Multiple sequence alignment - TraesCS5D01G213700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G213700 chr5D 100.000 2468 0 0 1 2468 322976026 322973559 0.000000e+00 4558.0
1 TraesCS5D01G213700 chr5D 89.328 253 24 3 2191 2442 233060753 233061003 5.120000e-82 315.0
2 TraesCS5D01G213700 chr5D 95.349 43 2 0 2099 2141 531473771 531473813 4.400000e-08 69.4
3 TraesCS5D01G213700 chr5A 87.481 2013 160 43 461 2454 419693578 419691639 0.000000e+00 2237.0
4 TraesCS5D01G213700 chr5B 87.323 1341 82 29 487 1765 375179578 375178264 0.000000e+00 1454.0
5 TraesCS5D01G213700 chr5B 82.759 232 29 9 1836 2067 665998412 665998192 1.940000e-46 196.0
6 TraesCS5D01G213700 chr5B 84.181 177 18 7 2136 2309 337029522 337029353 1.960000e-36 163.0
7 TraesCS5D01G213700 chr5B 95.455 44 2 0 2102 2145 395709933 395709890 1.220000e-08 71.3
8 TraesCS5D01G213700 chr7D 90.584 308 25 3 77 382 118445477 118445782 2.960000e-109 405.0
9 TraesCS5D01G213700 chr7D 92.042 289 17 5 70 354 192985375 192985661 3.820000e-108 401.0
10 TraesCS5D01G213700 chr2D 89.490 314 30 3 71 382 295802724 295803036 6.400000e-106 394.0
11 TraesCS5D01G213700 chr2D 88.673 309 32 2 76 382 499734095 499733788 8.330000e-100 374.0
12 TraesCS5D01G213700 chr3D 89.644 309 29 3 76 382 426982117 426982424 8.280000e-105 390.0
13 TraesCS5D01G213700 chr3D 84.431 334 37 7 2136 2454 531564816 531564483 5.120000e-82 315.0
14 TraesCS5D01G213700 chr3D 79.874 318 38 5 2136 2451 82110308 82110601 2.490000e-50 209.0
15 TraesCS5D01G213700 chr3D 77.255 255 45 10 1761 2010 441156722 441156476 1.190000e-28 137.0
16 TraesCS5D01G213700 chr3D 95.556 45 1 1 2098 2141 422059982 422060026 1.220000e-08 71.3
17 TraesCS5D01G213700 chr3D 95.455 44 1 1 2099 2141 158081002 158080959 4.400000e-08 69.4
18 TraesCS5D01G213700 chr3D 89.091 55 4 2 2103 2157 68383354 68383302 1.580000e-07 67.6
19 TraesCS5D01G213700 chr1B 89.355 310 28 5 77 382 474603123 474603431 3.850000e-103 385.0
20 TraesCS5D01G213700 chr1B 86.025 322 39 4 2138 2454 678449526 678449206 8.450000e-90 340.0
21 TraesCS5D01G213700 chr2B 91.197 284 22 3 76 357 792988952 792989234 1.380000e-102 383.0
22 TraesCS5D01G213700 chr2B 84.984 313 36 4 2140 2451 631338891 631338589 8.570000e-80 307.0
23 TraesCS5D01G213700 chr2B 93.478 46 1 2 2103 2148 733842037 733841994 1.580000e-07 67.6
24 TraesCS5D01G213700 chr6D 90.690 290 21 4 76 359 432970036 432969747 4.980000e-102 381.0
25 TraesCS5D01G213700 chr6D 87.948 307 35 2 76 382 328503777 328504081 6.490000e-96 361.0
26 TraesCS5D01G213700 chr6D 79.839 248 39 5 1836 2073 339951119 339950873 1.170000e-38 171.0
27 TraesCS5D01G213700 chr6D 82.723 191 32 1 1844 2033 469268516 469268706 4.220000e-38 169.0
28 TraesCS5D01G213700 chr6D 88.136 59 2 5 2089 2144 302061343 302061399 5.700000e-07 65.8
29 TraesCS5D01G213700 chr4D 86.646 322 38 4 2134 2454 391646664 391646347 3.900000e-93 351.0
30 TraesCS5D01G213700 chr2A 89.313 262 27 1 2191 2451 329694715 329694976 6.580000e-86 327.0
31 TraesCS5D01G213700 chr7A 83.591 323 47 6 2136 2454 497753477 497753157 5.160000e-77 298.0
32 TraesCS5D01G213700 chr7A 81.290 310 51 6 2136 2440 105682321 105682628 6.820000e-61 244.0
33 TraesCS5D01G213700 chr7A 80.189 212 38 4 1836 2045 40456638 40456847 3.290000e-34 156.0
34 TraesCS5D01G213700 chr4B 83.810 315 46 5 2142 2451 545151095 545151409 6.670000e-76 294.0
35 TraesCS5D01G213700 chr4B 83.438 320 44 8 2138 2454 638454170 638453857 3.110000e-74 289.0
36 TraesCS5D01G213700 chr7B 84.746 177 19 4 2138 2310 627616300 627616472 1.170000e-38 171.0
37 TraesCS5D01G213700 chr7B 88.889 54 3 3 2091 2144 465785254 465785304 2.050000e-06 63.9
38 TraesCS5D01G213700 chr3B 80.476 210 40 1 1836 2045 624665687 624665895 2.540000e-35 159.0
39 TraesCS5D01G213700 chr3A 79.902 204 37 4 1836 2037 294477546 294477747 1.980000e-31 147.0
40 TraesCS5D01G213700 chr3A 87.395 119 14 1 1836 1954 347663131 347663014 4.280000e-28 135.0
41 TraesCS5D01G213700 chr6A 86.885 61 8 0 1 61 102029556 102029616 4.400000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G213700 chr5D 322973559 322976026 2467 True 4558 4558 100.000 1 2468 1 chr5D.!!$R1 2467
1 TraesCS5D01G213700 chr5A 419691639 419693578 1939 True 2237 2237 87.481 461 2454 1 chr5A.!!$R1 1993
2 TraesCS5D01G213700 chr5B 375178264 375179578 1314 True 1454 1454 87.323 487 1765 1 chr5B.!!$R2 1278

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
123 124 0.036765 TGCACCCGGATGAACAGTAC 60.037 55.0 0.0 0.0 0.0 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1479 1533 0.24912 CTACAGACGGGTGCCATGAA 59.751 55.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.907222 GGATACAAAATTGCCCAATGAAATAT 57.093 30.769 0.00 0.00 0.00 1.28
27 28 9.341078 GGATACAAAATTGCCCAATGAAATATT 57.659 29.630 0.00 0.00 0.00 1.28
30 31 7.750769 ACAAAATTGCCCAATGAAATATTTCG 58.249 30.769 20.45 9.09 40.01 3.46
31 32 5.989551 AATTGCCCAATGAAATATTTCGC 57.010 34.783 20.45 17.22 40.01 4.70
32 33 4.462508 TTGCCCAATGAAATATTTCGCA 57.537 36.364 20.45 19.18 40.01 5.10
33 34 3.779759 TGCCCAATGAAATATTTCGCAC 58.220 40.909 20.45 9.22 40.01 5.34
34 35 3.194329 TGCCCAATGAAATATTTCGCACA 59.806 39.130 20.45 11.24 40.01 4.57
35 36 4.141981 TGCCCAATGAAATATTTCGCACAT 60.142 37.500 20.45 8.58 40.01 3.21
36 37 4.209703 GCCCAATGAAATATTTCGCACATG 59.790 41.667 20.45 14.28 40.01 3.21
37 38 5.350633 CCCAATGAAATATTTCGCACATGT 58.649 37.500 20.45 0.00 40.01 3.21
38 39 5.811613 CCCAATGAAATATTTCGCACATGTT 59.188 36.000 20.45 6.47 40.01 2.71
39 40 6.019640 CCCAATGAAATATTTCGCACATGTTC 60.020 38.462 20.45 0.00 40.01 3.18
40 41 6.530887 CCAATGAAATATTTCGCACATGTTCA 59.469 34.615 20.45 3.14 40.01 3.18
41 42 7.063191 CCAATGAAATATTTCGCACATGTTCAA 59.937 33.333 20.45 2.07 40.01 2.69
42 43 8.597227 CAATGAAATATTTCGCACATGTTCAAT 58.403 29.630 20.45 4.12 40.01 2.57
43 44 8.706492 ATGAAATATTTCGCACATGTTCAATT 57.294 26.923 20.45 0.00 40.01 2.32
44 45 8.172159 TGAAATATTTCGCACATGTTCAATTC 57.828 30.769 20.45 0.00 40.01 2.17
45 46 7.275341 TGAAATATTTCGCACATGTTCAATTCC 59.725 33.333 20.45 0.00 40.01 3.01
46 47 3.296322 TTTCGCACATGTTCAATTCCC 57.704 42.857 0.00 0.00 0.00 3.97
47 48 1.902938 TCGCACATGTTCAATTCCCA 58.097 45.000 0.00 0.00 0.00 4.37
48 49 2.234143 TCGCACATGTTCAATTCCCAA 58.766 42.857 0.00 0.00 0.00 4.12
49 50 2.625314 TCGCACATGTTCAATTCCCAAA 59.375 40.909 0.00 0.00 0.00 3.28
50 51 2.988493 CGCACATGTTCAATTCCCAAAG 59.012 45.455 0.00 0.00 0.00 2.77
51 52 2.738314 GCACATGTTCAATTCCCAAAGC 59.262 45.455 0.00 0.00 0.00 3.51
52 53 3.803021 GCACATGTTCAATTCCCAAAGCA 60.803 43.478 0.00 0.00 0.00 3.91
53 54 4.378774 CACATGTTCAATTCCCAAAGCAA 58.621 39.130 0.00 0.00 0.00 3.91
54 55 4.998672 CACATGTTCAATTCCCAAAGCAAT 59.001 37.500 0.00 0.00 0.00 3.56
55 56 5.470777 CACATGTTCAATTCCCAAAGCAATT 59.529 36.000 0.00 0.00 0.00 2.32
56 57 6.649973 CACATGTTCAATTCCCAAAGCAATTA 59.350 34.615 0.00 0.00 0.00 1.40
57 58 6.875195 ACATGTTCAATTCCCAAAGCAATTAG 59.125 34.615 0.00 0.00 0.00 1.73
58 59 6.418057 TGTTCAATTCCCAAAGCAATTAGT 57.582 33.333 0.00 0.00 0.00 2.24
59 60 6.222389 TGTTCAATTCCCAAAGCAATTAGTG 58.778 36.000 0.00 0.00 0.00 2.74
60 61 6.183360 TGTTCAATTCCCAAAGCAATTAGTGT 60.183 34.615 0.00 0.00 0.00 3.55
61 62 7.014711 TGTTCAATTCCCAAAGCAATTAGTGTA 59.985 33.333 0.00 0.00 0.00 2.90
62 63 7.156876 TCAATTCCCAAAGCAATTAGTGTAG 57.843 36.000 0.00 0.00 0.00 2.74
63 64 5.582689 ATTCCCAAAGCAATTAGTGTAGC 57.417 39.130 0.00 0.00 0.00 3.58
64 65 3.352648 TCCCAAAGCAATTAGTGTAGCC 58.647 45.455 0.00 0.00 0.00 3.93
65 66 3.010138 TCCCAAAGCAATTAGTGTAGCCT 59.990 43.478 0.00 0.00 0.00 4.58
66 67 3.378427 CCCAAAGCAATTAGTGTAGCCTC 59.622 47.826 0.00 0.00 0.00 4.70
67 68 4.265073 CCAAAGCAATTAGTGTAGCCTCT 58.735 43.478 0.00 0.00 0.00 3.69
68 69 4.333926 CCAAAGCAATTAGTGTAGCCTCTC 59.666 45.833 0.00 0.00 0.00 3.20
69 70 5.181748 CAAAGCAATTAGTGTAGCCTCTCT 58.818 41.667 0.00 0.00 0.00 3.10
70 71 5.428184 AAGCAATTAGTGTAGCCTCTCTT 57.572 39.130 0.00 0.00 0.00 2.85
71 72 5.428184 AGCAATTAGTGTAGCCTCTCTTT 57.572 39.130 0.00 0.00 0.00 2.52
72 73 5.810095 AGCAATTAGTGTAGCCTCTCTTTT 58.190 37.500 0.00 0.00 0.00 2.27
73 74 5.645497 AGCAATTAGTGTAGCCTCTCTTTTG 59.355 40.000 0.00 0.00 0.00 2.44
74 75 5.412904 GCAATTAGTGTAGCCTCTCTTTTGT 59.587 40.000 0.00 0.00 0.00 2.83
75 76 6.621596 GCAATTAGTGTAGCCTCTCTTTTGTG 60.622 42.308 0.00 0.00 0.00 3.33
76 77 3.409026 AGTGTAGCCTCTCTTTTGTGG 57.591 47.619 0.00 0.00 0.00 4.17
77 78 2.039084 AGTGTAGCCTCTCTTTTGTGGG 59.961 50.000 0.00 0.00 0.00 4.61
78 79 1.351017 TGTAGCCTCTCTTTTGTGGGG 59.649 52.381 0.00 0.00 36.67 4.96
79 80 1.628846 GTAGCCTCTCTTTTGTGGGGA 59.371 52.381 0.00 0.00 35.65 4.81
80 81 0.695347 AGCCTCTCTTTTGTGGGGAG 59.305 55.000 0.00 0.00 35.65 4.30
81 82 0.322906 GCCTCTCTTTTGTGGGGAGG 60.323 60.000 5.35 5.35 44.41 4.30
82 83 0.322906 CCTCTCTTTTGTGGGGAGGC 60.323 60.000 0.00 0.00 35.65 4.70
83 84 0.674895 CTCTCTTTTGTGGGGAGGCG 60.675 60.000 0.00 0.00 0.00 5.52
84 85 1.073199 CTCTTTTGTGGGGAGGCGT 59.927 57.895 0.00 0.00 0.00 5.68
85 86 0.537371 CTCTTTTGTGGGGAGGCGTT 60.537 55.000 0.00 0.00 0.00 4.84
86 87 0.106419 TCTTTTGTGGGGAGGCGTTT 60.106 50.000 0.00 0.00 0.00 3.60
87 88 0.750249 CTTTTGTGGGGAGGCGTTTT 59.250 50.000 0.00 0.00 0.00 2.43
88 89 0.461961 TTTTGTGGGGAGGCGTTTTG 59.538 50.000 0.00 0.00 0.00 2.44
89 90 1.395826 TTTGTGGGGAGGCGTTTTGG 61.396 55.000 0.00 0.00 0.00 3.28
90 91 3.680786 GTGGGGAGGCGTTTTGGC 61.681 66.667 0.00 0.00 45.27 4.52
99 100 3.361977 CGTTTTGGCTCCCGGGTG 61.362 66.667 22.86 20.53 0.00 4.61
100 101 3.680786 GTTTTGGCTCCCGGGTGC 61.681 66.667 34.54 34.54 0.00 5.01
101 102 4.211330 TTTTGGCTCCCGGGTGCA 62.211 61.111 39.91 26.58 36.47 4.57
102 103 3.521765 TTTTGGCTCCCGGGTGCAT 62.522 57.895 39.91 0.00 36.47 3.96
103 104 3.521765 TTTGGCTCCCGGGTGCATT 62.522 57.895 39.91 0.00 36.47 3.56
104 105 3.521765 TTGGCTCCCGGGTGCATTT 62.522 57.895 39.91 0.00 36.47 2.32
105 106 3.451894 GGCTCCCGGGTGCATTTG 61.452 66.667 39.91 16.27 36.47 2.32
106 107 4.133796 GCTCCCGGGTGCATTTGC 62.134 66.667 36.48 18.75 42.50 3.68
116 117 3.602103 GCATTTGCACCCGGATGA 58.398 55.556 0.00 0.00 41.59 2.92
117 118 1.889454 GCATTTGCACCCGGATGAA 59.111 52.632 0.00 0.00 41.59 2.57
118 119 0.458370 GCATTTGCACCCGGATGAAC 60.458 55.000 0.00 0.00 41.59 3.18
119 120 0.887247 CATTTGCACCCGGATGAACA 59.113 50.000 0.00 0.00 0.00 3.18
120 121 1.135315 CATTTGCACCCGGATGAACAG 60.135 52.381 0.00 0.00 0.00 3.16
121 122 0.179004 TTTGCACCCGGATGAACAGT 60.179 50.000 0.00 0.00 0.00 3.55
122 123 0.687920 TTGCACCCGGATGAACAGTA 59.312 50.000 0.00 0.00 0.00 2.74
123 124 0.036765 TGCACCCGGATGAACAGTAC 60.037 55.000 0.00 0.00 0.00 2.73
124 125 0.743345 GCACCCGGATGAACAGTACC 60.743 60.000 0.00 0.00 0.00 3.34
125 126 0.902531 CACCCGGATGAACAGTACCT 59.097 55.000 0.73 0.00 0.00 3.08
126 127 2.104967 CACCCGGATGAACAGTACCTA 58.895 52.381 0.73 0.00 0.00 3.08
127 128 2.498481 CACCCGGATGAACAGTACCTAA 59.502 50.000 0.73 0.00 0.00 2.69
128 129 3.055675 CACCCGGATGAACAGTACCTAAA 60.056 47.826 0.73 0.00 0.00 1.85
129 130 3.583966 ACCCGGATGAACAGTACCTAAAA 59.416 43.478 0.73 0.00 0.00 1.52
130 131 4.041938 ACCCGGATGAACAGTACCTAAAAA 59.958 41.667 0.73 0.00 0.00 1.94
191 192 8.783833 ATTATAGATGATCATGTTGGTGTAGC 57.216 34.615 14.30 0.00 0.00 3.58
192 193 4.492494 AGATGATCATGTTGGTGTAGCA 57.508 40.909 14.30 0.00 0.00 3.49
193 194 4.847198 AGATGATCATGTTGGTGTAGCAA 58.153 39.130 14.30 0.00 0.00 3.91
194 195 5.255687 AGATGATCATGTTGGTGTAGCAAA 58.744 37.500 14.30 0.00 0.00 3.68
195 196 4.764679 TGATCATGTTGGTGTAGCAAAC 57.235 40.909 0.00 0.00 0.00 2.93
196 197 4.140536 TGATCATGTTGGTGTAGCAAACA 58.859 39.130 0.00 0.81 44.41 2.83
199 200 2.791383 TGTTGGTGTAGCAAACATGC 57.209 45.000 0.00 0.00 41.10 4.06
200 201 2.892852 ATGTTGGTGTAGCAAACATGCT 59.107 40.909 8.53 8.53 46.87 3.79
201 202 2.692557 TGTTGGTGTAGCAAACATGCTT 59.307 40.909 8.79 0.00 43.52 3.91
202 203 3.052036 GTTGGTGTAGCAAACATGCTTG 58.948 45.455 8.79 4.42 43.52 4.01
203 204 2.580962 TGGTGTAGCAAACATGCTTGA 58.419 42.857 12.98 0.00 43.52 3.02
204 205 2.293122 TGGTGTAGCAAACATGCTTGAC 59.707 45.455 12.98 3.67 43.52 3.18
205 206 2.293122 GGTGTAGCAAACATGCTTGACA 59.707 45.455 12.98 6.19 43.52 3.58
206 207 3.243367 GGTGTAGCAAACATGCTTGACAA 60.243 43.478 12.98 0.00 43.52 3.18
207 208 4.358851 GTGTAGCAAACATGCTTGACAAA 58.641 39.130 12.98 0.00 43.52 2.83
208 209 4.984161 GTGTAGCAAACATGCTTGACAAAT 59.016 37.500 12.98 0.00 43.52 2.32
209 210 5.463061 GTGTAGCAAACATGCTTGACAAATT 59.537 36.000 12.98 0.00 43.52 1.82
210 211 6.018832 GTGTAGCAAACATGCTTGACAAATTT 60.019 34.615 12.98 0.00 43.52 1.82
211 212 5.662211 AGCAAACATGCTTGACAAATTTC 57.338 34.783 12.98 0.00 43.52 2.17
212 213 5.117584 AGCAAACATGCTTGACAAATTTCA 58.882 33.333 12.98 0.00 43.52 2.69
213 214 5.761234 AGCAAACATGCTTGACAAATTTCAT 59.239 32.000 12.98 0.00 43.52 2.57
214 215 5.849081 GCAAACATGCTTGACAAATTTCATG 59.151 36.000 12.98 11.64 37.78 3.07
215 216 5.600908 AACATGCTTGACAAATTTCATGC 57.399 34.783 6.60 11.27 43.59 4.06
218 219 4.587584 TGCTTGACAAATTTCATGCAGA 57.412 36.364 13.73 0.00 46.25 4.26
219 220 4.946445 TGCTTGACAAATTTCATGCAGAA 58.054 34.783 13.73 0.00 46.25 3.02
220 221 4.746115 TGCTTGACAAATTTCATGCAGAAC 59.254 37.500 13.73 0.00 46.25 3.01
221 222 4.143473 GCTTGACAAATTTCATGCAGAACG 60.143 41.667 11.26 0.00 43.08 3.95
222 223 3.899734 TGACAAATTTCATGCAGAACGG 58.100 40.909 0.00 0.00 35.56 4.44
223 224 3.567585 TGACAAATTTCATGCAGAACGGA 59.432 39.130 0.00 0.00 35.56 4.69
224 225 4.161333 GACAAATTTCATGCAGAACGGAG 58.839 43.478 0.00 0.00 35.56 4.63
225 226 2.919229 CAAATTTCATGCAGAACGGAGC 59.081 45.455 0.00 0.00 35.56 4.70
226 227 1.825090 ATTTCATGCAGAACGGAGCA 58.175 45.000 0.00 0.00 45.92 4.26
227 228 1.159285 TTTCATGCAGAACGGAGCAG 58.841 50.000 0.00 0.00 44.94 4.24
228 229 1.300971 TTCATGCAGAACGGAGCAGC 61.301 55.000 0.00 0.00 44.94 5.25
229 230 2.816958 ATGCAGAACGGAGCAGCG 60.817 61.111 0.00 0.00 44.94 5.18
232 233 3.114616 CAGAACGGAGCAGCGGTG 61.115 66.667 10.98 10.98 0.00 4.94
233 234 3.616721 AGAACGGAGCAGCGGTGT 61.617 61.111 17.07 2.78 0.00 4.16
234 235 2.665185 GAACGGAGCAGCGGTGTT 60.665 61.111 17.07 10.65 0.00 3.32
235 236 2.203153 AACGGAGCAGCGGTGTTT 60.203 55.556 17.07 4.91 0.00 2.83
236 237 2.171489 GAACGGAGCAGCGGTGTTTC 62.171 60.000 17.07 8.22 0.00 2.78
237 238 3.777925 CGGAGCAGCGGTGTTTCG 61.778 66.667 17.60 17.60 28.62 3.46
238 239 2.665185 GGAGCAGCGGTGTTTCGT 60.665 61.111 17.07 0.00 0.00 3.85
239 240 2.668280 GGAGCAGCGGTGTTTCGTC 61.668 63.158 17.07 5.62 0.00 4.20
240 241 3.000080 GAGCAGCGGTGTTTCGTCG 62.000 63.158 17.07 0.00 0.00 5.12
241 242 4.072088 GCAGCGGTGTTTCGTCGG 62.072 66.667 17.07 0.00 0.00 4.79
242 243 2.660552 CAGCGGTGTTTCGTCGGT 60.661 61.111 6.41 0.00 34.90 4.69
243 244 2.660552 AGCGGTGTTTCGTCGGTG 60.661 61.111 0.00 0.00 33.28 4.94
244 245 2.659244 GCGGTGTTTCGTCGGTGA 60.659 61.111 0.00 0.00 0.00 4.02
245 246 2.239124 GCGGTGTTTCGTCGGTGAA 61.239 57.895 0.00 0.00 0.00 3.18
246 247 1.764180 GCGGTGTTTCGTCGGTGAAA 61.764 55.000 0.00 0.00 35.58 2.69
247 248 0.651551 CGGTGTTTCGTCGGTGAAAA 59.348 50.000 4.86 0.00 39.40 2.29
248 249 1.062294 CGGTGTTTCGTCGGTGAAAAA 59.938 47.619 4.86 0.00 39.40 1.94
266 267 4.729227 AAAAACGAACTTTGGGTGACAT 57.271 36.364 0.00 0.00 0.00 3.06
267 268 4.729227 AAAACGAACTTTGGGTGACATT 57.271 36.364 0.00 0.00 0.00 2.71
268 269 4.729227 AAACGAACTTTGGGTGACATTT 57.271 36.364 0.00 0.00 0.00 2.32
269 270 3.708563 ACGAACTTTGGGTGACATTTG 57.291 42.857 0.00 0.00 0.00 2.32
270 271 2.360801 ACGAACTTTGGGTGACATTTGG 59.639 45.455 0.00 0.00 0.00 3.28
271 272 2.360801 CGAACTTTGGGTGACATTTGGT 59.639 45.455 0.00 0.00 0.00 3.67
285 286 6.089249 GACATTTGGTCTTTGATTTGTCCT 57.911 37.500 0.00 0.00 43.46 3.85
286 287 6.484364 ACATTTGGTCTTTGATTTGTCCTT 57.516 33.333 0.00 0.00 0.00 3.36
287 288 6.888105 ACATTTGGTCTTTGATTTGTCCTTT 58.112 32.000 0.00 0.00 0.00 3.11
288 289 7.337938 ACATTTGGTCTTTGATTTGTCCTTTT 58.662 30.769 0.00 0.00 0.00 2.27
289 290 7.828717 ACATTTGGTCTTTGATTTGTCCTTTTT 59.171 29.630 0.00 0.00 0.00 1.94
290 291 7.608308 TTTGGTCTTTGATTTGTCCTTTTTG 57.392 32.000 0.00 0.00 0.00 2.44
291 292 5.115480 TGGTCTTTGATTTGTCCTTTTTGC 58.885 37.500 0.00 0.00 0.00 3.68
292 293 4.209080 GGTCTTTGATTTGTCCTTTTTGCG 59.791 41.667 0.00 0.00 0.00 4.85
293 294 3.801594 TCTTTGATTTGTCCTTTTTGCGC 59.198 39.130 0.00 0.00 0.00 6.09
294 295 2.879002 TGATTTGTCCTTTTTGCGCA 57.121 40.000 5.66 5.66 0.00 6.09
295 296 2.741612 TGATTTGTCCTTTTTGCGCAG 58.258 42.857 11.31 0.00 0.00 5.18
296 297 2.061028 GATTTGTCCTTTTTGCGCAGG 58.939 47.619 11.31 8.90 0.00 4.85
297 298 0.529555 TTTGTCCTTTTTGCGCAGGC 60.530 50.000 11.31 0.00 40.52 4.85
298 299 2.049156 GTCCTTTTTGCGCAGGCC 60.049 61.111 11.31 0.00 38.85 5.19
299 300 2.520500 TCCTTTTTGCGCAGGCCA 60.521 55.556 11.31 0.00 38.85 5.36
300 301 2.130426 TCCTTTTTGCGCAGGCCAA 61.130 52.632 11.31 0.00 38.85 4.52
301 302 1.227497 CCTTTTTGCGCAGGCCAAA 60.227 52.632 11.31 5.40 38.85 3.28
302 303 0.813210 CCTTTTTGCGCAGGCCAAAA 60.813 50.000 11.31 13.60 40.30 2.44
303 304 1.228533 CTTTTTGCGCAGGCCAAAAT 58.771 45.000 11.31 0.00 41.28 1.82
304 305 0.942962 TTTTTGCGCAGGCCAAAATG 59.057 45.000 11.31 0.00 38.43 2.32
305 306 1.505477 TTTTGCGCAGGCCAAAATGC 61.505 50.000 11.31 4.79 38.85 3.56
306 307 2.380433 TTTGCGCAGGCCAAAATGCT 62.380 50.000 11.31 0.00 40.34 3.79
307 308 2.047939 GCGCAGGCCAAAATGCTT 60.048 55.556 5.01 0.00 40.34 3.91
308 309 1.215117 GCGCAGGCCAAAATGCTTA 59.785 52.632 5.01 0.00 40.34 3.09
309 310 0.389687 GCGCAGGCCAAAATGCTTAA 60.390 50.000 5.01 0.00 40.34 1.85
310 311 1.349234 CGCAGGCCAAAATGCTTAAC 58.651 50.000 5.01 0.00 40.34 2.01
311 312 1.067635 CGCAGGCCAAAATGCTTAACT 60.068 47.619 5.01 0.00 40.34 2.24
312 313 2.610232 CGCAGGCCAAAATGCTTAACTT 60.610 45.455 5.01 0.00 40.34 2.66
313 314 3.402110 GCAGGCCAAAATGCTTAACTTT 58.598 40.909 5.01 0.00 39.38 2.66
314 315 3.814842 GCAGGCCAAAATGCTTAACTTTT 59.185 39.130 5.01 0.00 39.38 2.27
315 316 4.275689 GCAGGCCAAAATGCTTAACTTTTT 59.724 37.500 5.01 0.00 39.38 1.94
337 338 8.865590 TTTTTGTCTCAAAATTTACAGGTAGC 57.134 30.769 8.18 0.00 0.00 3.58
338 339 7.575414 TTTGTCTCAAAATTTACAGGTAGCA 57.425 32.000 0.00 0.00 0.00 3.49
339 340 7.759489 TTGTCTCAAAATTTACAGGTAGCAT 57.241 32.000 0.00 0.00 0.00 3.79
340 341 7.759489 TGTCTCAAAATTTACAGGTAGCATT 57.241 32.000 0.00 0.00 0.00 3.56
341 342 8.177119 TGTCTCAAAATTTACAGGTAGCATTT 57.823 30.769 0.00 0.00 0.00 2.32
342 343 8.081633 TGTCTCAAAATTTACAGGTAGCATTTG 58.918 33.333 0.00 0.00 0.00 2.32
343 344 8.082242 GTCTCAAAATTTACAGGTAGCATTTGT 58.918 33.333 0.00 0.00 0.00 2.83
344 345 9.290988 TCTCAAAATTTACAGGTAGCATTTGTA 57.709 29.630 0.00 0.00 0.00 2.41
346 347 9.853555 TCAAAATTTACAGGTAGCATTTGTATG 57.146 29.630 0.00 0.00 34.76 2.39
347 348 9.638239 CAAAATTTACAGGTAGCATTTGTATGT 57.362 29.630 0.00 0.00 34.12 2.29
348 349 9.638239 AAAATTTACAGGTAGCATTTGTATGTG 57.362 29.630 0.00 0.00 34.12 3.21
349 350 8.574251 AATTTACAGGTAGCATTTGTATGTGA 57.426 30.769 0.00 0.00 34.12 3.58
350 351 6.978343 TTACAGGTAGCATTTGTATGTGAC 57.022 37.500 0.00 0.00 34.12 3.67
351 352 4.905429 ACAGGTAGCATTTGTATGTGACA 58.095 39.130 0.00 0.00 35.78 3.58
352 353 5.312895 ACAGGTAGCATTTGTATGTGACAA 58.687 37.500 0.00 0.00 46.56 3.18
417 418 8.498054 AGATCAAATCGAATGAGTAATTGTGT 57.502 30.769 9.71 0.00 0.00 3.72
418 419 9.599866 AGATCAAATCGAATGAGTAATTGTGTA 57.400 29.630 9.71 0.00 0.00 2.90
425 426 8.515473 TCGAATGAGTAATTGTGTATTATCCG 57.485 34.615 0.00 0.00 31.61 4.18
426 427 8.139350 TCGAATGAGTAATTGTGTATTATCCGT 58.861 33.333 0.00 0.00 31.61 4.69
427 428 8.761497 CGAATGAGTAATTGTGTATTATCCGTT 58.239 33.333 0.00 0.00 31.61 4.44
429 430 9.607988 AATGAGTAATTGTGTATTATCCGTTCA 57.392 29.630 0.00 0.00 31.61 3.18
430 431 9.607988 ATGAGTAATTGTGTATTATCCGTTCAA 57.392 29.630 0.00 0.00 31.61 2.69
431 432 9.438228 TGAGTAATTGTGTATTATCCGTTCAAA 57.562 29.630 0.00 0.00 31.61 2.69
438 439 9.453325 TTGTGTATTATCCGTTCAAAAGAAAAC 57.547 29.630 0.00 0.00 0.00 2.43
439 440 8.842280 TGTGTATTATCCGTTCAAAAGAAAACT 58.158 29.630 0.00 0.00 0.00 2.66
440 441 9.326339 GTGTATTATCCGTTCAAAAGAAAACTC 57.674 33.333 0.00 0.00 0.00 3.01
441 442 9.280174 TGTATTATCCGTTCAAAAGAAAACTCT 57.720 29.630 0.00 0.00 0.00 3.24
445 446 9.863845 TTATCCGTTCAAAAGAAAACTCTTTTT 57.136 25.926 9.56 0.00 44.64 1.94
458 459 8.274851 GAAAACTCTTTTTCACAGAGCATAAC 57.725 34.615 5.23 0.00 46.84 1.89
459 460 7.573968 AAACTCTTTTTCACAGAGCATAACT 57.426 32.000 0.00 0.00 41.49 2.24
463 464 8.940952 ACTCTTTTTCACAGAGCATAACTAATC 58.059 33.333 0.00 0.00 41.49 1.75
512 513 0.963225 TCAAACTGACCCGATCGTCA 59.037 50.000 15.09 11.12 40.44 4.35
526 527 3.643763 GATCGTCATGACATACCCAGAC 58.356 50.000 24.93 4.62 0.00 3.51
533 534 1.548719 TGACATACCCAGACCTCGTTG 59.451 52.381 0.00 0.00 0.00 4.10
573 574 3.135994 ACACGATGTGTTTGTTAGGGTC 58.864 45.455 0.00 0.00 45.08 4.46
626 627 1.672356 CCACTCCAAAGACCAGGCG 60.672 63.158 0.00 0.00 0.00 5.52
633 634 2.280552 AAAGACCAGGCGGCTCGTA 61.281 57.895 9.32 0.00 34.57 3.43
634 635 1.823169 AAAGACCAGGCGGCTCGTAA 61.823 55.000 9.32 0.00 34.57 3.18
635 636 1.823169 AAGACCAGGCGGCTCGTAAA 61.823 55.000 9.32 0.00 34.57 2.01
636 637 1.810030 GACCAGGCGGCTCGTAAAG 60.810 63.158 9.32 0.00 34.57 1.85
638 639 3.195698 CAGGCGGCTCGTAAAGGC 61.196 66.667 9.32 0.00 46.88 4.35
644 645 3.379650 GGCTCGTAAAGGCTATGCA 57.620 52.632 0.00 0.00 46.82 3.96
645 646 1.221414 GGCTCGTAAAGGCTATGCAG 58.779 55.000 0.00 0.00 46.82 4.41
648 649 2.474816 CTCGTAAAGGCTATGCAGTCC 58.525 52.381 0.00 0.00 0.00 3.85
753 760 0.306840 CGCGCTCCGTGTAGAATAGA 59.693 55.000 5.56 0.00 32.40 1.98
793 800 2.058001 ATCTCCGCCACGTCCATCA 61.058 57.895 0.00 0.00 0.00 3.07
794 801 1.402896 ATCTCCGCCACGTCCATCAT 61.403 55.000 0.00 0.00 0.00 2.45
795 802 1.592669 CTCCGCCACGTCCATCATC 60.593 63.158 0.00 0.00 0.00 2.92
796 803 2.588877 CCGCCACGTCCATCATCC 60.589 66.667 0.00 0.00 0.00 3.51
831 839 1.303643 GGACAAGCCCACCTTCCTG 60.304 63.158 0.00 0.00 0.00 3.86
932 980 0.507358 GCTCTTCGTCGACCAACAAC 59.493 55.000 10.58 0.00 0.00 3.32
987 1037 3.705638 CAGCACGAGCACACCACG 61.706 66.667 7.77 0.00 45.49 4.94
1310 1364 2.111999 CTGGTGTCCGGCAAGAAGGA 62.112 60.000 0.00 0.00 0.00 3.36
1473 1527 3.192422 CCATCTTCGAGGCTTAGATCGAT 59.808 47.826 0.00 0.00 46.35 3.59
1474 1528 4.411327 CATCTTCGAGGCTTAGATCGATC 58.589 47.826 17.91 17.91 46.35 3.69
1475 1529 3.477530 TCTTCGAGGCTTAGATCGATCA 58.522 45.455 26.47 10.44 46.35 2.92
1476 1530 4.075682 TCTTCGAGGCTTAGATCGATCAT 58.924 43.478 26.47 14.08 46.35 2.45
1477 1531 3.839051 TCGAGGCTTAGATCGATCATG 57.161 47.619 26.47 16.07 42.61 3.07
1478 1532 3.412386 TCGAGGCTTAGATCGATCATGA 58.588 45.455 26.47 9.20 42.61 3.07
1479 1533 4.013050 TCGAGGCTTAGATCGATCATGAT 58.987 43.478 26.47 8.25 42.61 2.45
1487 1541 4.281898 AGATCGATCATGATTCATGGCA 57.718 40.909 26.47 8.39 41.66 4.92
1515 1569 6.294620 CGTCTGTAGGGTAGAATAGGAAATCC 60.295 46.154 0.00 0.00 0.00 3.01
1516 1570 6.553852 GTCTGTAGGGTAGAATAGGAAATCCA 59.446 42.308 1.67 0.00 38.89 3.41
1593 1647 2.432510 AGCAAGGAGAGAAGGTATTCGG 59.567 50.000 0.00 0.00 40.58 4.30
1607 1662 3.928375 GGTATTCGGTTGACGTGTACATT 59.072 43.478 0.00 0.00 44.69 2.71
1619 1674 6.707711 TGACGTGTACATTTGTCTTGTAAAC 58.292 36.000 19.83 0.00 35.38 2.01
1666 1721 7.102847 AGGTTGTCAGAGCTAGAAATAGTAC 57.897 40.000 0.00 0.00 0.00 2.73
1667 1722 6.893005 AGGTTGTCAGAGCTAGAAATAGTACT 59.107 38.462 0.00 0.00 0.00 2.73
1668 1723 8.053963 AGGTTGTCAGAGCTAGAAATAGTACTA 58.946 37.037 4.77 4.77 0.00 1.82
1699 1767 2.434702 CCTAAATGCTACTCCCTCCGTT 59.565 50.000 0.00 0.00 0.00 4.44
1744 1812 9.434420 AGTCAAATTTCACAAACTTTGATCAAA 57.566 25.926 19.45 19.45 39.15 2.69
1769 1837 6.737608 TGTATAGGGAAAAACATTTAGGCCT 58.262 36.000 11.78 11.78 0.00 5.19
1770 1838 6.831868 TGTATAGGGAAAAACATTTAGGCCTC 59.168 38.462 9.68 0.00 0.00 4.70
1771 1839 3.441101 AGGGAAAAACATTTAGGCCTCC 58.559 45.455 9.68 0.00 0.00 4.30
1772 1840 3.077543 AGGGAAAAACATTTAGGCCTCCT 59.922 43.478 9.68 0.93 37.71 3.69
1773 1841 3.838317 GGGAAAAACATTTAGGCCTCCTT 59.162 43.478 9.68 0.00 34.61 3.36
1774 1842 4.286032 GGGAAAAACATTTAGGCCTCCTTT 59.714 41.667 9.68 0.00 34.61 3.11
1775 1843 5.237815 GGAAAAACATTTAGGCCTCCTTTG 58.762 41.667 9.68 5.90 34.61 2.77
1776 1844 4.890158 AAAACATTTAGGCCTCCTTTGG 57.110 40.909 9.68 0.00 34.61 3.28
1777 1845 3.542969 AACATTTAGGCCTCCTTTGGT 57.457 42.857 9.68 0.00 34.61 3.67
1778 1846 3.087370 ACATTTAGGCCTCCTTTGGTC 57.913 47.619 9.68 0.00 34.61 4.02
1779 1847 2.291605 ACATTTAGGCCTCCTTTGGTCC 60.292 50.000 9.68 0.00 34.61 4.46
1780 1848 1.755200 TTTAGGCCTCCTTTGGTCCT 58.245 50.000 9.68 0.00 37.39 3.85
1781 1849 1.755200 TTAGGCCTCCTTTGGTCCTT 58.245 50.000 9.68 0.00 35.95 3.36
1782 1850 2.653543 TAGGCCTCCTTTGGTCCTTA 57.346 50.000 9.68 0.00 35.95 2.69
1783 1851 1.290134 AGGCCTCCTTTGGTCCTTAG 58.710 55.000 0.00 0.00 32.39 2.18
1784 1852 0.256177 GGCCTCCTTTGGTCCTTAGG 59.744 60.000 0.00 0.00 0.00 2.69
1785 1853 0.256177 GCCTCCTTTGGTCCTTAGGG 59.744 60.000 0.00 0.00 0.00 3.53
1795 1863 6.724441 CCTTTGGTCCTTAGGGTAGAAAAATT 59.276 38.462 0.00 0.00 0.00 1.82
1798 1866 9.831682 TTTGGTCCTTAGGGTAGAAAAATTATT 57.168 29.630 0.00 0.00 0.00 1.40
1800 1868 7.837187 TGGTCCTTAGGGTAGAAAAATTATTGG 59.163 37.037 0.00 0.00 0.00 3.16
1957 2035 8.657387 TCCTATTAAATGTGGAGGATAGAGAG 57.343 38.462 0.00 0.00 31.25 3.20
1970 2048 7.132128 GGAGGATAGAGAGAATCCCTTCATAT 58.868 42.308 0.00 0.00 43.44 1.78
2001 2079 8.495260 AGGATTCTATTCCTACAAACTAAAGGG 58.505 37.037 0.00 0.00 44.50 3.95
2010 2088 6.499350 TCCTACAAACTAAAGGGCTCTAAAGA 59.501 38.462 2.22 0.00 0.00 2.52
2013 2091 7.891498 ACAAACTAAAGGGCTCTAAAGAAAA 57.109 32.000 2.22 0.00 0.00 2.29
2014 2092 7.713750 ACAAACTAAAGGGCTCTAAAGAAAAC 58.286 34.615 2.22 0.00 0.00 2.43
2018 2096 8.167605 ACTAAAGGGCTCTAAAGAAAACTTTC 57.832 34.615 2.22 0.00 37.45 2.62
2024 2102 8.782927 AGGGCTCTAAAGAAAACTTTCCTATAT 58.217 33.333 0.00 0.00 37.92 0.86
2069 2147 2.871453 TCAAACCAAAGGAGGCCTTAC 58.129 47.619 6.77 2.89 43.92 2.34
2070 2148 2.175931 TCAAACCAAAGGAGGCCTTACA 59.824 45.455 6.77 0.00 43.92 2.41
2071 2149 3.165071 CAAACCAAAGGAGGCCTTACAT 58.835 45.455 6.77 0.00 43.92 2.29
2076 2155 4.291249 ACCAAAGGAGGCCTTACATTTAGA 59.709 41.667 6.77 0.00 43.92 2.10
2079 2158 6.183360 CCAAAGGAGGCCTTACATTTAGAATG 60.183 42.308 6.77 0.00 43.92 2.67
2101 2180 9.546909 GAATGCCAAACATATATTCATCGTAAG 57.453 33.333 0.00 0.00 38.34 2.34
2114 2193 2.068834 TCGTAAGATGTCCTCCCTCC 57.931 55.000 0.00 0.00 45.01 4.30
2159 2238 0.527817 GCATCTACGGACGGACTTGG 60.528 60.000 0.00 0.00 0.00 3.61
2160 2239 0.527817 CATCTACGGACGGACTTGGC 60.528 60.000 0.00 0.00 0.00 4.52
2170 2249 2.941210 GGACTTGGCAAATCCGACA 58.059 52.632 12.45 0.00 37.80 4.35
2171 2250 1.243902 GGACTTGGCAAATCCGACAA 58.756 50.000 12.45 0.00 37.80 3.18
2179 2258 2.034053 GGCAAATCCGACAACTCAAACA 59.966 45.455 0.00 0.00 0.00 2.83
2180 2259 3.042887 GCAAATCCGACAACTCAAACAC 58.957 45.455 0.00 0.00 0.00 3.32
2181 2260 3.628017 CAAATCCGACAACTCAAACACC 58.372 45.455 0.00 0.00 0.00 4.16
2182 2261 1.892209 ATCCGACAACTCAAACACCC 58.108 50.000 0.00 0.00 0.00 4.61
2183 2262 0.531090 TCCGACAACTCAAACACCCG 60.531 55.000 0.00 0.00 0.00 5.28
2184 2263 1.278637 CGACAACTCAAACACCCGC 59.721 57.895 0.00 0.00 0.00 6.13
2185 2264 1.278637 GACAACTCAAACACCCGCG 59.721 57.895 0.00 0.00 0.00 6.46
2186 2265 2.113131 GACAACTCAAACACCCGCGG 62.113 60.000 21.04 21.04 0.00 6.46
2222 2302 1.666888 CCTGTCACGCCTCAAAAATGC 60.667 52.381 0.00 0.00 0.00 3.56
2249 2329 8.607441 TTTCACATCCGGATATCTCAAATTAG 57.393 34.615 18.63 2.30 0.00 1.73
2253 2333 9.224267 CACATCCGGATATCTCAAATTAGAAAT 57.776 33.333 18.63 0.00 0.00 2.17
2254 2334 9.442047 ACATCCGGATATCTCAAATTAGAAATC 57.558 33.333 18.63 0.00 0.00 2.17
2314 2394 2.654877 GAGCTTCGTCCGGTTCCA 59.345 61.111 0.00 0.00 0.00 3.53
2329 2409 4.135153 CCACTCCCCGCTCGTCTG 62.135 72.222 0.00 0.00 0.00 3.51
2379 2459 4.760047 CGCCCCTCGGAGTGTTGG 62.760 72.222 4.02 0.00 33.78 3.77
2389 2469 3.222354 GAGTGTTGGTCCGGTCGCT 62.222 63.158 0.00 0.26 0.00 4.93
2391 2471 3.542676 TGTTGGTCCGGTCGCTGT 61.543 61.111 0.00 0.00 0.00 4.40
2404 2484 2.097791 GGTCGCTGTCAAGGTAGAGTAG 59.902 54.545 0.00 0.00 0.00 2.57
2409 2489 2.428890 CTGTCAAGGTAGAGTAGGGCAG 59.571 54.545 0.00 0.00 0.00 4.85
2416 2496 0.032416 TAGAGTAGGGCAGGGGACAC 60.032 60.000 0.00 0.00 0.00 3.67
2429 2509 4.057428 GACACGAGCCGGCTCACT 62.057 66.667 45.57 31.79 42.86 3.41
2430 2510 4.363990 ACACGAGCCGGCTCACTG 62.364 66.667 45.57 39.37 42.86 3.66
2442 2522 1.739562 CTCACTGGACTCAAGGCGC 60.740 63.158 0.00 0.00 0.00 6.53
2443 2523 2.743928 CACTGGACTCAAGGCGCC 60.744 66.667 21.89 21.89 0.00 6.53
2456 2536 4.719369 GCGCCGTCGTCTTCCTGT 62.719 66.667 0.00 0.00 38.14 4.00
2457 2537 2.049433 CGCCGTCGTCTTCCTGTT 60.049 61.111 0.00 0.00 0.00 3.16
2458 2538 2.372690 CGCCGTCGTCTTCCTGTTG 61.373 63.158 0.00 0.00 0.00 3.33
2459 2539 2.027625 GCCGTCGTCTTCCTGTTGG 61.028 63.158 0.00 0.00 0.00 3.77
2460 2540 1.663739 CCGTCGTCTTCCTGTTGGA 59.336 57.895 0.00 0.00 41.36 3.53
2461 2541 0.388649 CCGTCGTCTTCCTGTTGGAG 60.389 60.000 0.00 0.00 44.24 3.86
2462 2542 0.596577 CGTCGTCTTCCTGTTGGAGA 59.403 55.000 0.00 0.00 44.24 3.71
2463 2543 1.202582 CGTCGTCTTCCTGTTGGAGAT 59.797 52.381 0.00 0.00 44.24 2.75
2464 2544 2.422479 CGTCGTCTTCCTGTTGGAGATA 59.578 50.000 0.00 0.00 44.24 1.98
2465 2545 3.487711 CGTCGTCTTCCTGTTGGAGATAG 60.488 52.174 0.00 0.00 44.24 2.08
2466 2546 3.444388 GTCGTCTTCCTGTTGGAGATAGT 59.556 47.826 0.00 0.00 44.24 2.12
2467 2547 4.082136 GTCGTCTTCCTGTTGGAGATAGTT 60.082 45.833 0.00 0.00 44.24 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.752036 TTCATTGGGCAATTTTGTATCCA 57.248 34.783 0.00 0.00 0.00 3.41
1 2 8.907222 ATATTTCATTGGGCAATTTTGTATCC 57.093 30.769 0.00 0.00 0.00 2.59
4 5 8.877779 CGAAATATTTCATTGGGCAATTTTGTA 58.122 29.630 24.23 0.00 37.01 2.41
5 6 7.626028 GCGAAATATTTCATTGGGCAATTTTGT 60.626 33.333 24.23 0.00 37.01 2.83
6 7 6.687958 GCGAAATATTTCATTGGGCAATTTTG 59.312 34.615 24.23 7.15 37.01 2.44
7 8 6.373774 TGCGAAATATTTCATTGGGCAATTTT 59.626 30.769 24.23 0.00 37.01 1.82
8 9 5.879223 TGCGAAATATTTCATTGGGCAATTT 59.121 32.000 24.23 0.00 37.01 1.82
9 10 5.294060 GTGCGAAATATTTCATTGGGCAATT 59.706 36.000 24.23 0.00 37.01 2.32
10 11 4.810491 GTGCGAAATATTTCATTGGGCAAT 59.190 37.500 24.23 0.00 37.01 3.56
11 12 4.180057 GTGCGAAATATTTCATTGGGCAA 58.820 39.130 24.23 9.70 37.01 4.52
12 13 3.194329 TGTGCGAAATATTTCATTGGGCA 59.806 39.130 24.23 20.94 37.01 5.36
13 14 3.779759 TGTGCGAAATATTTCATTGGGC 58.220 40.909 24.23 19.03 37.01 5.36
14 15 5.350633 ACATGTGCGAAATATTTCATTGGG 58.649 37.500 24.23 11.16 37.01 4.12
15 16 6.530887 TGAACATGTGCGAAATATTTCATTGG 59.469 34.615 24.23 11.48 37.01 3.16
16 17 7.509050 TGAACATGTGCGAAATATTTCATTG 57.491 32.000 24.23 15.93 37.01 2.82
17 18 8.706492 ATTGAACATGTGCGAAATATTTCATT 57.294 26.923 24.23 8.99 37.01 2.57
18 19 8.706492 AATTGAACATGTGCGAAATATTTCAT 57.294 26.923 24.23 10.70 37.01 2.57
19 20 7.275341 GGAATTGAACATGTGCGAAATATTTCA 59.725 33.333 24.23 8.97 37.01 2.69
20 21 7.254084 GGGAATTGAACATGTGCGAAATATTTC 60.254 37.037 16.79 16.79 0.00 2.17
21 22 6.534793 GGGAATTGAACATGTGCGAAATATTT 59.465 34.615 0.00 0.00 0.00 1.40
22 23 6.042143 GGGAATTGAACATGTGCGAAATATT 58.958 36.000 0.00 0.00 0.00 1.28
23 24 5.126869 TGGGAATTGAACATGTGCGAAATAT 59.873 36.000 0.00 0.00 0.00 1.28
24 25 4.460731 TGGGAATTGAACATGTGCGAAATA 59.539 37.500 0.00 0.00 0.00 1.40
25 26 3.257873 TGGGAATTGAACATGTGCGAAAT 59.742 39.130 0.00 0.00 0.00 2.17
26 27 2.625314 TGGGAATTGAACATGTGCGAAA 59.375 40.909 0.00 0.00 0.00 3.46
27 28 2.234143 TGGGAATTGAACATGTGCGAA 58.766 42.857 0.00 0.00 0.00 4.70
28 29 1.902938 TGGGAATTGAACATGTGCGA 58.097 45.000 0.00 0.00 0.00 5.10
29 30 2.721274 TTGGGAATTGAACATGTGCG 57.279 45.000 0.00 0.00 0.00 5.34
30 31 2.738314 GCTTTGGGAATTGAACATGTGC 59.262 45.455 0.00 0.00 0.00 4.57
31 32 3.992643 TGCTTTGGGAATTGAACATGTG 58.007 40.909 0.00 0.00 0.00 3.21
32 33 4.686191 TTGCTTTGGGAATTGAACATGT 57.314 36.364 0.00 0.00 0.00 3.21
33 34 6.875195 ACTAATTGCTTTGGGAATTGAACATG 59.125 34.615 5.90 0.00 42.10 3.21
34 35 6.875195 CACTAATTGCTTTGGGAATTGAACAT 59.125 34.615 5.90 0.00 42.10 2.71
35 36 6.183360 ACACTAATTGCTTTGGGAATTGAACA 60.183 34.615 5.90 0.00 42.10 3.18
36 37 6.223120 ACACTAATTGCTTTGGGAATTGAAC 58.777 36.000 5.90 0.00 42.10 3.18
37 38 6.418057 ACACTAATTGCTTTGGGAATTGAA 57.582 33.333 5.90 0.00 42.10 2.69
38 39 6.350110 GCTACACTAATTGCTTTGGGAATTGA 60.350 38.462 5.90 0.00 42.10 2.57
39 40 5.807011 GCTACACTAATTGCTTTGGGAATTG 59.193 40.000 5.90 0.57 42.10 2.32
40 41 5.105351 GGCTACACTAATTGCTTTGGGAATT 60.105 40.000 0.00 0.00 43.86 2.17
41 42 4.402474 GGCTACACTAATTGCTTTGGGAAT 59.598 41.667 0.00 0.00 35.00 3.01
42 43 3.761752 GGCTACACTAATTGCTTTGGGAA 59.238 43.478 0.00 0.00 0.00 3.97
43 44 3.010138 AGGCTACACTAATTGCTTTGGGA 59.990 43.478 0.00 0.00 0.00 4.37
44 45 3.356290 AGGCTACACTAATTGCTTTGGG 58.644 45.455 0.00 0.00 0.00 4.12
45 46 4.265073 AGAGGCTACACTAATTGCTTTGG 58.735 43.478 0.00 0.00 0.00 3.28
46 47 5.181748 AGAGAGGCTACACTAATTGCTTTG 58.818 41.667 0.00 0.00 0.00 2.77
47 48 5.428184 AGAGAGGCTACACTAATTGCTTT 57.572 39.130 0.00 0.00 0.00 3.51
48 49 5.428184 AAGAGAGGCTACACTAATTGCTT 57.572 39.130 0.00 0.00 0.00 3.91
49 50 5.428184 AAAGAGAGGCTACACTAATTGCT 57.572 39.130 0.00 0.00 0.00 3.91
50 51 5.412904 ACAAAAGAGAGGCTACACTAATTGC 59.587 40.000 0.00 0.00 0.00 3.56
51 52 6.128172 CCACAAAAGAGAGGCTACACTAATTG 60.128 42.308 0.00 0.34 0.00 2.32
52 53 5.940470 CCACAAAAGAGAGGCTACACTAATT 59.060 40.000 0.00 0.00 0.00 1.40
53 54 5.491982 CCACAAAAGAGAGGCTACACTAAT 58.508 41.667 0.00 0.00 0.00 1.73
54 55 4.262894 CCCACAAAAGAGAGGCTACACTAA 60.263 45.833 0.00 0.00 0.00 2.24
55 56 3.260884 CCCACAAAAGAGAGGCTACACTA 59.739 47.826 0.00 0.00 0.00 2.74
56 57 2.039084 CCCACAAAAGAGAGGCTACACT 59.961 50.000 0.00 0.00 0.00 3.55
57 58 2.427506 CCCACAAAAGAGAGGCTACAC 58.572 52.381 0.00 0.00 0.00 2.90
58 59 1.351017 CCCCACAAAAGAGAGGCTACA 59.649 52.381 0.00 0.00 0.00 2.74
59 60 1.628846 TCCCCACAAAAGAGAGGCTAC 59.371 52.381 0.00 0.00 0.00 3.58
60 61 1.909302 CTCCCCACAAAAGAGAGGCTA 59.091 52.381 0.00 0.00 0.00 3.93
61 62 0.695347 CTCCCCACAAAAGAGAGGCT 59.305 55.000 0.00 0.00 0.00 4.58
62 63 0.322906 CCTCCCCACAAAAGAGAGGC 60.323 60.000 0.00 0.00 37.88 4.70
63 64 0.322906 GCCTCCCCACAAAAGAGAGG 60.323 60.000 0.00 0.00 45.74 3.69
64 65 0.674895 CGCCTCCCCACAAAAGAGAG 60.675 60.000 0.00 0.00 0.00 3.20
65 66 1.374947 CGCCTCCCCACAAAAGAGA 59.625 57.895 0.00 0.00 0.00 3.10
66 67 0.537371 AACGCCTCCCCACAAAAGAG 60.537 55.000 0.00 0.00 0.00 2.85
67 68 0.106419 AAACGCCTCCCCACAAAAGA 60.106 50.000 0.00 0.00 0.00 2.52
68 69 0.750249 AAAACGCCTCCCCACAAAAG 59.250 50.000 0.00 0.00 0.00 2.27
69 70 0.461961 CAAAACGCCTCCCCACAAAA 59.538 50.000 0.00 0.00 0.00 2.44
70 71 1.395826 CCAAAACGCCTCCCCACAAA 61.396 55.000 0.00 0.00 0.00 2.83
71 72 1.830408 CCAAAACGCCTCCCCACAA 60.830 57.895 0.00 0.00 0.00 3.33
72 73 2.203422 CCAAAACGCCTCCCCACA 60.203 61.111 0.00 0.00 0.00 4.17
73 74 3.680786 GCCAAAACGCCTCCCCAC 61.681 66.667 0.00 0.00 0.00 4.61
74 75 3.860930 GAGCCAAAACGCCTCCCCA 62.861 63.158 0.00 0.00 0.00 4.96
75 76 3.062466 GAGCCAAAACGCCTCCCC 61.062 66.667 0.00 0.00 0.00 4.81
76 77 3.062466 GGAGCCAAAACGCCTCCC 61.062 66.667 0.00 0.00 0.00 4.30
77 78 3.062466 GGGAGCCAAAACGCCTCC 61.062 66.667 0.00 0.00 0.00 4.30
78 79 3.431725 CGGGAGCCAAAACGCCTC 61.432 66.667 0.00 0.00 0.00 4.70
82 83 3.361977 CACCCGGGAGCCAAAACG 61.362 66.667 32.02 0.00 0.00 3.60
83 84 3.680786 GCACCCGGGAGCCAAAAC 61.681 66.667 30.60 3.28 0.00 2.43
84 85 3.521765 ATGCACCCGGGAGCCAAAA 62.522 57.895 35.77 20.52 0.00 2.44
85 86 3.521765 AATGCACCCGGGAGCCAAA 62.522 57.895 35.77 20.89 0.00 3.28
86 87 3.521765 AAATGCACCCGGGAGCCAA 62.522 57.895 35.77 21.62 0.00 4.52
87 88 3.978193 AAATGCACCCGGGAGCCA 61.978 61.111 35.77 24.84 0.00 4.75
88 89 3.451894 CAAATGCACCCGGGAGCC 61.452 66.667 35.77 20.40 0.00 4.70
89 90 4.133796 GCAAATGCACCCGGGAGC 62.134 66.667 33.35 33.35 41.59 4.70
99 100 0.458370 GTTCATCCGGGTGCAAATGC 60.458 55.000 10.80 0.00 42.50 3.56
100 101 0.887247 TGTTCATCCGGGTGCAAATG 59.113 50.000 10.80 0.24 0.00 2.32
101 102 1.176527 CTGTTCATCCGGGTGCAAAT 58.823 50.000 10.80 0.00 0.00 2.32
102 103 0.179004 ACTGTTCATCCGGGTGCAAA 60.179 50.000 10.80 0.00 0.00 3.68
103 104 0.687920 TACTGTTCATCCGGGTGCAA 59.312 50.000 10.80 2.38 0.00 4.08
104 105 0.036765 GTACTGTTCATCCGGGTGCA 60.037 55.000 10.80 1.76 0.00 4.57
105 106 0.743345 GGTACTGTTCATCCGGGTGC 60.743 60.000 10.80 0.00 0.00 5.01
106 107 0.902531 AGGTACTGTTCATCCGGGTG 59.097 55.000 8.97 8.97 37.18 4.61
107 108 2.537633 TAGGTACTGTTCATCCGGGT 57.462 50.000 0.00 0.00 41.52 5.28
108 109 3.899052 TTTAGGTACTGTTCATCCGGG 57.101 47.619 0.00 0.00 41.52 5.73
165 166 9.224267 GCTACACCAACATGATCATCTATAATT 57.776 33.333 4.86 0.00 0.00 1.40
166 167 8.377799 TGCTACACCAACATGATCATCTATAAT 58.622 33.333 4.86 0.00 0.00 1.28
167 168 7.734942 TGCTACACCAACATGATCATCTATAA 58.265 34.615 4.86 0.00 0.00 0.98
168 169 7.301868 TGCTACACCAACATGATCATCTATA 57.698 36.000 4.86 0.00 0.00 1.31
169 170 6.178607 TGCTACACCAACATGATCATCTAT 57.821 37.500 4.86 0.00 0.00 1.98
170 171 5.612725 TGCTACACCAACATGATCATCTA 57.387 39.130 4.86 0.00 0.00 1.98
171 172 4.492494 TGCTACACCAACATGATCATCT 57.508 40.909 4.86 0.00 0.00 2.90
172 173 5.106197 TGTTTGCTACACCAACATGATCATC 60.106 40.000 4.86 0.00 0.00 2.92
173 174 4.766373 TGTTTGCTACACCAACATGATCAT 59.234 37.500 1.18 1.18 0.00 2.45
174 175 4.140536 TGTTTGCTACACCAACATGATCA 58.859 39.130 0.00 0.00 0.00 2.92
175 176 4.764679 TGTTTGCTACACCAACATGATC 57.235 40.909 0.00 0.00 0.00 2.92
176 177 4.618927 GCATGTTTGCTACACCAACATGAT 60.619 41.667 22.37 0.00 45.77 2.45
177 178 3.305267 GCATGTTTGCTACACCAACATGA 60.305 43.478 22.37 0.00 45.77 3.07
178 179 2.988493 GCATGTTTGCTACACCAACATG 59.012 45.455 16.43 16.43 45.77 3.21
179 180 3.302365 GCATGTTTGCTACACCAACAT 57.698 42.857 0.00 0.00 45.77 2.71
180 181 2.791383 GCATGTTTGCTACACCAACA 57.209 45.000 0.00 0.00 45.77 3.33
190 191 9.778610 TGCATGAAATTTGTCAAGCATGTTTGC 62.779 37.037 16.68 12.26 44.73 3.68
191 192 5.849081 GCATGAAATTTGTCAAGCATGTTTG 59.151 36.000 15.50 15.50 40.93 2.93
192 193 5.527951 TGCATGAAATTTGTCAAGCATGTTT 59.472 32.000 13.63 0.00 44.73 2.83
193 194 5.057819 TGCATGAAATTTGTCAAGCATGTT 58.942 33.333 13.63 0.00 44.73 2.71
194 195 4.633175 TGCATGAAATTTGTCAAGCATGT 58.367 34.783 13.63 0.00 44.73 3.21
197 198 4.587584 TCTGCATGAAATTTGTCAAGCA 57.412 36.364 9.10 9.10 46.69 3.91
198 199 4.143473 CGTTCTGCATGAAATTTGTCAAGC 60.143 41.667 0.00 0.00 41.47 4.01
199 200 4.383649 CCGTTCTGCATGAAATTTGTCAAG 59.616 41.667 0.00 0.00 36.30 3.02
200 201 4.037327 TCCGTTCTGCATGAAATTTGTCAA 59.963 37.500 0.00 0.00 36.30 3.18
201 202 3.567585 TCCGTTCTGCATGAAATTTGTCA 59.432 39.130 0.00 0.00 36.30 3.58
202 203 4.159377 TCCGTTCTGCATGAAATTTGTC 57.841 40.909 0.00 0.00 36.30 3.18
203 204 3.612479 GCTCCGTTCTGCATGAAATTTGT 60.612 43.478 0.00 0.00 36.30 2.83
204 205 2.919229 GCTCCGTTCTGCATGAAATTTG 59.081 45.455 0.00 0.00 36.30 2.32
205 206 2.557924 TGCTCCGTTCTGCATGAAATTT 59.442 40.909 0.00 0.00 36.30 1.82
206 207 2.161855 TGCTCCGTTCTGCATGAAATT 58.838 42.857 0.00 0.00 36.30 1.82
207 208 1.741706 CTGCTCCGTTCTGCATGAAAT 59.258 47.619 0.00 0.00 38.59 2.17
208 209 1.159285 CTGCTCCGTTCTGCATGAAA 58.841 50.000 0.00 0.00 38.59 2.69
209 210 1.300971 GCTGCTCCGTTCTGCATGAA 61.301 55.000 0.00 0.00 38.59 2.57
210 211 1.742880 GCTGCTCCGTTCTGCATGA 60.743 57.895 0.00 0.00 38.59 3.07
211 212 2.789917 GCTGCTCCGTTCTGCATG 59.210 61.111 0.00 0.00 38.59 4.06
212 213 2.816958 CGCTGCTCCGTTCTGCAT 60.817 61.111 0.00 0.00 38.59 3.96
215 216 3.114616 CACCGCTGCTCCGTTCTG 61.115 66.667 0.00 0.00 0.00 3.02
216 217 2.660258 AAACACCGCTGCTCCGTTCT 62.660 55.000 0.00 0.00 0.00 3.01
217 218 2.171489 GAAACACCGCTGCTCCGTTC 62.171 60.000 0.00 0.00 0.00 3.95
218 219 2.203153 AAACACCGCTGCTCCGTT 60.203 55.556 0.00 0.00 0.00 4.44
219 220 2.665185 GAAACACCGCTGCTCCGT 60.665 61.111 0.00 0.00 0.00 4.69
220 221 3.777925 CGAAACACCGCTGCTCCG 61.778 66.667 0.00 0.00 0.00 4.63
221 222 2.665185 ACGAAACACCGCTGCTCC 60.665 61.111 0.00 0.00 0.00 4.70
222 223 2.853914 GACGAAACACCGCTGCTC 59.146 61.111 0.00 0.00 0.00 4.26
223 224 3.036084 CGACGAAACACCGCTGCT 61.036 61.111 0.00 0.00 0.00 4.24
224 225 4.072088 CCGACGAAACACCGCTGC 62.072 66.667 0.00 0.00 0.00 5.25
225 226 2.660552 ACCGACGAAACACCGCTG 60.661 61.111 0.00 0.00 0.00 5.18
226 227 2.632136 TTCACCGACGAAACACCGCT 62.632 55.000 0.00 0.00 0.00 5.52
227 228 1.764180 TTTCACCGACGAAACACCGC 61.764 55.000 0.00 0.00 30.00 5.68
228 229 0.651551 TTTTCACCGACGAAACACCG 59.348 50.000 0.00 0.00 34.68 4.94
229 230 2.828874 TTTTTCACCGACGAAACACC 57.171 45.000 0.00 0.00 34.68 4.16
245 246 4.729227 ATGTCACCCAAAGTTCGTTTTT 57.271 36.364 0.00 0.00 0.00 1.94
246 247 4.729227 AATGTCACCCAAAGTTCGTTTT 57.271 36.364 0.00 0.00 0.00 2.43
247 248 4.429108 CAAATGTCACCCAAAGTTCGTTT 58.571 39.130 0.00 0.00 0.00 3.60
248 249 3.181480 CCAAATGTCACCCAAAGTTCGTT 60.181 43.478 0.00 0.00 0.00 3.85
249 250 2.360801 CCAAATGTCACCCAAAGTTCGT 59.639 45.455 0.00 0.00 0.00 3.85
250 251 2.360801 ACCAAATGTCACCCAAAGTTCG 59.639 45.455 0.00 0.00 0.00 3.95
251 252 3.977427 GACCAAATGTCACCCAAAGTTC 58.023 45.455 0.00 0.00 43.85 3.01
262 263 6.089249 AGGACAAATCAAAGACCAAATGTC 57.911 37.500 0.00 0.00 44.82 3.06
263 264 6.484364 AAGGACAAATCAAAGACCAAATGT 57.516 33.333 0.00 0.00 0.00 2.71
264 265 7.790823 AAAAGGACAAATCAAAGACCAAATG 57.209 32.000 0.00 0.00 0.00 2.32
265 266 7.201723 GCAAAAAGGACAAATCAAAGACCAAAT 60.202 33.333 0.00 0.00 0.00 2.32
266 267 6.093357 GCAAAAAGGACAAATCAAAGACCAAA 59.907 34.615 0.00 0.00 0.00 3.28
267 268 5.584251 GCAAAAAGGACAAATCAAAGACCAA 59.416 36.000 0.00 0.00 0.00 3.67
268 269 5.115480 GCAAAAAGGACAAATCAAAGACCA 58.885 37.500 0.00 0.00 0.00 4.02
269 270 4.209080 CGCAAAAAGGACAAATCAAAGACC 59.791 41.667 0.00 0.00 0.00 3.85
270 271 4.318050 GCGCAAAAAGGACAAATCAAAGAC 60.318 41.667 0.30 0.00 0.00 3.01
271 272 3.801594 GCGCAAAAAGGACAAATCAAAGA 59.198 39.130 0.30 0.00 0.00 2.52
272 273 3.555139 TGCGCAAAAAGGACAAATCAAAG 59.445 39.130 8.16 0.00 0.00 2.77
273 274 3.525537 TGCGCAAAAAGGACAAATCAAA 58.474 36.364 8.16 0.00 0.00 2.69
274 275 3.122297 CTGCGCAAAAAGGACAAATCAA 58.878 40.909 13.05 0.00 0.00 2.57
275 276 2.545532 CCTGCGCAAAAAGGACAAATCA 60.546 45.455 13.05 0.00 35.40 2.57
276 277 2.061028 CCTGCGCAAAAAGGACAAATC 58.939 47.619 13.05 0.00 35.40 2.17
277 278 1.873486 GCCTGCGCAAAAAGGACAAAT 60.873 47.619 16.91 0.00 35.40 2.32
278 279 0.529555 GCCTGCGCAAAAAGGACAAA 60.530 50.000 16.91 0.00 35.40 2.83
279 280 1.067250 GCCTGCGCAAAAAGGACAA 59.933 52.632 16.91 0.00 35.40 3.18
280 281 2.727544 GCCTGCGCAAAAAGGACA 59.272 55.556 16.91 0.00 35.40 4.02
281 282 2.049156 GGCCTGCGCAAAAAGGAC 60.049 61.111 16.91 10.61 35.40 3.85
282 283 1.680522 TTTGGCCTGCGCAAAAAGGA 61.681 50.000 16.91 0.00 34.87 3.36
283 284 0.813210 TTTTGGCCTGCGCAAAAAGG 60.813 50.000 13.05 10.71 41.92 3.11
284 285 2.687842 TTTTGGCCTGCGCAAAAAG 58.312 47.368 13.05 0.00 41.92 2.27
285 286 4.941609 TTTTGGCCTGCGCAAAAA 57.058 44.444 13.05 12.67 44.06 1.94
286 287 1.505477 GCATTTTGGCCTGCGCAAAA 61.505 50.000 13.05 9.31 36.06 2.44
287 288 1.960250 GCATTTTGGCCTGCGCAAA 60.960 52.632 13.05 1.02 36.38 3.68
288 289 2.357275 GCATTTTGGCCTGCGCAA 60.357 55.556 13.05 0.00 36.38 4.85
289 290 1.530876 TAAGCATTTTGGCCTGCGCA 61.531 50.000 10.98 10.98 43.17 6.09
290 291 0.389687 TTAAGCATTTTGGCCTGCGC 60.390 50.000 3.32 0.00 43.17 6.09
291 292 1.067635 AGTTAAGCATTTTGGCCTGCG 60.068 47.619 3.32 0.00 43.17 5.18
292 293 2.749280 AGTTAAGCATTTTGGCCTGC 57.251 45.000 3.32 5.23 38.69 4.85
312 313 8.470805 TGCTACCTGTAAATTTTGAGACAAAAA 58.529 29.630 12.43 0.00 33.76 1.94
313 314 8.001881 TGCTACCTGTAAATTTTGAGACAAAA 57.998 30.769 11.14 11.14 0.00 2.44
314 315 7.575414 TGCTACCTGTAAATTTTGAGACAAA 57.425 32.000 0.00 0.00 0.00 2.83
315 316 7.759489 ATGCTACCTGTAAATTTTGAGACAA 57.241 32.000 0.00 0.00 0.00 3.18
316 317 7.759489 AATGCTACCTGTAAATTTTGAGACA 57.241 32.000 0.00 0.00 0.00 3.41
317 318 8.082242 ACAAATGCTACCTGTAAATTTTGAGAC 58.918 33.333 0.00 0.00 0.00 3.36
318 319 8.177119 ACAAATGCTACCTGTAAATTTTGAGA 57.823 30.769 0.00 0.00 0.00 3.27
320 321 9.853555 CATACAAATGCTACCTGTAAATTTTGA 57.146 29.630 0.00 0.00 0.00 2.69
321 322 9.638239 ACATACAAATGCTACCTGTAAATTTTG 57.362 29.630 0.00 0.00 36.50 2.44
322 323 9.638239 CACATACAAATGCTACCTGTAAATTTT 57.362 29.630 0.00 0.00 36.50 1.82
323 324 9.019656 TCACATACAAATGCTACCTGTAAATTT 57.980 29.630 0.00 0.00 36.50 1.82
324 325 8.458843 GTCACATACAAATGCTACCTGTAAATT 58.541 33.333 0.00 0.00 36.50 1.82
325 326 7.609918 TGTCACATACAAATGCTACCTGTAAAT 59.390 33.333 0.00 0.00 36.50 1.40
326 327 6.937465 TGTCACATACAAATGCTACCTGTAAA 59.063 34.615 0.00 0.00 36.50 2.01
327 328 6.468543 TGTCACATACAAATGCTACCTGTAA 58.531 36.000 0.00 0.00 36.50 2.41
328 329 6.043854 TGTCACATACAAATGCTACCTGTA 57.956 37.500 0.00 0.00 36.50 2.74
329 330 4.905429 TGTCACATACAAATGCTACCTGT 58.095 39.130 0.00 0.00 36.50 4.00
330 331 5.878332 TTGTCACATACAAATGCTACCTG 57.122 39.130 0.00 0.00 45.11 4.00
340 341 7.433708 AATTCGTGATCTTTGTCACATACAA 57.566 32.000 7.67 0.00 46.89 2.41
341 342 7.433708 AAATTCGTGATCTTTGTCACATACA 57.566 32.000 7.67 0.00 46.89 2.29
342 343 8.728088 AAAAATTCGTGATCTTTGTCACATAC 57.272 30.769 7.67 0.00 46.89 2.39
391 392 8.950210 ACACAATTACTCATTCGATTTGATCTT 58.050 29.630 0.00 0.00 0.00 2.40
392 393 8.498054 ACACAATTACTCATTCGATTTGATCT 57.502 30.769 0.00 0.00 0.00 2.75
399 400 9.140286 CGGATAATACACAATTACTCATTCGAT 57.860 33.333 0.00 0.00 32.86 3.59
400 401 8.139350 ACGGATAATACACAATTACTCATTCGA 58.861 33.333 0.00 0.00 32.86 3.71
401 402 8.294341 ACGGATAATACACAATTACTCATTCG 57.706 34.615 0.00 0.00 32.86 3.34
403 404 9.607988 TGAACGGATAATACACAATTACTCATT 57.392 29.630 0.00 0.00 32.86 2.57
404 405 9.607988 TTGAACGGATAATACACAATTACTCAT 57.392 29.630 0.00 0.00 32.86 2.90
405 406 9.438228 TTTGAACGGATAATACACAATTACTCA 57.562 29.630 0.00 0.00 32.86 3.41
412 413 9.453325 GTTTTCTTTTGAACGGATAATACACAA 57.547 29.630 0.00 0.00 38.30 3.33
413 414 8.842280 AGTTTTCTTTTGAACGGATAATACACA 58.158 29.630 0.00 0.00 38.30 3.72
414 415 9.326339 GAGTTTTCTTTTGAACGGATAATACAC 57.674 33.333 0.00 0.00 38.30 2.90
415 416 9.280174 AGAGTTTTCTTTTGAACGGATAATACA 57.720 29.630 0.00 0.00 38.30 2.29
439 440 8.846943 TGATTAGTTATGCTCTGTGAAAAAGA 57.153 30.769 0.00 0.00 0.00 2.52
440 441 9.552114 CTTGATTAGTTATGCTCTGTGAAAAAG 57.448 33.333 0.00 0.00 0.00 2.27
441 442 8.023128 GCTTGATTAGTTATGCTCTGTGAAAAA 58.977 33.333 0.00 0.00 0.00 1.94
442 443 7.174772 TGCTTGATTAGTTATGCTCTGTGAAAA 59.825 33.333 0.00 0.00 0.00 2.29
443 444 6.654582 TGCTTGATTAGTTATGCTCTGTGAAA 59.345 34.615 0.00 0.00 0.00 2.69
444 445 6.092670 GTGCTTGATTAGTTATGCTCTGTGAA 59.907 38.462 0.00 0.00 0.00 3.18
445 446 5.582269 GTGCTTGATTAGTTATGCTCTGTGA 59.418 40.000 0.00 0.00 0.00 3.58
446 447 5.583854 AGTGCTTGATTAGTTATGCTCTGTG 59.416 40.000 0.00 0.00 0.00 3.66
447 448 5.738909 AGTGCTTGATTAGTTATGCTCTGT 58.261 37.500 0.00 0.00 0.00 3.41
448 449 5.051173 CGAGTGCTTGATTAGTTATGCTCTG 60.051 44.000 0.00 0.00 0.00 3.35
449 450 5.046529 CGAGTGCTTGATTAGTTATGCTCT 58.953 41.667 0.00 0.00 0.00 4.09
450 451 4.210120 CCGAGTGCTTGATTAGTTATGCTC 59.790 45.833 0.00 0.00 0.00 4.26
451 452 4.122776 CCGAGTGCTTGATTAGTTATGCT 58.877 43.478 0.00 0.00 0.00 3.79
452 453 3.303395 GCCGAGTGCTTGATTAGTTATGC 60.303 47.826 0.00 0.00 36.87 3.14
453 454 3.871006 TGCCGAGTGCTTGATTAGTTATG 59.129 43.478 0.00 0.00 42.00 1.90
454 455 4.137116 TGCCGAGTGCTTGATTAGTTAT 57.863 40.909 0.00 0.00 42.00 1.89
455 456 3.603158 TGCCGAGTGCTTGATTAGTTA 57.397 42.857 0.00 0.00 42.00 2.24
456 457 2.472695 TGCCGAGTGCTTGATTAGTT 57.527 45.000 0.00 0.00 42.00 2.24
457 458 2.093500 TGATGCCGAGTGCTTGATTAGT 60.093 45.455 0.00 0.00 42.00 2.24
458 459 2.554142 TGATGCCGAGTGCTTGATTAG 58.446 47.619 0.00 0.00 42.00 1.73
459 460 2.677836 GTTGATGCCGAGTGCTTGATTA 59.322 45.455 0.00 0.00 42.00 1.75
463 464 0.167470 CTGTTGATGCCGAGTGCTTG 59.833 55.000 0.00 0.00 42.00 4.01
512 513 2.160721 ACGAGGTCTGGGTATGTCAT 57.839 50.000 0.00 0.00 0.00 3.06
526 527 6.481954 AACTGCTAGTTTAATTCAACGAGG 57.518 37.500 12.64 2.52 34.11 4.63
533 534 9.262472 CATCGTGTTTAACTGCTAGTTTAATTC 57.738 33.333 6.82 2.90 39.51 2.17
573 574 4.180946 CGTCTCCGTCGGCTCCAG 62.181 72.222 6.34 0.00 0.00 3.86
590 591 1.134220 TGGGTGTTGTTCCAGTCAGAC 60.134 52.381 0.00 0.00 0.00 3.51
626 627 1.221414 CTGCATAGCCTTTACGAGCC 58.779 55.000 0.00 0.00 0.00 4.70
633 634 4.225497 GCGGACTGCATAGCCTTT 57.775 55.556 0.00 0.00 45.45 3.11
744 751 1.001597 CGGCCGACTGGTCTATTCTAC 60.002 57.143 24.07 0.00 37.90 2.59
745 752 1.315690 CGGCCGACTGGTCTATTCTA 58.684 55.000 24.07 0.00 37.90 2.10
781 788 2.588877 CGGGATGATGGACGTGGC 60.589 66.667 0.00 0.00 0.00 5.01
820 828 3.655211 AGGCAGCAGGAAGGTGGG 61.655 66.667 0.00 0.00 45.73 4.61
831 839 0.460987 CTATATAGGCGGCAGGCAGC 60.461 60.000 13.08 7.89 46.16 5.25
842 865 4.505039 GGTGGGTGGTTTGCTCTATATAGG 60.505 50.000 9.89 2.37 0.00 2.57
932 980 2.267174 AATCTTGGCCTGGATCGATG 57.733 50.000 0.54 0.00 0.00 3.84
987 1037 3.007614 AGTTACCCATGTATATGCGGACC 59.992 47.826 11.98 0.00 32.79 4.46
994 1044 5.510861 GCGAGACCAAGTTACCCATGTATAT 60.511 44.000 0.00 0.00 0.00 0.86
1473 1527 0.255604 ACGGGTGCCATGAATCATGA 59.744 50.000 23.55 0.00 43.81 3.07
1474 1528 0.664761 GACGGGTGCCATGAATCATG 59.335 55.000 15.88 15.88 41.10 3.07
1475 1529 0.548031 AGACGGGTGCCATGAATCAT 59.452 50.000 0.00 0.00 0.00 2.45
1476 1530 0.392863 CAGACGGGTGCCATGAATCA 60.393 55.000 0.00 0.00 0.00 2.57
1477 1531 0.392998 ACAGACGGGTGCCATGAATC 60.393 55.000 0.00 0.00 0.00 2.52
1478 1532 0.908910 TACAGACGGGTGCCATGAAT 59.091 50.000 0.00 0.00 0.00 2.57
1479 1533 0.249120 CTACAGACGGGTGCCATGAA 59.751 55.000 0.00 0.00 0.00 2.57
1549 1603 8.246180 TGCTTGAAAAAGAAGGATGATCAATAC 58.754 33.333 0.00 0.00 0.00 1.89
1593 1647 5.151632 ACAAGACAAATGTACACGTCAAC 57.848 39.130 18.82 3.20 0.00 3.18
1640 1695 6.635755 ACTATTTCTAGCTCTGACAACCTTC 58.364 40.000 0.00 0.00 0.00 3.46
1666 1721 8.398665 GGAGTAGCATTTAGGTTTGACAATTAG 58.601 37.037 0.00 0.00 0.00 1.73
1667 1722 7.338449 GGGAGTAGCATTTAGGTTTGACAATTA 59.662 37.037 0.00 0.00 0.00 1.40
1668 1723 6.152831 GGGAGTAGCATTTAGGTTTGACAATT 59.847 38.462 0.00 0.00 0.00 2.32
1744 1812 7.362234 AGGCCTAAATGTTTTTCCCTATACAT 58.638 34.615 1.29 0.00 32.89 2.29
1752 1820 5.237815 CAAAGGAGGCCTAAATGTTTTTCC 58.762 41.667 4.42 0.00 31.13 3.13
1765 1833 0.256177 CCTAAGGACCAAAGGAGGCC 59.744 60.000 6.32 0.00 31.64 5.19
1769 1837 3.858696 TCTACCCTAAGGACCAAAGGA 57.141 47.619 12.61 0.00 36.73 3.36
1770 1838 4.921644 TTTCTACCCTAAGGACCAAAGG 57.078 45.455 5.35 5.35 36.73 3.11
1771 1839 7.776618 AATTTTTCTACCCTAAGGACCAAAG 57.223 36.000 0.00 0.00 36.73 2.77
1772 1840 9.831682 AATAATTTTTCTACCCTAAGGACCAAA 57.168 29.630 0.00 0.00 36.73 3.28
1773 1841 9.250246 CAATAATTTTTCTACCCTAAGGACCAA 57.750 33.333 0.00 0.00 36.73 3.67
1774 1842 7.837187 CCAATAATTTTTCTACCCTAAGGACCA 59.163 37.037 0.00 0.00 36.73 4.02
1775 1843 8.057011 TCCAATAATTTTTCTACCCTAAGGACC 58.943 37.037 0.00 0.00 36.73 4.46
1776 1844 9.470399 TTCCAATAATTTTTCTACCCTAAGGAC 57.530 33.333 0.00 0.00 36.73 3.85
1896 1971 9.807921 TTAGGTTAGACTCAATGGAAAAATTCT 57.192 29.630 0.00 0.00 0.00 2.40
1899 1974 9.533831 ACATTAGGTTAGACTCAATGGAAAAAT 57.466 29.630 0.00 0.00 32.20 1.82
1938 2016 6.498651 GGGATTCTCTCTATCCTCCACATTTA 59.501 42.308 0.00 0.00 41.13 1.40
2045 2123 2.158325 AGGCCTCCTTTGGTTTGAATGA 60.158 45.455 0.00 0.00 0.00 2.57
2047 2125 2.702270 AGGCCTCCTTTGGTTTGAAT 57.298 45.000 0.00 0.00 0.00 2.57
2048 2126 2.470057 AAGGCCTCCTTTGGTTTGAA 57.530 45.000 5.23 0.00 41.69 2.69
2049 2127 2.175931 TGTAAGGCCTCCTTTGGTTTGA 59.824 45.455 5.23 0.00 41.69 2.69
2076 2155 9.283768 TCTTACGATGAATATATGTTTGGCATT 57.716 29.630 0.00 0.00 38.94 3.56
2096 2175 0.669077 CGGAGGGAGGACATCTTACG 59.331 60.000 0.00 0.00 0.00 3.18
2097 2176 1.777941 ACGGAGGGAGGACATCTTAC 58.222 55.000 0.00 0.00 0.00 2.34
2101 2180 1.196012 AGAAACGGAGGGAGGACATC 58.804 55.000 0.00 0.00 0.00 3.06
2136 2215 1.140452 AGTCCGTCCGTAGATGCTCTA 59.860 52.381 0.00 0.00 0.00 2.43
2148 2227 2.180674 GGATTTGCCAAGTCCGTCC 58.819 57.895 2.98 0.00 36.34 4.79
2153 2232 1.880027 AGTTGTCGGATTTGCCAAGTC 59.120 47.619 0.00 0.00 35.94 3.01
2159 2238 3.042887 GTGTTTGAGTTGTCGGATTTGC 58.957 45.455 0.00 0.00 0.00 3.68
2160 2239 3.550030 GGGTGTTTGAGTTGTCGGATTTG 60.550 47.826 0.00 0.00 0.00 2.32
2170 2249 1.890510 GTCCGCGGGTGTTTGAGTT 60.891 57.895 27.83 0.00 0.00 3.01
2171 2250 2.280592 GTCCGCGGGTGTTTGAGT 60.281 61.111 27.83 0.00 0.00 3.41
2204 2283 1.028130 TGCATTTTTGAGGCGTGACA 58.972 45.000 0.00 0.00 38.04 3.58
2211 2290 4.327898 CGGATGTGAAATGCATTTTTGAGG 59.672 41.667 24.81 8.69 0.00 3.86
2222 2302 6.866010 TTTGAGATATCCGGATGTGAAATG 57.134 37.500 27.55 0.00 0.00 2.32
2280 2360 1.482278 CTCCGCTCAAAGATCGCTAC 58.518 55.000 0.00 0.00 0.00 3.58
2281 2361 0.249073 GCTCCGCTCAAAGATCGCTA 60.249 55.000 0.00 0.00 0.00 4.26
2282 2362 1.520342 GCTCCGCTCAAAGATCGCT 60.520 57.895 0.00 0.00 0.00 4.93
2310 2390 3.379445 GACGAGCGGGGAGTGGAA 61.379 66.667 0.00 0.00 0.00 3.53
2379 2459 1.870055 TACCTTGACAGCGACCGGAC 61.870 60.000 9.46 0.00 0.00 4.79
2383 2463 0.889306 ACTCTACCTTGACAGCGACC 59.111 55.000 0.00 0.00 0.00 4.79
2389 2469 2.457598 CTGCCCTACTCTACCTTGACA 58.542 52.381 0.00 0.00 0.00 3.58
2391 2471 1.343075 CCCTGCCCTACTCTACCTTGA 60.343 57.143 0.00 0.00 0.00 3.02
2416 2496 4.803426 GTCCAGTGAGCCGGCTCG 62.803 72.222 42.48 31.11 45.48 5.03
2420 2500 1.079543 CTTGAGTCCAGTGAGCCGG 60.080 63.158 0.00 0.00 0.00 6.13
2429 2509 4.373116 GACGGCGCCTTGAGTCCA 62.373 66.667 26.68 0.00 0.00 4.02
2442 2522 0.388649 CTCCAACAGGAAGACGACGG 60.389 60.000 0.00 0.00 0.00 4.79
2443 2523 0.596577 TCTCCAACAGGAAGACGACG 59.403 55.000 0.00 0.00 0.00 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.