Multiple sequence alignment - TraesCS5D01G225300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G225300 chr5D 100.000 3548 0 0 1 3548 333052473 333056020 0.000000e+00 6553
1 TraesCS5D01G225300 chr5D 74.203 659 138 26 1568 2208 503049168 503049812 2.740000e-61 246
2 TraesCS5D01G225300 chr5A 90.588 3655 182 49 1 3539 434133949 434137557 0.000000e+00 4695
3 TraesCS5D01G225300 chr5B 91.483 3311 148 49 1 3258 389155482 389158711 0.000000e+00 4429
4 TraesCS5D01G225300 chr5B 93.333 300 11 5 3244 3539 389158732 389159026 5.440000e-118 435
5 TraesCS5D01G225300 chr5B 74.331 635 131 24 1568 2184 631826630 631827250 1.270000e-59 241
6 TraesCS5D01G225300 chr6B 81.402 328 24 16 3247 3539 52078082 52078407 2.130000e-57 233
7 TraesCS5D01G225300 chr6A 78.365 208 40 5 1709 1914 613664291 613664087 2.870000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G225300 chr5D 333052473 333056020 3547 False 6553 6553 100.000 1 3548 1 chr5D.!!$F1 3547
1 TraesCS5D01G225300 chr5D 503049168 503049812 644 False 246 246 74.203 1568 2208 1 chr5D.!!$F2 640
2 TraesCS5D01G225300 chr5A 434133949 434137557 3608 False 4695 4695 90.588 1 3539 1 chr5A.!!$F1 3538
3 TraesCS5D01G225300 chr5B 389155482 389159026 3544 False 2432 4429 92.408 1 3539 2 chr5B.!!$F2 3538
4 TraesCS5D01G225300 chr5B 631826630 631827250 620 False 241 241 74.331 1568 2184 1 chr5B.!!$F1 616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
373 386 0.613572 TTTCCGCCCCTTCATTTCCC 60.614 55.0 0.0 0.0 0.00 3.97 F
1221 1271 0.902048 TGCAGCTCTACCTCAGCAGT 60.902 55.0 0.0 0.0 39.56 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2420 2483 0.109226 CTCCTCTTCGTCGTTGTCCC 60.109 60.0 0.00 0.0 0.0 4.46 R
2658 2727 0.109597 CCTTGCATTGCGTTCTCCAC 60.110 55.0 3.84 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 8.785468 TTAATTGTTAACGAGGCTACAAAAAC 57.215 30.769 4.08 0.00 34.54 2.43
90 91 9.998106 ACAATATGATTAGGTTAGCGACTTAAT 57.002 29.630 9.33 9.33 41.59 1.40
141 142 6.714492 TGCGTATAGACTCGTTAAATTCGTA 58.286 36.000 0.00 0.00 0.00 3.43
166 176 3.578716 TGCTAGTAGAAGTTTGCCTCACT 59.421 43.478 0.00 0.00 0.00 3.41
224 234 0.813184 CGATGGTTGAGCTGCCAAAT 59.187 50.000 0.00 0.00 38.38 2.32
227 237 1.838112 TGGTTGAGCTGCCAAATAGG 58.162 50.000 0.00 0.00 41.84 2.57
253 263 7.199078 CGTAGACCTATAGTAAACAGGGAAAC 58.801 42.308 0.00 0.00 33.48 2.78
271 281 5.182380 GGGAAACTCCATATTCACGAAAACA 59.818 40.000 0.00 0.00 38.64 2.83
278 288 7.647715 ACTCCATATTCACGAAAACAAAAAGTG 59.352 33.333 0.00 0.00 0.00 3.16
326 336 2.086094 ACACGGTTCCGTTTTGTTTCT 58.914 42.857 14.42 0.00 40.97 2.52
360 373 5.509605 AAAATTTGCGTTTCTATTTCCGC 57.490 34.783 0.00 0.00 45.92 5.54
361 374 2.622546 TTTGCGTTTCTATTTCCGCC 57.377 45.000 0.00 0.00 45.18 6.13
362 375 0.806241 TTGCGTTTCTATTTCCGCCC 59.194 50.000 0.00 0.00 45.18 6.13
364 377 0.746923 GCGTTTCTATTTCCGCCCCT 60.747 55.000 0.00 0.00 40.25 4.79
365 378 1.746470 CGTTTCTATTTCCGCCCCTT 58.254 50.000 0.00 0.00 0.00 3.95
366 379 1.669265 CGTTTCTATTTCCGCCCCTTC 59.331 52.381 0.00 0.00 0.00 3.46
373 386 0.613572 TTTCCGCCCCTTCATTTCCC 60.614 55.000 0.00 0.00 0.00 3.97
418 446 2.997986 GTTTCCGCTCCGTTTTCATCTA 59.002 45.455 0.00 0.00 0.00 1.98
456 486 1.219646 TCCGTTTTCCGTTTCCGAAG 58.780 50.000 0.00 0.00 35.63 3.79
472 502 1.332552 CGAAGAACACGGTTCCGTTTG 60.333 52.381 14.42 7.19 40.97 2.93
477 512 3.688673 AGAACACGGTTCCGTTTGTAAAA 59.311 39.130 14.42 0.00 40.97 1.52
516 551 3.116939 TCTGTTTTCCAATTTCCTCCCCA 60.117 43.478 0.00 0.00 0.00 4.96
584 620 5.411361 TCATCCTTGTTTTCAACCATCTACG 59.589 40.000 0.00 0.00 35.77 3.51
752 795 2.507992 CGACCTTGCTCTGAGGCG 60.508 66.667 6.83 0.00 37.84 5.52
768 811 2.426651 GCGATGGCCTACTACTCCA 58.573 57.895 3.32 0.00 0.00 3.86
769 812 0.969894 GCGATGGCCTACTACTCCAT 59.030 55.000 3.32 0.00 42.83 3.41
770 813 1.337260 GCGATGGCCTACTACTCCATG 60.337 57.143 3.32 0.00 40.43 3.66
771 814 1.273606 CGATGGCCTACTACTCCATGG 59.726 57.143 4.97 4.97 40.43 3.66
772 815 2.609747 GATGGCCTACTACTCCATGGA 58.390 52.381 15.27 15.27 40.43 3.41
773 816 2.088104 TGGCCTACTACTCCATGGAG 57.912 55.000 35.55 35.55 46.91 3.86
800 843 5.987347 CACACAAGGCTTCATCTTTCATTTT 59.013 36.000 0.00 0.00 0.00 1.82
854 897 4.580995 TCTCAGCGTCTCCTCCTATAAAAG 59.419 45.833 0.00 0.00 0.00 2.27
878 921 2.284699 CCCCCTGACCCTTCTCGT 60.285 66.667 0.00 0.00 0.00 4.18
879 922 1.918800 CCCCCTGACCCTTCTCGTT 60.919 63.158 0.00 0.00 0.00 3.85
911 954 4.265056 AGGCCAACCTCGCCGTTT 62.265 61.111 5.01 0.00 46.34 3.60
912 955 3.733960 GGCCAACCTCGCCGTTTC 61.734 66.667 0.00 0.00 36.47 2.78
913 956 2.975799 GCCAACCTCGCCGTTTCA 60.976 61.111 0.00 0.00 0.00 2.69
914 957 2.966309 GCCAACCTCGCCGTTTCAG 61.966 63.158 0.00 0.00 0.00 3.02
915 958 2.556287 CAACCTCGCCGTTTCAGC 59.444 61.111 0.00 0.00 0.00 4.26
916 959 2.110213 AACCTCGCCGTTTCAGCA 59.890 55.556 0.00 0.00 0.00 4.41
917 960 1.961277 AACCTCGCCGTTTCAGCAG 60.961 57.895 0.00 0.00 0.00 4.24
918 961 3.793144 CCTCGCCGTTTCAGCAGC 61.793 66.667 0.00 0.00 0.00 5.25
962 1012 1.071605 CCTCGCGTTTCTTCTTCCAG 58.928 55.000 5.77 0.00 0.00 3.86
989 1039 3.706373 GGGTGCAAGAGAGGCGGA 61.706 66.667 0.00 0.00 0.00 5.54
994 1044 1.153667 GCAAGAGAGGCGGAGTGAG 60.154 63.158 0.00 0.00 0.00 3.51
1137 1187 3.787001 CTCACCCGGGCCTTCTCC 61.787 72.222 24.08 0.00 0.00 3.71
1221 1271 0.902048 TGCAGCTCTACCTCAGCAGT 60.902 55.000 0.00 0.00 39.56 4.40
1632 1682 4.227134 CTCGCCATGGACCCCGAG 62.227 72.222 18.40 19.63 40.76 4.63
1982 2039 4.175489 CGCGATCGACCAGGACGT 62.175 66.667 21.57 0.00 38.10 4.34
2209 2266 4.456222 TCAAGAACTACCTCTGTCTCGAAG 59.544 45.833 0.00 0.00 0.00 3.79
2210 2267 4.289238 AGAACTACCTCTGTCTCGAAGA 57.711 45.455 0.00 0.00 0.00 2.87
2212 2269 3.706600 ACTACCTCTGTCTCGAAGACT 57.293 47.619 13.65 0.14 45.27 3.24
2213 2270 3.602483 ACTACCTCTGTCTCGAAGACTC 58.398 50.000 13.65 0.00 45.27 3.36
2214 2271 2.871096 ACCTCTGTCTCGAAGACTCT 57.129 50.000 13.65 0.00 45.27 3.24
2445 2508 0.037877 ACGACGAAGAGGAGGAGGAA 59.962 55.000 0.00 0.00 0.00 3.36
2600 2663 1.002544 ACAGGAAGAGGGAAAGCGAAG 59.997 52.381 0.00 0.00 0.00 3.79
2629 2692 3.851845 TTCCCTGTTCGGTCACGCG 62.852 63.158 3.53 3.53 40.69 6.01
2669 2738 0.827925 ACTGGAGAGTGGAGAACGCA 60.828 55.000 0.00 0.00 0.00 5.24
2686 2756 4.519540 ACGCAATGCAAGGAAAAATAGT 57.480 36.364 5.91 0.00 0.00 2.12
2756 2838 8.040132 CACTCCTAGATGAATTCTCTTGAGTTT 58.960 37.037 21.16 10.42 35.86 2.66
2761 2843 9.823098 CTAGATGAATTCTCTTGAGTTTGTTTG 57.177 33.333 7.05 0.00 35.79 2.93
2762 2844 7.655490 AGATGAATTCTCTTGAGTTTGTTTGG 58.345 34.615 7.05 0.00 0.00 3.28
2764 2846 7.873719 TGAATTCTCTTGAGTTTGTTTGGTA 57.126 32.000 7.05 0.00 0.00 3.25
2766 2848 8.352201 TGAATTCTCTTGAGTTTGTTTGGTATG 58.648 33.333 7.05 0.00 0.00 2.39
2780 2872 6.582636 TGTTTGGTATGCTCTATGGTAAGAG 58.417 40.000 0.00 0.00 44.92 2.85
2796 2888 6.467677 TGGTAAGAGGAAAGAGATGTTTGAG 58.532 40.000 0.00 0.00 0.00 3.02
2798 2890 4.566426 AGAGGAAAGAGATGTTTGAGGG 57.434 45.455 0.00 0.00 0.00 4.30
2868 2960 4.559063 CATGCGCCTCCCTCCCTG 62.559 72.222 4.18 0.00 0.00 4.45
2871 2963 4.785453 GCGCCTCCCTCCCTGTTG 62.785 72.222 0.00 0.00 0.00 3.33
2872 2964 3.322466 CGCCTCCCTCCCTGTTGT 61.322 66.667 0.00 0.00 0.00 3.32
2917 3009 2.620115 AGTTGGTGCAGATTCAACAGTG 59.380 45.455 18.16 0.00 42.08 3.66
2953 3045 2.978946 TTTTCCCTAGGCCGGCAGG 61.979 63.158 30.85 26.44 41.62 4.85
3115 3224 4.112634 GCTTTCGGAGAAAAATAATGCCC 58.887 43.478 0.00 0.00 45.90 5.36
3143 3252 1.561542 GGAGTTGGATCATGGGTCTGT 59.438 52.381 0.00 0.00 0.00 3.41
3176 3285 2.915659 TATGAGCCGCCCCCTACG 60.916 66.667 0.00 0.00 0.00 3.51
3188 3297 3.083997 CCTACGCCCTGGCCTTCT 61.084 66.667 3.32 0.00 37.98 2.85
3189 3298 2.187946 CTACGCCCTGGCCTTCTG 59.812 66.667 3.32 0.00 37.98 3.02
3457 3640 0.529378 GTGCCTGCAAAATCAGAGGG 59.471 55.000 0.00 0.00 36.19 4.30
3523 3709 0.179468 TCTTATTCCCTTTCCGCGGG 59.821 55.000 27.83 9.43 43.38 6.13
3539 3725 1.660917 GGGCGAGAGTCGGATTAGG 59.339 63.158 0.00 0.00 40.84 2.69
3540 3726 1.007154 GGCGAGAGTCGGATTAGGC 60.007 63.158 0.00 0.00 40.84 3.93
3541 3727 1.007154 GCGAGAGTCGGATTAGGCC 60.007 63.158 0.00 0.00 40.84 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 7.928103 TGTTTTTGTAGCCTCGTTAACAATTA 58.072 30.769 6.39 0.00 32.31 1.40
52 53 8.903820 ACCTAATCATATTGTTTTTGTAGCCTC 58.096 33.333 0.00 0.00 0.00 4.70
53 54 8.823220 ACCTAATCATATTGTTTTTGTAGCCT 57.177 30.769 0.00 0.00 0.00 4.58
99 100 3.055385 ACGCAATTGTCCTGTACTACCAT 60.055 43.478 7.40 0.00 0.00 3.55
116 117 6.029607 ACGAATTTAACGAGTCTATACGCAA 58.970 36.000 0.00 0.00 34.70 4.85
141 142 2.299297 AGGCAAACTTCTACTAGCACGT 59.701 45.455 0.00 0.00 0.00 4.49
166 176 7.441467 ACACACAGTGATCAGAATGACCCAA 62.441 44.000 7.81 0.00 42.33 4.12
224 234 6.000219 CCTGTTTACTATAGGTCTACGCCTA 59.000 44.000 4.43 0.00 44.37 3.93
227 237 4.823989 TCCCTGTTTACTATAGGTCTACGC 59.176 45.833 4.43 0.00 33.44 4.42
245 255 4.137116 TCGTGAATATGGAGTTTCCCTG 57.863 45.455 0.00 0.00 35.03 4.45
253 263 7.358352 GCACTTTTTGTTTTCGTGAATATGGAG 60.358 37.037 0.00 0.00 0.00 3.86
271 281 2.159296 GGACACGGAAACTGCACTTTTT 60.159 45.455 0.00 0.00 0.00 1.94
278 288 1.568025 GAACGGACACGGAAACTGC 59.432 57.895 0.00 0.00 46.48 4.40
353 363 1.485124 GGAAATGAAGGGGCGGAAAT 58.515 50.000 0.00 0.00 0.00 2.17
383 407 0.949105 GGAAACGCTCCGCTTCTTCA 60.949 55.000 1.58 0.00 33.30 3.02
584 620 3.319122 GCATATGGATCCTGTTGGGTTTC 59.681 47.826 14.23 0.00 36.25 2.78
669 707 1.805254 CAATGCAGCGAAGAAGGGG 59.195 57.895 0.00 0.00 0.00 4.79
752 795 2.564947 CTCCATGGAGTAGTAGGCCATC 59.435 54.545 30.55 0.00 40.29 3.51
761 804 1.827344 TGTGTGAGCTCCATGGAGTAG 59.173 52.381 36.32 18.06 43.70 2.57
762 805 1.937191 TGTGTGAGCTCCATGGAGTA 58.063 50.000 36.32 23.01 43.70 2.59
763 806 1.002888 CTTGTGTGAGCTCCATGGAGT 59.997 52.381 36.32 25.23 43.70 3.85
764 807 1.678123 CCTTGTGTGAGCTCCATGGAG 60.678 57.143 33.73 33.73 44.56 3.86
765 808 0.325933 CCTTGTGTGAGCTCCATGGA 59.674 55.000 15.27 15.27 0.00 3.41
766 809 1.310933 GCCTTGTGTGAGCTCCATGG 61.311 60.000 12.15 13.98 0.00 3.66
767 810 0.322277 AGCCTTGTGTGAGCTCCATG 60.322 55.000 12.15 4.45 28.40 3.66
768 811 0.403271 AAGCCTTGTGTGAGCTCCAT 59.597 50.000 12.15 0.00 35.30 3.41
769 812 0.250467 GAAGCCTTGTGTGAGCTCCA 60.250 55.000 12.15 6.01 35.30 3.86
770 813 0.250467 TGAAGCCTTGTGTGAGCTCC 60.250 55.000 12.15 3.09 35.30 4.70
771 814 1.736681 GATGAAGCCTTGTGTGAGCTC 59.263 52.381 6.82 6.82 35.30 4.09
772 815 1.350351 AGATGAAGCCTTGTGTGAGCT 59.650 47.619 0.00 0.00 38.88 4.09
773 816 1.818642 AGATGAAGCCTTGTGTGAGC 58.181 50.000 0.00 0.00 0.00 4.26
800 843 4.103627 GGGACGAAGGATTATTTTAGGGGA 59.896 45.833 0.00 0.00 0.00 4.81
875 918 2.685897 CCTTGGACAAGTTTTCCAACGA 59.314 45.455 17.69 0.66 46.23 3.85
877 920 2.483013 GGCCTTGGACAAGTTTTCCAAC 60.483 50.000 17.69 10.24 46.23 3.77
879 922 1.342474 TGGCCTTGGACAAGTTTTCCA 60.342 47.619 6.66 6.66 41.64 3.53
896 939 2.966309 CTGAAACGGCGAGGTTGGC 61.966 63.158 16.62 0.00 0.00 4.52
906 949 2.458006 GAAACGGGCTGCTGAAACGG 62.458 60.000 0.00 0.00 0.00 4.44
907 950 1.082104 GAAACGGGCTGCTGAAACG 60.082 57.895 0.00 0.00 0.00 3.60
908 951 0.040067 CTGAAACGGGCTGCTGAAAC 60.040 55.000 0.00 0.00 0.00 2.78
909 952 0.465460 ACTGAAACGGGCTGCTGAAA 60.465 50.000 0.00 0.00 0.00 2.69
910 953 0.884704 GACTGAAACGGGCTGCTGAA 60.885 55.000 0.00 0.00 0.00 3.02
911 954 1.301716 GACTGAAACGGGCTGCTGA 60.302 57.895 0.00 0.00 0.00 4.26
912 955 2.671177 CGACTGAAACGGGCTGCTG 61.671 63.158 0.00 0.00 0.00 4.41
913 956 2.357517 CGACTGAAACGGGCTGCT 60.358 61.111 0.00 0.00 0.00 4.24
914 957 3.423154 CCGACTGAAACGGGCTGC 61.423 66.667 0.00 0.00 45.65 5.25
989 1039 0.534412 CTCCTTCATGGTCGCTCACT 59.466 55.000 0.00 0.00 37.07 3.41
994 1044 1.471676 CCAGTACTCCTTCATGGTCGC 60.472 57.143 0.00 0.00 37.07 5.19
1128 1178 2.747443 GCAGTAGGGGGAGAAGGCC 61.747 68.421 0.00 0.00 0.00 5.19
1137 1187 0.381089 CGTCGAAGTAGCAGTAGGGG 59.619 60.000 0.00 0.00 0.00 4.79
2416 2479 1.443872 CTTCGTCGTTGTCCCTCGG 60.444 63.158 0.00 0.00 0.00 4.63
2420 2483 0.109226 CTCCTCTTCGTCGTTGTCCC 60.109 60.000 0.00 0.00 0.00 4.46
2445 2508 2.304831 GCTCTCCAGGGCCCTCTTT 61.305 63.158 25.77 0.00 0.00 2.52
2572 2635 2.060980 CCTCTTCCTGTCCCCCTCG 61.061 68.421 0.00 0.00 0.00 4.63
2600 2663 3.554129 CCGAACAGGGAAATTTTGAACCC 60.554 47.826 4.79 4.79 42.36 4.11
2620 2683 2.044860 GAAGAATATCTCGCGTGACCG 58.955 52.381 13.75 0.00 37.07 4.79
2629 2692 6.765512 CCAGTGAAAAGGGAGAAGAATATCTC 59.234 42.308 0.00 0.00 44.18 2.75
2658 2727 0.109597 CCTTGCATTGCGTTCTCCAC 60.110 55.000 3.84 0.00 0.00 4.02
2659 2728 0.250684 TCCTTGCATTGCGTTCTCCA 60.251 50.000 3.84 0.00 0.00 3.86
2661 2730 2.704725 TTTCCTTGCATTGCGTTCTC 57.295 45.000 3.84 0.00 0.00 2.87
2663 2732 4.923281 ACTATTTTTCCTTGCATTGCGTTC 59.077 37.500 3.84 0.00 0.00 3.95
2664 2733 4.881920 ACTATTTTTCCTTGCATTGCGTT 58.118 34.783 3.84 0.00 0.00 4.84
2686 2756 5.105473 ACATCGAATAACGGAAGAGGAAAGA 60.105 40.000 0.00 0.00 42.82 2.52
2726 2796 4.906664 AGAGAATTCATCTAGGAGTGCCAT 59.093 41.667 8.44 0.00 38.96 4.40
2756 2838 6.408092 CCTCTTACCATAGAGCATACCAAACA 60.408 42.308 0.00 0.00 40.28 2.83
2761 2843 6.267928 TCTTTCCTCTTACCATAGAGCATACC 59.732 42.308 0.00 0.00 40.28 2.73
2762 2844 7.231722 TCTCTTTCCTCTTACCATAGAGCATAC 59.768 40.741 0.00 0.00 40.28 2.39
2764 2846 6.139671 TCTCTTTCCTCTTACCATAGAGCAT 58.860 40.000 0.00 0.00 40.28 3.79
2766 2848 6.041523 ACATCTCTTTCCTCTTACCATAGAGC 59.958 42.308 0.00 0.00 40.28 4.09
2780 2872 3.013219 GAGCCCTCAAACATCTCTTTCC 58.987 50.000 0.00 0.00 0.00 3.13
2796 2888 0.250901 AATGACACCAGTGTGAGCCC 60.251 55.000 8.43 0.00 45.76 5.19
2798 2890 0.239347 GCAATGACACCAGTGTGAGC 59.761 55.000 8.43 3.27 45.76 4.26
2864 2956 1.955778 TCTCATGCACAAACAACAGGG 59.044 47.619 0.00 0.00 0.00 4.45
2865 2957 3.551454 CCTTCTCATGCACAAACAACAGG 60.551 47.826 0.00 0.00 0.00 4.00
2866 2958 3.067180 ACCTTCTCATGCACAAACAACAG 59.933 43.478 0.00 0.00 0.00 3.16
2867 2959 3.023119 ACCTTCTCATGCACAAACAACA 58.977 40.909 0.00 0.00 0.00 3.33
2868 2960 3.632189 GACCTTCTCATGCACAAACAAC 58.368 45.455 0.00 0.00 0.00 3.32
2869 2961 2.290367 CGACCTTCTCATGCACAAACAA 59.710 45.455 0.00 0.00 0.00 2.83
2870 2962 1.872952 CGACCTTCTCATGCACAAACA 59.127 47.619 0.00 0.00 0.00 2.83
2871 2963 1.873591 ACGACCTTCTCATGCACAAAC 59.126 47.619 0.00 0.00 0.00 2.93
2872 2964 1.872952 CACGACCTTCTCATGCACAAA 59.127 47.619 0.00 0.00 0.00 2.83
2917 3009 1.291877 AACGTGATGTGCCTTCGAGC 61.292 55.000 0.00 0.00 0.00 5.03
2955 3047 0.318107 CACAAAGCGCAGAAACCCTG 60.318 55.000 11.47 0.00 45.67 4.45
2956 3048 0.751643 ACACAAAGCGCAGAAACCCT 60.752 50.000 11.47 0.00 0.00 4.34
3115 3224 4.096003 ATCCAACTCCACGGGCGG 62.096 66.667 0.00 0.00 0.00 6.13
3143 3252 2.428530 CTCATACAGTGCCTGCAGAGTA 59.571 50.000 17.39 9.97 34.37 2.59
3176 3285 0.540597 AGAAAACAGAAGGCCAGGGC 60.541 55.000 5.01 4.33 41.06 5.19
3188 3297 1.493772 CGTCCTGCGTGTAGAAAACA 58.506 50.000 0.00 0.00 35.06 2.83
3189 3298 0.788391 CCGTCCTGCGTGTAGAAAAC 59.212 55.000 0.00 0.00 39.32 2.43
3285 3429 6.488769 TCAACTCCTGGTTTGTTTCTACTA 57.511 37.500 9.57 0.00 35.74 1.82
3286 3430 5.367945 TCAACTCCTGGTTTGTTTCTACT 57.632 39.130 9.57 0.00 35.74 2.57
3287 3431 6.128254 GCTATCAACTCCTGGTTTGTTTCTAC 60.128 42.308 9.57 0.00 35.74 2.59
3422 3588 1.293924 GCACATGGAATCGAGTGAGG 58.706 55.000 4.57 0.00 33.99 3.86
3523 3709 1.007154 GGCCTAATCCGACTCTCGC 60.007 63.158 0.00 0.00 38.82 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.