>input_sequence_79307
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-------------ATGGGTAACTTGGTCTCGCAGTGCGTCACGGGCGGCGCAGAGCGCGCGGGGCCGCTGGTCGTCCTGC
CGGACGGCAGCCAGTTCCGGCTGGAGGAGCACGCCGGCGTGGCCGAGCTGATGATCGAGGCGCCGGGGCACGTTGTTGCC
ATAGCGAGGGACGCCGCCAAGGAGCGGCGGCTGCGTGCCCTGGCGGCCGACGAGTTCCTGCGCGCCGGGGAGGTGTACCT
CCTCGTGCCCGCCGGGAGGGCCGGGGCGCGGCTGGGCGGTCAGGAGGCGGACGCCATCCGCCGGCTGGTGTCCGGCAAGA
AGGATGGCAAGGGCAGGGGCAGCAGGTCCGGGAGAAGGATTTTCCCGGAAGGAGAAGCCGCGAGCACCGAGGGTGGAAAG
GAGTCTGCTGAATGTGCGCTGCTTTGTAGGATTAGGCCAAGGCAGTGGAGGCCCGCCCTTGACACCATCTTCGAGGCTTA
G-------------------------------------------------------------------------------
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>chr5D_1_TraesCS5D01G213700
TGGATACAAAATTGCCCAATGAAATATTTCGCACATGTTCAATTCCCAAAGCAATTAGTGTAGCCTCTCTTTTGTGGGGA
GGCGTTTTGGCTCCCGGGTGCATTTGCACCCGGATGAACAGTACCTAAAAAAACAATTTAAATGTTTTCAAAAAATTCTG
AAAAAAATTATAGATGATCATGTTGGTGTAGCAAACATGCTTGACAAATTTCATGCAGAACGGAGCAGCGGTGTTTCGTC
GGTGAAAAAACGAACTTTGGGTGACATTTGGTCTTTGATTTGTCCTTTTTGCGCAGGCCAAAATGCTTAACTTTTTTGTC
TCAAAATTTACAGGTAGCATTTGTATGTGACAAAGATCACGAATTTTTTTTGTCTCAATTTTAATTAAGATAAGATCAAA
TCGAATGAGTAATTGTGTATTATCCGTTCAAAAGAAAACTCTTTTTCACAGAGCATAACTAATCAAGCACTCGGCATCAA
CAGCACGAAGCGATCAAACTGACCCGATCGTCATGACATACCCAGACCTCGTTGAATTAAACTAGCAGTTAAACACGATG
TGTTTGTTAGGGTCTGGAGCCGACGGAGACGTCTGACTGGAACAACACCCACTCCAAAGACCAGGCGGCTCGTAAAGGCT
ATGCAGTCCGCACCCGCGGTGTTGACGTGTTCGGCGCTGGGCCGCGCGAAGTGGATCGTATCAAACACTCACACT-----
-GCCGCTACGTCCAATCGCACGCGCTCCGTGTAGAATAGACCAGTCGGCCGGCCGGACCCCATCTCCGCCACGTCCATCA
TCCCGGTGCAGCTCCGAGCG-GACAAGCCCACCTTCCTGCTGCCTG---------------CCGCCTATATAGAGCAAAC
CACCCACCGGGGACACACCCATCTCCAGATTCCTTTCACTTGGA------TAAACACCAGA-------------------
GCTCTTCGTCGACCAACAACATCGA--TCCAGGCCAAGATTTGGTACTACTTTACGTCGCAGCACGAGCACACCACGGTC
CGCA----TATACATGGGTAACTTGGTCTCGCAGTGCGTCACGGGCGGCGCAGAGCGCGCGGGGCCGCTGGTCGTCCTGC
CGGACGGCAGCCAGTTCCGGCTGGAGGAGCACGCCGGCGTGGCCGAGCTGATGATCGAGGCGCCGGGGCACGTTGTTGCC
ATAGCGAGGGACGCCGCCAAGGAGCGGCGGCTGCGTGCCCTGGCGGCCGACGAGTTCCTGCGCGCCGGGGAGGTGTACCT
CCTCGTGCCCGCCGGGAGGGCCGGGGCGCGGCTGGGCGGTCAGGAGGCGGACGCCATCCGCCGGCTGGTGTCCGGCAAGA
AGGATGGCAAGGGCAGGGGCAGCAGGTCCGGGAGAAGGATTTTCCCGGAAGGAGAAGCCGCGAGCACCGAGGGTGGAAAG
GAGTCTGCTGAATGTGCGCTGCTTTGTAGGATTAGGCCAAGGCAGTGGAGGCCCGCCCTTGACACCATCTTCGAGGCTTA
GATCGATCATGATTCATGGCACCCGTCTGTAGGGTAGAATAGGAAATCCAATTCATTCATTCGTTTTGTTATTTTTTGTT
GAGTATTGATCATCCTTCTTTTTCAAGCAAGGAGAGAAGGTATTCGG-TTGACGTGTACATTTGTCTTGTAAACCTTCAA
CTTATTTTGGAGTAGAAGGTTGTCAGAGCTAGAAATAGTACTAATTGTCAAACCTAAATGCTACTCCCTCCGT-------
------TCATACAGATTTTTTGAGAAGTCAAATTTCACAAACTTTGATCAAATGTATAGGGAAAAACATTTAGGCCTCCT
TTGGTCCTTAGGGTAGAAAAATTATTGGAAAATCATAAGAAATA-------AGATGACATGCATCTCAAATGTCATCTCA
AATCCTATGAGTGAAAATAGAAAAAGAGATGTTATTTTGTTCACATCATAAGAA---TTTTTCCATTGAGTCTAACCTAA
TGTTTATTTTCCTATTAAATGTGGAGGATAGAGAGAATCCCTTCATATAAATAGGATTCTATTCCTACAAACTAAAGGGC
TCTAAAGAAAACTTTCCTATATAAATTCTATCCTACAAAATTTCATTCAAACCAAAGGAGGCCTTACATT-TAGAATGCC
AAACATATATTCATCGTAAGATGTCCTCCCTCCGTTTCTAAATATAAGTCTTTTTAGAGCATCTACGGACGGACTTGGCA
AATCCGACAACTCAAACACCCGCGGACGCGCGGACAGTGACCTGTCACGCCTC-AAAAATGCATTTCACATCCGGATATC
TCAAATTAGAAATCTAAAATCCATATTATTACATGCAACGTAGCGATCTTTGAGCGGAGCTTCGTCCGGTTCCACTCCCC
GCTCGTCTGGCTCCGCCGTGGCCATGTCCGGCGGCCGGCTGCGCCCCTCGGAGTGTTGGTCCGGTCGCTGTCAAGGTAGA
GTAGGGCAGGGGACACGAGCCGGCTCACTGGACTCAAGGCGCCGTCGTCTTCCTGTTGGAGATAGTT
>chr5A_461
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------------------------------------------------------------AATTAAGCACTCGGCATCAA
CAGCACGAAGCAATCAAACTGACCCGATCGTCGTGACATACCCAGAGCTCGTTAAATTAAACTAGCGGTTAAACACGATG
TGTTTGTTTGGGTTTGGAGCCGACGGAGACTTCTGACTGGAACAACACCTACTCCGA---------------------AG
GC----TCTGCACCCGCGGTGTTGACGTGTTCGGCGCTGGGCCGCGCGAAGTGGATCGTATCAAACACTCCCACTCTCGC
TGCCGCTACGTCCAATCGCACGCGCTCCGT--AGAATAGGCCAGTCGGCCGGCTGGACCCCATCTC--------------
----GGTGCAGCTCCGAGCG-GACAAGTCCACCTTCGTCCTGCCTGCCGCCTTCCTCTCCTCCGGCTATATAGAGCAAAT
CACCCACCGAGGACAAAT-CATCTCCAGATTCCTTTCACTTGGA------TAAACACCAGA-------------------
GCTCTTCGTCGACCAACAAGATCGA--TCCAGGCCAAGATTTGGTACTGCTCTACGTCGCAGCACGAGCACATCACAGTC
CGCGTGCGTATACATGGGTAACTTGGTCTCGCAGTGCGTCACGGGCGGCGCAGAGCGAGCGAGTCCGCTGGTCGTCCTGC
CGGACGGCAGCCAGTTCCGGCTGGAGGAGCACGCCGGCGTGGCCGAGCTGATGATCGAGGCGCCGGGGCACGTTGCTGTC
ATAGCGAGGGACGCCGCCAAGGAGCGGCGGCTGCGGGCCCTGGCGGCCGACGAGTTCCTGCGCGCCGGCGAGGTGTACCT
CCTCGTGCCCGCCGGGAGGGCCGGGGCGCGGCTGGGCGGTCAGGAGGCGGACGCCATCCGCCGGCTGGTGTCCGGCAAGA
AGGGGGGCAAGGGCAGGGGCAACAGGTCTGGGAGAAGGATTTTCCCGGAAGGAGAAGCAGCTAGCACCGAGGGTGGAAAG
GAGTCTGCTGAATGTGCGCTGCTTTGTAGGATTAGGCCAAGGCAGTGGAGGCCCGCCCTTGACACCATCTTCGAGGCTTA
GATTGA-------TCATGGCCCCCGTCTCTAGGTTAGAATAGGAA--------CATTCATTCGTTTTGTTATTTTTTGTT
GAATATTGATCATCCTTCTTTTTCAAGCAAGGAGAGAAGGAATTCGTTTTGACGTGTAC---TGTCTTGTAAAGCTTTAA
CTTATTTTGGAGTACAAGGTTGTCAGAGCTAGAAATAGTA---ATTGTCAAACCTAAATGCTACTCATTCTGT-------
------GCATACAGATTTGTTGAGAAGTCAAACTTCACAAATTTTGATCAAGTGTATAGAGAAAAATATTTACGCCC---
-------------TAGAAAAATCATAGCAATAGAAAAGTCATAAAAAAATGAGATGACATGCATCTCAAATGTCATCTCA
AATCCTATGAGTGAAAATAGAAAAGAAGATGTTGTTTGGTTCATATCATAGGATTTTTTTTTCTATTGAATCTAGCCTAA
TGTTTATTTTCCTATGAAATGTGGAGGATAGAAAAAATTCCTTCATAGAAATAGGATTCTATTCCTACAAACTAAAGGAC
TCTAAAGGAATTTTTTCTATAAAAATATTATCCTACAAAATTCCTC-CAAACCAAAGGAGGCCTTAACATCTAGTATACC
AAACATATATTCATTATAAAATGTCCTCCCTTTGTTTCTAAATATAAGTCTTTTAAGAGCATCTACAACCGAACTTGAGA
AATCCGACCCCTCAAAC--------ACGCGCGGATAGTGACCAGTCACGTCTCAAAAAATGGATTTCACATCCGGATATC
TCAAATTAAAAACATGAAATCCATATTATTACATGCAACACGGCGATCTTTGAGCGGAGCTTCGTCCGGGTCCGCTCCCC
GCTCGTCTAGCTCCGCCGTGGCCATGTCCAGCGGCCGGTTGCGCCCCTCGGAGTGTTGATCCAGTCGCCGGCAAGGTAGA
GTAAGGCATGGGACATGAGTCGGCTCACGCGACTCAAGGCGTTGTCGTCTCCC--------------
>chr5B_487
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------GAAGCGATCAAACTGACCCGATCGTGGTGACAGATCCAGAGCACGTTAAATTAAACTAGCAGTTCAACACGATG
TGTTTGTTTGGGTTTGGAGCCGACGGAGACTTCTGACTGGAACAACACCCACTCCAAAGACCAGGCAGCTCGTTCGTGAG
GC----TCTGCGCCCGTTGTGTTGACGTGTTCGGCGCTGGGCCGCGCGAAGTGGATCGTATCAAACACTCACACTCTCGC
TGCTGCTACGTCCAATCGCACGCGCTCCGT--AGAATGGGCCAGTCGGCCGGCTGGACCCCATCTCCACCACGTCCATCT
---CGGTGCAGCTCTGAGCGGGACAAGACCACCTTCCTCCTGCCTGCCGCCTTCCTCTCCTCCGGCTATATAGAGCAAGC
CACCCACCGGGGACACACCCATCTCCAGATTCCTTTCACCTGGAGTCGGATAAACACCAATCAAAACTCCGGTGCTACTT
GCTCCTCGTCGACCA-CAAGATCGATCTCCAGACCAAGATTTGCTAGCACGTTGTAGCACAA------CACACCAGAGTC
CGG----GTATACATGGGTAACTTGGTCTCGCAGTGCGTCACGGGCGACGCAGAGCGCGCGGGGCCGCTGGTCGTCCTGC
CGGACGGCAGCCAGTTCCGGCTGGAGGAGCACGCCGGCGTCGCGGAGCTGATGATCGAGGCGCCGGGGCACGTGGTTGCC
CAGGCGAGGGACGCCGCCAAGGAGCGGCGGCTGCGAGCCCTGGCGGCCGACGAGTTCCTGCGCGCCGGCGAGGTGTACCT
CCTCGTGCCCGCTGGGAGGGCCGGGGCGCGCCTGGGCGGTCAGGAGGCGGACGCCATCCGCCGGCTGGTGTCCGGCAAGA
ATGGTGGCAAGGGCAAGGGCAGCAGGTCCGGGAGAAGGATTTTCCCGGAAGGAGAAGCAGCGAGCACCGAGGATGGAAAT
GAGTCTGCTGAATGTGCGCTGCTTTGTAGGATTAGGCCAAGGCAGTGGAGGCCCGCCCTCGACACCATCTTCGAGGCTTA
GATCGA-------TCATGGCCCCCGGCTGTAGGGTAGAATAGGAAATCTGATTCATTCATTATTTTTGTTATTTTTTGTC
GAATATGGATCATCCTTCTTTTTCAAGCAAGGAGAGAAGGTATTCGT-TTGACGTGTACATGTGTCTTGTAAAGCTTCAA
CTTATTTTGGAGCAAAAGGTTTTCAGAGCTAGAAATAGTA---ATTGTCAAACCTAAATGTTACTCCCTCCGTTTCATGA
TGCAGGGCATACAGATTTTTTGAGAAGTCCAACTTCACAAATTTTGATCAAGTTTGTAGAGAAAAACATTTA--------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S----------------
--------------------------------S-------------S------S--------------------------
--------S----S----------------S-----------------------------------S------SSSS-SS
SSSSSS--S-----------------------------------------------------------------------
------------------------------SS-------S-------------S-------------S-----------S
SSS------------------------S----------S-------------------------S---------------
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-------------------S--------------------------------------------------------S---
---S----------------------------------------------------------------------------
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-----------------------------------S--------------------------------S-----------
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---S------------------------------------------------------S---------------------
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------SSSSSSS-------S---------------------------SS------------------------------
--S-------------------------------------------S--------------S-----------S------
--------------S-------------------------SSS-------------------------------------
------S-------------------------S--------S---------S-------S------------S---SSSS
SSSSSSSSSSSSS---------S--S-S--S-SS-S-SSS-SS-------------------------------------
------------------------SS-------S---S-----S------S--S---------S-----S----S-----
---------------S----------------S-S---S--------S------------------------------S-
-------S--SS---S-----S----SS--------------S-SSS-------------------SSS-----S--S--
--------------SS---S-----------SS---------------------S-----------SSS--S-----SS-
--------SS-------SSSSSSSS---------S-------S------S-----------S------------------
--------S---SS-S-----------------------SSS---------------------------S---S------
--------S--------------------S--------S-------------------S---S-----S-S---------
---S----S------S---S--------SS-----------SS-------S--SSSSSSSSSSSSSS
>forward_124
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------------------------TGCACCCGGATGAACAGTAC------------------------------------
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>reverse_1533
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------------TTCATGGCACCCGTCTGTAG------------------------------------------------
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