Multiple sequence alignment - TraesCS5D01G211100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G211100 chr5D 100.000 4392 0 0 1 4392 319324820 319320429 0.000000e+00 8111
1 TraesCS5D01G211100 chr5B 95.406 2917 92 22 613 3509 369619609 369616715 0.000000e+00 4606
2 TraesCS5D01G211100 chr5B 94.045 890 33 11 3510 4392 369616557 369615681 0.000000e+00 1332
3 TraesCS5D01G211100 chr5B 91.104 607 34 6 1 598 369620503 369619908 0.000000e+00 804
4 TraesCS5D01G211100 chr5A 94.870 1462 53 11 2948 4392 414776220 414777676 0.000000e+00 2265
5 TraesCS5D01G211100 chr5A 92.907 1438 68 12 613 2028 414773652 414775077 0.000000e+00 2060
6 TraesCS5D01G211100 chr5A 90.931 408 33 4 2035 2439 414775254 414775660 2.990000e-151 545
7 TraesCS5D01G211100 chr5A 92.042 289 22 1 2965 3252 650684474 650684186 5.290000e-109 405
8 TraesCS5D01G211100 chr5A 93.878 196 9 1 2441 2636 414775822 414776014 4.300000e-75 292
9 TraesCS5D01G211100 chr5A 90.566 159 14 1 115 272 414773072 414773230 4.450000e-50 209
10 TraesCS5D01G211100 chr1B 91.837 294 22 2 2965 3257 9639216 9638924 4.090000e-110 409
11 TraesCS5D01G211100 chr1B 90.068 292 27 1 2963 3254 13516040 13516329 1.150000e-100 377
12 TraesCS5D01G211100 chr1B 82.297 209 30 5 2717 2922 151076846 151076642 1.620000e-39 174
13 TraesCS5D01G211100 chr1A 92.580 283 20 1 2965 3246 61026697 61026979 5.290000e-109 405
14 TraesCS5D01G211100 chr4A 90.311 289 26 2 2965 3252 589668008 589667721 1.150000e-100 377
15 TraesCS5D01G211100 chr6B 86.047 301 41 1 3108 3408 314885184 314885483 5.480000e-84 322
16 TraesCS5D01G211100 chr6B 92.174 115 8 1 2233 2347 314885067 314885180 1.260000e-35 161
17 TraesCS5D01G211100 chr6B 91.667 84 6 1 1453 1536 314884780 314884862 9.980000e-22 115
18 TraesCS5D01G211100 chr7A 84.711 242 31 6 2686 2923 172416461 172416700 2.040000e-58 237
19 TraesCS5D01G211100 chr7A 82.659 173 25 5 2746 2916 609257059 609256890 9.840000e-32 148
20 TraesCS5D01G211100 chr2A 81.154 260 39 5 2664 2921 59878556 59878305 2.680000e-47 200
21 TraesCS5D01G211100 chr2A 89.147 129 14 0 2730 2858 59877535 59877407 1.260000e-35 161


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G211100 chr5D 319320429 319324820 4391 True 8111.000000 8111 100.000000 1 4392 1 chr5D.!!$R1 4391
1 TraesCS5D01G211100 chr5B 369615681 369620503 4822 True 2247.333333 4606 93.518333 1 4392 3 chr5B.!!$R1 4391
2 TraesCS5D01G211100 chr5A 414773072 414777676 4604 False 1074.200000 2265 92.630400 115 4392 5 chr5A.!!$F1 4277

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
704 1202 1.354705 GACAAAGCCTTTAGTCCCCCT 59.645 52.381 7.93 0.00 0.00 4.79 F
2102 2807 0.854705 GCAAAAGCCTTGCGTTTCAG 59.145 50.000 5.45 0.00 38.06 3.02 F
3218 4251 0.107643 TGAACAGCACCGGAATGTCA 59.892 50.000 9.46 7.36 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2106 2811 0.449388 CGATTTGGAGCTCAGGCAAC 59.551 55.000 17.19 0.0 41.70 4.17 R
3261 4294 0.171455 ACTCGAGACATTCCAGCGAC 59.829 55.000 21.68 0.0 0.00 5.19 R
4019 5226 1.741706 CACCATGCAGTCATTCAGGAC 59.258 52.381 0.00 0.0 38.08 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.722194 TCTTGATAAACTGTTGCATTCGC 58.278 39.130 0.00 0.00 39.24 4.70
28 29 4.455533 TCTTGATAAACTGTTGCATTCGCT 59.544 37.500 0.00 0.00 39.64 4.93
29 30 4.082274 TGATAAACTGTTGCATTCGCTG 57.918 40.909 0.00 0.00 39.64 5.18
53 54 4.021368 GGGACAGCAAAGAGTCACTAGTAA 60.021 45.833 0.00 0.00 35.33 2.24
86 87 8.206189 TCATAACATGAGCTCACAAATCAGATA 58.794 33.333 20.97 2.99 33.59 1.98
89 90 7.876936 ACATGAGCTCACAAATCAGATAATT 57.123 32.000 20.97 0.00 0.00 1.40
102 103 9.788960 CAAATCAGATAATTATGCAGATGGATG 57.211 33.333 1.78 1.81 0.00 3.51
103 104 9.749340 AAATCAGATAATTATGCAGATGGATGA 57.251 29.630 1.78 0.00 0.00 2.92
104 105 9.922477 AATCAGATAATTATGCAGATGGATGAT 57.078 29.630 1.78 0.00 0.00 2.45
105 106 8.959705 TCAGATAATTATGCAGATGGATGATC 57.040 34.615 1.78 0.00 0.00 2.92
106 107 8.545472 TCAGATAATTATGCAGATGGATGATCA 58.455 33.333 1.78 0.00 32.86 2.92
107 108 9.343539 CAGATAATTATGCAGATGGATGATCAT 57.656 33.333 8.25 8.25 32.86 2.45
164 166 2.958355 CCCCTCATGCGTGGAAAATATT 59.042 45.455 5.98 0.00 0.00 1.28
215 217 5.678483 GCTAATTTTGCACATCATCTACACG 59.322 40.000 0.00 0.00 0.00 4.49
221 223 5.717038 TGCACATCATCTACACGTTTATG 57.283 39.130 0.00 0.00 0.00 1.90
358 505 2.979678 CCCTACATAAGTACCCATGGCT 59.020 50.000 6.09 0.00 0.00 4.75
442 596 5.533112 TCTCCCTCTTAATCCTGAGTTCAT 58.467 41.667 0.00 0.00 0.00 2.57
468 622 4.784838 CCATCACCAATCCATAGATCCCTA 59.215 45.833 0.00 0.00 0.00 3.53
478 632 3.246130 CCATAGATCCCTATCACCCAGGA 60.246 52.174 0.00 0.00 33.47 3.86
511 666 2.965831 ACCTTTCTTTCAGGGGAAAAGC 59.034 45.455 0.00 0.00 42.18 3.51
584 739 4.022849 GTGGTTCAGCTGCAGTTTCTTATT 60.023 41.667 16.64 0.00 0.00 1.40
704 1202 1.354705 GACAAAGCCTTTAGTCCCCCT 59.645 52.381 7.93 0.00 0.00 4.79
762 1260 5.988561 TGAATTTTATTGGTTCTGTTGTGCC 59.011 36.000 0.00 0.00 0.00 5.01
776 1274 2.813754 GTTGTGCCTGACATGCTTCTTA 59.186 45.455 4.30 0.00 33.40 2.10
786 1284 3.589988 ACATGCTTCTTAGTCCTGTTCG 58.410 45.455 0.00 0.00 0.00 3.95
954 1473 7.388290 TGTGCGAGTTATTCAAACATTTTTC 57.612 32.000 0.00 0.00 0.00 2.29
986 1505 9.860898 ATTAGTTGAATTTTAGTGAATTCTGGC 57.139 29.630 7.05 0.00 43.28 4.85
1123 1652 4.105697 AGGTCAGGATTTGGGTGAAAAGTA 59.894 41.667 0.00 0.00 0.00 2.24
1279 1808 3.057946 CACAGCTCTACAAAAAGAAGGGC 60.058 47.826 0.00 0.00 0.00 5.19
1370 1904 2.634940 TGCAATATAGGAGAGTGGAGGC 59.365 50.000 0.00 0.00 0.00 4.70
1396 1930 5.124936 AGCTTTTGTAGTTCGGTGAAACTTT 59.875 36.000 0.00 0.00 40.01 2.66
1738 2272 6.423776 TGTCCATAGATATGCTCACAATCA 57.576 37.500 0.00 0.00 32.40 2.57
2038 2742 9.181805 GTTGAAGATAGCAAACTTTACCTTTTC 57.818 33.333 0.00 0.00 0.00 2.29
2102 2807 0.854705 GCAAAAGCCTTGCGTTTCAG 59.145 50.000 5.45 0.00 38.06 3.02
2106 2811 0.307760 AAGCCTTGCGTTTCAGTTCG 59.692 50.000 0.00 0.00 0.00 3.95
2274 2981 6.019318 CACAAAATTGAGGAGCACAAGAAAAG 60.019 38.462 0.00 0.00 0.00 2.27
2415 3122 3.733443 ATCCTTTGTGTTTCCAAGTGC 57.267 42.857 0.00 0.00 0.00 4.40
2439 3146 7.063426 TGCTATCATTAAGACTGAAACTCGTTG 59.937 37.037 0.00 0.00 0.00 4.10
2460 3327 8.755977 TCGTTGAATTAGTAGGAAGGTCTTTAT 58.244 33.333 0.00 0.00 0.00 1.40
2522 3389 6.109156 TGATACCTCAAGCAACTTCTGTAA 57.891 37.500 0.00 0.00 0.00 2.41
2596 3463 3.332034 TCTAAAGCCTGGTAAGTTTCGC 58.668 45.455 0.00 0.00 0.00 4.70
2645 3674 8.083462 TCCATACAGAATTATATGCAAACGTC 57.917 34.615 0.00 0.00 0.00 4.34
2670 3703 8.885722 TCGGAAGTATACACAATATTTTTGGAC 58.114 33.333 5.50 0.00 0.00 4.02
2677 3710 5.803552 ACACAATATTTTTGGACCCCAATG 58.196 37.500 0.00 0.00 43.55 2.82
2716 3749 0.542805 GGGGCATGGCAATTGTGAAT 59.457 50.000 22.06 0.00 0.00 2.57
2737 3770 6.258287 TGAATGTTTTCTGTGGCAAATTCTTG 59.742 34.615 0.00 0.00 32.77 3.02
2738 3771 4.440880 TGTTTTCTGTGGCAAATTCTTGG 58.559 39.130 0.00 0.00 32.76 3.61
2810 3843 1.394572 GGATTTTGCTGCGAAATTGCC 59.605 47.619 24.52 18.94 28.70 4.52
2887 3920 1.102154 TGTTTTGCTATGCATCCCCG 58.898 50.000 0.19 0.00 38.76 5.73
2894 3927 2.658679 CTATGCATCCCCGGCGAACA 62.659 60.000 9.30 0.00 0.00 3.18
2896 3929 3.279875 GCATCCCCGGCGAACATC 61.280 66.667 9.30 0.00 0.00 3.06
2993 4026 8.256611 TCTCTGCAAAGTGAAGTGATTAATAC 57.743 34.615 0.00 0.00 0.00 1.89
3218 4251 0.107643 TGAACAGCACCGGAATGTCA 59.892 50.000 9.46 7.36 0.00 3.58
3246 4279 4.201851 CCTTAAGCTGGACATTGATCAACG 60.202 45.833 11.07 4.84 0.00 4.10
3248 4281 3.057969 AGCTGGACATTGATCAACGAA 57.942 42.857 11.07 0.00 0.00 3.85
3277 4310 1.874019 CCGTCGCTGGAATGTCTCG 60.874 63.158 0.00 0.00 0.00 4.04
3436 4471 6.701145 TGTACTCATATGGACTCAACTCTC 57.299 41.667 2.13 0.00 0.00 3.20
3666 4861 6.089150 GCTCTTGCAGATTCTTTTAGCTTTTG 59.911 38.462 0.00 0.00 39.41 2.44
3722 4920 5.009811 GTGTGAGTCTGTACCTTGTTCTACT 59.990 44.000 0.00 0.00 0.00 2.57
3776 4976 9.533831 ACCTAATTACTTCAACATTCCTCATTT 57.466 29.630 0.00 0.00 0.00 2.32
3962 5162 8.487176 GCACCTTTGTTTTGTAAGTTATTCATG 58.513 33.333 0.00 0.00 0.00 3.07
4019 5226 7.807680 TCTATATGTAAGAGCACAGTATGACG 58.192 38.462 0.00 0.00 39.69 4.35
4025 5232 1.472878 GAGCACAGTATGACGTCCTGA 59.527 52.381 22.12 2.05 39.69 3.86
4038 5245 1.676916 CGTCCTGAATGACTGCATGGT 60.677 52.381 0.00 0.00 34.26 3.55
4048 5255 2.305635 TGACTGCATGGTGACCTACAAT 59.694 45.455 2.11 0.00 0.00 2.71
4054 5261 5.504853 TGCATGGTGACCTACAATGAAATA 58.495 37.500 2.11 0.00 42.39 1.40
4120 5327 9.912634 GTCAAAATAAGAAAGAATGATGTTGGA 57.087 29.630 0.00 0.00 0.00 3.53
4230 5437 7.721286 TCTGTCAAAAGAGAATGAGAAAGAC 57.279 36.000 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.119884 CCAGCGAATGCAACAGTTTATCA 60.120 43.478 0.00 0.00 46.23 2.15
15 16 1.675310 TCCCCAGCGAATGCAACAG 60.675 57.895 0.00 0.00 46.23 3.16
18 19 1.675310 CTGTCCCCAGCGAATGCAA 60.675 57.895 0.00 0.00 46.23 4.08
27 28 0.397941 TGACTCTTTGCTGTCCCCAG 59.602 55.000 0.00 0.00 41.91 4.45
28 29 0.108585 GTGACTCTTTGCTGTCCCCA 59.891 55.000 0.00 0.00 32.67 4.96
29 30 0.398318 AGTGACTCTTTGCTGTCCCC 59.602 55.000 0.00 0.00 32.67 4.81
36 37 9.151471 TGAATTGTATTACTAGTGACTCTTTGC 57.849 33.333 5.39 0.00 0.00 3.68
53 54 8.510243 TTGTGAGCTCATGTTATGAATTGTAT 57.490 30.769 21.47 0.00 39.11 2.29
68 69 7.499895 TGCATAATTATCTGATTTGTGAGCTCA 59.500 33.333 13.74 13.74 0.00 4.26
86 87 7.499563 GCTCTATGATCATCCATCTGCATAATT 59.500 37.037 12.53 0.00 31.92 1.40
89 90 5.424252 TGCTCTATGATCATCCATCTGCATA 59.576 40.000 12.53 0.00 31.92 3.14
102 103 5.936372 TGGCAGATTGTTATGCTCTATGATC 59.064 40.000 0.00 0.00 42.19 2.92
103 104 5.704515 GTGGCAGATTGTTATGCTCTATGAT 59.295 40.000 0.00 0.00 42.19 2.45
104 105 5.059161 GTGGCAGATTGTTATGCTCTATGA 58.941 41.667 0.00 0.00 42.19 2.15
105 106 4.084171 CGTGGCAGATTGTTATGCTCTATG 60.084 45.833 0.00 0.00 42.19 2.23
106 107 4.060900 CGTGGCAGATTGTTATGCTCTAT 58.939 43.478 0.00 0.00 42.19 1.98
107 108 3.118775 ACGTGGCAGATTGTTATGCTCTA 60.119 43.478 0.00 0.00 42.19 2.43
164 166 1.753847 GCCCAAATACCATAGGCTGCA 60.754 52.381 0.50 0.00 40.57 4.41
215 217 5.403897 TGAAATCGATTCTCGCCATAAAC 57.596 39.130 11.83 0.00 40.21 2.01
221 223 3.309682 TCATGTTGAAATCGATTCTCGCC 59.690 43.478 11.83 6.61 40.21 5.54
326 459 8.712103 GGGTACTTATGTAGGGAAGTCTTAATT 58.288 37.037 0.00 0.00 37.16 1.40
328 461 7.191210 TGGGTACTTATGTAGGGAAGTCTTAA 58.809 38.462 0.00 0.00 37.16 1.85
347 494 0.536006 GCCAGATCAGCCATGGGTAC 60.536 60.000 17.80 11.14 34.52 3.34
358 505 8.355169 GCTCATTAATTTTTATCTGCCAGATCA 58.645 33.333 11.20 0.00 36.20 2.92
398 545 6.441924 GGAGATCCCATGGAGATGTAGATTAA 59.558 42.308 15.22 0.00 34.05 1.40
442 596 4.042062 GGATCTATGGATTGGTGATGGTGA 59.958 45.833 0.00 0.00 31.46 4.02
468 622 1.285280 TGGTTCGAATCCTGGGTGAT 58.715 50.000 5.84 0.00 0.00 3.06
478 632 5.070001 TGAAAGAAAGGTGATGGTTCGAAT 58.930 37.500 0.00 0.00 0.00 3.34
511 666 3.937706 CTCTTACCAGTTGATTGCAGGAG 59.062 47.826 0.00 0.00 0.00 3.69
653 1150 6.257630 CCAAAACAAAATGGTTTCTTCGATGT 59.742 34.615 0.00 0.00 34.58 3.06
704 1202 0.191064 ACAAGAGGGAGAGTGGGACA 59.809 55.000 0.00 0.00 0.00 4.02
762 1260 4.199432 ACAGGACTAAGAAGCATGTCAG 57.801 45.455 0.00 0.00 0.00 3.51
776 1274 1.302033 CAAGGCTGCGAACAGGACT 60.302 57.895 0.00 0.00 44.63 3.85
799 1309 3.908643 AGAAAGATTACCGGAACCCTC 57.091 47.619 9.46 0.00 0.00 4.30
1123 1652 7.707624 TTGATGGCTCTATCAAAATCAAACT 57.292 32.000 6.25 0.00 42.39 2.66
1279 1808 1.464687 CCTTCTGAAAGCGCATCAACG 60.465 52.381 11.47 3.16 0.00 4.10
1363 1897 1.079503 CTACAAAAGCTCGCCTCCAC 58.920 55.000 0.00 0.00 0.00 4.02
1370 1904 2.400399 TCACCGAACTACAAAAGCTCG 58.600 47.619 0.00 0.00 42.26 5.03
1396 1930 2.609747 AGGAGGAGCACTTTCAGTACA 58.390 47.619 0.00 0.00 0.00 2.90
1677 2211 0.458669 CATGAGGCATCCAAACCTGC 59.541 55.000 0.00 0.00 36.05 4.85
1738 2272 6.238648 GCAAGTACACATTACACAGGAACTTT 60.239 38.462 0.00 0.00 34.60 2.66
2028 2562 7.670559 TGATCCCGGAAATTTAGAAAAGGTAAA 59.329 33.333 0.73 0.00 0.00 2.01
2038 2742 3.808728 TCTGCTGATCCCGGAAATTTAG 58.191 45.455 0.73 0.66 0.00 1.85
2102 2807 0.884704 TTGGAGCTCAGGCAACGAAC 60.885 55.000 17.19 0.00 46.39 3.95
2106 2811 0.449388 CGATTTGGAGCTCAGGCAAC 59.551 55.000 17.19 0.00 41.70 4.17
2190 2896 4.528206 TGAGACATCTCCTTACTTCAAGCA 59.472 41.667 6.44 0.00 42.20 3.91
2205 2911 4.707030 TGGAATGCATGTTTGAGACATC 57.293 40.909 0.00 0.00 45.88 3.06
2374 3081 8.208575 AGGATTTGTAGAGAACTTCCTACTTT 57.791 34.615 13.90 4.51 36.94 2.66
2415 3122 8.689251 TCAACGAGTTTCAGTCTTAATGATAG 57.311 34.615 0.00 0.00 0.00 2.08
2630 3497 7.868922 TGTATACTTCCGACGTTTGCATATAAT 59.131 33.333 4.17 0.00 0.00 1.28
2637 3666 2.988493 TGTGTATACTTCCGACGTTTGC 59.012 45.455 4.17 0.00 0.00 3.68
2645 3674 8.126700 GGTCCAAAAATATTGTGTATACTTCCG 58.873 37.037 4.17 0.00 0.00 4.30
2670 3703 1.178534 ACGTTTGCTGTCCATTGGGG 61.179 55.000 2.09 0.00 38.37 4.96
2677 3710 3.330275 AGCGAACGTTTGCTGTCC 58.670 55.556 36.24 11.57 45.91 4.02
2716 3749 4.440880 CCAAGAATTTGCCACAGAAAACA 58.559 39.130 0.00 0.00 32.79 2.83
2737 3770 1.002315 ACAAATTGCCATGTGCTTCCC 59.998 47.619 7.54 0.00 42.00 3.97
2738 3771 2.460757 ACAAATTGCCATGTGCTTCC 57.539 45.000 7.54 0.00 42.00 3.46
2784 3817 1.896220 TCGCAGCAAAATCCTCTGTT 58.104 45.000 0.00 0.00 0.00 3.16
2787 3820 3.841643 CAATTTCGCAGCAAAATCCTCT 58.158 40.909 0.00 0.00 0.00 3.69
2788 3821 2.346545 GCAATTTCGCAGCAAAATCCTC 59.653 45.455 0.00 0.00 0.00 3.71
2810 3843 2.629022 CAGTTCTTTCAAGCGAACACG 58.371 47.619 0.00 0.00 41.40 4.49
2865 3898 3.261580 GGGGATGCATAGCAAAACAAAC 58.738 45.455 0.00 0.00 43.62 2.93
2868 3901 1.102154 CGGGGATGCATAGCAAAACA 58.898 50.000 0.00 0.00 43.62 2.83
2876 3909 2.050836 ATGTTCGCCGGGGATGCATA 62.051 55.000 26.41 12.36 0.00 3.14
2894 3927 4.431416 TGGGTAATGTTATTCAGCGGAT 57.569 40.909 0.00 0.00 0.00 4.18
2896 3929 6.817765 AATATGGGTAATGTTATTCAGCGG 57.182 37.500 0.00 0.00 0.00 5.52
3218 4251 7.520798 TGATCAATGTCCAGCTTAAGGAATAT 58.479 34.615 4.29 0.00 36.80 1.28
3261 4294 0.171455 ACTCGAGACATTCCAGCGAC 59.829 55.000 21.68 0.00 0.00 5.19
3277 4310 3.499918 CACAGGAGAATGTTGGAACACTC 59.500 47.826 0.00 0.00 42.51 3.51
3751 4951 9.793252 CAAATGAGGAATGTTGAAGTAATTAGG 57.207 33.333 0.00 0.00 0.00 2.69
3757 4957 8.324306 AGAGATCAAATGAGGAATGTTGAAGTA 58.676 33.333 0.00 0.00 33.93 2.24
3758 4958 7.120873 CAGAGATCAAATGAGGAATGTTGAAGT 59.879 37.037 0.00 0.00 33.93 3.01
3936 5136 7.995463 TGAATAACTTACAAAACAAAGGTGC 57.005 32.000 0.00 0.00 0.00 5.01
3962 5162 9.801873 AGAATATGTAATTGCACACATTTTACC 57.198 29.630 11.75 2.80 36.74 2.85
4019 5226 1.741706 CACCATGCAGTCATTCAGGAC 59.258 52.381 0.00 0.00 38.08 3.85
4025 5232 2.305635 TGTAGGTCACCATGCAGTCATT 59.694 45.455 0.00 0.00 0.00 2.57
4038 5245 4.629634 CGTGCAGTATTTCATTGTAGGTCA 59.370 41.667 0.00 0.00 0.00 4.02
4120 5327 4.992951 GCCTTCAAAAGCATCAAGTGAAAT 59.007 37.500 0.00 0.00 0.00 2.17
4230 5437 6.309494 CCATATCTCTTTGTGTGCATTTGTTG 59.691 38.462 0.00 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.