Multiple sequence alignment - TraesCS5D01G209900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G209900 chr5D 100.000 3654 0 0 545 4198 318059386 318063039 0.000000e+00 6748
1 TraesCS5D01G209900 chr5D 100.000 185 0 0 1 185 318058842 318059026 4.020000e-90 342
2 TraesCS5D01G209900 chr5A 93.247 1851 82 20 2193 4025 412914569 412916394 0.000000e+00 2686
3 TraesCS5D01G209900 chr5A 93.143 1575 85 14 545 2108 412912982 412914544 0.000000e+00 2289
4 TraesCS5D01G209900 chr5B 92.252 1794 87 12 545 2317 367908639 367910401 0.000000e+00 2495
5 TraesCS5D01G209900 chr5B 91.040 1730 88 29 2316 4025 367910505 367912187 0.000000e+00 2274
6 TraesCS5D01G209900 chr5B 90.769 195 8 1 1 185 367908173 367908367 6.970000e-63 252
7 TraesCS5D01G209900 chr7A 94.828 174 5 1 4029 4198 120876301 120876128 6.920000e-68 268
8 TraesCS5D01G209900 chr2B 96.203 158 6 0 4041 4198 60148189 60148032 4.160000e-65 259
9 TraesCS5D01G209900 chr2B 93.103 174 8 1 4029 4198 343518141 343517968 6.970000e-63 252
10 TraesCS5D01G209900 chr2B 86.598 194 25 1 1048 1240 492148249 492148056 3.290000e-51 213
11 TraesCS5D01G209900 chr6D 94.969 159 7 1 4041 4198 57917980 57917822 9.010000e-62 248
12 TraesCS5D01G209900 chr6D 93.464 153 10 0 4041 4193 456330560 456330408 1.170000e-55 228
13 TraesCS5D01G209900 chr3D 93.103 174 5 2 4029 4198 308582312 308582482 9.010000e-62 248
14 TraesCS5D01G209900 chr7B 93.671 158 10 0 4041 4198 247416611 247416454 1.950000e-58 237
15 TraesCS5D01G209900 chr7B 91.139 158 10 1 4029 4182 489409497 489409340 1.180000e-50 211
16 TraesCS5D01G209900 chr6A 91.925 161 8 2 4029 4184 602986466 602986306 1.960000e-53 220
17 TraesCS5D01G209900 chr2D 87.113 194 24 1 1048 1240 419783595 419783402 7.070000e-53 219
18 TraesCS5D01G209900 chr2A 86.802 197 25 1 1045 1240 570192959 570193155 7.070000e-53 219


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G209900 chr5D 318058842 318063039 4197 False 3545.000000 6748 100.000000 1 4198 2 chr5D.!!$F1 4197
1 TraesCS5D01G209900 chr5A 412912982 412916394 3412 False 2487.500000 2686 93.195000 545 4025 2 chr5A.!!$F1 3480
2 TraesCS5D01G209900 chr5B 367908173 367912187 4014 False 1673.666667 2495 91.353667 1 4025 3 chr5B.!!$F1 4024

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
82 93 0.603707 CAAGACCATGCACCGACACT 60.604 55.0 0.0 0.0 0.0 3.55 F
1719 1737 0.605319 TCCGTGACAAATGCAGGACC 60.605 55.0 0.0 0.0 0.0 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1951 1986 1.121407 GGAAAGGGGTTGCTGCCTTT 61.121 55.0 0.0 0.0 35.55 3.11 R
3524 3686 0.180406 ATCAGATTACCACCGCACCC 59.820 55.0 0.0 0.0 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 72 1.611006 TGATATCGAGCTCACCTCTGC 59.389 52.381 15.40 0.00 38.49 4.26
65 76 2.947532 CGAGCTCACCTCTGCCCAA 61.948 63.158 15.40 0.00 38.49 4.12
82 93 0.603707 CAAGACCATGCACCGACACT 60.604 55.000 0.00 0.00 0.00 3.55
108 119 3.618780 CTGGTGACTGAGCCAGGCC 62.619 68.421 8.22 0.00 46.27 5.19
588 599 7.910441 ATTCCTGCATTTTACAAATCCTTTG 57.090 32.000 0.00 0.00 45.95 2.77
632 643 2.534150 GGACGTGCAATAACGATCGTTG 60.534 50.000 36.88 25.12 46.49 4.10
636 647 3.539592 CGTGCAATAACGATCGTTGTCTC 60.540 47.826 36.88 25.47 46.49 3.36
650 662 4.342951 TCGTTGTCTCCTCCTTTGAGTTTA 59.657 41.667 0.00 0.00 36.86 2.01
658 670 5.136828 TCCTCCTTTGAGTTTATGCAAACA 58.863 37.500 4.19 0.00 45.44 2.83
847 860 1.749258 GACATTTCACCCGGCCTCC 60.749 63.158 0.00 0.00 0.00 4.30
951 964 2.770164 AACTGAGCGCAGGAAATAGT 57.230 45.000 21.93 0.00 46.60 2.12
1243 1256 2.134933 GGGCTCGGAGGGTAAGGAG 61.135 68.421 7.20 0.00 0.00 3.69
1245 1258 1.110518 GGCTCGGAGGGTAAGGAGAG 61.111 65.000 7.20 0.00 0.00 3.20
1282 1295 8.292444 TCCTTGATTTTCTGGGTATATGTTTG 57.708 34.615 0.00 0.00 0.00 2.93
1419 1435 8.147058 TGCAAAGGCTTAATTATTTCTGAAACA 58.853 29.630 4.73 0.00 41.91 2.83
1446 1462 5.977489 TTAGTGAGAGTAGCTTGCTGTTA 57.023 39.130 5.26 0.00 0.00 2.41
1502 1518 8.024865 GCTTAATAACGTCCACTAACCAAAAAT 58.975 33.333 0.00 0.00 0.00 1.82
1534 1551 2.981875 GTCGCACAGACGAATGTTTTT 58.018 42.857 0.00 0.00 44.93 1.94
1585 1603 6.793478 TCCTACAGTGTTAAGTACCTTCCTA 58.207 40.000 0.00 0.00 0.00 2.94
1715 1733 1.466167 CTTCCTCCGTGACAAATGCAG 59.534 52.381 0.00 0.00 0.00 4.41
1719 1737 0.605319 TCCGTGACAAATGCAGGACC 60.605 55.000 0.00 0.00 0.00 4.46
1749 1767 3.471680 GCCCTATGCAAAACCAAAAACA 58.528 40.909 0.00 0.00 40.77 2.83
1856 1887 9.630098 GATTTAATCTTCATGTGTGAATTGTGT 57.370 29.630 0.00 0.00 43.08 3.72
1891 1923 2.203877 ACGGTAAGTGAGGCCCCA 60.204 61.111 0.00 0.00 0.00 4.96
1920 1955 5.342433 GTTGGTGTAACAAACCCAAGTTAC 58.658 41.667 8.15 8.15 45.15 2.50
1935 1970 4.323945 CCAAGTTACAGGTACCATGCCTTA 60.324 45.833 15.94 0.00 33.31 2.69
1951 1986 4.101114 TGCCTTAAATCTGAGTAGGTGGA 58.899 43.478 0.00 0.00 0.00 4.02
1975 2010 0.758685 CAGCAACCCCTTTCCACCAA 60.759 55.000 0.00 0.00 0.00 3.67
1995 2030 4.391830 CCAATATGTTGTGCGTTAGTCTGT 59.608 41.667 1.26 0.00 33.36 3.41
2006 2041 3.242220 GCGTTAGTCTGTGAATCATGCAG 60.242 47.826 0.00 0.00 0.00 4.41
2035 2070 2.610833 CGTGTGCATAGCATGACTCAAT 59.389 45.455 0.00 0.00 41.91 2.57
2298 2340 7.878127 CAGAGTTTATAGTTTCTCCCTGTTTCA 59.122 37.037 0.00 0.00 0.00 2.69
2304 2346 7.839680 ATAGTTTCTCCCTGTTTCACAATTT 57.160 32.000 0.00 0.00 0.00 1.82
2592 2744 2.235016 GACACAGGTCACTCTCTCACT 58.765 52.381 0.00 0.00 43.73 3.41
2594 2746 2.363680 ACACAGGTCACTCTCTCACTTG 59.636 50.000 0.00 0.00 0.00 3.16
2595 2747 2.625314 CACAGGTCACTCTCTCACTTGA 59.375 50.000 0.00 0.00 0.00 3.02
2596 2748 2.625790 ACAGGTCACTCTCTCACTTGAC 59.374 50.000 0.00 0.00 38.11 3.18
2597 2749 2.625314 CAGGTCACTCTCTCACTTGACA 59.375 50.000 3.23 0.00 40.18 3.58
2598 2750 2.625790 AGGTCACTCTCTCACTTGACAC 59.374 50.000 3.23 0.00 40.18 3.67
2599 2751 2.625790 GGTCACTCTCTCACTTGACACT 59.374 50.000 3.23 0.00 40.18 3.55
2600 2752 3.305064 GGTCACTCTCTCACTTGACACTC 60.305 52.174 3.23 0.00 40.18 3.51
2601 2753 3.568007 GTCACTCTCTCACTTGACACTCT 59.432 47.826 0.00 0.00 38.60 3.24
2602 2754 4.037446 GTCACTCTCTCACTTGACACTCTT 59.963 45.833 0.00 0.00 38.60 2.85
2603 2755 4.646945 TCACTCTCTCACTTGACACTCTTT 59.353 41.667 0.00 0.00 0.00 2.52
2604 2756 5.828328 TCACTCTCTCACTTGACACTCTTTA 59.172 40.000 0.00 0.00 0.00 1.85
2606 2758 7.014711 TCACTCTCTCACTTGACACTCTTTATT 59.985 37.037 0.00 0.00 0.00 1.40
2607 2759 7.328249 CACTCTCTCACTTGACACTCTTTATTC 59.672 40.741 0.00 0.00 0.00 1.75
2608 2760 7.014711 ACTCTCTCACTTGACACTCTTTATTCA 59.985 37.037 0.00 0.00 0.00 2.57
2609 2761 7.901029 TCTCTCACTTGACACTCTTTATTCAT 58.099 34.615 0.00 0.00 0.00 2.57
2610 2762 8.031864 TCTCTCACTTGACACTCTTTATTCATC 58.968 37.037 0.00 0.00 0.00 2.92
2611 2763 7.901029 TCTCACTTGACACTCTTTATTCATCT 58.099 34.615 0.00 0.00 0.00 2.90
2612 2764 9.025041 TCTCACTTGACACTCTTTATTCATCTA 57.975 33.333 0.00 0.00 0.00 1.98
2613 2765 9.645059 CTCACTTGACACTCTTTATTCATCTAA 57.355 33.333 0.00 0.00 0.00 2.10
2614 2766 9.996554 TCACTTGACACTCTTTATTCATCTAAA 57.003 29.630 0.00 0.00 0.00 1.85
2672 2826 3.651803 AGTATCTAACGGCTGAGATGC 57.348 47.619 0.00 1.58 35.66 3.91
2754 2908 4.487412 GAGTACGGGCCGGTCGTG 62.487 72.222 31.78 14.15 41.24 4.35
2818 2972 9.452287 TCATGATGAAGTAATCAAATCAGTCAA 57.548 29.630 0.00 0.00 42.54 3.18
2819 2973 9.717892 CATGATGAAGTAATCAAATCAGTCAAG 57.282 33.333 0.00 0.00 42.54 3.02
2821 2975 7.609146 TGATGAAGTAATCAAATCAGTCAAGCT 59.391 33.333 0.00 0.00 42.54 3.74
2822 2976 7.750229 TGAAGTAATCAAATCAGTCAAGCTT 57.250 32.000 0.00 0.00 34.30 3.74
2823 2977 8.846943 TGAAGTAATCAAATCAGTCAAGCTTA 57.153 30.769 0.00 0.00 34.30 3.09
2824 2978 9.283768 TGAAGTAATCAAATCAGTCAAGCTTAA 57.716 29.630 0.00 0.00 34.30 1.85
2827 2981 9.066892 AGTAATCAAATCAGTCAAGCTTAACAA 57.933 29.630 1.78 0.00 0.00 2.83
2828 2982 9.677567 GTAATCAAATCAGTCAAGCTTAACAAA 57.322 29.630 1.78 0.00 0.00 2.83
2837 2991 4.278419 GTCAAGCTTAACAAACCCACTCAT 59.722 41.667 0.00 0.00 0.00 2.90
3098 3256 2.032681 GTCAAGGGCCGCTTCACT 59.967 61.111 0.00 0.00 0.00 3.41
3256 3414 7.094677 GGACGGCTAAGTACCAAGAAAAATAAA 60.095 37.037 0.00 0.00 0.00 1.40
3293 3451 5.928839 CCTACCTGTGTATGTATGATCAAGC 59.071 44.000 0.00 0.00 0.00 4.01
3386 3544 2.248280 TGTACTGATGTGCACCGTTT 57.752 45.000 15.69 0.00 33.97 3.60
3409 3567 8.544597 GTTTGTTTTGTTTTCTGTTTGTGTACT 58.455 29.630 0.00 0.00 0.00 2.73
3428 3586 2.038557 ACTGGTAGCCCAAAGTGTACTG 59.961 50.000 0.00 0.00 41.27 2.74
3605 3767 3.778954 AAGCAGAGGCCCATATAACTC 57.221 47.619 0.00 0.00 42.56 3.01
3700 3863 4.707448 AGATAGTGACGTCCTCTCACAAAT 59.293 41.667 14.12 2.81 40.56 2.32
3701 3864 3.305398 AGTGACGTCCTCTCACAAATC 57.695 47.619 14.12 0.00 40.56 2.17
3748 3914 5.356751 TGACATACCACATTATCTTGGCAAC 59.643 40.000 0.00 0.00 36.20 4.17
3778 3944 1.311859 CAGCCAGCAACTCTGTTTCA 58.688 50.000 0.00 0.00 41.25 2.69
3809 3975 4.579869 ACCACAAGAAATATCGCACTCTT 58.420 39.130 0.00 0.00 0.00 2.85
3818 3984 7.820648 AGAAATATCGCACTCTTGAAAACAAT 58.179 30.769 0.00 0.00 0.00 2.71
3825 3991 8.722342 TCGCACTCTTGAAAACAATATAAAAC 57.278 30.769 0.00 0.00 0.00 2.43
3852 4018 3.009916 AGACCGGAGTGAGGTAGTTCTTA 59.990 47.826 9.46 0.00 43.01 2.10
3892 4058 2.697147 AAACAGTGCACATCCCCGCT 62.697 55.000 21.04 0.00 0.00 5.52
3897 4063 0.451783 GTGCACATCCCCGCTAAAAG 59.548 55.000 13.17 0.00 0.00 2.27
3900 4066 1.401905 GCACATCCCCGCTAAAAGAAG 59.598 52.381 0.00 0.00 0.00 2.85
3908 4075 1.126846 CCGCTAAAAGAAGACAGTGCG 59.873 52.381 0.00 0.00 41.50 5.34
3953 4120 7.451501 TGACATTTCTGAACAAGCATATCAA 57.548 32.000 0.00 0.00 0.00 2.57
3996 4163 5.449862 GCTGACACAACAAACAATTGGTCTA 60.450 40.000 10.83 0.00 41.01 2.59
4026 4193 9.817365 CAAATACATTGATAGTAGCATTAGTGC 57.183 33.333 1.21 1.21 45.78 4.40
4034 4201 4.792106 GCATTAGTGCGGCCTTTG 57.208 55.556 0.00 0.00 42.28 2.77
4035 4202 1.517039 GCATTAGTGCGGCCTTTGC 60.517 57.895 0.00 0.00 42.28 3.68
4036 4203 1.882311 CATTAGTGCGGCCTTTGCA 59.118 52.632 0.00 0.00 40.13 4.08
4037 4204 0.179156 CATTAGTGCGGCCTTTGCAG 60.179 55.000 3.82 0.00 44.21 4.41
4039 4206 0.821711 TTAGTGCGGCCTTTGCAGTT 60.822 50.000 15.45 5.29 43.20 3.16
4040 4207 0.035598 TAGTGCGGCCTTTGCAGTTA 59.964 50.000 15.45 4.43 43.20 2.24
4041 4208 0.609131 AGTGCGGCCTTTGCAGTTAT 60.609 50.000 3.82 0.00 43.20 1.89
4042 4209 0.456653 GTGCGGCCTTTGCAGTTATG 60.457 55.000 3.82 0.00 44.21 1.90
4043 4210 1.139520 GCGGCCTTTGCAGTTATGG 59.860 57.895 0.00 0.00 40.13 2.74
4044 4211 1.312371 GCGGCCTTTGCAGTTATGGA 61.312 55.000 0.00 0.00 40.13 3.41
4045 4212 1.392589 CGGCCTTTGCAGTTATGGAT 58.607 50.000 0.00 0.00 40.13 3.41
4046 4213 1.750778 CGGCCTTTGCAGTTATGGATT 59.249 47.619 0.00 0.00 40.13 3.01
4047 4214 2.480073 CGGCCTTTGCAGTTATGGATTG 60.480 50.000 0.00 0.00 40.13 2.67
4048 4215 2.159057 GGCCTTTGCAGTTATGGATTGG 60.159 50.000 0.00 0.00 40.13 3.16
4049 4216 2.497273 GCCTTTGCAGTTATGGATTGGT 59.503 45.455 0.00 0.00 37.47 3.67
4050 4217 3.676873 GCCTTTGCAGTTATGGATTGGTG 60.677 47.826 0.00 0.00 37.47 4.17
4051 4218 3.763360 CCTTTGCAGTTATGGATTGGTGA 59.237 43.478 0.00 0.00 0.00 4.02
4052 4219 4.403432 CCTTTGCAGTTATGGATTGGTGAT 59.597 41.667 0.00 0.00 0.00 3.06
4053 4220 5.105228 CCTTTGCAGTTATGGATTGGTGATT 60.105 40.000 0.00 0.00 0.00 2.57
4054 4221 5.581126 TTGCAGTTATGGATTGGTGATTC 57.419 39.130 0.00 0.00 0.00 2.52
4055 4222 4.598022 TGCAGTTATGGATTGGTGATTCA 58.402 39.130 0.00 0.00 0.00 2.57
4056 4223 4.641541 TGCAGTTATGGATTGGTGATTCAG 59.358 41.667 0.00 0.00 0.00 3.02
4057 4224 4.037208 GCAGTTATGGATTGGTGATTCAGG 59.963 45.833 0.00 0.00 0.00 3.86
4058 4225 4.581824 CAGTTATGGATTGGTGATTCAGGG 59.418 45.833 0.00 0.00 0.00 4.45
4059 4226 2.761786 ATGGATTGGTGATTCAGGGG 57.238 50.000 0.00 0.00 0.00 4.79
4060 4227 1.381867 TGGATTGGTGATTCAGGGGT 58.618 50.000 0.00 0.00 0.00 4.95
4061 4228 1.715931 TGGATTGGTGATTCAGGGGTT 59.284 47.619 0.00 0.00 0.00 4.11
4062 4229 2.291540 TGGATTGGTGATTCAGGGGTTC 60.292 50.000 0.00 0.00 0.00 3.62
4063 4230 2.024941 GGATTGGTGATTCAGGGGTTCT 60.025 50.000 0.00 0.00 0.00 3.01
4064 4231 3.202151 GGATTGGTGATTCAGGGGTTCTA 59.798 47.826 0.00 0.00 0.00 2.10
4065 4232 4.141158 GGATTGGTGATTCAGGGGTTCTAT 60.141 45.833 0.00 0.00 0.00 1.98
4066 4233 4.946160 TTGGTGATTCAGGGGTTCTATT 57.054 40.909 0.00 0.00 0.00 1.73
4067 4234 4.235079 TGGTGATTCAGGGGTTCTATTG 57.765 45.455 0.00 0.00 0.00 1.90
4068 4235 3.591527 TGGTGATTCAGGGGTTCTATTGT 59.408 43.478 0.00 0.00 0.00 2.71
4069 4236 4.044065 TGGTGATTCAGGGGTTCTATTGTT 59.956 41.667 0.00 0.00 0.00 2.83
4070 4237 5.016831 GGTGATTCAGGGGTTCTATTGTTT 58.983 41.667 0.00 0.00 0.00 2.83
4071 4238 6.184789 GGTGATTCAGGGGTTCTATTGTTTA 58.815 40.000 0.00 0.00 0.00 2.01
4072 4239 6.661805 GGTGATTCAGGGGTTCTATTGTTTAA 59.338 38.462 0.00 0.00 0.00 1.52
4073 4240 7.148069 GGTGATTCAGGGGTTCTATTGTTTAAG 60.148 40.741 0.00 0.00 0.00 1.85
4074 4241 7.610305 GTGATTCAGGGGTTCTATTGTTTAAGA 59.390 37.037 0.00 0.00 0.00 2.10
4075 4242 8.336235 TGATTCAGGGGTTCTATTGTTTAAGAT 58.664 33.333 0.00 0.00 0.00 2.40
4076 4243 9.190317 GATTCAGGGGTTCTATTGTTTAAGATT 57.810 33.333 0.00 0.00 0.00 2.40
4087 4254 9.661563 TCTATTGTTTAAGATTAAAGAAGCCGA 57.338 29.630 11.69 6.64 38.66 5.54
4102 4269 7.736447 AAGAAGCCGATATTAATTCTTCTGG 57.264 36.000 12.81 7.60 39.82 3.86
4103 4270 7.067496 AGAAGCCGATATTAATTCTTCTGGA 57.933 36.000 0.00 0.00 38.86 3.86
4104 4271 7.509546 AGAAGCCGATATTAATTCTTCTGGAA 58.490 34.615 0.00 0.00 38.86 3.53
4105 4272 7.442666 AGAAGCCGATATTAATTCTTCTGGAAC 59.557 37.037 0.00 0.00 38.86 3.62
4106 4273 6.831976 AGCCGATATTAATTCTTCTGGAACT 58.168 36.000 0.00 0.00 36.70 3.01
4107 4274 7.283329 AGCCGATATTAATTCTTCTGGAACTT 58.717 34.615 0.00 0.00 36.70 2.66
4108 4275 7.442666 AGCCGATATTAATTCTTCTGGAACTTC 59.557 37.037 0.00 0.00 36.70 3.01
4109 4276 7.442666 GCCGATATTAATTCTTCTGGAACTTCT 59.557 37.037 0.00 0.00 36.70 2.85
4110 4277 9.982651 CCGATATTAATTCTTCTGGAACTTCTA 57.017 33.333 0.00 0.00 36.70 2.10
4121 4288 9.712305 TCTTCTGGAACTTCTATTTAAGAACAG 57.288 33.333 0.00 0.00 39.36 3.16
4122 4289 9.712305 CTTCTGGAACTTCTATTTAAGAACAGA 57.288 33.333 0.00 0.00 39.76 3.41
4129 4296 9.959721 AACTTCTATTTAAGAACAGATTAGCCA 57.040 29.630 0.00 0.00 39.36 4.75
4140 4307 8.845413 AGAACAGATTAGCCATATTCATCTTC 57.155 34.615 0.00 0.00 0.00 2.87
4141 4308 8.658619 AGAACAGATTAGCCATATTCATCTTCT 58.341 33.333 0.00 0.00 0.00 2.85
4142 4309 8.845413 AACAGATTAGCCATATTCATCTTCTC 57.155 34.615 0.00 0.00 0.00 2.87
4143 4310 7.095910 ACAGATTAGCCATATTCATCTTCTCG 58.904 38.462 0.00 0.00 0.00 4.04
4144 4311 7.039434 ACAGATTAGCCATATTCATCTTCTCGA 60.039 37.037 0.00 0.00 0.00 4.04
4145 4312 7.488792 CAGATTAGCCATATTCATCTTCTCGAG 59.511 40.741 5.93 5.93 0.00 4.04
4146 4313 6.656632 TTAGCCATATTCATCTTCTCGAGT 57.343 37.500 13.13 0.00 0.00 4.18
4147 4314 5.132897 AGCCATATTCATCTTCTCGAGTC 57.867 43.478 13.13 0.00 0.00 3.36
4148 4315 4.832266 AGCCATATTCATCTTCTCGAGTCT 59.168 41.667 13.13 0.00 0.00 3.24
4149 4316 5.048083 AGCCATATTCATCTTCTCGAGTCTC 60.048 44.000 13.13 0.00 0.00 3.36
4150 4317 5.048083 GCCATATTCATCTTCTCGAGTCTCT 60.048 44.000 13.13 0.00 0.00 3.10
4151 4318 6.150307 GCCATATTCATCTTCTCGAGTCTCTA 59.850 42.308 13.13 0.00 0.00 2.43
4152 4319 7.626240 GCCATATTCATCTTCTCGAGTCTCTAG 60.626 44.444 13.13 3.94 0.00 2.43
4153 4320 7.148255 CCATATTCATCTTCTCGAGTCTCTAGG 60.148 44.444 13.13 0.00 0.00 3.02
4154 4321 4.764050 TCATCTTCTCGAGTCTCTAGGT 57.236 45.455 13.13 0.00 0.00 3.08
4155 4322 5.105567 TCATCTTCTCGAGTCTCTAGGTT 57.894 43.478 13.13 0.00 0.00 3.50
4156 4323 5.120399 TCATCTTCTCGAGTCTCTAGGTTC 58.880 45.833 13.13 0.00 0.00 3.62
4157 4324 4.829872 TCTTCTCGAGTCTCTAGGTTCT 57.170 45.455 13.13 0.00 0.00 3.01
4158 4325 5.168647 TCTTCTCGAGTCTCTAGGTTCTT 57.831 43.478 13.13 0.00 0.00 2.52
4159 4326 5.562635 TCTTCTCGAGTCTCTAGGTTCTTT 58.437 41.667 13.13 0.00 0.00 2.52
4160 4327 6.005198 TCTTCTCGAGTCTCTAGGTTCTTTT 58.995 40.000 13.13 0.00 0.00 2.27
4161 4328 5.883503 TCTCGAGTCTCTAGGTTCTTTTC 57.116 43.478 13.13 0.00 0.00 2.29
4162 4329 5.562635 TCTCGAGTCTCTAGGTTCTTTTCT 58.437 41.667 13.13 0.00 0.00 2.52
4163 4330 5.413213 TCTCGAGTCTCTAGGTTCTTTTCTG 59.587 44.000 13.13 0.00 0.00 3.02
4164 4331 5.314529 TCGAGTCTCTAGGTTCTTTTCTGA 58.685 41.667 0.00 0.00 0.00 3.27
4165 4332 5.946972 TCGAGTCTCTAGGTTCTTTTCTGAT 59.053 40.000 0.00 0.00 0.00 2.90
4166 4333 6.434652 TCGAGTCTCTAGGTTCTTTTCTGATT 59.565 38.462 0.00 0.00 0.00 2.57
4167 4334 7.610692 TCGAGTCTCTAGGTTCTTTTCTGATTA 59.389 37.037 0.00 0.00 0.00 1.75
4168 4335 7.698970 CGAGTCTCTAGGTTCTTTTCTGATTAC 59.301 40.741 0.00 0.00 0.00 1.89
4169 4336 8.658840 AGTCTCTAGGTTCTTTTCTGATTACT 57.341 34.615 0.00 0.00 0.00 2.24
4170 4337 8.527810 AGTCTCTAGGTTCTTTTCTGATTACTG 58.472 37.037 0.00 0.00 0.00 2.74
4171 4338 8.524487 GTCTCTAGGTTCTTTTCTGATTACTGA 58.476 37.037 0.00 0.00 0.00 3.41
4172 4339 9.261035 TCTCTAGGTTCTTTTCTGATTACTGAT 57.739 33.333 0.00 0.00 0.00 2.90
4173 4340 9.883142 CTCTAGGTTCTTTTCTGATTACTGATT 57.117 33.333 0.00 0.00 0.00 2.57
4183 4350 9.699410 TTTTCTGATTACTGATTAATGATGGGT 57.301 29.630 0.00 0.00 29.85 4.51
4184 4351 9.699410 TTTCTGATTACTGATTAATGATGGGTT 57.301 29.630 0.00 0.00 29.85 4.11
4185 4352 8.681486 TCTGATTACTGATTAATGATGGGTTG 57.319 34.615 0.00 0.00 29.85 3.77
4186 4353 7.229306 TCTGATTACTGATTAATGATGGGTTGC 59.771 37.037 0.00 0.00 29.85 4.17
4187 4354 6.265196 TGATTACTGATTAATGATGGGTTGCC 59.735 38.462 0.00 0.00 29.85 4.52
4188 4355 4.255510 ACTGATTAATGATGGGTTGCCT 57.744 40.909 0.00 0.00 0.00 4.75
4189 4356 4.613437 ACTGATTAATGATGGGTTGCCTT 58.387 39.130 0.00 0.00 0.00 4.35
4190 4357 4.646492 ACTGATTAATGATGGGTTGCCTTC 59.354 41.667 0.00 0.00 0.00 3.46
4191 4358 4.608269 TGATTAATGATGGGTTGCCTTCA 58.392 39.130 0.00 0.00 0.00 3.02
4192 4359 5.210430 TGATTAATGATGGGTTGCCTTCAT 58.790 37.500 0.00 0.00 31.39 2.57
4193 4360 5.302568 TGATTAATGATGGGTTGCCTTCATC 59.697 40.000 0.00 0.00 38.13 2.92
4194 4361 3.393426 AATGATGGGTTGCCTTCATCT 57.607 42.857 0.00 0.00 38.38 2.90
4195 4362 2.905415 TGATGGGTTGCCTTCATCTT 57.095 45.000 0.00 0.00 38.38 2.40
4196 4363 3.173953 TGATGGGTTGCCTTCATCTTT 57.826 42.857 0.00 0.00 38.38 2.52
4197 4364 3.091545 TGATGGGTTGCCTTCATCTTTC 58.908 45.455 0.00 0.00 38.38 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.421485 GCATGAGCGTTTGTCTCGG 59.579 57.895 0.00 0.00 33.41 4.63
61 72 2.040544 GTCGGTGCATGGTCTTGGG 61.041 63.158 0.00 0.00 0.00 4.12
65 76 1.188219 AGAGTGTCGGTGCATGGTCT 61.188 55.000 0.00 0.00 0.00 3.85
82 93 2.166829 GCTCAGTCACCAGAGAAGAGA 58.833 52.381 0.00 0.00 33.74 3.10
108 119 1.330779 CGATCTTCGATAGCCGTGCG 61.331 60.000 0.00 0.00 43.74 5.34
114 125 0.661780 ACGCAGCGATCTTCGATAGC 60.662 55.000 24.65 1.41 43.74 2.97
119 130 1.148157 ATCCAACGCAGCGATCTTCG 61.148 55.000 24.65 0.00 43.89 3.79
588 599 6.071391 TCCAACTTTTAGGGCATCTTTGATTC 60.071 38.462 0.00 0.00 0.00 2.52
632 643 4.579869 TGCATAAACTCAAAGGAGGAGAC 58.420 43.478 0.00 0.00 45.81 3.36
636 647 5.452078 TGTTTGCATAAACTCAAAGGAGG 57.548 39.130 3.11 0.00 45.81 4.30
650 662 4.333913 TGCCAAGTTGTATTGTTTGCAT 57.666 36.364 1.45 0.00 0.00 3.96
658 670 4.858850 TCCATCTCATGCCAAGTTGTATT 58.141 39.130 1.45 0.00 0.00 1.89
951 964 0.670546 GAGCGAGCTGGTGTGCTTAA 60.671 55.000 0.84 0.00 44.17 1.85
1282 1295 7.061752 AGTAACAAACGACATTAATCAGAGC 57.938 36.000 0.00 0.00 0.00 4.09
1380 1394 4.088634 AGCCTTTGCATACAAATCCAGAA 58.911 39.130 0.00 0.00 44.54 3.02
1419 1435 5.067674 CAGCAAGCTACTCTCACTAATCTCT 59.932 44.000 0.00 0.00 0.00 3.10
1446 1462 5.361857 CCTACTTTCCATTCTTGGCATCAAT 59.638 40.000 0.00 0.00 43.29 2.57
1502 1518 1.939934 CTGTGCGACAAAGTTCTCCAA 59.060 47.619 0.00 0.00 0.00 3.53
1507 1523 1.205657 TCGTCTGTGCGACAAAGTTC 58.794 50.000 0.00 0.00 42.98 3.01
1510 1526 1.526887 ACATTCGTCTGTGCGACAAAG 59.473 47.619 0.00 0.00 42.98 2.77
1585 1603 4.787551 TGACCCAACTTAGTGAACAATGT 58.212 39.130 0.00 0.00 0.00 2.71
1876 1908 1.508256 ACTATGGGGCCTCACTTACC 58.492 55.000 7.99 0.00 0.00 2.85
1891 1923 6.190346 TGGGTTTGTTACACCAACTACTAT 57.810 37.500 0.82 0.00 38.05 2.12
1920 1955 4.780815 TCAGATTTAAGGCATGGTACCTG 58.219 43.478 14.36 10.00 37.67 4.00
1935 1970 3.330701 TGCCTTTCCACCTACTCAGATTT 59.669 43.478 0.00 0.00 0.00 2.17
1951 1986 1.121407 GGAAAGGGGTTGCTGCCTTT 61.121 55.000 0.00 0.00 35.55 3.11
1975 2010 4.816392 TCACAGACTAACGCACAACATAT 58.184 39.130 0.00 0.00 0.00 1.78
1995 2030 4.216042 ACACGACAAAATCTGCATGATTCA 59.784 37.500 0.00 0.00 43.99 2.57
2006 2041 3.469899 TGCTATGCACACGACAAAATC 57.530 42.857 0.00 0.00 31.71 2.17
2057 2092 5.163301 GCATTTTGGGATCACTAGGAGTCTA 60.163 44.000 0.00 0.00 0.00 2.59
2126 2163 5.687166 AATGTACTCCGGTCAAATTCCTA 57.313 39.130 0.00 0.00 0.00 2.94
2127 2164 4.569719 AATGTACTCCGGTCAAATTCCT 57.430 40.909 0.00 0.00 0.00 3.36
2189 2226 4.932200 ACATCAACGAAAAACTGGCAAAAA 59.068 33.333 0.00 0.00 0.00 1.94
2190 2227 4.499183 ACATCAACGAAAAACTGGCAAAA 58.501 34.783 0.00 0.00 0.00 2.44
2191 2228 4.116747 ACATCAACGAAAAACTGGCAAA 57.883 36.364 0.00 0.00 0.00 3.68
2241 2281 6.381801 ACGAATATTTTGCTCCAGAACTTTG 58.618 36.000 0.00 0.00 0.00 2.77
2358 2510 4.432712 TCGGCCCGTTTTAGTAATTAGTC 58.567 43.478 1.63 0.00 0.00 2.59
2475 2627 1.739562 CCTGACAAGAGTGCGAGCC 60.740 63.158 0.00 0.00 0.00 4.70
2672 2826 1.131883 CGGCCTCTGCTCAAAGAAATG 59.868 52.381 0.00 0.00 37.74 2.32
2754 2908 1.671379 GTTGTTGCGGAGGGAGGTC 60.671 63.158 0.00 0.00 0.00 3.85
2818 2972 5.869649 AAAATGAGTGGGTTTGTTAAGCT 57.130 34.783 0.00 0.00 32.40 3.74
3068 3226 1.337447 CCCTTGACGTAGCCGAAGAAA 60.337 52.381 0.00 0.00 37.88 2.52
3256 3414 3.133003 CACAGGTAGGTAGCTTGCTGTAT 59.867 47.826 0.00 0.00 30.45 2.29
3386 3544 6.642950 CCAGTACACAAACAGAAAACAAAACA 59.357 34.615 0.00 0.00 0.00 2.83
3428 3586 7.011109 CACCCAAATACACTACTAACATACTGC 59.989 40.741 0.00 0.00 0.00 4.40
3519 3681 2.240160 AGATTACCACCGCACCCAAATA 59.760 45.455 0.00 0.00 0.00 1.40
3520 3682 1.005450 AGATTACCACCGCACCCAAAT 59.995 47.619 0.00 0.00 0.00 2.32
3523 3685 1.195442 TCAGATTACCACCGCACCCA 61.195 55.000 0.00 0.00 0.00 4.51
3524 3686 0.180406 ATCAGATTACCACCGCACCC 59.820 55.000 0.00 0.00 0.00 4.61
3605 3767 5.520288 TCAGAAACGAAACTCACTTCAGAAG 59.480 40.000 8.77 8.77 0.00 2.85
3671 3834 5.104859 TGAGAGGACGTCACTATCTCTTACT 60.105 44.000 25.97 10.25 37.79 2.24
3672 3835 5.006941 GTGAGAGGACGTCACTATCTCTTAC 59.993 48.000 25.97 23.10 41.05 2.34
3673 3836 5.117584 GTGAGAGGACGTCACTATCTCTTA 58.882 45.833 25.97 18.42 41.05 2.10
3778 3944 5.616866 CGATATTTCTTGTGGTTGCTTTCGT 60.617 40.000 0.00 0.00 0.00 3.85
3809 3975 7.595604 GGTCTTCCGGTTTTATATTGTTTTCA 58.404 34.615 0.00 0.00 0.00 2.69
3835 4001 6.153000 TGACTTGATAAGAACTACCTCACTCC 59.847 42.308 0.00 0.00 0.00 3.85
3852 4018 9.630098 CTGTTTTTATGTTGCTATTGACTTGAT 57.370 29.630 0.00 0.00 0.00 2.57
3892 4058 2.543848 CACTGCGCACTGTCTTCTTTTA 59.456 45.455 5.66 0.00 0.00 1.52
3897 4063 1.497991 TTACACTGCGCACTGTCTTC 58.502 50.000 23.23 0.00 0.00 2.87
3900 4066 2.748461 TTTTTACACTGCGCACTGTC 57.252 45.000 23.23 0.00 0.00 3.51
3953 4120 8.076178 GTGTCAGCTATTTTCACAAGTTTATGT 58.924 33.333 0.00 0.00 0.00 2.29
3972 4139 3.520569 ACCAATTGTTTGTTGTGTCAGC 58.479 40.909 4.43 0.00 0.00 4.26
4025 4192 1.139520 CCATAACTGCAAAGGCCGC 59.860 57.895 0.00 0.00 40.13 6.53
4026 4193 1.392589 ATCCATAACTGCAAAGGCCG 58.607 50.000 0.00 0.00 40.13 6.13
4027 4194 2.159057 CCAATCCATAACTGCAAAGGCC 60.159 50.000 0.00 0.00 40.13 5.19
4028 4195 2.497273 ACCAATCCATAACTGCAAAGGC 59.503 45.455 0.00 0.00 41.68 4.35
4029 4196 3.763360 TCACCAATCCATAACTGCAAAGG 59.237 43.478 0.00 0.00 0.00 3.11
4030 4197 5.587388 ATCACCAATCCATAACTGCAAAG 57.413 39.130 0.00 0.00 0.00 2.77
4031 4198 5.479724 TGAATCACCAATCCATAACTGCAAA 59.520 36.000 0.00 0.00 0.00 3.68
4032 4199 5.015515 TGAATCACCAATCCATAACTGCAA 58.984 37.500 0.00 0.00 0.00 4.08
4033 4200 4.598022 TGAATCACCAATCCATAACTGCA 58.402 39.130 0.00 0.00 0.00 4.41
4034 4201 4.037208 CCTGAATCACCAATCCATAACTGC 59.963 45.833 0.00 0.00 0.00 4.40
4035 4202 4.581824 CCCTGAATCACCAATCCATAACTG 59.418 45.833 0.00 0.00 0.00 3.16
4036 4203 4.386761 CCCCTGAATCACCAATCCATAACT 60.387 45.833 0.00 0.00 0.00 2.24
4037 4204 3.891366 CCCCTGAATCACCAATCCATAAC 59.109 47.826 0.00 0.00 0.00 1.89
4038 4205 3.531397 ACCCCTGAATCACCAATCCATAA 59.469 43.478 0.00 0.00 0.00 1.90
4039 4206 3.130450 ACCCCTGAATCACCAATCCATA 58.870 45.455 0.00 0.00 0.00 2.74
4040 4207 1.932338 ACCCCTGAATCACCAATCCAT 59.068 47.619 0.00 0.00 0.00 3.41
4041 4208 1.381867 ACCCCTGAATCACCAATCCA 58.618 50.000 0.00 0.00 0.00 3.41
4042 4209 2.024941 AGAACCCCTGAATCACCAATCC 60.025 50.000 0.00 0.00 0.00 3.01
4043 4210 3.372440 AGAACCCCTGAATCACCAATC 57.628 47.619 0.00 0.00 0.00 2.67
4044 4211 5.203528 CAATAGAACCCCTGAATCACCAAT 58.796 41.667 0.00 0.00 0.00 3.16
4045 4212 4.044065 ACAATAGAACCCCTGAATCACCAA 59.956 41.667 0.00 0.00 0.00 3.67
4046 4213 3.591527 ACAATAGAACCCCTGAATCACCA 59.408 43.478 0.00 0.00 0.00 4.17
4047 4214 4.236527 ACAATAGAACCCCTGAATCACC 57.763 45.455 0.00 0.00 0.00 4.02
4048 4215 7.610305 TCTTAAACAATAGAACCCCTGAATCAC 59.390 37.037 0.00 0.00 0.00 3.06
4049 4216 7.695055 TCTTAAACAATAGAACCCCTGAATCA 58.305 34.615 0.00 0.00 0.00 2.57
4050 4217 8.753497 ATCTTAAACAATAGAACCCCTGAATC 57.247 34.615 0.00 0.00 0.00 2.52
4061 4228 9.661563 TCGGCTTCTTTAATCTTAAACAATAGA 57.338 29.630 0.00 0.00 0.00 1.98
4076 4243 9.273016 CCAGAAGAATTAATATCGGCTTCTTTA 57.727 33.333 0.00 0.00 39.81 1.85
4077 4244 7.993183 TCCAGAAGAATTAATATCGGCTTCTTT 59.007 33.333 0.00 0.00 39.81 2.52
4078 4245 7.509546 TCCAGAAGAATTAATATCGGCTTCTT 58.490 34.615 0.00 6.32 39.81 2.52
4079 4246 7.067496 TCCAGAAGAATTAATATCGGCTTCT 57.933 36.000 0.00 0.00 41.79 2.85
4080 4247 7.442666 AGTTCCAGAAGAATTAATATCGGCTTC 59.557 37.037 0.00 0.00 36.69 3.86
4081 4248 7.283329 AGTTCCAGAAGAATTAATATCGGCTT 58.717 34.615 0.00 0.00 36.69 4.35
4082 4249 6.831976 AGTTCCAGAAGAATTAATATCGGCT 58.168 36.000 0.00 0.00 36.69 5.52
4083 4250 7.442666 AGAAGTTCCAGAAGAATTAATATCGGC 59.557 37.037 0.00 0.00 36.69 5.54
4084 4251 8.894768 AGAAGTTCCAGAAGAATTAATATCGG 57.105 34.615 0.00 0.00 36.69 4.18
4095 4262 9.712305 CTGTTCTTAAATAGAAGTTCCAGAAGA 57.288 33.333 0.00 0.00 43.39 2.87
4096 4263 9.712305 TCTGTTCTTAAATAGAAGTTCCAGAAG 57.288 33.333 0.00 0.00 43.39 2.85
4103 4270 9.959721 TGGCTAATCTGTTCTTAAATAGAAGTT 57.040 29.630 0.00 0.00 43.39 2.66
4114 4281 9.282569 GAAGATGAATATGGCTAATCTGTTCTT 57.717 33.333 0.00 0.00 0.00 2.52
4115 4282 8.658619 AGAAGATGAATATGGCTAATCTGTTCT 58.341 33.333 0.00 0.00 0.00 3.01
4116 4283 8.845413 AGAAGATGAATATGGCTAATCTGTTC 57.155 34.615 0.00 0.00 0.00 3.18
4117 4284 7.601886 CGAGAAGATGAATATGGCTAATCTGTT 59.398 37.037 0.00 0.00 0.00 3.16
4118 4285 7.039434 TCGAGAAGATGAATATGGCTAATCTGT 60.039 37.037 0.00 0.00 0.00 3.41
4119 4286 7.318893 TCGAGAAGATGAATATGGCTAATCTG 58.681 38.462 0.00 0.00 0.00 2.90
4120 4287 7.178274 ACTCGAGAAGATGAATATGGCTAATCT 59.822 37.037 21.68 0.00 0.00 2.40
4121 4288 7.319646 ACTCGAGAAGATGAATATGGCTAATC 58.680 38.462 21.68 0.00 0.00 1.75
4122 4289 7.178274 AGACTCGAGAAGATGAATATGGCTAAT 59.822 37.037 21.68 0.00 0.00 1.73
4123 4290 6.491745 AGACTCGAGAAGATGAATATGGCTAA 59.508 38.462 21.68 0.00 0.00 3.09
4124 4291 6.007076 AGACTCGAGAAGATGAATATGGCTA 58.993 40.000 21.68 0.00 0.00 3.93
4125 4292 4.832266 AGACTCGAGAAGATGAATATGGCT 59.168 41.667 21.68 0.00 0.00 4.75
4126 4293 5.048083 AGAGACTCGAGAAGATGAATATGGC 60.048 44.000 21.68 0.00 0.00 4.40
4127 4294 6.573664 AGAGACTCGAGAAGATGAATATGG 57.426 41.667 21.68 0.00 0.00 2.74
4128 4295 7.390440 ACCTAGAGACTCGAGAAGATGAATATG 59.610 40.741 21.68 0.00 0.00 1.78
4129 4296 7.458397 ACCTAGAGACTCGAGAAGATGAATAT 58.542 38.462 21.68 0.00 0.00 1.28
4130 4297 6.833041 ACCTAGAGACTCGAGAAGATGAATA 58.167 40.000 21.68 0.19 0.00 1.75
4131 4298 5.690865 ACCTAGAGACTCGAGAAGATGAAT 58.309 41.667 21.68 0.00 0.00 2.57
4132 4299 5.105567 ACCTAGAGACTCGAGAAGATGAA 57.894 43.478 21.68 0.00 0.00 2.57
4133 4300 4.764050 ACCTAGAGACTCGAGAAGATGA 57.236 45.455 21.68 0.00 0.00 2.92
4134 4301 5.123227 AGAACCTAGAGACTCGAGAAGATG 58.877 45.833 21.68 4.40 0.00 2.90
4135 4302 5.367945 AGAACCTAGAGACTCGAGAAGAT 57.632 43.478 21.68 4.83 0.00 2.40
4136 4303 4.829872 AGAACCTAGAGACTCGAGAAGA 57.170 45.455 21.68 0.00 0.00 2.87
4137 4304 5.890424 AAAGAACCTAGAGACTCGAGAAG 57.110 43.478 21.68 7.84 0.00 2.85
4138 4305 6.005198 AGAAAAGAACCTAGAGACTCGAGAA 58.995 40.000 21.68 0.00 0.00 2.87
4139 4306 5.413213 CAGAAAAGAACCTAGAGACTCGAGA 59.587 44.000 21.68 0.00 0.00 4.04
4140 4307 5.413213 TCAGAAAAGAACCTAGAGACTCGAG 59.587 44.000 11.84 11.84 0.00 4.04
4141 4308 5.314529 TCAGAAAAGAACCTAGAGACTCGA 58.685 41.667 0.00 0.00 0.00 4.04
4142 4309 5.630661 TCAGAAAAGAACCTAGAGACTCG 57.369 43.478 0.00 0.00 0.00 4.18
4143 4310 8.745590 AGTAATCAGAAAAGAACCTAGAGACTC 58.254 37.037 0.00 0.00 0.00 3.36
4144 4311 8.527810 CAGTAATCAGAAAAGAACCTAGAGACT 58.472 37.037 0.00 0.00 0.00 3.24
4145 4312 8.524487 TCAGTAATCAGAAAAGAACCTAGAGAC 58.476 37.037 0.00 0.00 0.00 3.36
4146 4313 8.651589 TCAGTAATCAGAAAAGAACCTAGAGA 57.348 34.615 0.00 0.00 0.00 3.10
4147 4314 9.883142 AATCAGTAATCAGAAAAGAACCTAGAG 57.117 33.333 0.00 0.00 0.00 2.43
4157 4324 9.699410 ACCCATCATTAATCAGTAATCAGAAAA 57.301 29.630 0.00 0.00 29.38 2.29
4158 4325 9.699410 AACCCATCATTAATCAGTAATCAGAAA 57.301 29.630 0.00 0.00 29.38 2.52
4159 4326 9.123902 CAACCCATCATTAATCAGTAATCAGAA 57.876 33.333 0.00 0.00 29.38 3.02
4160 4327 7.229306 GCAACCCATCATTAATCAGTAATCAGA 59.771 37.037 0.00 0.00 29.38 3.27
4161 4328 7.365741 GCAACCCATCATTAATCAGTAATCAG 58.634 38.462 0.00 0.00 29.38 2.90
4162 4329 6.265196 GGCAACCCATCATTAATCAGTAATCA 59.735 38.462 0.00 0.00 29.38 2.57
4163 4330 6.491403 AGGCAACCCATCATTAATCAGTAATC 59.509 38.462 0.00 0.00 29.60 1.75
4164 4331 6.376248 AGGCAACCCATCATTAATCAGTAAT 58.624 36.000 0.00 0.00 31.63 1.89
4165 4332 5.765510 AGGCAACCCATCATTAATCAGTAA 58.234 37.500 0.00 0.00 37.17 2.24
4166 4333 5.387113 AGGCAACCCATCATTAATCAGTA 57.613 39.130 0.00 0.00 37.17 2.74
4167 4334 4.255510 AGGCAACCCATCATTAATCAGT 57.744 40.909 0.00 0.00 37.17 3.41
4168 4335 4.646040 TGAAGGCAACCCATCATTAATCAG 59.354 41.667 0.00 0.00 34.12 2.90
4169 4336 4.608269 TGAAGGCAACCCATCATTAATCA 58.392 39.130 0.00 0.00 34.12 2.57
4170 4337 5.537674 AGATGAAGGCAACCCATCATTAATC 59.462 40.000 0.00 0.00 46.53 1.75
4171 4338 5.461327 AGATGAAGGCAACCCATCATTAAT 58.539 37.500 0.00 0.00 46.53 1.40
4172 4339 4.870636 AGATGAAGGCAACCCATCATTAA 58.129 39.130 0.00 0.00 46.53 1.40
4173 4340 4.524802 AGATGAAGGCAACCCATCATTA 57.475 40.909 0.00 0.00 46.53 1.90
4174 4341 3.393426 AGATGAAGGCAACCCATCATT 57.607 42.857 0.00 0.00 46.53 2.57
4176 4343 2.905415 AAGATGAAGGCAACCCATCA 57.095 45.000 0.00 0.00 44.78 3.07
4177 4344 3.790152 GAAAGATGAAGGCAACCCATC 57.210 47.619 0.00 0.00 43.51 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.