406 407 6.152661 TCAACCTCTTTTTGAAAGAAGCTGAA 59.847 34.615 4.84 0.00 29.89 3.02
407 408 6.530019 ACCTCTTTTTGAAAGAAGCTGAAA 57.470 33.333 4.84 0.00 0.00 2.69
408 409 6.333416 ACCTCTTTTTGAAAGAAGCTGAAAC 58.667 36.000 4.84 0.00 0.00 2.78
409 410 5.456822 CCTCTTTTTGAAAGAAGCTGAAACG 59.543 40.000 4.84 0.00 0.00 3.60
410 411 4.798387 TCTTTTTGAAAGAAGCTGAAACGC 59.202 37.500 0.88 0.00 0.00 4.84
411 412 2.383298 TTGAAAGAAGCTGAAACGCG 57.617 45.000 3.53 3.53 34.40 6.01
412 413 0.041312 TGAAAGAAGCTGAAACGCGC 60.041 50.000 5.73 0.00 34.40 6.86
413 414 0.041312 GAAAGAAGCTGAAACGCGCA 60.041 50.000 5.73 0.00 34.40 6.09
414 415 0.040958 AAAGAAGCTGAAACGCGCAG 60.041 50.000 5.73 6.98 36.47 5.18
415 416 1.845809 AAGAAGCTGAAACGCGCAGG 61.846 55.000 5.73 0.00 34.00 4.85
442 443 3.222603 GGGGGATACATGATTGTGTTCC 58.777 50.000 0.00 0.00 40.95 3.62
443 444 3.117512 GGGGGATACATGATTGTGTTCCT 60.118 47.826 0.00 0.00 41.32 3.36
444 445 4.137543 GGGGATACATGATTGTGTTCCTC 58.862 47.826 0.00 0.00 41.32 3.71
445 446 4.141390 GGGGATACATGATTGTGTTCCTCT 60.141 45.833 0.00 0.00 41.32 3.69
446 447 5.440610 GGGATACATGATTGTGTTCCTCTT 58.559 41.667 0.00 0.00 39.09 2.85
447 448 5.529060 GGGATACATGATTGTGTTCCTCTTC 59.471 44.000 0.00 0.00 39.09 2.87
448 449 6.352516 GGATACATGATTGTGTTCCTCTTCT 58.647 40.000 0.00 0.00 36.91 2.85
449 450 6.825721 GGATACATGATTGTGTTCCTCTTCTT 59.174 38.462 0.00 0.00 36.91 2.52
450 451 7.337942 GGATACATGATTGTGTTCCTCTTCTTT 59.662 37.037 0.00 0.00 36.91 2.52
451 452 6.323203 ACATGATTGTGTTCCTCTTCTTTG 57.677 37.500 0.00 0.00 33.85 2.77
452 453 5.829924 ACATGATTGTGTTCCTCTTCTTTGT 59.170 36.000 0.00 0.00 33.85 2.83
453 454 6.322201 ACATGATTGTGTTCCTCTTCTTTGTT 59.678 34.615 0.00 0.00 33.85 2.83
454 455 6.773976 TGATTGTGTTCCTCTTCTTTGTTT 57.226 33.333 0.00 0.00 0.00 2.83
455 456 6.563422 TGATTGTGTTCCTCTTCTTTGTTTG 58.437 36.000 0.00 0.00 0.00 2.93
456 457 6.376864 TGATTGTGTTCCTCTTCTTTGTTTGA 59.623 34.615 0.00 0.00 0.00 2.69
457 458 6.773976 TTGTGTTCCTCTTCTTTGTTTGAT 57.226 33.333 0.00 0.00 0.00 2.57
458 459 6.773976 TGTGTTCCTCTTCTTTGTTTGATT 57.226 33.333 0.00 0.00 0.00 2.57
459 460 7.169158 TGTGTTCCTCTTCTTTGTTTGATTT 57.831 32.000 0.00 0.00 0.00 2.17
460 461 7.610865 TGTGTTCCTCTTCTTTGTTTGATTTT 58.389 30.769 0.00 0.00 0.00 1.82
461 462 8.093927 TGTGTTCCTCTTCTTTGTTTGATTTTT 58.906 29.630 0.00 0.00 0.00 1.94
462 463 9.581099 GTGTTCCTCTTCTTTGTTTGATTTTTA 57.419 29.630 0.00 0.00 0.00 1.52
476 477 9.195411 TGTTTGATTTTTATGAAGTTCATGAGC 57.805 29.630 25.48 13.04 37.70 4.26
477 478 9.195411 GTTTGATTTTTATGAAGTTCATGAGCA 57.805 29.630 25.48 15.06 37.70 4.26
478 479 9.932207 TTTGATTTTTATGAAGTTCATGAGCAT 57.068 25.926 25.48 13.88 37.70 3.79
479 480 9.577110 TTGATTTTTATGAAGTTCATGAGCATC 57.423 29.630 25.48 20.10 37.70 3.91
494 495 4.935702 TGAGCATCAAGTTTTTGACAAGG 58.064 39.130 0.00 0.00 45.97 3.61
495 496 3.721035 AGCATCAAGTTTTTGACAAGGC 58.279 40.909 0.00 0.00 45.54 4.35
496 497 3.132646 AGCATCAAGTTTTTGACAAGGCA 59.867 39.130 0.00 0.00 45.54 4.75
497 498 3.870419 GCATCAAGTTTTTGACAAGGCAA 59.130 39.130 0.00 0.00 45.54 4.52
498 499 4.332268 GCATCAAGTTTTTGACAAGGCAAA 59.668 37.500 0.00 0.00 45.54 3.68
499 500 5.502869 GCATCAAGTTTTTGACAAGGCAAAG 60.503 40.000 0.89 0.00 45.54 2.77
500 501 3.932089 TCAAGTTTTTGACAAGGCAAAGC 59.068 39.130 0.89 0.00 38.37 3.51
501 502 2.539476 AGTTTTTGACAAGGCAAAGCG 58.461 42.857 0.89 0.00 38.80 4.68
502 503 2.165437 AGTTTTTGACAAGGCAAAGCGA 59.835 40.909 0.89 0.00 38.80 4.93
503 504 2.490328 TTTTGACAAGGCAAAGCGAG 57.510 45.000 0.89 0.00 38.80 5.03
504 505 0.030638 TTTGACAAGGCAAAGCGAGC 59.969 50.000 0.00 0.00 33.16 5.03
505 506 1.100463 TTGACAAGGCAAAGCGAGCA 61.100 50.000 0.00 0.00 0.00 4.26
506 507 1.208614 GACAAGGCAAAGCGAGCAG 59.791 57.895 0.00 0.00 0.00 4.24
507 508 1.510480 GACAAGGCAAAGCGAGCAGT 61.510 55.000 0.00 0.00 0.00 4.40
508 509 0.250295 ACAAGGCAAAGCGAGCAGTA 60.250 50.000 0.00 0.00 0.00 2.74
509 510 0.445436 CAAGGCAAAGCGAGCAGTAG 59.555 55.000 0.00 0.00 0.00 2.57
510 511 0.674895 AAGGCAAAGCGAGCAGTAGG 60.675 55.000 0.00 0.00 0.00 3.18
511 512 2.109126 GGCAAAGCGAGCAGTAGGG 61.109 63.158 0.00 0.00 0.00 3.53
512 513 2.109126 GCAAAGCGAGCAGTAGGGG 61.109 63.158 0.00 0.00 0.00 4.79
513 514 2.109126 CAAAGCGAGCAGTAGGGGC 61.109 63.158 0.00 0.00 0.00 5.80
514 515 3.330992 AAAGCGAGCAGTAGGGGCC 62.331 63.158 0.00 0.00 0.00 5.80
515 516 4.787280 AGCGAGCAGTAGGGGCCT 62.787 66.667 0.84 0.00 0.00 5.19
516 517 3.787001 GCGAGCAGTAGGGGCCTT 61.787 66.667 0.84 0.00 0.00 4.35
517 518 2.990479 CGAGCAGTAGGGGCCTTT 59.010 61.111 0.84 0.00 0.00 3.11
518 519 1.968050 GCGAGCAGTAGGGGCCTTTA 61.968 60.000 0.84 0.00 0.00 1.85
519 520 0.105039 CGAGCAGTAGGGGCCTTTAG 59.895 60.000 0.84 0.00 0.00 1.85
520 521 1.205055 GAGCAGTAGGGGCCTTTAGT 58.795 55.000 0.84 0.00 0.00 2.24
521 522 2.395619 GAGCAGTAGGGGCCTTTAGTA 58.604 52.381 0.84 0.00 0.00 1.82
522 523 2.973406 GAGCAGTAGGGGCCTTTAGTAT 59.027 50.000 0.84 0.00 0.00 2.12
523 524 2.706190 AGCAGTAGGGGCCTTTAGTATG 59.294 50.000 0.84 0.00 0.00 2.39
524 525 2.810767 GCAGTAGGGGCCTTTAGTATGC 60.811 54.545 0.84 1.20 0.00 3.14
525 526 2.055579 AGTAGGGGCCTTTAGTATGCC 58.944 52.381 0.84 0.00 44.59 4.40
526 527 2.055579 GTAGGGGCCTTTAGTATGCCT 58.944 52.381 0.84 0.00 44.71 4.75
527 528 2.507478 AGGGGCCTTTAGTATGCCTA 57.493 50.000 0.84 0.00 44.71 3.93
528 529 2.339769 AGGGGCCTTTAGTATGCCTAG 58.660 52.381 0.84 0.00 44.71 3.02
529 530 1.271434 GGGGCCTTTAGTATGCCTAGC 60.271 57.143 0.84 0.00 44.71 3.42
530 531 1.420138 GGGCCTTTAGTATGCCTAGCA 59.580 52.381 0.84 0.00 44.71 3.49
531 532 2.551071 GGGCCTTTAGTATGCCTAGCAG 60.551 54.545 0.84 0.00 43.65 4.24
532 533 2.551071 GGCCTTTAGTATGCCTAGCAGG 60.551 54.545 0.00 0.00 43.65 4.85
544 545 3.238108 CCTAGCAGGCGGTATAATGAG 57.762 52.381 0.00 0.00 0.00 2.90
545 546 2.826128 CCTAGCAGGCGGTATAATGAGA 59.174 50.000 0.00 0.00 0.00 3.27
546 547 3.258372 CCTAGCAGGCGGTATAATGAGAA 59.742 47.826 0.00 0.00 0.00 2.87
547 548 3.393089 AGCAGGCGGTATAATGAGAAG 57.607 47.619 0.00 0.00 0.00 2.85
548 549 2.700897 AGCAGGCGGTATAATGAGAAGT 59.299 45.455 0.00 0.00 0.00 3.01
549 550 3.895656 AGCAGGCGGTATAATGAGAAGTA 59.104 43.478 0.00 0.00 0.00 2.24
550 551 4.021894 AGCAGGCGGTATAATGAGAAGTAG 60.022 45.833 0.00 0.00 0.00 2.57
551 552 4.810790 CAGGCGGTATAATGAGAAGTAGG 58.189 47.826 0.00 0.00 0.00 3.18
552 553 3.833070 AGGCGGTATAATGAGAAGTAGGG 59.167 47.826 0.00 0.00 0.00 3.53
553 554 3.586892 GCGGTATAATGAGAAGTAGGGC 58.413 50.000 0.00 0.00 0.00 5.19
554 555 3.258622 GCGGTATAATGAGAAGTAGGGCT 59.741 47.826 0.00 0.00 0.00 5.19
555 556 4.810790 CGGTATAATGAGAAGTAGGGCTG 58.189 47.826 0.00 0.00 0.00 4.85
556 557 4.570930 GGTATAATGAGAAGTAGGGCTGC 58.429 47.826 0.00 0.00 0.00 5.25
557 558 4.040461 GGTATAATGAGAAGTAGGGCTGCA 59.960 45.833 0.50 0.00 0.00 4.41
558 559 2.409948 AATGAGAAGTAGGGCTGCAC 57.590 50.000 0.50 0.00 0.00 4.57
559 560 1.279496 ATGAGAAGTAGGGCTGCACA 58.721 50.000 4.01 0.00 0.00 4.57
560 561 1.055849 TGAGAAGTAGGGCTGCACAA 58.944 50.000 4.01 0.00 0.00 3.33
561 562 1.630369 TGAGAAGTAGGGCTGCACAAT 59.370 47.619 4.01 0.00 0.00 2.71
562 563 2.040278 TGAGAAGTAGGGCTGCACAATT 59.960 45.455 4.01 0.00 0.00 2.32
563 564 3.263170 TGAGAAGTAGGGCTGCACAATTA 59.737 43.478 4.01 0.00 0.00 1.40
564 565 4.080356 TGAGAAGTAGGGCTGCACAATTAT 60.080 41.667 4.01 0.00 0.00 1.28
565 566 4.455606 AGAAGTAGGGCTGCACAATTATC 58.544 43.478 4.01 0.00 0.00 1.75
566 567 3.214696 AGTAGGGCTGCACAATTATCC 57.785 47.619 4.01 0.00 0.00 2.59
567 568 2.509548 AGTAGGGCTGCACAATTATCCA 59.490 45.455 4.01 0.00 0.00 3.41
568 569 2.761786 AGGGCTGCACAATTATCCAT 57.238 45.000 4.01 0.00 0.00 3.41
577 578 6.349115 GCTGCACAATTATCCATATTCTCCAG 60.349 42.308 0.00 0.00 0.00 3.86
677 678 1.820519 TCGACGTGGCTATGTTAGGTT 59.179 47.619 0.00 0.00 0.00 3.50
711 807 7.816945 AGTGAAAGTACAATATTGCAATTGC 57.183 32.000 23.69 23.69 39.93 3.56
712 808 6.527722 AGTGAAAGTACAATATTGCAATTGCG 59.472 34.615 24.58 12.05 45.83 4.85
795 893 2.592102 ACTTGCCACATGAACAGGAT 57.408 45.000 0.00 0.00 0.00 3.24
918 1028 5.640357 TCGTACAAACTGCCACCTTTTATAG 59.360 40.000 0.00 0.00 0.00 1.31
934 1044 8.211629 ACCTTTTATAGATACCTGACCAATGTC 58.788 37.037 0.00 0.00 42.12 3.06
1419 1537 3.518998 GCGCAGGAGCTCCTCGTA 61.519 66.667 34.51 0.00 46.65 3.43
1491 1609 4.778415 CTCCAGGTGGTCGTCGCG 62.778 72.222 0.00 0.00 36.34 5.87
1759 1877 1.021390 CCTGTCCTTCATGACCGTGC 61.021 60.000 0.00 0.00 34.25 5.34
1776 1894 2.544698 GCTCGTCCTCGCGGTCTAT 61.545 63.158 6.13 0.00 36.96 1.98
1785 1903 1.865970 CTCGCGGTCTATCTCTACGTT 59.134 52.381 6.13 0.00 0.00 3.99
1793 1911 4.174009 GTCTATCTCTACGTTTGCAGCAA 58.826 43.478 2.83 2.83 0.00 3.91
1810 1928 1.377594 AAATACCCCGCCGACCAAC 60.378 57.895 0.00 0.00 0.00 3.77
1939 2057 3.371097 TTCGCGCCACTGGAGATCC 62.371 63.158 0.00 0.00 0.00 3.36
1990 2113 0.464373 CCCCGCAGATGCATTGTACT 60.464 55.000 0.00 0.00 42.21 2.73
1991 2114 1.202639 CCCCGCAGATGCATTGTACTA 60.203 52.381 0.00 0.00 42.21 1.82
1992 2115 1.867233 CCCGCAGATGCATTGTACTAC 59.133 52.381 0.00 0.00 42.21 2.73
2288 2696 2.632377 CAGACAATTCGTGCACCCTAT 58.368 47.619 12.15 0.00 0.00 2.57
2320 2728 1.403814 CTCTGGGATACTGAGCCGAA 58.596 55.000 0.00 0.00 38.16 4.30
2321 2729 1.067821 CTCTGGGATACTGAGCCGAAC 59.932 57.143 0.00 0.00 38.16 3.95
2322 2730 0.249073 CTGGGATACTGAGCCGAACG 60.249 60.000 0.00 0.00 28.78 3.95
2323 2731 0.968901 TGGGATACTGAGCCGAACGT 60.969 55.000 0.00 0.00 28.78 3.99
2368 2783 2.275767 GCGTCTCGTAGTCGATGAAAAC 59.724 50.000 0.00 0.00 45.21 2.43
2370 2785 2.275767 GTCTCGTAGTCGATGAAAACGC 59.724 50.000 0.00 0.00 45.21 4.84
2373 2788 1.582502 CGTAGTCGATGAAAACGCCTC 59.417 52.381 0.00 0.00 39.71 4.70
2433 2850 0.107410 ACAGGAAAACACGAGCACCA 60.107 50.000 0.00 0.00 0.00 4.17
2481 2898 1.215173 TGGGCTGATTCCACCATAAGG 59.785 52.381 0.00 0.00 42.21 2.69
2497 2914 7.282585 CACCATAAGGAATCTAACCATCTGAA 58.717 38.462 0.00 0.00 38.69 3.02
2528 2945 4.572389 CAGTTCAGCTCTGTTTAGTTGTGT 59.428 41.667 0.00 0.00 0.00 3.72
2529 2946 5.753438 CAGTTCAGCTCTGTTTAGTTGTGTA 59.247 40.000 0.00 0.00 0.00 2.90
2553 2970 2.508436 GGCAAGCCTCCTAGCCTC 59.492 66.667 3.29 0.00 43.70 4.70
2607 3024 5.259832 AGACGGTAATAGTAACTCCAAGC 57.740 43.478 0.00 0.00 0.00 4.01
2655 3072 2.224159 GGGGGACAAGAGGTGAGCA 61.224 63.158 0.00 0.00 0.00 4.26
2662 3079 3.182967 GACAAGAGGTGAGCAATAGACG 58.817 50.000 0.00 0.00 0.00 4.18
2669 3086 0.391130 TGAGCAATAGACGTGGCACC 60.391 55.000 12.86 0.00 0.00 5.01
2728 3145 0.327924 TGTCAATTGCCGACAGGGAT 59.672 50.000 0.00 0.00 38.45 3.85
2751 3168 4.142271 TGTTGGAAGGACATCAAACACAAC 60.142 41.667 0.00 0.00 38.12 3.32
2769 3186 0.699922 ACAAGGTGTGGGGTAAGGGT 60.700 55.000 0.00 0.00 0.00 4.34
2781 3198 0.030908 GTAAGGGTGATCTCTCGCGG 59.969 60.000 6.13 0.00 32.43 6.46
2785 3202 1.226717 GGTGATCTCTCGCGGTGTC 60.227 63.158 6.13 0.00 32.43 3.67
2791 3208 1.226802 CTCTCGCGGTGTCCATCTG 60.227 63.158 6.13 0.00 0.00 2.90
2842 3259 0.909610 AGGAGAAACGGATGCCCAGA 60.910 55.000 0.00 0.00 0.00 3.86
2930 3347 2.186903 CGGTCTCCCCCACAATCG 59.813 66.667 0.00 0.00 0.00 3.34
2931 3348 2.656069 CGGTCTCCCCCACAATCGT 61.656 63.158 0.00 0.00 0.00 3.73
2937 3354 1.204786 TCCCCCACAATCGTCACCAT 61.205 55.000 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.394938 ACGTGAGGTGGTGCATACAA 59.605 50.000 0.00 0.00 0.00 2.41
1 2 0.037697 GACGTGAGGTGGTGCATACA 60.038 55.000 0.00 0.00 0.00 2.29
2 3 0.037697 TGACGTGAGGTGGTGCATAC 60.038 55.000 0.00 0.00 0.00 2.39
3 4 0.037697 GTGACGTGAGGTGGTGCATA 60.038 55.000 0.00 0.00 0.00 3.14
4 5 1.301716 GTGACGTGAGGTGGTGCAT 60.302 57.895 0.00 0.00 0.00 3.96
5 6 2.038814 ATGTGACGTGAGGTGGTGCA 62.039 55.000 0.00 0.00 0.00 4.57
6 7 0.884704 AATGTGACGTGAGGTGGTGC 60.885 55.000 0.00 0.00 0.00 5.01
7 8 1.264020 CAAATGTGACGTGAGGTGGTG 59.736 52.381 0.00 0.00 0.00 4.17
8 9 1.593196 CAAATGTGACGTGAGGTGGT 58.407 50.000 0.00 0.00 0.00 4.16
9 10 0.238289 GCAAATGTGACGTGAGGTGG 59.762 55.000 0.00 0.00 0.00 4.61
10 11 0.943673 TGCAAATGTGACGTGAGGTG 59.056 50.000 0.00 0.00 0.00 4.00
11 12 1.674359 TTGCAAATGTGACGTGAGGT 58.326 45.000 0.00 0.00 0.00 3.85
12 13 2.226200 TCATTGCAAATGTGACGTGAGG 59.774 45.455 1.71 0.00 0.00 3.86
13 14 3.541071 TCATTGCAAATGTGACGTGAG 57.459 42.857 1.71 0.00 0.00 3.51
14 15 3.978718 TTCATTGCAAATGTGACGTGA 57.021 38.095 1.71 0.00 0.00 4.35
15 16 8.473796 CAATATATTCATTGCAAATGTGACGTG 58.526 33.333 1.71 0.00 0.00 4.49
16 17 8.190122 ACAATATATTCATTGCAAATGTGACGT 58.810 29.630 1.71 0.00 39.13 4.34
17 18 8.473796 CACAATATATTCATTGCAAATGTGACG 58.526 33.333 1.71 0.00 39.13 4.35
18 19 9.304731 ACACAATATATTCATTGCAAATGTGAC 57.695 29.630 1.71 0.00 39.13 3.67
19 20 9.303537 CACACAATATATTCATTGCAAATGTGA 57.696 29.630 1.71 0.00 39.31 3.58
20 21 9.303537 TCACACAATATATTCATTGCAAATGTG 57.696 29.630 1.71 9.95 38.85 3.21
21 22 9.524106 CTCACACAATATATTCATTGCAAATGT 57.476 29.630 1.71 0.00 39.13 2.71
22 23 8.484799 GCTCACACAATATATTCATTGCAAATG 58.515 33.333 1.71 2.77 39.13 2.32
23 24 8.418662 AGCTCACACAATATATTCATTGCAAAT 58.581 29.630 1.71 0.00 39.13 2.32
24 25 7.774134 AGCTCACACAATATATTCATTGCAAA 58.226 30.769 1.71 0.00 39.13 3.68
25 26 7.337480 AGCTCACACAATATATTCATTGCAA 57.663 32.000 0.00 0.00 39.13 4.08
26 27 6.947644 AGCTCACACAATATATTCATTGCA 57.052 33.333 0.00 0.00 39.13 4.08
30 31 9.376075 GCACTATAGCTCACACAATATATTCAT 57.624 33.333 0.00 0.00 0.00 2.57
31 32 8.367156 TGCACTATAGCTCACACAATATATTCA 58.633 33.333 0.00 0.00 34.99 2.57
32 33 8.763049 TGCACTATAGCTCACACAATATATTC 57.237 34.615 0.00 0.00 34.99 1.75
33 34 9.559732 TTTGCACTATAGCTCACACAATATATT 57.440 29.630 0.00 0.00 34.99 1.28
34 35 9.559732 TTTTGCACTATAGCTCACACAATATAT 57.440 29.630 0.00 0.00 34.99 0.86
35 36 8.826710 GTTTTGCACTATAGCTCACACAATATA 58.173 33.333 0.00 0.00 34.99 0.86
36 37 7.201732 GGTTTTGCACTATAGCTCACACAATAT 60.202 37.037 0.00 0.00 34.99 1.28
37 38 6.093495 GGTTTTGCACTATAGCTCACACAATA 59.907 38.462 0.00 0.00 34.99 1.90
38 39 5.106157 GGTTTTGCACTATAGCTCACACAAT 60.106 40.000 0.00 0.00 34.99 2.71
39 40 4.215399 GGTTTTGCACTATAGCTCACACAA 59.785 41.667 0.00 0.00 34.99 3.33
40 41 3.751175 GGTTTTGCACTATAGCTCACACA 59.249 43.478 0.00 0.00 34.99 3.72
41 42 3.127030 GGGTTTTGCACTATAGCTCACAC 59.873 47.826 0.00 0.00 34.99 3.82
42 43 3.244735 TGGGTTTTGCACTATAGCTCACA 60.245 43.478 0.00 0.00 34.99 3.58
43 44 3.343617 TGGGTTTTGCACTATAGCTCAC 58.656 45.455 0.00 0.00 34.99 3.51
44 45 3.712016 TGGGTTTTGCACTATAGCTCA 57.288 42.857 0.00 0.00 34.99 4.26
45 46 5.125417 TGATTTGGGTTTTGCACTATAGCTC 59.875 40.000 0.00 0.00 34.99 4.09
46 47 5.016173 TGATTTGGGTTTTGCACTATAGCT 58.984 37.500 0.00 0.00 34.99 3.32
47 48 5.323371 TGATTTGGGTTTTGCACTATAGC 57.677 39.130 0.00 0.00 0.00 2.97
48 49 6.924111 ACTTGATTTGGGTTTTGCACTATAG 58.076 36.000 0.00 0.00 0.00 1.31
49 50 6.909550 ACTTGATTTGGGTTTTGCACTATA 57.090 33.333 0.00 0.00 0.00 1.31
50 51 5.806654 ACTTGATTTGGGTTTTGCACTAT 57.193 34.783 0.00 0.00 0.00 2.12
51 52 5.278758 GCTACTTGATTTGGGTTTTGCACTA 60.279 40.000 0.00 0.00 0.00 2.74
52 53 4.501400 GCTACTTGATTTGGGTTTTGCACT 60.501 41.667 0.00 0.00 0.00 4.40
53 54 3.740832 GCTACTTGATTTGGGTTTTGCAC 59.259 43.478 0.00 0.00 0.00 4.57
54 55 3.386078 TGCTACTTGATTTGGGTTTTGCA 59.614 39.130 0.00 0.00 0.00 4.08
55 56 3.988819 TGCTACTTGATTTGGGTTTTGC 58.011 40.909 0.00 0.00 0.00 3.68
56 57 4.559153 CCTGCTACTTGATTTGGGTTTTG 58.441 43.478 0.00 0.00 0.00 2.44
57 58 3.578282 CCCTGCTACTTGATTTGGGTTTT 59.422 43.478 0.00 0.00 0.00 2.43
58 59 3.165071 CCCTGCTACTTGATTTGGGTTT 58.835 45.455 0.00 0.00 0.00 3.27
59 60 2.557452 CCCCTGCTACTTGATTTGGGTT 60.557 50.000 0.00 0.00 0.00 4.11
60 61 1.005924 CCCCTGCTACTTGATTTGGGT 59.994 52.381 0.00 0.00 0.00 4.51
61 62 1.686115 CCCCCTGCTACTTGATTTGGG 60.686 57.143 0.00 0.00 0.00 4.12
62 63 1.284785 TCCCCCTGCTACTTGATTTGG 59.715 52.381 0.00 0.00 0.00 3.28
63 64 2.806945 TCCCCCTGCTACTTGATTTG 57.193 50.000 0.00 0.00 0.00 2.32
64 65 2.024941 CCTTCCCCCTGCTACTTGATTT 60.025 50.000 0.00 0.00 0.00 2.17
65 66 1.566231 CCTTCCCCCTGCTACTTGATT 59.434 52.381 0.00 0.00 0.00 2.57
66 67 1.216990 CCTTCCCCCTGCTACTTGAT 58.783 55.000 0.00 0.00 0.00 2.57
67 68 1.562672 GCCTTCCCCCTGCTACTTGA 61.563 60.000 0.00 0.00 0.00 3.02
68 69 1.077429 GCCTTCCCCCTGCTACTTG 60.077 63.158 0.00 0.00 0.00 3.16
69 70 1.541368 TGCCTTCCCCCTGCTACTT 60.541 57.895 0.00 0.00 0.00 2.24
70 71 2.124996 TGCCTTCCCCCTGCTACT 59.875 61.111 0.00 0.00 0.00 2.57
71 72 2.137177 TTGTGCCTTCCCCCTGCTAC 62.137 60.000 0.00 0.00 0.00 3.58
72 73 1.431195 TTTGTGCCTTCCCCCTGCTA 61.431 55.000 0.00 0.00 0.00 3.49
73 74 2.720144 CTTTGTGCCTTCCCCCTGCT 62.720 60.000 0.00 0.00 0.00 4.24
74 75 2.203625 TTTGTGCCTTCCCCCTGC 60.204 61.111 0.00 0.00 0.00 4.85
75 76 0.178964 TTCTTTGTGCCTTCCCCCTG 60.179 55.000 0.00 0.00 0.00 4.45
76 77 0.786435 ATTCTTTGTGCCTTCCCCCT 59.214 50.000 0.00 0.00 0.00 4.79
77 78 0.897621 CATTCTTTGTGCCTTCCCCC 59.102 55.000 0.00 0.00 0.00 5.40
78 79 1.632589 ACATTCTTTGTGCCTTCCCC 58.367 50.000 0.00 0.00 37.11 4.81
79 80 3.303881 GAACATTCTTTGTGCCTTCCC 57.696 47.619 0.00 0.00 38.99 3.97
85 86 5.649831 AGATAAGGAGGAACATTCTTTGTGC 59.350 40.000 0.00 0.00 38.99 4.57
86 87 6.317391 GGAGATAAGGAGGAACATTCTTTGTG 59.683 42.308 0.00 0.00 38.99 3.33
87 88 6.012508 TGGAGATAAGGAGGAACATTCTTTGT 60.013 38.462 0.00 0.00 41.53 2.83
88 89 6.418101 TGGAGATAAGGAGGAACATTCTTTG 58.582 40.000 0.00 0.00 0.00 2.77
89 90 6.445139 TCTGGAGATAAGGAGGAACATTCTTT 59.555 38.462 0.00 0.00 0.00 2.52
90 91 5.966935 TCTGGAGATAAGGAGGAACATTCTT 59.033 40.000 0.00 0.00 0.00 2.52
91 92 5.533112 TCTGGAGATAAGGAGGAACATTCT 58.467 41.667 0.00 0.00 0.00 2.40
92 93 5.878406 TCTGGAGATAAGGAGGAACATTC 57.122 43.478 0.00 0.00 0.00 2.67
93 94 6.353429 CCTTTCTGGAGATAAGGAGGAACATT 60.353 42.308 10.01 0.00 40.71 2.71
94 95 5.131809 CCTTTCTGGAGATAAGGAGGAACAT 59.868 44.000 10.01 0.00 40.71 2.71
95 96 4.471386 CCTTTCTGGAGATAAGGAGGAACA 59.529 45.833 10.01 0.00 40.71 3.18
96 97 4.684757 GCCTTTCTGGAGATAAGGAGGAAC 60.685 50.000 15.90 1.95 40.71 3.62
97 98 3.456277 GCCTTTCTGGAGATAAGGAGGAA 59.544 47.826 15.90 0.00 40.71 3.36
98 99 3.041946 GCCTTTCTGGAGATAAGGAGGA 58.958 50.000 15.90 0.00 40.71 3.71
99 100 2.774234 TGCCTTTCTGGAGATAAGGAGG 59.226 50.000 15.90 0.00 40.71 4.30
100 101 4.494091 TTGCCTTTCTGGAGATAAGGAG 57.506 45.455 15.90 0.00 40.71 3.69
101 102 4.927267 TTTGCCTTTCTGGAGATAAGGA 57.073 40.909 15.90 4.90 40.71 3.36
102 103 5.256474 TCTTTTGCCTTTCTGGAGATAAGG 58.744 41.667 10.75 10.75 41.10 2.69
103 104 6.824305 TTCTTTTGCCTTTCTGGAGATAAG 57.176 37.500 0.00 0.00 38.35 1.73
104 105 7.595819 TTTTCTTTTGCCTTTCTGGAGATAA 57.404 32.000 0.00 0.00 38.35 1.75
105 106 7.595819 TTTTTCTTTTGCCTTTCTGGAGATA 57.404 32.000 0.00 0.00 38.35 1.98
106 107 6.484364 TTTTTCTTTTGCCTTTCTGGAGAT 57.516 33.333 0.00 0.00 38.35 2.75
107 108 5.930837 TTTTTCTTTTGCCTTTCTGGAGA 57.069 34.783 0.00 0.00 38.35 3.71
108 109 6.762661 TCAATTTTTCTTTTGCCTTTCTGGAG 59.237 34.615 0.00 0.00 38.35 3.86
109 110 6.648192 TCAATTTTTCTTTTGCCTTTCTGGA 58.352 32.000 0.00 0.00 38.35 3.86
110 111 6.512253 GCTCAATTTTTCTTTTGCCTTTCTGG 60.512 38.462 0.00 0.00 39.35 3.86
111 112 6.037391 TGCTCAATTTTTCTTTTGCCTTTCTG 59.963 34.615 0.00 0.00 0.00 3.02
112 113 6.037500 GTGCTCAATTTTTCTTTTGCCTTTCT 59.962 34.615 0.00 0.00 0.00 2.52
113 114 6.037500 AGTGCTCAATTTTTCTTTTGCCTTTC 59.962 34.615 0.00 0.00 0.00 2.62
114 115 5.882000 AGTGCTCAATTTTTCTTTTGCCTTT 59.118 32.000 0.00 0.00 0.00 3.11
115 116 5.430886 AGTGCTCAATTTTTCTTTTGCCTT 58.569 33.333 0.00 0.00 0.00 4.35
116 117 5.027293 AGTGCTCAATTTTTCTTTTGCCT 57.973 34.783 0.00 0.00 0.00 4.75
117 118 5.752955 TGTAGTGCTCAATTTTTCTTTTGCC 59.247 36.000 0.00 0.00 0.00 4.52
118 119 6.826893 TGTAGTGCTCAATTTTTCTTTTGC 57.173 33.333 0.00 0.00 0.00 3.68
119 120 9.033481 TCATTGTAGTGCTCAATTTTTCTTTTG 57.967 29.630 0.00 0.00 33.92 2.44
120 121 9.598517 TTCATTGTAGTGCTCAATTTTTCTTTT 57.401 25.926 0.00 0.00 33.92 2.27
121 122 9.768662 ATTCATTGTAGTGCTCAATTTTTCTTT 57.231 25.926 0.00 0.00 33.92 2.52
122 123 9.199982 CATTCATTGTAGTGCTCAATTTTTCTT 57.800 29.630 0.00 0.00 33.92 2.52
123 124 8.579006 TCATTCATTGTAGTGCTCAATTTTTCT 58.421 29.630 0.00 0.00 33.92 2.52
124 125 8.746922 TCATTCATTGTAGTGCTCAATTTTTC 57.253 30.769 0.00 0.00 33.92 2.29
125 126 7.330208 GCTCATTCATTGTAGTGCTCAATTTTT 59.670 33.333 0.00 0.00 33.92 1.94
126 127 6.810182 GCTCATTCATTGTAGTGCTCAATTTT 59.190 34.615 0.00 0.00 33.92 1.82
127 128 6.071784 TGCTCATTCATTGTAGTGCTCAATTT 60.072 34.615 0.00 0.00 33.92 1.82
128 129 5.416639 TGCTCATTCATTGTAGTGCTCAATT 59.583 36.000 0.00 0.00 33.92 2.32
129 130 4.945543 TGCTCATTCATTGTAGTGCTCAAT 59.054 37.500 0.00 0.00 36.16 2.57
130 131 4.325972 TGCTCATTCATTGTAGTGCTCAA 58.674 39.130 0.00 0.00 0.00 3.02
131 132 3.941573 TGCTCATTCATTGTAGTGCTCA 58.058 40.909 0.00 0.00 0.00 4.26
132 133 4.952262 TTGCTCATTCATTGTAGTGCTC 57.048 40.909 0.00 0.00 0.00 4.26
133 134 5.710513 TTTTGCTCATTCATTGTAGTGCT 57.289 34.783 0.00 0.00 0.00 4.40
134 135 8.638685 ATTATTTTGCTCATTCATTGTAGTGC 57.361 30.769 0.00 0.00 0.00 4.40
138 139 9.748708 GGCTAATTATTTTGCTCATTCATTGTA 57.251 29.630 4.29 0.00 34.54 2.41
139 140 8.259411 TGGCTAATTATTTTGCTCATTCATTGT 58.741 29.630 4.29 0.00 34.54 2.71
140 141 8.651391 TGGCTAATTATTTTGCTCATTCATTG 57.349 30.769 4.29 0.00 34.54 2.82
142 143 9.918630 GTATGGCTAATTATTTTGCTCATTCAT 57.081 29.630 10.41 5.87 34.54 2.57
143 144 9.135189 AGTATGGCTAATTATTTTGCTCATTCA 57.865 29.630 10.41 0.64 34.54 2.57
146 147 9.236006 CCTAGTATGGCTAATTATTTTGCTCAT 57.764 33.333 4.29 7.77 34.54 2.90
147 148 8.436778 TCCTAGTATGGCTAATTATTTTGCTCA 58.563 33.333 4.29 2.21 34.54 4.26
148 149 8.848474 TCCTAGTATGGCTAATTATTTTGCTC 57.152 34.615 4.29 0.00 34.54 4.26
155 156 9.439461 TCTGCATATCCTAGTATGGCTAATTAT 57.561 33.333 0.00 0.00 33.61 1.28
156 157 8.696374 GTCTGCATATCCTAGTATGGCTAATTA 58.304 37.037 0.00 0.00 33.61 1.40
157 158 7.180946 TGTCTGCATATCCTAGTATGGCTAATT 59.819 37.037 0.00 0.00 33.61 1.40
158 159 6.669591 TGTCTGCATATCCTAGTATGGCTAAT 59.330 38.462 0.00 0.00 33.61 1.73
159 160 6.016555 TGTCTGCATATCCTAGTATGGCTAA 58.983 40.000 0.00 0.00 33.61 3.09
160 161 5.419155 GTGTCTGCATATCCTAGTATGGCTA 59.581 44.000 0.00 0.00 33.61 3.93
161 162 4.221703 GTGTCTGCATATCCTAGTATGGCT 59.778 45.833 0.00 0.00 33.61 4.75
162 163 4.499183 GTGTCTGCATATCCTAGTATGGC 58.501 47.826 0.00 0.00 33.61 4.40
163 164 4.380973 CGGTGTCTGCATATCCTAGTATGG 60.381 50.000 0.00 0.00 33.61 2.74
164 165 4.459337 TCGGTGTCTGCATATCCTAGTATG 59.541 45.833 0.00 0.00 35.61 2.39
165 166 4.663334 TCGGTGTCTGCATATCCTAGTAT 58.337 43.478 0.00 0.00 0.00 2.12
166 167 4.094830 TCGGTGTCTGCATATCCTAGTA 57.905 45.455 0.00 0.00 0.00 1.82
167 168 2.945456 TCGGTGTCTGCATATCCTAGT 58.055 47.619 0.00 0.00 0.00 2.57
168 169 3.507622 TGATCGGTGTCTGCATATCCTAG 59.492 47.826 0.00 0.00 0.00 3.02
169 170 3.255888 GTGATCGGTGTCTGCATATCCTA 59.744 47.826 0.00 0.00 0.00 2.94
170 171 2.036475 GTGATCGGTGTCTGCATATCCT 59.964 50.000 0.00 0.00 0.00 3.24
171 172 2.036475 AGTGATCGGTGTCTGCATATCC 59.964 50.000 0.00 0.00 0.00 2.59
172 173 3.377346 AGTGATCGGTGTCTGCATATC 57.623 47.619 0.00 0.00 0.00 1.63
173 174 3.461061 CAAGTGATCGGTGTCTGCATAT 58.539 45.455 0.00 0.00 0.00 1.78
174 175 2.892374 CAAGTGATCGGTGTCTGCATA 58.108 47.619 0.00 0.00 0.00 3.14
175 176 1.730501 CAAGTGATCGGTGTCTGCAT 58.269 50.000 0.00 0.00 0.00 3.96
176 177 0.950555 GCAAGTGATCGGTGTCTGCA 60.951 55.000 0.00 0.00 0.00 4.41
177 178 0.950555 TGCAAGTGATCGGTGTCTGC 60.951 55.000 0.00 0.00 0.00 4.26
178 179 1.395954 CATGCAAGTGATCGGTGTCTG 59.604 52.381 0.00 0.00 0.00 3.51
179 180 1.276138 TCATGCAAGTGATCGGTGTCT 59.724 47.619 0.00 0.00 0.00 3.41
180 181 1.394917 GTCATGCAAGTGATCGGTGTC 59.605 52.381 0.00 0.00 0.00 3.67
181 182 1.002430 AGTCATGCAAGTGATCGGTGT 59.998 47.619 0.00 0.00 0.00 4.16
182 183 1.730501 AGTCATGCAAGTGATCGGTG 58.269 50.000 0.00 0.00 0.00 4.94
183 184 2.479566 AAGTCATGCAAGTGATCGGT 57.520 45.000 0.00 0.00 0.00 4.69
184 185 7.889589 TTATATAAGTCATGCAAGTGATCGG 57.110 36.000 0.00 0.00 0.00 4.18
225 226 1.197721 CCGCAGCAACACCTTTAAGAG 59.802 52.381 0.00 0.00 0.00 2.85
226 227 1.202710 TCCGCAGCAACACCTTTAAGA 60.203 47.619 0.00 0.00 0.00 2.10
227 228 1.234821 TCCGCAGCAACACCTTTAAG 58.765 50.000 0.00 0.00 0.00 1.85
228 229 1.606668 CTTCCGCAGCAACACCTTTAA 59.393 47.619 0.00 0.00 0.00 1.52
229 230 1.202710 TCTTCCGCAGCAACACCTTTA 60.203 47.619 0.00 0.00 0.00 1.85
230 231 0.465460 TCTTCCGCAGCAACACCTTT 60.465 50.000 0.00 0.00 0.00 3.11
231 232 0.465460 TTCTTCCGCAGCAACACCTT 60.465 50.000 0.00 0.00 0.00 3.50
232 233 0.886490 CTTCTTCCGCAGCAACACCT 60.886 55.000 0.00 0.00 0.00 4.00
233 234 1.166531 ACTTCTTCCGCAGCAACACC 61.167 55.000 0.00 0.00 0.00 4.16
234 235 0.663153 AACTTCTTCCGCAGCAACAC 59.337 50.000 0.00 0.00 0.00 3.32
235 236 0.662619 CAACTTCTTCCGCAGCAACA 59.337 50.000 0.00 0.00 0.00 3.33
236 237 0.663153 ACAACTTCTTCCGCAGCAAC 59.337 50.000 0.00 0.00 0.00 4.17
237 238 0.944386 GACAACTTCTTCCGCAGCAA 59.056 50.000 0.00 0.00 0.00 3.91
238 239 0.106708 AGACAACTTCTTCCGCAGCA 59.893 50.000 0.00 0.00 0.00 4.41
239 240 1.230324 AAGACAACTTCTTCCGCAGC 58.770 50.000 0.00 0.00 40.98 5.25
240 241 3.654414 ACTAAGACAACTTCTTCCGCAG 58.346 45.455 0.00 0.00 44.02 5.18
241 242 3.069016 TGACTAAGACAACTTCTTCCGCA 59.931 43.478 0.00 0.00 44.02 5.69
242 243 3.650139 TGACTAAGACAACTTCTTCCGC 58.350 45.455 0.00 0.00 44.02 5.54
243 244 6.037098 CCTATGACTAAGACAACTTCTTCCG 58.963 44.000 0.00 0.00 44.02 4.30
244 245 6.814146 CACCTATGACTAAGACAACTTCTTCC 59.186 42.308 0.00 0.00 44.02 3.46
245 246 7.379750 ACACCTATGACTAAGACAACTTCTTC 58.620 38.462 0.00 0.00 44.02 2.87
246 247 7.304497 ACACCTATGACTAAGACAACTTCTT 57.696 36.000 0.00 0.00 46.91 2.52
247 248 6.919775 ACACCTATGACTAAGACAACTTCT 57.080 37.500 0.00 0.00 37.53 2.85
248 249 7.379750 AGAACACCTATGACTAAGACAACTTC 58.620 38.462 0.00 0.00 37.53 3.01
249 250 7.233757 AGAGAACACCTATGACTAAGACAACTT 59.766 37.037 0.00 0.00 39.81 2.66
250 251 6.722129 AGAGAACACCTATGACTAAGACAACT 59.278 38.462 0.00 0.00 0.00 3.16
251 252 6.926313 AGAGAACACCTATGACTAAGACAAC 58.074 40.000 0.00 0.00 0.00 3.32
252 253 7.540474 AAGAGAACACCTATGACTAAGACAA 57.460 36.000 0.00 0.00 0.00 3.18
253 254 7.540474 AAAGAGAACACCTATGACTAAGACA 57.460 36.000 0.00 0.00 0.00 3.41
254 255 8.834749 AAAAAGAGAACACCTATGACTAAGAC 57.165 34.615 0.00 0.00 0.00 3.01
255 256 8.647796 TGAAAAAGAGAACACCTATGACTAAGA 58.352 33.333 0.00 0.00 0.00 2.10
256 257 8.833231 TGAAAAAGAGAACACCTATGACTAAG 57.167 34.615 0.00 0.00 0.00 2.18
259 260 9.606631 GATATGAAAAAGAGAACACCTATGACT 57.393 33.333 0.00 0.00 0.00 3.41
260 261 9.606631 AGATATGAAAAAGAGAACACCTATGAC 57.393 33.333 0.00 0.00 0.00 3.06
275 276 9.651913 GGCCAAAATGTTAGAAGATATGAAAAA 57.348 29.630 0.00 0.00 0.00 1.94
276 277 8.257306 GGGCCAAAATGTTAGAAGATATGAAAA 58.743 33.333 4.39 0.00 0.00 2.29
277 278 7.619302 AGGGCCAAAATGTTAGAAGATATGAAA 59.381 33.333 6.18 0.00 0.00 2.69
278 279 7.068593 CAGGGCCAAAATGTTAGAAGATATGAA 59.931 37.037 6.18 0.00 0.00 2.57
279 280 6.547141 CAGGGCCAAAATGTTAGAAGATATGA 59.453 38.462 6.18 0.00 0.00 2.15
280 281 6.239120 CCAGGGCCAAAATGTTAGAAGATATG 60.239 42.308 6.18 0.00 0.00 1.78
281 282 5.835280 CCAGGGCCAAAATGTTAGAAGATAT 59.165 40.000 6.18 0.00 0.00 1.63
282 283 5.200483 CCAGGGCCAAAATGTTAGAAGATA 58.800 41.667 6.18 0.00 0.00 1.98
283 284 4.026052 CCAGGGCCAAAATGTTAGAAGAT 58.974 43.478 6.18 0.00 0.00 2.40
284 285 3.181423 ACCAGGGCCAAAATGTTAGAAGA 60.181 43.478 6.18 0.00 0.00 2.87
285 286 3.165071 ACCAGGGCCAAAATGTTAGAAG 58.835 45.455 6.18 0.00 0.00 2.85
286 287 3.252554 ACCAGGGCCAAAATGTTAGAA 57.747 42.857 6.18 0.00 0.00 2.10
287 288 2.990740 ACCAGGGCCAAAATGTTAGA 57.009 45.000 6.18 0.00 0.00 2.10
288 289 3.119137 GCTAACCAGGGCCAAAATGTTAG 60.119 47.826 6.18 18.16 38.62 2.34
289 290 2.829120 GCTAACCAGGGCCAAAATGTTA 59.171 45.455 6.18 4.88 0.00 2.41
290 291 1.623311 GCTAACCAGGGCCAAAATGTT 59.377 47.619 6.18 3.87 0.00 2.71
291 292 1.203174 AGCTAACCAGGGCCAAAATGT 60.203 47.619 6.18 0.00 0.00 2.71
292 293 1.560505 AGCTAACCAGGGCCAAAATG 58.439 50.000 6.18 0.00 0.00 2.32
293 294 2.302733 CAAAGCTAACCAGGGCCAAAAT 59.697 45.455 6.18 0.00 0.00 1.82
294 295 1.691434 CAAAGCTAACCAGGGCCAAAA 59.309 47.619 6.18 0.00 0.00 2.44
295 296 1.337118 CAAAGCTAACCAGGGCCAAA 58.663 50.000 6.18 0.00 0.00 3.28
296 297 0.187361 ACAAAGCTAACCAGGGCCAA 59.813 50.000 6.18 0.00 0.00 4.52
297 298 0.187361 AACAAAGCTAACCAGGGCCA 59.813 50.000 6.18 0.00 0.00 5.36
298 299 2.209690 TAACAAAGCTAACCAGGGCC 57.790 50.000 0.00 0.00 0.00 5.80
299 300 3.089284 ACATAACAAAGCTAACCAGGGC 58.911 45.455 0.00 0.00 0.00 5.19
300 301 5.497474 AGTACATAACAAAGCTAACCAGGG 58.503 41.667 0.00 0.00 0.00 4.45
301 302 7.305474 CAAAGTACATAACAAAGCTAACCAGG 58.695 38.462 0.00 0.00 0.00 4.45
302 303 6.801862 GCAAAGTACATAACAAAGCTAACCAG 59.198 38.462 0.00 0.00 0.00 4.00
303 304 6.488683 AGCAAAGTACATAACAAAGCTAACCA 59.511 34.615 0.00 0.00 31.43 3.67
304 305 6.909909 AGCAAAGTACATAACAAAGCTAACC 58.090 36.000 0.00 0.00 31.43 2.85
305 306 9.887406 TTAAGCAAAGTACATAACAAAGCTAAC 57.113 29.630 0.00 0.00 32.45 2.34
332 333 9.620259 TGATGCACACAACCATTATTAATACTA 57.380 29.630 0.00 0.00 0.00 1.82
333 334 8.518430 TGATGCACACAACCATTATTAATACT 57.482 30.769 0.00 0.00 0.00 2.12
337 338 9.747293 CATTATGATGCACACAACCATTATTAA 57.253 29.630 0.00 0.00 0.00 1.40
338 339 9.129532 TCATTATGATGCACACAACCATTATTA 57.870 29.630 0.00 0.00 33.14 0.98
339 340 8.009622 TCATTATGATGCACACAACCATTATT 57.990 30.769 0.00 0.00 33.14 1.40
340 341 7.585579 TCATTATGATGCACACAACCATTAT 57.414 32.000 0.00 0.00 33.14 1.28
341 342 7.427214 CATCATTATGATGCACACAACCATTA 58.573 34.615 20.33 0.00 46.37 1.90
342 343 5.918426 TCATTATGATGCACACAACCATT 57.082 34.783 0.00 0.00 33.14 3.16
343 344 5.838529 CATCATTATGATGCACACAACCAT 58.161 37.500 20.33 0.00 46.37 3.55
344 345 5.251601 CATCATTATGATGCACACAACCA 57.748 39.130 20.33 0.00 46.37 3.67
355 356 6.123045 TCCAGACATCTGCATCATTATGAT 57.877 37.500 1.25 1.25 42.47 2.45
356 357 5.556006 TCCAGACATCTGCATCATTATGA 57.444 39.130 3.18 0.00 42.47 2.15
357 358 6.819397 AATCCAGACATCTGCATCATTATG 57.181 37.500 3.18 0.00 42.47 1.90
358 359 7.002276 TGAAATCCAGACATCTGCATCATTAT 58.998 34.615 3.18 0.00 42.47 1.28
359 360 6.358991 TGAAATCCAGACATCTGCATCATTA 58.641 36.000 3.18 0.00 42.47 1.90
360 361 5.198207 TGAAATCCAGACATCTGCATCATT 58.802 37.500 3.18 0.00 42.47 2.57
361 362 4.788679 TGAAATCCAGACATCTGCATCAT 58.211 39.130 3.18 0.00 42.47 2.45
362 363 4.224991 TGAAATCCAGACATCTGCATCA 57.775 40.909 3.18 2.55 42.47 3.07
363 364 4.201990 GGTTGAAATCCAGACATCTGCATC 60.202 45.833 3.18 0.19 42.47 3.91
364 365 3.698040 GGTTGAAATCCAGACATCTGCAT 59.302 43.478 3.18 0.00 42.47 3.96
365 366 3.084039 GGTTGAAATCCAGACATCTGCA 58.916 45.455 3.18 0.00 42.47 4.41
366 367 3.350833 AGGTTGAAATCCAGACATCTGC 58.649 45.455 3.18 0.00 42.47 4.26
367 368 4.841422 AGAGGTTGAAATCCAGACATCTG 58.159 43.478 1.63 1.63 43.40 2.90
368 369 5.511386 AAGAGGTTGAAATCCAGACATCT 57.489 39.130 0.00 0.00 34.97 2.90
369 370 6.581171 AAAAGAGGTTGAAATCCAGACATC 57.419 37.500 0.00 0.00 0.00 3.06
370 371 6.550854 TCAAAAAGAGGTTGAAATCCAGACAT 59.449 34.615 0.00 0.00 32.13 3.06
371 372 5.890985 TCAAAAAGAGGTTGAAATCCAGACA 59.109 36.000 0.00 0.00 32.13 3.41
372 373 6.391227 TCAAAAAGAGGTTGAAATCCAGAC 57.609 37.500 0.00 0.00 32.13 3.51
373 374 7.416964 TTTCAAAAAGAGGTTGAAATCCAGA 57.583 32.000 7.95 0.00 45.44 3.86
380 381 6.152661 TCAGCTTCTTTCAAAAAGAGGTTGAA 59.847 34.615 20.59 6.17 39.36 2.69
381 382 5.652014 TCAGCTTCTTTCAAAAAGAGGTTGA 59.348 36.000 19.63 19.63 39.76 3.18
382 383 5.894807 TCAGCTTCTTTCAAAAAGAGGTTG 58.105 37.500 16.76 16.76 36.44 3.77
383 384 6.530019 TTCAGCTTCTTTCAAAAAGAGGTT 57.470 33.333 11.62 4.75 0.00 3.50
384 385 6.333416 GTTTCAGCTTCTTTCAAAAAGAGGT 58.667 36.000 11.62 5.90 0.00 3.85
385 386 5.456822 CGTTTCAGCTTCTTTCAAAAAGAGG 59.543 40.000 7.07 7.07 0.00 3.69
386 387 5.052106 GCGTTTCAGCTTCTTTCAAAAAGAG 60.052 40.000 2.70 0.27 0.00 2.85
387 388 4.798387 GCGTTTCAGCTTCTTTCAAAAAGA 59.202 37.500 0.00 0.00 0.00 2.52
388 389 4.316653 CGCGTTTCAGCTTCTTTCAAAAAG 60.317 41.667 0.00 0.00 34.40 2.27
389 390 3.545873 CGCGTTTCAGCTTCTTTCAAAAA 59.454 39.130 0.00 0.00 34.40 1.94
390 391 3.105203 CGCGTTTCAGCTTCTTTCAAAA 58.895 40.909 0.00 0.00 34.40 2.44
391 392 2.715268 CGCGTTTCAGCTTCTTTCAAA 58.285 42.857 0.00 0.00 34.40 2.69
392 393 1.596954 GCGCGTTTCAGCTTCTTTCAA 60.597 47.619 8.43 0.00 34.40 2.69
393 394 0.041312 GCGCGTTTCAGCTTCTTTCA 60.041 50.000 8.43 0.00 34.40 2.69
394 395 0.041312 TGCGCGTTTCAGCTTCTTTC 60.041 50.000 8.43 0.00 34.40 2.62
395 396 0.040958 CTGCGCGTTTCAGCTTCTTT 60.041 50.000 8.43 0.00 34.40 2.52
396 397 1.571460 CTGCGCGTTTCAGCTTCTT 59.429 52.632 8.43 0.00 34.40 2.52
397 398 2.320587 CCTGCGCGTTTCAGCTTCT 61.321 57.895 8.43 0.00 34.40 2.85
398 399 2.174349 CCTGCGCGTTTCAGCTTC 59.826 61.111 8.43 0.00 34.40 3.86
399 400 3.357079 CCCTGCGCGTTTCAGCTT 61.357 61.111 8.43 0.00 34.40 3.74
421 422 3.117512 AGGAACACAATCATGTATCCCCC 60.118 47.826 8.52 0.00 41.96 5.40
422 423 4.137543 GAGGAACACAATCATGTATCCCC 58.862 47.826 8.52 0.00 41.96 4.81
423 424 5.041191 AGAGGAACACAATCATGTATCCC 57.959 43.478 8.52 0.00 41.96 3.85
424 425 6.352516 AGAAGAGGAACACAATCATGTATCC 58.647 40.000 0.00 5.34 41.61 2.59
425 426 7.856145 AAGAAGAGGAACACAATCATGTATC 57.144 36.000 0.00 0.00 37.82 2.24
426 427 7.667219 ACAAAGAAGAGGAACACAATCATGTAT 59.333 33.333 0.00 0.00 37.82 2.29
427 428 6.998074 ACAAAGAAGAGGAACACAATCATGTA 59.002 34.615 0.00 0.00 37.82 2.29
428 429 5.829924 ACAAAGAAGAGGAACACAATCATGT 59.170 36.000 0.00 0.00 41.61 3.21
429 430 6.323203 ACAAAGAAGAGGAACACAATCATG 57.677 37.500 0.00 0.00 0.00 3.07
430 431 6.966534 AACAAAGAAGAGGAACACAATCAT 57.033 33.333 0.00 0.00 0.00 2.45
431 432 6.376864 TCAAACAAAGAAGAGGAACACAATCA 59.623 34.615 0.00 0.00 0.00 2.57
432 433 6.795399 TCAAACAAAGAAGAGGAACACAATC 58.205 36.000 0.00 0.00 0.00 2.67
433 434 6.773976 TCAAACAAAGAAGAGGAACACAAT 57.226 33.333 0.00 0.00 0.00 2.71
434 435 6.773976 ATCAAACAAAGAAGAGGAACACAA 57.226 33.333 0.00 0.00 0.00 3.33
435 436 6.773976 AATCAAACAAAGAAGAGGAACACA 57.226 33.333 0.00 0.00 0.00 3.72
436 437 8.479313 AAAAATCAAACAAAGAAGAGGAACAC 57.521 30.769 0.00 0.00 0.00 3.32
450 451 9.195411 GCTCATGAACTTCATAAAAATCAAACA 57.805 29.630 3.88 0.00 34.28 2.83
451 452 9.195411 TGCTCATGAACTTCATAAAAATCAAAC 57.805 29.630 3.88 0.00 34.28 2.93
452 453 9.932207 ATGCTCATGAACTTCATAAAAATCAAA 57.068 25.926 3.88 0.00 34.28 2.69
453 454 9.577110 GATGCTCATGAACTTCATAAAAATCAA 57.423 29.630 3.88 0.00 34.28 2.57
454 455 8.741841 TGATGCTCATGAACTTCATAAAAATCA 58.258 29.630 9.87 8.83 34.28 2.57
455 456 9.577110 TTGATGCTCATGAACTTCATAAAAATC 57.423 29.630 13.59 6.78 34.28 2.17
456 457 9.582431 CTTGATGCTCATGAACTTCATAAAAAT 57.418 29.630 13.59 0.00 34.28 1.82
457 458 8.579006 ACTTGATGCTCATGAACTTCATAAAAA 58.421 29.630 13.59 0.99 34.28 1.94
458 459 8.114331 ACTTGATGCTCATGAACTTCATAAAA 57.886 30.769 13.59 1.28 34.28 1.52
459 460 7.692460 ACTTGATGCTCATGAACTTCATAAA 57.308 32.000 13.59 6.19 34.28 1.40
460 461 7.692460 AACTTGATGCTCATGAACTTCATAA 57.308 32.000 13.59 2.15 34.28 1.90
461 462 7.692460 AAACTTGATGCTCATGAACTTCATA 57.308 32.000 13.59 6.27 34.28 2.15
462 463 6.585695 AAACTTGATGCTCATGAACTTCAT 57.414 33.333 13.59 7.17 37.65 2.57
463 464 6.395426 AAAACTTGATGCTCATGAACTTCA 57.605 33.333 9.87 9.87 0.00 3.02
464 465 6.919662 TCAAAAACTTGATGCTCATGAACTTC 59.080 34.615 0.00 0.72 0.00 3.01
465 466 6.698766 GTCAAAAACTTGATGCTCATGAACTT 59.301 34.615 0.00 0.00 33.02 2.66
466 467 6.183360 TGTCAAAAACTTGATGCTCATGAACT 60.183 34.615 0.00 0.00 33.02 3.01
467 468 5.978919 TGTCAAAAACTTGATGCTCATGAAC 59.021 36.000 0.00 0.00 33.02 3.18
468 469 6.146601 TGTCAAAAACTTGATGCTCATGAA 57.853 33.333 0.00 0.00 33.02 2.57
469 470 5.771153 TGTCAAAAACTTGATGCTCATGA 57.229 34.783 0.00 0.00 33.02 3.07
470 471 5.404366 CCTTGTCAAAAACTTGATGCTCATG 59.596 40.000 0.00 0.00 33.02 3.07
471 472 5.535333 CCTTGTCAAAAACTTGATGCTCAT 58.465 37.500 0.00 0.00 33.02 2.90
472 473 4.737352 GCCTTGTCAAAAACTTGATGCTCA 60.737 41.667 0.00 0.00 33.02 4.26
473 474 3.737774 GCCTTGTCAAAAACTTGATGCTC 59.262 43.478 0.00 0.00 33.02 4.26
474 475 3.132646 TGCCTTGTCAAAAACTTGATGCT 59.867 39.130 0.00 0.00 33.02 3.79
475 476 3.456280 TGCCTTGTCAAAAACTTGATGC 58.544 40.909 0.00 0.00 33.02 3.91
476 477 5.502869 GCTTTGCCTTGTCAAAAACTTGATG 60.503 40.000 0.00 0.00 35.75 3.07
477 478 4.571984 GCTTTGCCTTGTCAAAAACTTGAT 59.428 37.500 0.00 0.00 35.75 2.57
478 479 3.932089 GCTTTGCCTTGTCAAAAACTTGA 59.068 39.130 0.00 0.00 35.75 3.02
479 480 3.242059 CGCTTTGCCTTGTCAAAAACTTG 60.242 43.478 0.00 0.00 35.75 3.16
480 481 2.929398 CGCTTTGCCTTGTCAAAAACTT 59.071 40.909 0.00 0.00 35.75 2.66
481 482 2.165437 TCGCTTTGCCTTGTCAAAAACT 59.835 40.909 0.00 0.00 35.75 2.66
482 483 2.535331 TCGCTTTGCCTTGTCAAAAAC 58.465 42.857 0.00 0.00 35.75 2.43
483 484 2.808244 CTCGCTTTGCCTTGTCAAAAA 58.192 42.857 0.00 0.00 35.75 1.94
484 485 1.535860 GCTCGCTTTGCCTTGTCAAAA 60.536 47.619 0.00 0.00 35.75 2.44
485 486 0.030638 GCTCGCTTTGCCTTGTCAAA 59.969 50.000 0.00 0.00 35.01 2.69
486 487 1.100463 TGCTCGCTTTGCCTTGTCAA 61.100 50.000 0.00 0.00 0.00 3.18
487 488 1.509644 CTGCTCGCTTTGCCTTGTCA 61.510 55.000 0.00 0.00 0.00 3.58
488 489 1.208614 CTGCTCGCTTTGCCTTGTC 59.791 57.895 0.00 0.00 0.00 3.18
489 490 0.250295 TACTGCTCGCTTTGCCTTGT 60.250 50.000 0.00 0.00 0.00 3.16
490 491 0.445436 CTACTGCTCGCTTTGCCTTG 59.555 55.000 0.00 0.00 0.00 3.61
491 492 0.674895 CCTACTGCTCGCTTTGCCTT 60.675 55.000 0.00 0.00 0.00 4.35
492 493 1.078848 CCTACTGCTCGCTTTGCCT 60.079 57.895 0.00 0.00 0.00 4.75
493 494 2.109126 CCCTACTGCTCGCTTTGCC 61.109 63.158 0.00 0.00 0.00 4.52
494 495 2.109126 CCCCTACTGCTCGCTTTGC 61.109 63.158 0.00 0.00 0.00 3.68
495 496 2.109126 GCCCCTACTGCTCGCTTTG 61.109 63.158 0.00 0.00 0.00 2.77
496 497 2.269241 GCCCCTACTGCTCGCTTT 59.731 61.111 0.00 0.00 0.00 3.51
497 498 3.787001 GGCCCCTACTGCTCGCTT 61.787 66.667 0.00 0.00 0.00 4.68
498 499 4.787280 AGGCCCCTACTGCTCGCT 62.787 66.667 0.00 0.00 0.00 4.93
499 500 1.968050 TAAAGGCCCCTACTGCTCGC 61.968 60.000 0.00 0.00 0.00 5.03
500 501 0.105039 CTAAAGGCCCCTACTGCTCG 59.895 60.000 0.00 0.00 0.00 5.03
501 502 1.205055 ACTAAAGGCCCCTACTGCTC 58.795 55.000 0.00 0.00 0.00 4.26
502 503 2.563039 TACTAAAGGCCCCTACTGCT 57.437 50.000 0.00 0.00 0.00 4.24
503 504 2.810767 GCATACTAAAGGCCCCTACTGC 60.811 54.545 0.00 0.00 0.00 4.40
504 505 2.224548 GGCATACTAAAGGCCCCTACTG 60.225 54.545 0.00 0.00 41.90 2.74
505 506 2.055579 GGCATACTAAAGGCCCCTACT 58.944 52.381 0.00 0.00 41.90 2.57
506 507 2.563261 GGCATACTAAAGGCCCCTAC 57.437 55.000 0.00 0.00 41.90 3.18
512 513 2.772287 CCTGCTAGGCATACTAAAGGC 58.228 52.381 0.00 0.00 38.13 4.35
524 525 2.826128 TCTCATTATACCGCCTGCTAGG 59.174 50.000 0.00 0.00 38.80 3.02
525 526 4.021894 ACTTCTCATTATACCGCCTGCTAG 60.022 45.833 0.00 0.00 0.00 3.42
526 527 3.895656 ACTTCTCATTATACCGCCTGCTA 59.104 43.478 0.00 0.00 0.00 3.49
527 528 2.700897 ACTTCTCATTATACCGCCTGCT 59.299 45.455 0.00 0.00 0.00 4.24
528 529 3.113260 ACTTCTCATTATACCGCCTGC 57.887 47.619 0.00 0.00 0.00 4.85
529 530 4.322049 CCCTACTTCTCATTATACCGCCTG 60.322 50.000 0.00 0.00 0.00 4.85
530 531 3.833070 CCCTACTTCTCATTATACCGCCT 59.167 47.826 0.00 0.00 0.00 5.52
531 532 3.616802 GCCCTACTTCTCATTATACCGCC 60.617 52.174 0.00 0.00 0.00 6.13
532 533 3.258622 AGCCCTACTTCTCATTATACCGC 59.741 47.826 0.00 0.00 0.00 5.68
533 534 4.810790 CAGCCCTACTTCTCATTATACCG 58.189 47.826 0.00 0.00 0.00 4.02
534 535 4.040461 TGCAGCCCTACTTCTCATTATACC 59.960 45.833 0.00 0.00 0.00 2.73
535 536 4.991687 GTGCAGCCCTACTTCTCATTATAC 59.008 45.833 0.00 0.00 0.00 1.47
536 537 4.653801 TGTGCAGCCCTACTTCTCATTATA 59.346 41.667 0.00 0.00 0.00 0.98
537 538 3.455910 TGTGCAGCCCTACTTCTCATTAT 59.544 43.478 0.00 0.00 0.00 1.28
538 539 2.837591 TGTGCAGCCCTACTTCTCATTA 59.162 45.455 0.00 0.00 0.00 1.90
539 540 1.630369 TGTGCAGCCCTACTTCTCATT 59.370 47.619 0.00 0.00 0.00 2.57
540 541 1.279496 TGTGCAGCCCTACTTCTCAT 58.721 50.000 0.00 0.00 0.00 2.90
541 542 1.055849 TTGTGCAGCCCTACTTCTCA 58.944 50.000 0.00 0.00 0.00 3.27
542 543 2.409948 ATTGTGCAGCCCTACTTCTC 57.590 50.000 0.00 0.00 0.00 2.87
543 544 2.887151 AATTGTGCAGCCCTACTTCT 57.113 45.000 0.00 0.00 0.00 2.85
544 545 3.565902 GGATAATTGTGCAGCCCTACTTC 59.434 47.826 0.00 0.00 0.00 3.01
545 546 3.053693 TGGATAATTGTGCAGCCCTACTT 60.054 43.478 0.00 0.00 0.00 2.24
546 547 2.509548 TGGATAATTGTGCAGCCCTACT 59.490 45.455 0.00 0.00 0.00 2.57
547 548 2.930950 TGGATAATTGTGCAGCCCTAC 58.069 47.619 0.00 0.00 0.00 3.18
548 549 3.882102 ATGGATAATTGTGCAGCCCTA 57.118 42.857 2.44 0.00 0.00 3.53
549 550 2.761786 ATGGATAATTGTGCAGCCCT 57.238 45.000 2.44 0.00 0.00 5.19
550 551 4.768968 AGAATATGGATAATTGTGCAGCCC 59.231 41.667 2.44 0.00 0.00 5.19
551 552 5.105997 GGAGAATATGGATAATTGTGCAGCC 60.106 44.000 2.44 0.00 0.00 4.85
552 553 5.474532 TGGAGAATATGGATAATTGTGCAGC 59.525 40.000 2.44 0.00 0.00 5.25
553 554 6.713903 ACTGGAGAATATGGATAATTGTGCAG 59.286 38.462 11.22 11.22 40.81 4.41
554 555 6.604171 ACTGGAGAATATGGATAATTGTGCA 58.396 36.000 0.00 0.00 0.00 4.57
555 556 7.516198 AACTGGAGAATATGGATAATTGTGC 57.484 36.000 0.00 0.00 0.00 4.57
556 557 9.956720 GAAAACTGGAGAATATGGATAATTGTG 57.043 33.333 0.00 0.00 0.00 3.33
557 558 9.699410 TGAAAACTGGAGAATATGGATAATTGT 57.301 29.630 0.00 0.00 0.00 2.71
560 561 9.927081 ACTTGAAAACTGGAGAATATGGATAAT 57.073 29.630 0.00 0.00 0.00 1.28
561 562 9.177608 CACTTGAAAACTGGAGAATATGGATAA 57.822 33.333 0.00 0.00 0.00 1.75
562 563 8.328758 ACACTTGAAAACTGGAGAATATGGATA 58.671 33.333 0.00 0.00 0.00 2.59
563 564 7.121759 CACACTTGAAAACTGGAGAATATGGAT 59.878 37.037 0.00 0.00 0.00 3.41
564 565 6.430925 CACACTTGAAAACTGGAGAATATGGA 59.569 38.462 0.00 0.00 0.00 3.41
565 566 6.207417 ACACACTTGAAAACTGGAGAATATGG 59.793 38.462 0.00 0.00 0.00 2.74
566 567 7.206981 ACACACTTGAAAACTGGAGAATATG 57.793 36.000 0.00 0.00 0.00 1.78
567 568 7.721399 AGAACACACTTGAAAACTGGAGAATAT 59.279 33.333 0.00 0.00 0.00 1.28
568 569 7.054124 AGAACACACTTGAAAACTGGAGAATA 58.946 34.615 0.00 0.00 0.00 1.75
577 578 7.441458 AGACTATGGTAGAACACACTTGAAAAC 59.559 37.037 0.00 0.00 0.00 2.43
677 678 5.392767 TTGTACTTTCACTTTTGCACCAA 57.607 34.783 0.00 0.00 0.00 3.67
711 807 4.272504 TGTCTTCTAAGAAAAGGTTGCACG 59.727 41.667 0.00 0.00 36.68 5.34
712 808 5.751243 TGTCTTCTAAGAAAAGGTTGCAC 57.249 39.130 0.00 0.00 36.68 4.57
813 911 3.743396 GGAGTTGCTTGTAAGTCAGTCAG 59.257 47.826 8.17 0.00 32.78 3.51
814 912 3.388024 AGGAGTTGCTTGTAAGTCAGTCA 59.612 43.478 8.17 0.00 32.78 3.41
815 913 3.996480 AGGAGTTGCTTGTAAGTCAGTC 58.004 45.455 8.17 0.00 32.78 3.51
816 914 4.423625 AAGGAGTTGCTTGTAAGTCAGT 57.576 40.909 8.17 0.00 32.78 3.41
918 1028 1.202651 CGGGGACATTGGTCAGGTATC 60.203 57.143 0.00 0.00 46.17 2.24
1272 1390 1.961277 GTGCTCGTGGTTGTGGAGG 60.961 63.158 0.00 0.00 0.00 4.30
1308 1426 2.331805 CCCGCGTAGACGATGAGG 59.668 66.667 4.92 3.14 43.02 3.86
1383 1501 2.279918 AACACCACCGACACGAGC 60.280 61.111 0.00 0.00 0.00 5.03
1392 1510 4.980805 TCCTGCGCGAACACCACC 62.981 66.667 12.10 0.00 0.00 4.61
1419 1537 0.324943 CGGTGGAGTGGAAGTGGAAT 59.675 55.000 0.00 0.00 0.00 3.01
1776 1894 3.682858 GGTATTTGCTGCAAACGTAGAGA 59.317 43.478 28.11 5.77 36.13 3.10
1785 1903 2.347322 GGCGGGGTATTTGCTGCAA 61.347 57.895 11.69 11.69 0.00 4.08
1793 1911 2.269883 GTTGGTCGGCGGGGTATT 59.730 61.111 7.21 0.00 0.00 1.89
1842 1960 0.103937 GGTCATGCTCTTCCTCCTCG 59.896 60.000 0.00 0.00 0.00 4.63
1939 2057 3.565482 ACAGCTTGACACATTTACACCTG 59.435 43.478 0.00 0.00 0.00 4.00
1990 2113 6.701340 AGATAACATTCAGACAAGCACTGTA 58.299 36.000 0.00 0.00 38.84 2.74
1991 2114 5.555017 AGATAACATTCAGACAAGCACTGT 58.445 37.500 0.00 0.00 42.61 3.55
1992 2115 7.710044 AGATAGATAACATTCAGACAAGCACTG 59.290 37.037 0.00 0.00 36.80 3.66
2288 2696 1.578703 TCCCAGAGGTGCTTATAGGGA 59.421 52.381 0.00 0.00 41.33 4.20
2320 2728 3.417069 TGATTTCCCAAGATGTGACGT 57.583 42.857 0.00 0.00 0.00 4.34
2321 2729 3.940852 TGATGATTTCCCAAGATGTGACG 59.059 43.478 0.00 0.00 0.00 4.35
2322 2730 4.701651 TGTGATGATTTCCCAAGATGTGAC 59.298 41.667 0.00 0.00 0.00 3.67
2323 2731 4.920999 TGTGATGATTTCCCAAGATGTGA 58.079 39.130 0.00 0.00 0.00 3.58
2368 2783 2.266055 GTTCAGTGGGAGGAGGCG 59.734 66.667 0.00 0.00 0.00 5.52
2370 2785 0.037232 GTTCGTTCAGTGGGAGGAGG 60.037 60.000 0.00 0.00 0.00 4.30
2373 2788 1.726853 GATGTTCGTTCAGTGGGAGG 58.273 55.000 0.00 0.00 0.00 4.30
2405 2820 7.593644 GTGCTCGTGTTTTCCTGTATTTATTTT 59.406 33.333 0.00 0.00 0.00 1.82
2471 2888 6.000219 CAGATGGTTAGATTCCTTATGGTGG 59.000 44.000 0.00 0.00 34.23 4.61
2477 2894 9.507329 GCATAATTCAGATGGTTAGATTCCTTA 57.493 33.333 0.00 0.00 0.00 2.69
2481 2898 8.613060 TGAGCATAATTCAGATGGTTAGATTC 57.387 34.615 0.00 0.00 35.24 2.52
2497 2914 4.484537 ACAGAGCTGAACTGAGCATAAT 57.515 40.909 7.84 0.00 41.83 1.28
2528 2945 4.398319 GCTAGGAGGCTTGCCATTTTATA 58.602 43.478 14.54 0.00 0.00 0.98
2529 2946 3.225940 GCTAGGAGGCTTGCCATTTTAT 58.774 45.455 14.54 0.00 0.00 1.40
2551 2968 6.741992 TGGTTATGTTTTGATAGTGCAGAG 57.258 37.500 0.00 0.00 0.00 3.35
2553 2970 9.060347 AGATATGGTTATGTTTTGATAGTGCAG 57.940 33.333 0.00 0.00 0.00 4.41
2607 3024 1.067516 GGGATTGGTTCGGCATTGATG 59.932 52.381 0.00 0.00 0.00 3.07
2643 3060 2.926200 CACGTCTATTGCTCACCTCTTG 59.074 50.000 0.00 0.00 0.00 3.02
2655 3072 0.324943 AGCTTGGTGCCACGTCTATT 59.675 50.000 0.00 0.00 44.23 1.73
2662 3079 0.745845 ATGATCGAGCTTGGTGCCAC 60.746 55.000 0.90 0.00 44.23 5.01
2728 3145 3.625853 TGTGTTTGATGTCCTTCCAACA 58.374 40.909 0.00 0.00 31.13 3.33
2751 3168 0.251165 CACCCTTACCCCACACCTTG 60.251 60.000 0.00 0.00 0.00 3.61
2758 3175 1.688311 CGAGAGATCACCCTTACCCCA 60.688 57.143 0.00 0.00 0.00 4.96
2761 3178 0.030908 CGCGAGAGATCACCCTTACC 59.969 60.000 0.00 0.00 0.00 2.85
2769 3186 1.037579 ATGGACACCGCGAGAGATCA 61.038 55.000 8.23 0.00 0.00 2.92
2781 3198 5.527582 ACACAGTAAAAAGACAGATGGACAC 59.472 40.000 0.00 0.00 0.00 3.67
2785 3202 4.988540 TCGACACAGTAAAAAGACAGATGG 59.011 41.667 0.00 0.00 0.00 3.51
2791 3208 4.365723 TCACCTCGACACAGTAAAAAGAC 58.634 43.478 0.00 0.00 0.00 3.01
2855 3272 1.774631 ATAGGGTTAGGGGGCTGGC 60.775 63.158 0.00 0.00 0.00 4.85
2858 3275 0.193827 GGAGATAGGGTTAGGGGGCT 59.806 60.000 0.00 0.00 0.00 5.19
2860 3277 0.178870 GGGGAGATAGGGTTAGGGGG 60.179 65.000 0.00 0.00 0.00 5.40
2861 3278 0.875311 AGGGGAGATAGGGTTAGGGG 59.125 60.000 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.