Multiple sequence alignment - TraesCS5D01G228900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G228900 chr5D 100.000 3179 0 0 1 3179 336222123 336225301 0.000000e+00 5871.0
1 TraesCS5D01G228900 chr5B 92.382 2481 122 21 1 2432 394265407 394267869 0.000000e+00 3472.0
2 TraesCS5D01G228900 chr5B 83.842 557 39 31 2482 3026 394268003 394268520 1.710000e-132 483.0
3 TraesCS5D01G228900 chr5A 93.608 2284 83 17 179 2431 437291169 437293420 0.000000e+00 3350.0
4 TraesCS5D01G228900 chr5A 93.964 497 27 3 2248 2743 365138374 365137880 0.000000e+00 749.0
5 TraesCS5D01G228900 chr5A 87.368 475 35 14 2515 2968 437293566 437294036 3.630000e-144 521.0
6 TraesCS5D01G228900 chr5A 90.789 152 9 3 1 149 437290617 437290766 6.960000e-47 198.0
7 TraesCS5D01G228900 chr5A 90.090 111 7 4 2870 2979 691735532 691735425 1.190000e-29 141.0
8 TraesCS5D01G228900 chr5A 89.189 111 8 4 2870 2979 691794968 691794861 5.530000e-28 135.0
9 TraesCS5D01G228900 chr5A 87.179 117 11 4 2864 2979 692392351 692392464 2.570000e-26 130.0
10 TraesCS5D01G228900 chr5A 93.617 47 0 3 2135 2181 365138457 365138414 2.050000e-07 67.6
11 TraesCS5D01G228900 chr4B 87.389 563 40 19 2182 2743 228459889 228459357 4.510000e-173 617.0
12 TraesCS5D01G228900 chr4B 88.235 119 8 6 2870 2984 654091652 654091536 1.540000e-28 137.0
13 TraesCS5D01G228900 chr2A 77.968 876 183 10 1052 1922 598162340 598161470 1.000000e-149 540.0
14 TraesCS5D01G228900 chr6B 91.159 328 22 7 2419 2743 247376046 247375723 3.760000e-119 438.0
15 TraesCS5D01G228900 chr2B 89.655 116 8 4 2874 2989 800127524 800127635 9.190000e-31 145.0
16 TraesCS5D01G228900 chr4D 92.857 98 3 4 2870 2966 507479801 507479895 4.280000e-29 139.0
17 TraesCS5D01G228900 chr3D 89.720 107 8 3 2886 2991 524218538 524218434 1.990000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G228900 chr5D 336222123 336225301 3178 False 5871.000000 5871 100.000000 1 3179 1 chr5D.!!$F1 3178
1 TraesCS5D01G228900 chr5B 394265407 394268520 3113 False 1977.500000 3472 88.112000 1 3026 2 chr5B.!!$F1 3025
2 TraesCS5D01G228900 chr5A 437290617 437294036 3419 False 1356.333333 3350 90.588333 1 2968 3 chr5A.!!$F2 2967
3 TraesCS5D01G228900 chr5A 365137880 365138457 577 True 408.300000 749 93.790500 2135 2743 2 chr5A.!!$R3 608
4 TraesCS5D01G228900 chr4B 228459357 228459889 532 True 617.000000 617 87.389000 2182 2743 1 chr4B.!!$R1 561
5 TraesCS5D01G228900 chr2A 598161470 598162340 870 True 540.000000 540 77.968000 1052 1922 1 chr2A.!!$R1 870

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
988 1393 1.032657 TCCTCTCTTCTTCCTCGCGG 61.033 60.0 6.13 0.0 0.0 6.46 F
1776 2181 0.606401 CAGCCTCCACAATCCACGTT 60.606 55.0 0.00 0.0 0.0 3.99 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1965 2373 0.029567 CGACATCCTCGAGCAGGTAC 59.97 60.0 6.99 0.0 46.14 3.34 R
3075 3618 0.040351 CAGAGACCCAGTCCCAGAGA 59.96 60.0 0.00 0.0 32.18 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.966762 CCGGCTCTGGTTTGCATTT 59.033 52.632 0.00 0.00 0.00 2.32
150 466 5.824904 AAAATGTGTGCTTGCTATCTAGG 57.175 39.130 0.00 0.00 0.00 3.02
156 472 5.163509 TGTGTGCTTGCTATCTAGGAGTAAG 60.164 44.000 14.72 14.72 39.02 2.34
295 675 4.594920 TGATTCTAGGCCAATCCTAAGGAG 59.405 45.833 5.01 0.00 46.38 3.69
306 686 4.946478 ATCCTAAGGAGTATGCAGTGTC 57.054 45.455 0.00 0.00 34.05 3.67
311 691 5.240623 CCTAAGGAGTATGCAGTGTCTCTAG 59.759 48.000 0.00 0.00 0.00 2.43
329 709 6.312426 GTCTCTAGTTCAAGTGGTTCATGATG 59.688 42.308 0.00 0.00 0.00 3.07
330 710 6.014242 TCTCTAGTTCAAGTGGTTCATGATGT 60.014 38.462 0.00 0.00 0.00 3.06
333 713 5.132502 AGTTCAAGTGGTTCATGATGTTCA 58.867 37.500 0.00 0.00 0.00 3.18
334 714 5.771666 AGTTCAAGTGGTTCATGATGTTCAT 59.228 36.000 0.00 0.00 37.65 2.57
402 784 3.750130 AGCTCATGTGTTTGCTACTTCAG 59.250 43.478 0.00 0.00 33.64 3.02
463 851 4.694982 TCAATATGCGTTTGCTTCTTCAGA 59.305 37.500 0.00 0.00 43.34 3.27
479 869 9.224267 GCTTCTTCAGATCTTAATAATGCCATA 57.776 33.333 0.00 0.00 0.00 2.74
578 968 1.035923 TGATGTCAAAAGCCGGCAAA 58.964 45.000 31.54 1.61 0.00 3.68
706 1096 2.612212 ACGTAAGCACCACAAAGACTTG 59.388 45.455 0.00 0.00 45.62 3.16
728 1118 8.540388 ACTTGACCAATGTAGTTACATAGATGT 58.460 33.333 5.28 0.08 45.55 3.06
757 1147 5.513376 TGAATATGCTCGTTGATGCATTTC 58.487 37.500 0.00 9.63 46.29 2.17
761 1151 5.700722 ATGCTCGTTGATGCATTTCATAT 57.299 34.783 0.00 0.00 46.29 1.78
864 1254 4.202030 CCTCTCGACGTAGCTTAGGATTTT 60.202 45.833 0.00 0.00 0.00 1.82
865 1255 5.320549 TCTCGACGTAGCTTAGGATTTTT 57.679 39.130 0.00 0.00 0.00 1.94
919 1324 1.210204 AATCTCCCTTGGCTGGCTGA 61.210 55.000 2.00 0.00 0.00 4.26
988 1393 1.032657 TCCTCTCTTCTTCCTCGCGG 61.033 60.000 6.13 0.00 0.00 6.46
1092 1497 2.223618 GCGCCTCGAGATAACTTTCTCT 60.224 50.000 15.71 0.00 40.03 3.10
1230 1635 1.979469 CAGTTCGACTCTTACGTGCTG 59.021 52.381 0.00 0.00 0.00 4.41
1320 1725 1.595382 GTCGATTCCCCGCATCCTG 60.595 63.158 0.00 0.00 0.00 3.86
1375 1780 4.203076 CGAAGTACTCCCGCGGGG 62.203 72.222 42.36 33.07 46.11 5.73
1551 1956 1.675801 CACTGAGGAGCCTGAGCAA 59.324 57.895 2.74 0.00 43.56 3.91
1776 2181 0.606401 CAGCCTCCACAATCCACGTT 60.606 55.000 0.00 0.00 0.00 3.99
1897 2302 2.579738 GCCCGTCAGACTTCTCCC 59.420 66.667 0.00 0.00 0.00 4.30
1949 2354 2.828095 CAAATCATGGGCGGCCGA 60.828 61.111 33.48 15.91 0.00 5.54
2294 2722 7.507733 TCCCGTGTTACTGCTTTTATTTTTA 57.492 32.000 0.00 0.00 0.00 1.52
2311 2739 3.342377 TTTATGTCATCGTTCCTGCCA 57.658 42.857 0.00 0.00 0.00 4.92
2381 2816 8.983702 AAGAGTCTATCTAGGTTGGTAGTAAG 57.016 38.462 0.00 0.00 37.23 2.34
2458 2932 5.841810 TGTTCAATCAAATGTTGGAGTTCC 58.158 37.500 0.00 0.00 0.00 3.62
2459 2933 5.362143 TGTTCAATCAAATGTTGGAGTTCCA 59.638 36.000 0.00 0.00 45.94 3.53
2468 2942 7.232330 TCAAATGTTGGAGTTCCATGTTAATCA 59.768 33.333 0.93 0.00 46.97 2.57
2505 3026 6.463360 TGTCAGTCTTCTGCATACATTGTAA 58.537 36.000 0.00 0.00 41.10 2.41
2508 3029 8.543774 GTCAGTCTTCTGCATACATTGTAATAC 58.456 37.037 0.00 0.00 41.10 1.89
2509 3030 8.478066 TCAGTCTTCTGCATACATTGTAATACT 58.522 33.333 0.00 0.00 41.10 2.12
2510 3031 8.546244 CAGTCTTCTGCATACATTGTAATACTG 58.454 37.037 0.00 0.73 34.79 2.74
2540 3061 4.215185 GTCCAGAAGAGAAGCCAAAGAAAG 59.785 45.833 0.00 0.00 0.00 2.62
2561 3082 5.418310 AGTTGTACTGTGGTCAATTTTCG 57.582 39.130 0.00 0.00 0.00 3.46
2753 3276 2.005370 AGAACCCACCGAACTGAGTA 57.995 50.000 0.00 0.00 0.00 2.59
2763 3286 5.067936 CCACCGAACTGAGTATATCACTTCT 59.932 44.000 0.00 0.00 37.72 2.85
2795 3326 8.936070 ATTAAAAACTTTAGTTGGTCAACACC 57.064 30.769 15.12 0.00 43.47 4.16
2816 3353 9.601217 AACACCTGAACTGAAATATAGTACATC 57.399 33.333 0.00 0.00 0.00 3.06
2831 3368 4.799678 AGTACATCGATACATAGCACTGC 58.200 43.478 0.00 0.00 0.00 4.40
2832 3369 4.520874 AGTACATCGATACATAGCACTGCT 59.479 41.667 8.95 8.95 43.41 4.24
2835 3372 3.097877 TCGATACATAGCACTGCTTGG 57.902 47.619 9.30 4.52 40.44 3.61
2848 3385 3.299503 ACTGCTTGGTTTCCAGTGAAAT 58.700 40.909 0.00 0.00 42.20 2.17
2855 3392 6.516527 GCTTGGTTTCCAGTGAAATGATTACA 60.517 38.462 0.00 0.00 42.20 2.41
2858 3395 5.105756 GGTTTCCAGTGAAATGATTACAGGG 60.106 44.000 0.00 0.00 42.20 4.45
2859 3396 5.512942 TTCCAGTGAAATGATTACAGGGA 57.487 39.130 0.00 0.00 0.00 4.20
2860 3397 5.715439 TCCAGTGAAATGATTACAGGGAT 57.285 39.130 0.00 0.00 0.00 3.85
2861 3398 5.439721 TCCAGTGAAATGATTACAGGGATG 58.560 41.667 0.00 0.00 0.00 3.51
2862 3399 4.581824 CCAGTGAAATGATTACAGGGATGG 59.418 45.833 0.00 0.00 0.00 3.51
2864 3401 6.066690 CAGTGAAATGATTACAGGGATGGAT 58.933 40.000 0.00 0.00 0.00 3.41
2866 3403 7.389884 CAGTGAAATGATTACAGGGATGGATAG 59.610 40.741 0.00 0.00 0.00 2.08
2867 3404 6.656693 GTGAAATGATTACAGGGATGGATAGG 59.343 42.308 0.00 0.00 0.00 2.57
2868 3405 4.851639 ATGATTACAGGGATGGATAGGC 57.148 45.455 0.00 0.00 0.00 3.93
2870 3407 3.584406 TGATTACAGGGATGGATAGGCTG 59.416 47.826 0.00 0.00 0.00 4.85
2871 3408 2.795291 TACAGGGATGGATAGGCTGT 57.205 50.000 0.00 0.00 0.00 4.40
2882 3424 6.772716 GGATGGATAGGCTGTTCAAAGAAATA 59.227 38.462 0.00 0.00 0.00 1.40
2884 3426 5.584649 TGGATAGGCTGTTCAAAGAAATACG 59.415 40.000 0.00 0.00 0.00 3.06
2890 3432 4.379394 GCTGTTCAAAGAAATACGGCATCA 60.379 41.667 0.00 0.00 41.40 3.07
2893 3435 6.686630 TGTTCAAAGAAATACGGCATCAAAT 58.313 32.000 0.00 0.00 0.00 2.32
2931 3473 2.367894 GGTAGATTAGTACCCTGCCACC 59.632 54.545 0.00 0.00 37.12 4.61
2968 3510 2.215451 ATTCCCGGCTGGTGCATCTT 62.215 55.000 11.58 0.00 41.91 2.40
2969 3511 1.558167 TTCCCGGCTGGTGCATCTTA 61.558 55.000 11.58 0.00 41.91 2.10
2972 3514 0.676466 CCGGCTGGTGCATCTTACAA 60.676 55.000 2.29 0.00 41.91 2.41
3008 3551 9.573166 TTCATTTCCCTTTGGACATATATACAG 57.427 33.333 0.00 0.00 41.57 2.74
3037 3580 8.608844 ACTTAATCAAATTTCGTTCTCTCACT 57.391 30.769 0.00 0.00 0.00 3.41
3038 3581 8.499162 ACTTAATCAAATTTCGTTCTCTCACTG 58.501 33.333 0.00 0.00 0.00 3.66
3039 3582 6.867662 AATCAAATTTCGTTCTCTCACTGT 57.132 33.333 0.00 0.00 0.00 3.55
3040 3583 7.962964 AATCAAATTTCGTTCTCTCACTGTA 57.037 32.000 0.00 0.00 0.00 2.74
3041 3584 7.588143 ATCAAATTTCGTTCTCTCACTGTAG 57.412 36.000 0.00 0.00 0.00 2.74
3042 3585 6.745116 TCAAATTTCGTTCTCTCACTGTAGA 58.255 36.000 0.00 0.00 0.00 2.59
3043 3586 7.207383 TCAAATTTCGTTCTCTCACTGTAGAA 58.793 34.615 0.00 0.00 0.00 2.10
3044 3587 7.382488 TCAAATTTCGTTCTCTCACTGTAGAAG 59.618 37.037 0.00 0.00 32.56 2.85
3045 3588 5.769484 TTTCGTTCTCTCACTGTAGAAGT 57.231 39.130 0.00 0.00 40.93 3.01
3046 3589 5.769484 TTCGTTCTCTCACTGTAGAAGTT 57.231 39.130 0.00 0.00 36.83 2.66
3047 3590 5.359716 TCGTTCTCTCACTGTAGAAGTTC 57.640 43.478 0.00 0.00 36.83 3.01
3048 3591 5.064558 TCGTTCTCTCACTGTAGAAGTTCT 58.935 41.667 10.87 10.87 36.83 3.01
3049 3592 6.228995 TCGTTCTCTCACTGTAGAAGTTCTA 58.771 40.000 8.59 8.59 36.83 2.10
3050 3593 6.709397 TCGTTCTCTCACTGTAGAAGTTCTAA 59.291 38.462 14.20 4.74 36.83 2.10
3051 3594 7.228108 TCGTTCTCTCACTGTAGAAGTTCTAAA 59.772 37.037 14.20 8.37 36.83 1.85
3052 3595 7.861372 CGTTCTCTCACTGTAGAAGTTCTAAAA 59.139 37.037 14.20 5.43 36.83 1.52
3053 3596 9.187455 GTTCTCTCACTGTAGAAGTTCTAAAAG 57.813 37.037 14.20 15.81 36.83 2.27
3054 3597 7.887381 TCTCTCACTGTAGAAGTTCTAAAAGG 58.113 38.462 14.20 4.54 36.83 3.11
3055 3598 6.456501 TCTCACTGTAGAAGTTCTAAAAGGC 58.543 40.000 14.20 2.68 36.83 4.35
3056 3599 6.267928 TCTCACTGTAGAAGTTCTAAAAGGCT 59.732 38.462 14.20 0.00 36.83 4.58
3057 3600 6.456501 TCACTGTAGAAGTTCTAAAAGGCTC 58.543 40.000 14.20 1.30 36.83 4.70
3058 3601 5.346281 CACTGTAGAAGTTCTAAAAGGCTCG 59.654 44.000 14.20 0.00 36.83 5.03
3059 3602 5.010820 ACTGTAGAAGTTCTAAAAGGCTCGT 59.989 40.000 14.20 0.00 34.57 4.18
3060 3603 5.467705 TGTAGAAGTTCTAAAAGGCTCGTC 58.532 41.667 14.20 0.00 29.58 4.20
3061 3604 4.602340 AGAAGTTCTAAAAGGCTCGTCA 57.398 40.909 2.75 0.00 0.00 4.35
3062 3605 5.153950 AGAAGTTCTAAAAGGCTCGTCAT 57.846 39.130 2.75 0.00 0.00 3.06
3063 3606 5.552178 AGAAGTTCTAAAAGGCTCGTCATT 58.448 37.500 2.75 0.00 0.00 2.57
3064 3607 5.998363 AGAAGTTCTAAAAGGCTCGTCATTT 59.002 36.000 2.75 0.00 0.00 2.32
3065 3608 5.613358 AGTTCTAAAAGGCTCGTCATTTG 57.387 39.130 0.00 0.00 0.00 2.32
3066 3609 4.455877 AGTTCTAAAAGGCTCGTCATTTGG 59.544 41.667 0.00 0.00 0.00 3.28
3067 3610 3.343617 TCTAAAAGGCTCGTCATTTGGG 58.656 45.455 0.00 0.00 0.00 4.12
3068 3611 2.286365 AAAAGGCTCGTCATTTGGGA 57.714 45.000 0.00 0.00 0.00 4.37
3069 3612 1.534729 AAAGGCTCGTCATTTGGGAC 58.465 50.000 0.00 0.00 34.42 4.46
3070 3613 0.693049 AAGGCTCGTCATTTGGGACT 59.307 50.000 0.00 0.00 35.63 3.85
3071 3614 0.693049 AGGCTCGTCATTTGGGACTT 59.307 50.000 0.00 0.00 35.63 3.01
3072 3615 1.073923 AGGCTCGTCATTTGGGACTTT 59.926 47.619 0.00 0.00 35.63 2.66
3073 3616 1.200020 GGCTCGTCATTTGGGACTTTG 59.800 52.381 0.00 0.00 35.63 2.77
3074 3617 1.880027 GCTCGTCATTTGGGACTTTGT 59.120 47.619 0.00 0.00 35.63 2.83
3075 3618 2.293399 GCTCGTCATTTGGGACTTTGTT 59.707 45.455 0.00 0.00 35.63 2.83
3076 3619 3.609409 GCTCGTCATTTGGGACTTTGTTC 60.609 47.826 0.00 0.00 35.63 3.18
3077 3620 3.815401 CTCGTCATTTGGGACTTTGTTCT 59.185 43.478 0.00 0.00 35.63 3.01
3078 3621 3.813166 TCGTCATTTGGGACTTTGTTCTC 59.187 43.478 0.00 0.00 35.63 2.87
3079 3622 3.815401 CGTCATTTGGGACTTTGTTCTCT 59.185 43.478 0.00 0.00 35.63 3.10
3080 3623 4.319766 CGTCATTTGGGACTTTGTTCTCTG 60.320 45.833 0.00 0.00 35.63 3.35
3081 3624 4.022849 GTCATTTGGGACTTTGTTCTCTGG 60.023 45.833 0.00 0.00 34.92 3.86
3082 3625 2.656947 TTGGGACTTTGTTCTCTGGG 57.343 50.000 0.00 0.00 0.00 4.45
3083 3626 1.814429 TGGGACTTTGTTCTCTGGGA 58.186 50.000 0.00 0.00 0.00 4.37
3084 3627 1.420138 TGGGACTTTGTTCTCTGGGAC 59.580 52.381 0.00 0.00 0.00 4.46
3085 3628 1.700186 GGGACTTTGTTCTCTGGGACT 59.300 52.381 0.00 0.00 0.00 3.85
3086 3629 2.551071 GGGACTTTGTTCTCTGGGACTG 60.551 54.545 0.00 0.00 0.00 3.51
3087 3630 2.551071 GGACTTTGTTCTCTGGGACTGG 60.551 54.545 0.00 0.00 0.00 4.00
3088 3631 1.421646 ACTTTGTTCTCTGGGACTGGG 59.578 52.381 0.00 0.00 0.00 4.45
3089 3632 1.421646 CTTTGTTCTCTGGGACTGGGT 59.578 52.381 0.00 0.00 0.00 4.51
3090 3633 1.056660 TTGTTCTCTGGGACTGGGTC 58.943 55.000 0.00 0.00 0.00 4.46
3091 3634 0.191064 TGTTCTCTGGGACTGGGTCT 59.809 55.000 0.00 0.00 32.47 3.85
3092 3635 0.899019 GTTCTCTGGGACTGGGTCTC 59.101 60.000 0.00 0.00 32.92 3.36
3093 3636 0.787084 TTCTCTGGGACTGGGTCTCT 59.213 55.000 0.00 0.00 33.58 3.10
3094 3637 0.040351 TCTCTGGGACTGGGTCTCTG 59.960 60.000 0.00 0.00 33.58 3.35
3095 3638 0.252012 CTCTGGGACTGGGTCTCTGT 60.252 60.000 0.00 0.00 33.58 3.41
3096 3639 1.006043 CTCTGGGACTGGGTCTCTGTA 59.994 57.143 0.00 0.00 33.58 2.74
3097 3640 1.006043 TCTGGGACTGGGTCTCTGTAG 59.994 57.143 0.00 0.00 33.58 2.74
3098 3641 1.006043 CTGGGACTGGGTCTCTGTAGA 59.994 57.143 0.00 0.00 33.58 2.59
3111 3654 5.808366 TCTCTGTAGACAACTTGACCATT 57.192 39.130 0.00 0.00 0.00 3.16
3112 3655 5.784177 TCTCTGTAGACAACTTGACCATTC 58.216 41.667 0.00 0.00 0.00 2.67
3113 3656 5.304357 TCTCTGTAGACAACTTGACCATTCA 59.696 40.000 0.00 0.00 0.00 2.57
3114 3657 6.014242 TCTCTGTAGACAACTTGACCATTCAT 60.014 38.462 0.00 0.00 0.00 2.57
3115 3658 7.178451 TCTCTGTAGACAACTTGACCATTCATA 59.822 37.037 0.00 0.00 0.00 2.15
3116 3659 7.097192 TCTGTAGACAACTTGACCATTCATAC 58.903 38.462 0.00 0.00 0.00 2.39
3117 3660 7.004555 TGTAGACAACTTGACCATTCATACT 57.995 36.000 0.00 0.00 0.00 2.12
3118 3661 7.450074 TGTAGACAACTTGACCATTCATACTT 58.550 34.615 0.00 0.00 0.00 2.24
3119 3662 6.808008 AGACAACTTGACCATTCATACTTG 57.192 37.500 0.00 0.00 0.00 3.16
3120 3663 6.299141 AGACAACTTGACCATTCATACTTGT 58.701 36.000 0.00 0.00 30.88 3.16
3121 3664 6.205464 AGACAACTTGACCATTCATACTTGTG 59.795 38.462 0.00 0.00 29.48 3.33
3122 3665 5.156355 CAACTTGACCATTCATACTTGTGC 58.844 41.667 0.00 0.00 0.00 4.57
3123 3666 4.397420 ACTTGACCATTCATACTTGTGCA 58.603 39.130 0.00 0.00 0.00 4.57
3124 3667 4.216257 ACTTGACCATTCATACTTGTGCAC 59.784 41.667 10.75 10.75 0.00 4.57
3125 3668 2.741517 TGACCATTCATACTTGTGCACG 59.258 45.455 13.13 0.65 0.00 5.34
3126 3669 2.083774 ACCATTCATACTTGTGCACGG 58.916 47.619 13.13 10.15 0.00 4.94
3127 3670 2.290008 ACCATTCATACTTGTGCACGGA 60.290 45.455 13.13 2.17 0.00 4.69
3128 3671 2.746904 CCATTCATACTTGTGCACGGAA 59.253 45.455 13.13 9.01 0.00 4.30
3129 3672 3.378112 CCATTCATACTTGTGCACGGAAT 59.622 43.478 13.13 10.78 0.00 3.01
3130 3673 4.142403 CCATTCATACTTGTGCACGGAATT 60.142 41.667 13.13 0.00 0.00 2.17
3131 3674 5.065859 CCATTCATACTTGTGCACGGAATTA 59.934 40.000 13.13 0.98 0.00 1.40
3132 3675 5.539582 TTCATACTTGTGCACGGAATTAC 57.460 39.130 13.13 0.00 0.00 1.89
3133 3676 3.936453 TCATACTTGTGCACGGAATTACC 59.064 43.478 13.13 0.00 0.00 2.85
3134 3677 2.264005 ACTTGTGCACGGAATTACCA 57.736 45.000 13.13 0.00 38.90 3.25
3135 3678 2.577700 ACTTGTGCACGGAATTACCAA 58.422 42.857 13.13 0.00 38.90 3.67
3136 3679 3.153919 ACTTGTGCACGGAATTACCAAT 58.846 40.909 13.13 0.00 38.90 3.16
3137 3680 3.190535 ACTTGTGCACGGAATTACCAATC 59.809 43.478 13.13 0.00 38.90 2.67
3138 3681 2.088423 TGTGCACGGAATTACCAATCC 58.912 47.619 13.13 0.00 38.90 3.01
3139 3682 2.290641 TGTGCACGGAATTACCAATCCT 60.291 45.455 13.13 0.00 38.90 3.24
3140 3683 2.752903 GTGCACGGAATTACCAATCCTT 59.247 45.455 0.00 0.00 38.90 3.36
3141 3684 3.942748 GTGCACGGAATTACCAATCCTTA 59.057 43.478 0.00 0.00 38.90 2.69
3142 3685 4.396790 GTGCACGGAATTACCAATCCTTAA 59.603 41.667 0.00 0.00 38.90 1.85
3143 3686 4.638421 TGCACGGAATTACCAATCCTTAAG 59.362 41.667 0.00 0.00 38.90 1.85
3144 3687 4.638865 GCACGGAATTACCAATCCTTAAGT 59.361 41.667 0.97 0.00 38.90 2.24
3145 3688 5.448632 GCACGGAATTACCAATCCTTAAGTG 60.449 44.000 0.97 0.00 38.90 3.16
3146 3689 4.638865 ACGGAATTACCAATCCTTAAGTGC 59.361 41.667 0.97 0.00 38.90 4.40
3147 3690 4.638421 CGGAATTACCAATCCTTAAGTGCA 59.362 41.667 0.97 0.00 38.90 4.57
3148 3691 5.124776 CGGAATTACCAATCCTTAAGTGCAA 59.875 40.000 0.97 0.00 38.90 4.08
3149 3692 6.183360 CGGAATTACCAATCCTTAAGTGCAAT 60.183 38.462 0.97 0.00 38.90 3.56
3150 3693 7.555965 GGAATTACCAATCCTTAAGTGCAATT 58.444 34.615 4.23 4.23 38.79 2.32
3151 3694 7.706607 GGAATTACCAATCCTTAAGTGCAATTC 59.293 37.037 1.02 10.07 38.79 2.17
3152 3695 7.961326 ATTACCAATCCTTAAGTGCAATTCT 57.039 32.000 1.02 0.00 0.00 2.40
3153 3696 5.649782 ACCAATCCTTAAGTGCAATTCTG 57.350 39.130 1.02 0.00 0.00 3.02
3154 3697 5.079643 ACCAATCCTTAAGTGCAATTCTGT 58.920 37.500 1.02 0.00 0.00 3.41
3155 3698 5.183904 ACCAATCCTTAAGTGCAATTCTGTC 59.816 40.000 1.02 0.00 0.00 3.51
3156 3699 5.393461 CCAATCCTTAAGTGCAATTCTGTCC 60.393 44.000 1.02 0.00 0.00 4.02
3157 3700 3.334691 TCCTTAAGTGCAATTCTGTCCG 58.665 45.455 1.02 0.00 0.00 4.79
3158 3701 2.420022 CCTTAAGTGCAATTCTGTCCGG 59.580 50.000 1.02 0.00 0.00 5.14
3159 3702 3.334691 CTTAAGTGCAATTCTGTCCGGA 58.665 45.455 1.02 0.00 0.00 5.14
3160 3703 1.523758 AAGTGCAATTCTGTCCGGAC 58.476 50.000 28.17 28.17 0.00 4.79
3161 3704 0.396435 AGTGCAATTCTGTCCGGACA 59.604 50.000 34.13 34.13 39.32 4.02
3162 3705 0.517316 GTGCAATTCTGTCCGGACAC 59.483 55.000 33.23 21.80 36.21 3.67
3163 3706 0.948623 TGCAATTCTGTCCGGACACG 60.949 55.000 33.23 26.15 36.21 4.49
3164 3707 0.669318 GCAATTCTGTCCGGACACGA 60.669 55.000 33.23 27.80 44.60 4.35
3165 3708 1.068474 CAATTCTGTCCGGACACGAC 58.932 55.000 33.23 8.40 44.60 4.34
3166 3709 0.966920 AATTCTGTCCGGACACGACT 59.033 50.000 33.23 22.77 44.60 4.18
3167 3710 0.526662 ATTCTGTCCGGACACGACTC 59.473 55.000 33.23 6.06 44.60 3.36
3168 3711 0.820482 TTCTGTCCGGACACGACTCA 60.820 55.000 33.23 15.89 44.60 3.41
3169 3712 0.608308 TCTGTCCGGACACGACTCAT 60.608 55.000 33.23 0.00 44.60 2.90
3170 3713 0.243907 CTGTCCGGACACGACTCATT 59.756 55.000 33.23 0.00 44.60 2.57
3171 3714 0.677288 TGTCCGGACACGACTCATTT 59.323 50.000 33.23 0.00 44.60 2.32
3172 3715 1.069513 TGTCCGGACACGACTCATTTT 59.930 47.619 33.23 0.00 44.60 1.82
3173 3716 1.725164 GTCCGGACACGACTCATTTTC 59.275 52.381 29.75 0.00 44.60 2.29
3174 3717 1.341852 TCCGGACACGACTCATTTTCA 59.658 47.619 0.00 0.00 44.60 2.69
3175 3718 2.028476 TCCGGACACGACTCATTTTCAT 60.028 45.455 0.00 0.00 44.60 2.57
3176 3719 2.742053 CCGGACACGACTCATTTTCATT 59.258 45.455 0.00 0.00 44.60 2.57
3177 3720 3.181520 CCGGACACGACTCATTTTCATTC 60.182 47.826 0.00 0.00 44.60 2.67
3178 3721 3.431912 CGGACACGACTCATTTTCATTCA 59.568 43.478 0.00 0.00 44.60 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 3.508744 AATAAATGCAAACCAGAGCCG 57.491 42.857 0.00 0.00 0.00 5.52
59 60 5.173131 GTGTTATAATTGCCACTAAATGCGC 59.827 40.000 0.00 0.00 0.00 6.09
129 133 5.102953 TCCTAGATAGCAAGCACACATTT 57.897 39.130 0.00 0.00 0.00 2.32
130 134 4.163078 ACTCCTAGATAGCAAGCACACATT 59.837 41.667 0.00 0.00 0.00 2.71
142 146 8.693120 TGTCAACCATACTTACTCCTAGATAG 57.307 38.462 0.00 0.00 0.00 2.08
150 466 6.213677 TGCGATATGTCAACCATACTTACTC 58.786 40.000 0.00 0.00 38.83 2.59
156 472 3.748048 AGCATGCGATATGTCAACCATAC 59.252 43.478 13.01 0.00 38.83 2.39
295 675 5.574830 CACTTGAACTAGAGACACTGCATAC 59.425 44.000 0.00 0.00 0.00 2.39
306 686 6.169094 ACATCATGAACCACTTGAACTAGAG 58.831 40.000 0.00 0.00 36.51 2.43
311 691 5.437289 TGAACATCATGAACCACTTGAAC 57.563 39.130 0.00 0.00 36.51 3.18
329 709 9.793252 AAGCAATATGTTTAGACAATCATGAAC 57.207 29.630 0.00 0.00 39.66 3.18
338 718 9.461312 AGATGGTTAAAGCAATATGTTTAGACA 57.539 29.630 0.00 0.00 40.71 3.41
479 869 7.796054 AGTGACTCAAGTAATATGGCAGTAAT 58.204 34.615 0.00 0.00 0.00 1.89
728 1118 7.479150 TGCATCAACGAGCATATTCAAATTTA 58.521 30.769 0.00 0.00 35.51 1.40
745 1135 9.362539 AGAAACAAGAATATGAAATGCATCAAC 57.637 29.630 0.00 0.00 38.44 3.18
864 1254 5.368230 AGGGAAAGGGAAATTGCAGTAAAAA 59.632 36.000 0.00 0.00 0.00 1.94
865 1255 4.904853 AGGGAAAGGGAAATTGCAGTAAAA 59.095 37.500 0.00 0.00 0.00 1.52
919 1324 2.307098 ACAAGCCAAGTAGCAGAGGAAT 59.693 45.455 0.00 0.00 34.23 3.01
988 1393 1.605710 CATTTCCATCTGATCGGGTGC 59.394 52.381 9.49 0.00 0.00 5.01
1092 1497 3.345808 GCAAAGACAGGCGCGTCA 61.346 61.111 15.58 0.00 38.43 4.35
1230 1635 0.456995 CAAAGAGGCTCGACTCCGAC 60.457 60.000 9.22 0.00 40.30 4.79
1375 1780 3.202706 GCCGGGGAAGATGAACGC 61.203 66.667 2.18 0.00 0.00 4.84
1536 1941 2.596851 GGGTTGCTCAGGCTCCTCA 61.597 63.158 0.00 0.00 39.59 3.86
1551 1956 2.994995 TCGAGCGTCACCATGGGT 60.995 61.111 18.09 0.00 35.62 4.51
1767 2172 0.822164 CCTCGGGAGTAACGTGGATT 59.178 55.000 0.00 0.00 45.05 3.01
1897 2302 1.874019 CGAAGATGGTGACGGCGAG 60.874 63.158 16.62 0.00 0.00 5.03
1949 2354 1.753078 TACGAGCAGACCTCCGCAT 60.753 57.895 0.00 0.00 37.27 4.73
1965 2373 0.029567 CGACATCCTCGAGCAGGTAC 59.970 60.000 6.99 0.00 46.14 3.34
2294 2722 2.198827 TTTGGCAGGAACGATGACAT 57.801 45.000 0.00 0.00 35.08 3.06
2311 2739 5.130145 AGCAGACCATCTAGAGCACTTATTT 59.870 40.000 0.00 0.00 0.00 1.40
2381 2816 4.527564 GCATTGGCGACAGACATAAATAC 58.472 43.478 0.00 0.00 44.54 1.89
2459 2933 9.631257 TGACAAATAGATGGACATGATTAACAT 57.369 29.630 0.00 0.00 40.17 2.71
2468 2942 7.046652 CAGAAGACTGACAAATAGATGGACAT 58.953 38.462 0.00 0.00 46.03 3.06
2476 2993 7.783090 ATGTATGCAGAAGACTGACAAATAG 57.217 36.000 0.00 0.00 46.03 1.73
2479 2996 5.764686 ACAATGTATGCAGAAGACTGACAAA 59.235 36.000 0.00 0.00 46.03 2.83
2505 3026 7.930865 GCTTCTCTTCTGGACAATATTCAGTAT 59.069 37.037 3.37 0.00 0.00 2.12
2508 3029 5.526846 GGCTTCTCTTCTGGACAATATTCAG 59.473 44.000 0.00 0.00 0.00 3.02
2509 3030 5.045651 TGGCTTCTCTTCTGGACAATATTCA 60.046 40.000 0.00 0.00 0.00 2.57
2510 3031 5.431765 TGGCTTCTCTTCTGGACAATATTC 58.568 41.667 0.00 0.00 0.00 1.75
2540 3061 3.972502 GCGAAAATTGACCACAGTACAAC 59.027 43.478 0.00 0.00 0.00 3.32
2561 3082 3.084786 AGCAGGAACCAACTAATTCAGC 58.915 45.455 0.00 0.00 0.00 4.26
2773 3296 6.209788 TCAGGTGTTGACCAACTAAAGTTTTT 59.790 34.615 13.26 0.00 45.98 1.94
2778 3301 4.881850 AGTTCAGGTGTTGACCAACTAAAG 59.118 41.667 13.26 3.06 45.98 1.85
2779 3302 4.638421 CAGTTCAGGTGTTGACCAACTAAA 59.362 41.667 13.26 0.12 45.98 1.85
2816 3353 2.826428 ACCAAGCAGTGCTATGTATCG 58.174 47.619 20.09 8.48 38.25 2.92
2831 3368 6.980593 TGTAATCATTTCACTGGAAACCAAG 58.019 36.000 0.00 0.00 45.22 3.61
2832 3369 6.015519 CCTGTAATCATTTCACTGGAAACCAA 60.016 38.462 0.00 0.00 45.22 3.67
2835 3372 5.710099 TCCCTGTAATCATTTCACTGGAAAC 59.290 40.000 0.00 0.00 45.22 2.78
2848 3385 3.584406 CAGCCTATCCATCCCTGTAATCA 59.416 47.826 0.00 0.00 0.00 2.57
2855 3392 2.196742 TGAACAGCCTATCCATCCCT 57.803 50.000 0.00 0.00 0.00 4.20
2858 3395 6.705863 ATTTCTTTGAACAGCCTATCCATC 57.294 37.500 0.00 0.00 0.00 3.51
2859 3396 6.260936 CGTATTTCTTTGAACAGCCTATCCAT 59.739 38.462 0.00 0.00 0.00 3.41
2860 3397 5.584649 CGTATTTCTTTGAACAGCCTATCCA 59.415 40.000 0.00 0.00 0.00 3.41
2861 3398 5.007724 CCGTATTTCTTTGAACAGCCTATCC 59.992 44.000 0.00 0.00 0.00 2.59
2862 3399 5.504173 GCCGTATTTCTTTGAACAGCCTATC 60.504 44.000 0.00 0.00 0.00 2.08
2864 3401 3.687698 GCCGTATTTCTTTGAACAGCCTA 59.312 43.478 0.00 0.00 0.00 3.93
2866 3403 2.227865 TGCCGTATTTCTTTGAACAGCC 59.772 45.455 0.00 0.00 0.00 4.85
2867 3404 3.552604 TGCCGTATTTCTTTGAACAGC 57.447 42.857 0.00 0.00 0.00 4.40
2868 3405 5.295431 TGATGCCGTATTTCTTTGAACAG 57.705 39.130 0.00 0.00 0.00 3.16
2870 3407 6.981708 CATTTGATGCCGTATTTCTTTGAAC 58.018 36.000 0.00 0.00 0.00 3.18
2890 3432 2.783135 CACTAGACCACTGGTGCATTT 58.217 47.619 5.10 0.00 45.52 2.32
2916 3458 1.185315 GTACGGTGGCAGGGTACTAA 58.815 55.000 16.59 0.00 34.98 2.24
2931 3473 1.660560 ATCGAACCCGGGTCTGTACG 61.661 60.000 30.40 24.88 36.24 3.67
3026 3569 5.365403 AGAACTTCTACAGTGAGAGAACG 57.635 43.478 0.00 3.07 35.12 3.95
3027 3570 9.187455 CTTTTAGAACTTCTACAGTGAGAGAAC 57.813 37.037 0.00 0.00 35.12 3.01
3028 3571 8.361139 CCTTTTAGAACTTCTACAGTGAGAGAA 58.639 37.037 0.00 4.65 35.12 2.87
3029 3572 7.524038 GCCTTTTAGAACTTCTACAGTGAGAGA 60.524 40.741 0.00 0.00 35.12 3.10
3030 3573 6.588373 GCCTTTTAGAACTTCTACAGTGAGAG 59.412 42.308 0.00 0.00 35.12 3.20
3031 3574 6.267928 AGCCTTTTAGAACTTCTACAGTGAGA 59.732 38.462 0.00 0.00 35.12 3.27
3032 3575 6.459923 AGCCTTTTAGAACTTCTACAGTGAG 58.540 40.000 0.00 0.00 35.12 3.51
3033 3576 6.420913 AGCCTTTTAGAACTTCTACAGTGA 57.579 37.500 0.00 0.00 35.12 3.41
3034 3577 5.346281 CGAGCCTTTTAGAACTTCTACAGTG 59.654 44.000 0.00 0.00 35.12 3.66
3035 3578 5.010820 ACGAGCCTTTTAGAACTTCTACAGT 59.989 40.000 0.00 0.00 37.30 3.55
3036 3579 5.471257 ACGAGCCTTTTAGAACTTCTACAG 58.529 41.667 0.00 0.00 0.00 2.74
3037 3580 5.010314 TGACGAGCCTTTTAGAACTTCTACA 59.990 40.000 0.00 0.00 0.00 2.74
3038 3581 5.467705 TGACGAGCCTTTTAGAACTTCTAC 58.532 41.667 0.00 0.00 0.00 2.59
3039 3582 5.717078 TGACGAGCCTTTTAGAACTTCTA 57.283 39.130 0.00 0.00 0.00 2.10
3040 3583 4.602340 TGACGAGCCTTTTAGAACTTCT 57.398 40.909 0.00 0.00 0.00 2.85
3041 3584 5.864628 AATGACGAGCCTTTTAGAACTTC 57.135 39.130 0.00 0.00 0.00 3.01
3042 3585 5.048713 CCAAATGACGAGCCTTTTAGAACTT 60.049 40.000 0.00 0.00 0.00 2.66
3043 3586 4.455877 CCAAATGACGAGCCTTTTAGAACT 59.544 41.667 0.00 0.00 0.00 3.01
3044 3587 4.379499 CCCAAATGACGAGCCTTTTAGAAC 60.379 45.833 0.00 0.00 0.00 3.01
3045 3588 3.756434 CCCAAATGACGAGCCTTTTAGAA 59.244 43.478 0.00 0.00 0.00 2.10
3046 3589 3.008594 TCCCAAATGACGAGCCTTTTAGA 59.991 43.478 0.00 0.00 0.00 2.10
3047 3590 3.127030 GTCCCAAATGACGAGCCTTTTAG 59.873 47.826 0.00 0.00 0.00 1.85
3048 3591 3.078837 GTCCCAAATGACGAGCCTTTTA 58.921 45.455 0.00 0.00 0.00 1.52
3049 3592 1.886542 GTCCCAAATGACGAGCCTTTT 59.113 47.619 0.00 0.00 0.00 2.27
3050 3593 1.073923 AGTCCCAAATGACGAGCCTTT 59.926 47.619 0.00 0.00 40.26 3.11
3051 3594 0.693049 AGTCCCAAATGACGAGCCTT 59.307 50.000 0.00 0.00 40.26 4.35
3052 3595 0.693049 AAGTCCCAAATGACGAGCCT 59.307 50.000 0.00 0.00 40.26 4.58
3053 3596 1.200020 CAAAGTCCCAAATGACGAGCC 59.800 52.381 0.00 0.00 40.26 4.70
3054 3597 1.880027 ACAAAGTCCCAAATGACGAGC 59.120 47.619 0.00 0.00 40.26 5.03
3055 3598 3.815401 AGAACAAAGTCCCAAATGACGAG 59.185 43.478 0.00 0.00 40.26 4.18
3056 3599 3.813166 GAGAACAAAGTCCCAAATGACGA 59.187 43.478 0.00 0.00 40.26 4.20
3057 3600 3.815401 AGAGAACAAAGTCCCAAATGACG 59.185 43.478 0.00 0.00 40.26 4.35
3058 3601 4.022849 CCAGAGAACAAAGTCCCAAATGAC 60.023 45.833 0.00 0.00 35.43 3.06
3059 3602 4.144297 CCAGAGAACAAAGTCCCAAATGA 58.856 43.478 0.00 0.00 0.00 2.57
3060 3603 3.256631 CCCAGAGAACAAAGTCCCAAATG 59.743 47.826 0.00 0.00 0.00 2.32
3061 3604 3.140144 TCCCAGAGAACAAAGTCCCAAAT 59.860 43.478 0.00 0.00 0.00 2.32
3062 3605 2.512056 TCCCAGAGAACAAAGTCCCAAA 59.488 45.455 0.00 0.00 0.00 3.28
3063 3606 2.131854 TCCCAGAGAACAAAGTCCCAA 58.868 47.619 0.00 0.00 0.00 4.12
3064 3607 1.420138 GTCCCAGAGAACAAAGTCCCA 59.580 52.381 0.00 0.00 0.00 4.37
3065 3608 1.700186 AGTCCCAGAGAACAAAGTCCC 59.300 52.381 0.00 0.00 0.00 4.46
3066 3609 2.551071 CCAGTCCCAGAGAACAAAGTCC 60.551 54.545 0.00 0.00 0.00 3.85
3067 3610 2.551071 CCCAGTCCCAGAGAACAAAGTC 60.551 54.545 0.00 0.00 0.00 3.01
3068 3611 1.421646 CCCAGTCCCAGAGAACAAAGT 59.578 52.381 0.00 0.00 0.00 2.66
3069 3612 1.421646 ACCCAGTCCCAGAGAACAAAG 59.578 52.381 0.00 0.00 0.00 2.77
3070 3613 1.420138 GACCCAGTCCCAGAGAACAAA 59.580 52.381 0.00 0.00 0.00 2.83
3071 3614 1.056660 GACCCAGTCCCAGAGAACAA 58.943 55.000 0.00 0.00 0.00 2.83
3072 3615 0.191064 AGACCCAGTCCCAGAGAACA 59.809 55.000 0.00 0.00 32.18 3.18
3073 3616 0.899019 GAGACCCAGTCCCAGAGAAC 59.101 60.000 0.00 0.00 32.18 3.01
3074 3617 0.787084 AGAGACCCAGTCCCAGAGAA 59.213 55.000 0.00 0.00 32.18 2.87
3075 3618 0.040351 CAGAGACCCAGTCCCAGAGA 59.960 60.000 0.00 0.00 32.18 3.10
3076 3619 0.252012 ACAGAGACCCAGTCCCAGAG 60.252 60.000 0.00 0.00 32.18 3.35
3077 3620 1.006043 CTACAGAGACCCAGTCCCAGA 59.994 57.143 0.00 0.00 32.18 3.86
3078 3621 1.006043 TCTACAGAGACCCAGTCCCAG 59.994 57.143 0.00 0.00 32.18 4.45
3079 3622 1.081481 TCTACAGAGACCCAGTCCCA 58.919 55.000 0.00 0.00 32.18 4.37
3080 3623 1.476477 GTCTACAGAGACCCAGTCCC 58.524 60.000 0.00 0.00 45.61 4.46
3088 3631 8.006594 ATGAATGGTCAAGTTGTCTACAGAGAC 61.007 40.741 2.11 0.00 43.98 3.36
3089 3632 5.304357 TGAATGGTCAAGTTGTCTACAGAGA 59.696 40.000 2.11 0.00 0.00 3.10
3090 3633 5.541845 TGAATGGTCAAGTTGTCTACAGAG 58.458 41.667 2.11 0.00 0.00 3.35
3091 3634 5.545063 TGAATGGTCAAGTTGTCTACAGA 57.455 39.130 2.11 0.00 0.00 3.41
3092 3635 7.099764 AGTATGAATGGTCAAGTTGTCTACAG 58.900 38.462 2.11 0.00 37.30 2.74
3093 3636 7.004555 AGTATGAATGGTCAAGTTGTCTACA 57.995 36.000 2.11 0.00 37.30 2.74
3094 3637 7.387948 ACAAGTATGAATGGTCAAGTTGTCTAC 59.612 37.037 2.11 0.00 35.65 2.59
3095 3638 7.387673 CACAAGTATGAATGGTCAAGTTGTCTA 59.612 37.037 2.11 0.00 36.89 2.59
3096 3639 6.205464 CACAAGTATGAATGGTCAAGTTGTCT 59.795 38.462 2.11 0.00 36.89 3.41
3097 3640 6.373779 CACAAGTATGAATGGTCAAGTTGTC 58.626 40.000 2.11 0.00 36.89 3.18
3098 3641 5.278463 GCACAAGTATGAATGGTCAAGTTGT 60.278 40.000 2.11 0.00 38.06 3.32
3099 3642 5.156355 GCACAAGTATGAATGGTCAAGTTG 58.844 41.667 0.00 0.00 37.30 3.16
3100 3643 4.826733 TGCACAAGTATGAATGGTCAAGTT 59.173 37.500 0.00 0.00 37.30 2.66
3101 3644 4.216257 GTGCACAAGTATGAATGGTCAAGT 59.784 41.667 13.17 0.00 37.30 3.16
3102 3645 4.669965 CGTGCACAAGTATGAATGGTCAAG 60.670 45.833 18.64 0.00 37.30 3.02
3103 3646 3.188254 CGTGCACAAGTATGAATGGTCAA 59.812 43.478 18.64 0.00 37.30 3.18
3104 3647 2.741517 CGTGCACAAGTATGAATGGTCA 59.258 45.455 18.64 0.00 38.41 4.02
3105 3648 2.095853 CCGTGCACAAGTATGAATGGTC 59.904 50.000 18.64 0.00 0.00 4.02
3106 3649 2.083774 CCGTGCACAAGTATGAATGGT 58.916 47.619 18.64 0.00 0.00 3.55
3107 3650 2.355197 TCCGTGCACAAGTATGAATGG 58.645 47.619 18.64 5.69 0.00 3.16
3108 3651 4.621068 ATTCCGTGCACAAGTATGAATG 57.379 40.909 18.64 0.00 0.00 2.67
3109 3652 5.065988 GGTAATTCCGTGCACAAGTATGAAT 59.934 40.000 18.64 10.93 0.00 2.57
3110 3653 4.393680 GGTAATTCCGTGCACAAGTATGAA 59.606 41.667 18.64 9.16 0.00 2.57
3111 3654 3.936453 GGTAATTCCGTGCACAAGTATGA 59.064 43.478 18.64 0.00 0.00 2.15
3112 3655 3.687212 TGGTAATTCCGTGCACAAGTATG 59.313 43.478 18.64 0.00 39.52 2.39
3113 3656 3.945346 TGGTAATTCCGTGCACAAGTAT 58.055 40.909 18.64 3.92 39.52 2.12
3114 3657 3.404224 TGGTAATTCCGTGCACAAGTA 57.596 42.857 18.64 5.31 39.52 2.24
3115 3658 2.264005 TGGTAATTCCGTGCACAAGT 57.736 45.000 18.64 6.37 39.52 3.16
3116 3659 3.427503 GGATTGGTAATTCCGTGCACAAG 60.428 47.826 18.64 7.65 39.52 3.16
3117 3660 2.490115 GGATTGGTAATTCCGTGCACAA 59.510 45.455 18.64 4.69 39.52 3.33
3118 3661 2.088423 GGATTGGTAATTCCGTGCACA 58.912 47.619 18.64 0.00 39.52 4.57
3119 3662 2.365582 AGGATTGGTAATTCCGTGCAC 58.634 47.619 6.82 6.82 39.52 4.57
3120 3663 2.799126 AGGATTGGTAATTCCGTGCA 57.201 45.000 0.00 0.00 39.52 4.57
3121 3664 4.638865 ACTTAAGGATTGGTAATTCCGTGC 59.361 41.667 7.53 0.00 39.52 5.34
3122 3665 5.448632 GCACTTAAGGATTGGTAATTCCGTG 60.449 44.000 7.53 0.00 39.52 4.94
3123 3666 4.638865 GCACTTAAGGATTGGTAATTCCGT 59.361 41.667 7.53 0.00 39.52 4.69
3124 3667 4.638421 TGCACTTAAGGATTGGTAATTCCG 59.362 41.667 7.53 0.00 39.52 4.30
3125 3668 6.524101 TTGCACTTAAGGATTGGTAATTCC 57.476 37.500 7.53 0.00 0.00 3.01
3126 3669 8.470002 AGAATTGCACTTAAGGATTGGTAATTC 58.530 33.333 7.53 14.71 33.38 2.17
3127 3670 8.253113 CAGAATTGCACTTAAGGATTGGTAATT 58.747 33.333 7.53 7.93 0.00 1.40
3128 3671 7.397192 ACAGAATTGCACTTAAGGATTGGTAAT 59.603 33.333 7.53 0.14 0.00 1.89
3129 3672 6.719370 ACAGAATTGCACTTAAGGATTGGTAA 59.281 34.615 7.53 0.00 0.00 2.85
3130 3673 6.245408 ACAGAATTGCACTTAAGGATTGGTA 58.755 36.000 7.53 0.00 0.00 3.25
3131 3674 5.079643 ACAGAATTGCACTTAAGGATTGGT 58.920 37.500 7.53 0.94 0.00 3.67
3132 3675 5.393461 GGACAGAATTGCACTTAAGGATTGG 60.393 44.000 7.53 0.42 0.00 3.16
3133 3676 5.644644 GGACAGAATTGCACTTAAGGATTG 58.355 41.667 7.53 0.00 0.00 2.67
3134 3677 4.396166 CGGACAGAATTGCACTTAAGGATT 59.604 41.667 7.53 1.82 0.00 3.01
3135 3678 3.941483 CGGACAGAATTGCACTTAAGGAT 59.059 43.478 7.53 0.00 0.00 3.24
3136 3679 3.334691 CGGACAGAATTGCACTTAAGGA 58.665 45.455 7.53 0.00 0.00 3.36
3137 3680 2.420022 CCGGACAGAATTGCACTTAAGG 59.580 50.000 7.53 0.00 0.00 2.69
3138 3681 3.125316 GTCCGGACAGAATTGCACTTAAG 59.875 47.826 29.75 0.00 0.00 1.85
3139 3682 3.071479 GTCCGGACAGAATTGCACTTAA 58.929 45.455 29.75 0.00 0.00 1.85
3140 3683 2.037902 TGTCCGGACAGAATTGCACTTA 59.962 45.455 33.23 5.69 36.21 2.24
3141 3684 1.202758 TGTCCGGACAGAATTGCACTT 60.203 47.619 33.23 0.00 36.21 3.16
3142 3685 0.396435 TGTCCGGACAGAATTGCACT 59.604 50.000 33.23 0.00 36.21 4.40
3143 3686 0.517316 GTGTCCGGACAGAATTGCAC 59.483 55.000 37.04 18.89 42.74 4.57
3144 3687 0.948623 CGTGTCCGGACAGAATTGCA 60.949 55.000 37.04 10.53 42.74 4.08
3145 3688 0.669318 TCGTGTCCGGACAGAATTGC 60.669 55.000 37.04 22.34 42.74 3.56
3146 3689 1.068474 GTCGTGTCCGGACAGAATTG 58.932 55.000 37.04 22.61 42.74 2.32
3147 3690 0.966920 AGTCGTGTCCGGACAGAATT 59.033 50.000 37.04 21.03 42.74 2.17
3148 3691 0.526662 GAGTCGTGTCCGGACAGAAT 59.473 55.000 37.04 30.45 42.74 2.40
3149 3692 0.820482 TGAGTCGTGTCCGGACAGAA 60.820 55.000 37.04 24.40 42.74 3.02
3150 3693 0.608308 ATGAGTCGTGTCCGGACAGA 60.608 55.000 37.04 29.38 42.74 3.41
3151 3694 0.243907 AATGAGTCGTGTCCGGACAG 59.756 55.000 37.04 27.77 42.74 3.51
3152 3695 0.677288 AAATGAGTCGTGTCCGGACA 59.323 50.000 33.23 33.23 39.32 4.02
3153 3696 1.725164 GAAAATGAGTCGTGTCCGGAC 59.275 52.381 28.17 28.17 33.95 4.79
3154 3697 1.341852 TGAAAATGAGTCGTGTCCGGA 59.658 47.619 0.00 0.00 33.95 5.14
3155 3698 1.790755 TGAAAATGAGTCGTGTCCGG 58.209 50.000 0.00 0.00 33.95 5.14
3156 3699 3.431912 TGAATGAAAATGAGTCGTGTCCG 59.568 43.478 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.