Multiple sequence alignment - TraesCS5D01G205700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G205700 chr5D 100.000 2870 0 0 1 2870 312056901 312059770 0.000000e+00 5301.0
1 TraesCS5D01G205700 chr5D 86.682 443 38 2 1440 1882 311883501 311883922 3.350000e-129 472.0
2 TraesCS5D01G205700 chr5D 86.824 425 24 21 867 1290 311806774 311807167 2.030000e-121 446.0
3 TraesCS5D01G205700 chr5D 94.083 169 10 0 1122 1290 311814064 311814232 1.020000e-64 257.0
4 TraesCS5D01G205700 chr5D 93.960 149 9 0 17 165 311804415 311804563 2.880000e-55 226.0
5 TraesCS5D01G205700 chr5D 90.511 137 10 1 769 902 311732288 311732424 8.170000e-41 178.0
6 TraesCS5D01G205700 chr5D 83.636 165 15 8 317 470 365124336 365124173 8.290000e-31 145.0
7 TraesCS5D01G205700 chr5D 82.812 64 10 1 430 492 339983133 339983196 3.990000e-04 56.5
8 TraesCS5D01G205700 chr5A 92.123 1460 50 23 689 2125 405013582 405014999 0.000000e+00 1999.0
9 TraesCS5D01G205700 chr5A 87.710 594 33 15 2294 2870 405015434 405016004 0.000000e+00 656.0
10 TraesCS5D01G205700 chr5A 87.302 126 10 2 1 120 405012440 405012565 3.860000e-29 139.0
11 TraesCS5D01G205700 chr5A 84.091 132 14 4 162 290 689655793 689655920 1.400000e-23 121.0
12 TraesCS5D01G205700 chr5A 83.459 133 15 3 161 290 621864240 621864112 1.810000e-22 117.0
13 TraesCS5D01G205700 chr5B 90.922 1454 67 34 657 2087 358375495 358376906 0.000000e+00 1893.0
14 TraesCS5D01G205700 chr5B 92.439 939 36 10 956 1885 357998748 357999660 0.000000e+00 1308.0
15 TraesCS5D01G205700 chr5B 90.548 529 33 12 2343 2870 358378432 358378944 0.000000e+00 684.0
16 TraesCS5D01G205700 chr5B 82.371 329 24 18 650 960 357993168 357993480 3.670000e-64 255.0
17 TraesCS5D01G205700 chr5B 83.846 130 14 3 164 290 166322204 166322329 1.810000e-22 117.0
18 TraesCS5D01G205700 chr5B 85.849 106 15 0 11 116 358375389 358375494 2.340000e-21 113.0
19 TraesCS5D01G205700 chr6D 83.412 211 19 9 293 491 454889330 454889536 6.320000e-42 182.0
20 TraesCS5D01G205700 chr6D 82.938 211 20 9 293 491 454922885 454923091 2.940000e-40 176.0
21 TraesCS5D01G205700 chr7D 82.673 202 26 7 293 489 176882928 176883125 1.370000e-38 171.0
22 TraesCS5D01G205700 chr7D 86.207 87 10 2 407 491 42795278 42795192 3.040000e-15 93.5
23 TraesCS5D01G205700 chr2A 82.381 210 22 8 293 491 4999837 4999632 4.920000e-38 169.0
24 TraesCS5D01G205700 chr2A 77.186 263 32 15 164 404 209242810 209243066 8.350000e-26 128.0
25 TraesCS5D01G205700 chr2A 74.598 311 55 13 1002 1309 38878970 38879259 6.500000e-22 115.0
26 TraesCS5D01G205700 chr2A 80.916 131 22 1 1001 1128 38755041 38755171 1.820000e-17 100.0
27 TraesCS5D01G205700 chr7A 81.132 212 23 10 293 491 57132340 57132547 1.380000e-33 154.0
28 TraesCS5D01G205700 chr7A 84.270 89 13 1 404 491 42435061 42434973 5.090000e-13 86.1
29 TraesCS5D01G205700 chr3B 81.188 202 25 10 304 492 449838224 449838425 1.780000e-32 150.0
30 TraesCS5D01G205700 chr1D 80.583 206 25 10 307 497 14667559 14667354 8.290000e-31 145.0
31 TraesCS5D01G205700 chr2B 75.817 306 53 10 1001 1303 58826207 58826494 4.990000e-28 135.0
32 TraesCS5D01G205700 chr2B 87.778 90 11 0 1220 1309 58773601 58773690 3.910000e-19 106.0
33 TraesCS5D01G205700 chr2B 100.000 28 0 0 463 490 963537 963510 5.000000e-03 52.8
34 TraesCS5D01G205700 chr4A 85.385 130 12 3 164 290 5255127 5255002 8.350000e-26 128.0
35 TraesCS5D01G205700 chr4A 84.375 128 13 4 165 290 712834225 712834103 5.020000e-23 119.0
36 TraesCS5D01G205700 chr3A 85.156 128 14 2 164 290 608684239 608684362 3.000000e-25 126.0
37 TraesCS5D01G205700 chr3A 84.496 129 13 3 164 289 609957960 609958084 1.400000e-23 121.0
38 TraesCS5D01G205700 chr7B 84.496 129 14 2 164 290 724809731 724809607 3.880000e-24 122.0
39 TraesCS5D01G205700 chr7B 83.333 132 15 3 293 423 624474847 624474972 6.500000e-22 115.0
40 TraesCS5D01G205700 chr2D 82.609 138 21 1 1001 1135 35564378 35564515 5.020000e-23 119.0
41 TraesCS5D01G205700 chr2D 81.379 145 24 3 1001 1142 35677851 35677995 6.500000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G205700 chr5D 312056901 312059770 2869 False 5301.000000 5301 100.000000 1 2870 1 chr5D.!!$F4 2869
1 TraesCS5D01G205700 chr5D 311804415 311807167 2752 False 336.000000 446 90.392000 17 1290 2 chr5D.!!$F6 1273
2 TraesCS5D01G205700 chr5A 405012440 405016004 3564 False 931.333333 1999 89.045000 1 2870 3 chr5A.!!$F2 2869
3 TraesCS5D01G205700 chr5B 357998748 357999660 912 False 1308.000000 1308 92.439000 956 1885 1 chr5B.!!$F3 929
4 TraesCS5D01G205700 chr5B 358375389 358378944 3555 False 896.666667 1893 89.106333 11 2870 3 chr5B.!!$F4 2859

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
281 304 0.036732 AAAGACTGAATGAGCCGGCA 59.963 50.0 31.54 9.64 0.0 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2150 4879 0.108186 TCGAGATTGCGAGGTTGCAT 60.108 50.0 0.0 0.0 45.78 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 97 0.938637 TCGTTTGCATGCCGCTTTTG 60.939 50.000 16.68 0.00 43.06 2.44
130 137 7.130269 GGCGAAAATGGAATAGTAACATACAC 58.870 38.462 0.00 0.00 0.00 2.90
163 186 8.950007 TTATTTCCAGTTCTTTTTATGGAGGT 57.050 30.769 0.00 0.00 42.54 3.85
164 187 7.855784 ATTTCCAGTTCTTTTTATGGAGGTT 57.144 32.000 0.00 0.00 42.54 3.50
165 188 7.669089 TTTCCAGTTCTTTTTATGGAGGTTT 57.331 32.000 0.00 0.00 42.54 3.27
166 189 7.669089 TTCCAGTTCTTTTTATGGAGGTTTT 57.331 32.000 0.00 0.00 42.54 2.43
167 190 7.669089 TCCAGTTCTTTTTATGGAGGTTTTT 57.331 32.000 0.00 0.00 36.92 1.94
190 213 5.682943 TTTAACATCAGTACACACAAGCC 57.317 39.130 0.00 0.00 0.00 4.35
191 214 2.185004 ACATCAGTACACACAAGCCC 57.815 50.000 0.00 0.00 0.00 5.19
192 215 1.699634 ACATCAGTACACACAAGCCCT 59.300 47.619 0.00 0.00 0.00 5.19
193 216 2.289694 ACATCAGTACACACAAGCCCTC 60.290 50.000 0.00 0.00 0.00 4.30
194 217 1.419381 TCAGTACACACAAGCCCTCA 58.581 50.000 0.00 0.00 0.00 3.86
195 218 1.977854 TCAGTACACACAAGCCCTCAT 59.022 47.619 0.00 0.00 0.00 2.90
196 219 3.169908 TCAGTACACACAAGCCCTCATA 58.830 45.455 0.00 0.00 0.00 2.15
197 220 3.774766 TCAGTACACACAAGCCCTCATAT 59.225 43.478 0.00 0.00 0.00 1.78
198 221 4.959839 TCAGTACACACAAGCCCTCATATA 59.040 41.667 0.00 0.00 0.00 0.86
199 222 5.602561 TCAGTACACACAAGCCCTCATATAT 59.397 40.000 0.00 0.00 0.00 0.86
200 223 6.780522 TCAGTACACACAAGCCCTCATATATA 59.219 38.462 0.00 0.00 0.00 0.86
201 224 6.868864 CAGTACACACAAGCCCTCATATATAC 59.131 42.308 0.00 0.00 0.00 1.47
202 225 4.883083 ACACACAAGCCCTCATATATACG 58.117 43.478 0.00 0.00 0.00 3.06
203 226 4.344102 ACACACAAGCCCTCATATATACGT 59.656 41.667 0.00 0.00 0.00 3.57
204 227 4.686091 CACACAAGCCCTCATATATACGTG 59.314 45.833 0.00 0.00 0.00 4.49
205 228 4.344102 ACACAAGCCCTCATATATACGTGT 59.656 41.667 0.00 0.00 0.00 4.49
206 229 5.537295 ACACAAGCCCTCATATATACGTGTA 59.463 40.000 0.00 0.00 32.49 2.90
207 230 6.210784 ACACAAGCCCTCATATATACGTGTAT 59.789 38.462 9.87 9.87 32.49 2.29
208 231 7.395206 ACACAAGCCCTCATATATACGTGTATA 59.605 37.037 13.54 13.54 32.49 1.47
209 232 7.701078 CACAAGCCCTCATATATACGTGTATAC 59.299 40.741 13.46 0.00 31.52 1.47
210 233 7.395206 ACAAGCCCTCATATATACGTGTATACA 59.605 37.037 13.46 0.08 31.52 2.29
211 234 8.414003 CAAGCCCTCATATATACGTGTATACAT 58.586 37.037 13.46 0.00 31.52 2.29
212 235 8.534954 AGCCCTCATATATACGTGTATACATT 57.465 34.615 13.46 2.06 31.52 2.71
213 236 8.630917 AGCCCTCATATATACGTGTATACATTC 58.369 37.037 13.46 0.00 31.52 2.67
214 237 8.410912 GCCCTCATATATACGTGTATACATTCA 58.589 37.037 13.46 0.00 31.52 2.57
232 255 3.326836 TCATCCTTATGAACGCACACA 57.673 42.857 0.00 0.00 39.20 3.72
233 256 3.000041 TCATCCTTATGAACGCACACAC 59.000 45.455 0.00 0.00 39.20 3.82
234 257 1.424403 TCCTTATGAACGCACACACG 58.576 50.000 0.00 0.00 39.50 4.49
235 258 0.179225 CCTTATGAACGCACACACGC 60.179 55.000 0.00 0.00 36.19 5.34
236 259 0.510790 CTTATGAACGCACACACGCA 59.489 50.000 0.00 0.00 36.19 5.24
237 260 0.233590 TTATGAACGCACACACGCAC 59.766 50.000 0.00 0.00 36.19 5.34
238 261 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
239 262 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
240 263 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
243 266 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
244 267 1.671054 GCACACACGCACACCCTAT 60.671 57.895 0.00 0.00 0.00 2.57
245 268 1.635663 GCACACACGCACACCCTATC 61.636 60.000 0.00 0.00 0.00 2.08
246 269 0.037326 CACACACGCACACCCTATCT 60.037 55.000 0.00 0.00 0.00 1.98
247 270 1.203758 CACACACGCACACCCTATCTA 59.796 52.381 0.00 0.00 0.00 1.98
248 271 2.108168 ACACACGCACACCCTATCTAT 58.892 47.619 0.00 0.00 0.00 1.98
249 272 3.067601 CACACACGCACACCCTATCTATA 59.932 47.826 0.00 0.00 0.00 1.31
250 273 3.895656 ACACACGCACACCCTATCTATAT 59.104 43.478 0.00 0.00 0.00 0.86
251 274 5.048294 CACACACGCACACCCTATCTATATA 60.048 44.000 0.00 0.00 0.00 0.86
252 275 5.715279 ACACACGCACACCCTATCTATATAT 59.285 40.000 0.00 0.00 0.00 0.86
253 276 6.888088 ACACACGCACACCCTATCTATATATA 59.112 38.462 0.00 0.00 0.00 0.86
254 277 7.148120 ACACACGCACACCCTATCTATATATAC 60.148 40.741 0.00 0.00 0.00 1.47
255 278 6.888088 ACACGCACACCCTATCTATATATACA 59.112 38.462 0.00 0.00 0.00 2.29
256 279 7.560262 ACACGCACACCCTATCTATATATACAT 59.440 37.037 0.00 0.00 0.00 2.29
257 280 8.076781 CACGCACACCCTATCTATATATACATC 58.923 40.741 0.00 0.00 0.00 3.06
258 281 7.999545 ACGCACACCCTATCTATATATACATCT 59.000 37.037 0.00 0.00 0.00 2.90
259 282 8.508062 CGCACACCCTATCTATATATACATCTC 58.492 40.741 0.00 0.00 0.00 2.75
260 283 8.798402 GCACACCCTATCTATATATACATCTCC 58.202 40.741 0.00 0.00 0.00 3.71
261 284 9.004717 CACACCCTATCTATATATACATCTCCG 57.995 40.741 0.00 0.00 0.00 4.63
262 285 8.946248 ACACCCTATCTATATATACATCTCCGA 58.054 37.037 0.00 0.00 0.00 4.55
263 286 9.794719 CACCCTATCTATATATACATCTCCGAA 57.205 37.037 0.00 0.00 0.00 4.30
274 297 4.808414 ACATCTCCGAAAGACTGAATGA 57.192 40.909 0.00 0.00 36.65 2.57
275 298 4.753233 ACATCTCCGAAAGACTGAATGAG 58.247 43.478 0.00 0.00 36.65 2.90
276 299 3.238108 TCTCCGAAAGACTGAATGAGC 57.762 47.619 0.00 0.00 0.00 4.26
277 300 2.093973 TCTCCGAAAGACTGAATGAGCC 60.094 50.000 0.00 0.00 0.00 4.70
278 301 1.002366 CCGAAAGACTGAATGAGCCG 58.998 55.000 0.00 0.00 0.00 5.52
279 302 1.002366 CGAAAGACTGAATGAGCCGG 58.998 55.000 0.00 0.00 0.00 6.13
280 303 0.729690 GAAAGACTGAATGAGCCGGC 59.270 55.000 21.89 21.89 0.00 6.13
281 304 0.036732 AAAGACTGAATGAGCCGGCA 59.963 50.000 31.54 9.64 0.00 5.69
282 305 0.254178 AAGACTGAATGAGCCGGCAT 59.746 50.000 31.54 12.05 0.00 4.40
283 306 1.123077 AGACTGAATGAGCCGGCATA 58.877 50.000 31.54 17.84 0.00 3.14
284 307 1.696336 AGACTGAATGAGCCGGCATAT 59.304 47.619 31.54 19.46 0.00 1.78
285 308 2.072298 GACTGAATGAGCCGGCATATC 58.928 52.381 31.54 18.63 0.00 1.63
286 309 1.417517 ACTGAATGAGCCGGCATATCA 59.582 47.619 31.54 24.11 0.00 2.15
287 310 2.039480 ACTGAATGAGCCGGCATATCAT 59.961 45.455 31.54 25.29 35.21 2.45
288 311 2.676839 CTGAATGAGCCGGCATATCATC 59.323 50.000 31.54 20.26 32.59 2.92
289 312 2.303890 TGAATGAGCCGGCATATCATCT 59.696 45.455 31.54 17.85 32.59 2.90
290 313 2.687700 ATGAGCCGGCATATCATCTC 57.312 50.000 31.54 15.36 0.00 2.75
291 314 1.637338 TGAGCCGGCATATCATCTCT 58.363 50.000 31.54 2.38 0.00 3.10
292 315 1.973515 TGAGCCGGCATATCATCTCTT 59.026 47.619 31.54 1.71 0.00 2.85
293 316 2.028658 TGAGCCGGCATATCATCTCTTC 60.029 50.000 31.54 13.19 0.00 2.87
294 317 1.277557 AGCCGGCATATCATCTCTTCC 59.722 52.381 31.54 0.00 0.00 3.46
295 318 2.001812 CCGGCATATCATCTCTTCCG 57.998 55.000 0.00 0.00 35.60 4.30
296 319 1.546029 CCGGCATATCATCTCTTCCGA 59.454 52.381 0.00 0.00 37.79 4.55
297 320 2.416566 CCGGCATATCATCTCTTCCGAG 60.417 54.545 0.00 0.00 37.79 4.63
310 333 2.425312 TCTTCCGAGAGACTGAATGAGC 59.575 50.000 0.00 0.00 0.00 4.26
311 334 1.107114 TCCGAGAGACTGAATGAGCC 58.893 55.000 0.00 0.00 0.00 4.70
312 335 0.248825 CCGAGAGACTGAATGAGCCG 60.249 60.000 0.00 0.00 0.00 5.52
313 336 0.248825 CGAGAGACTGAATGAGCCGG 60.249 60.000 0.00 0.00 0.00 6.13
314 337 0.529555 GAGAGACTGAATGAGCCGGC 60.530 60.000 21.89 21.89 0.00 6.13
315 338 1.880340 GAGACTGAATGAGCCGGCG 60.880 63.158 23.20 7.32 0.00 6.46
316 339 2.184322 GACTGAATGAGCCGGCGA 59.816 61.111 23.20 12.86 0.00 5.54
317 340 1.227380 GACTGAATGAGCCGGCGAT 60.227 57.895 23.20 14.84 0.00 4.58
318 341 1.218230 GACTGAATGAGCCGGCGATC 61.218 60.000 23.20 15.31 0.00 3.69
319 342 1.227350 CTGAATGAGCCGGCGATCA 60.227 57.895 23.20 21.10 0.00 2.92
320 343 0.602106 CTGAATGAGCCGGCGATCAT 60.602 55.000 21.97 21.97 37.77 2.45
321 344 0.601046 TGAATGAGCCGGCGATCATC 60.601 55.000 26.17 19.90 35.11 2.92
322 345 0.320247 GAATGAGCCGGCGATCATCT 60.320 55.000 26.17 17.79 35.11 2.90
323 346 0.107456 AATGAGCCGGCGATCATCTT 59.893 50.000 26.17 13.51 35.11 2.40
324 347 0.602106 ATGAGCCGGCGATCATCTTG 60.602 55.000 21.97 0.00 30.27 3.02
325 348 1.068083 GAGCCGGCGATCATCTTGA 59.932 57.895 23.20 0.00 0.00 3.02
326 349 0.943359 GAGCCGGCGATCATCTTGAG 60.943 60.000 23.20 0.00 0.00 3.02
327 350 1.068083 GCCGGCGATCATCTTGAGA 59.932 57.895 12.58 0.00 0.00 3.27
328 351 0.320247 GCCGGCGATCATCTTGAGAT 60.320 55.000 12.58 0.00 34.56 2.75
329 352 1.875576 GCCGGCGATCATCTTGAGATT 60.876 52.381 12.58 0.00 31.21 2.40
330 353 2.487934 CCGGCGATCATCTTGAGATTT 58.512 47.619 9.30 0.00 31.21 2.17
331 354 2.874701 CCGGCGATCATCTTGAGATTTT 59.125 45.455 9.30 0.00 31.21 1.82
332 355 4.058124 CCGGCGATCATCTTGAGATTTTA 58.942 43.478 9.30 0.00 31.21 1.52
333 356 4.084328 CCGGCGATCATCTTGAGATTTTAC 60.084 45.833 9.30 0.00 31.21 2.01
334 357 4.375405 CGGCGATCATCTTGAGATTTTACG 60.375 45.833 0.00 0.00 31.21 3.18
335 358 4.745125 GGCGATCATCTTGAGATTTTACGA 59.255 41.667 0.00 0.00 31.21 3.43
336 359 5.234329 GGCGATCATCTTGAGATTTTACGAA 59.766 40.000 0.00 0.00 31.21 3.85
337 360 6.350974 GCGATCATCTTGAGATTTTACGAAG 58.649 40.000 0.00 0.00 31.21 3.79
338 361 6.019479 GCGATCATCTTGAGATTTTACGAAGT 60.019 38.462 0.00 0.00 37.29 3.01
339 362 7.551340 CGATCATCTTGAGATTTTACGAAGTC 58.449 38.462 0.00 0.00 35.39 3.01
340 363 7.220875 CGATCATCTTGAGATTTTACGAAGTCA 59.779 37.037 0.00 0.00 35.39 3.41
341 364 7.582435 TCATCTTGAGATTTTACGAAGTCAC 57.418 36.000 0.00 0.00 35.39 3.67
342 365 6.590292 TCATCTTGAGATTTTACGAAGTCACC 59.410 38.462 0.00 0.00 35.39 4.02
343 366 4.921515 TCTTGAGATTTTACGAAGTCACCG 59.078 41.667 0.00 0.00 43.93 4.94
344 367 4.247267 TGAGATTTTACGAAGTCACCGT 57.753 40.909 0.00 0.00 43.93 4.83
345 368 5.375417 TGAGATTTTACGAAGTCACCGTA 57.625 39.130 0.00 0.00 43.93 4.02
346 369 5.396484 TGAGATTTTACGAAGTCACCGTAG 58.604 41.667 0.00 0.00 43.93 3.51
347 370 5.181811 TGAGATTTTACGAAGTCACCGTAGA 59.818 40.000 0.00 0.00 43.93 2.59
348 371 5.397326 AGATTTTACGAAGTCACCGTAGAC 58.603 41.667 0.00 0.00 43.93 2.59
349 372 4.566545 TTTTACGAAGTCACCGTAGACA 57.433 40.909 7.16 0.00 43.93 3.41
350 373 3.542712 TTACGAAGTCACCGTAGACAC 57.457 47.619 7.16 1.09 43.93 3.67
351 374 0.595095 ACGAAGTCACCGTAGACACC 59.405 55.000 7.16 0.00 29.74 4.16
352 375 0.879765 CGAAGTCACCGTAGACACCT 59.120 55.000 7.16 0.00 40.98 4.00
353 376 1.135746 CGAAGTCACCGTAGACACCTC 60.136 57.143 7.16 1.04 40.98 3.85
354 377 0.879765 AAGTCACCGTAGACACCTCG 59.120 55.000 7.16 0.00 40.98 4.63
355 378 0.250640 AGTCACCGTAGACACCTCGT 60.251 55.000 7.16 0.00 40.98 4.18
356 379 1.002430 AGTCACCGTAGACACCTCGTA 59.998 52.381 7.16 0.00 40.98 3.43
357 380 1.396301 GTCACCGTAGACACCTCGTAG 59.604 57.143 0.16 0.00 38.40 3.51
358 381 1.002430 TCACCGTAGACACCTCGTAGT 59.998 52.381 0.00 0.00 0.00 2.73
359 382 1.396301 CACCGTAGACACCTCGTAGTC 59.604 57.143 0.00 0.00 35.02 2.59
360 383 0.649475 CCGTAGACACCTCGTAGTCG 59.351 60.000 0.00 0.00 39.67 4.18
361 384 1.633561 CGTAGACACCTCGTAGTCGA 58.366 55.000 0.00 0.00 44.12 4.20
362 385 2.200067 CGTAGACACCTCGTAGTCGAT 58.800 52.381 0.00 0.00 45.21 3.59
363 386 2.033917 CGTAGACACCTCGTAGTCGATG 60.034 54.545 0.00 0.00 45.21 3.84
364 387 1.380524 AGACACCTCGTAGTCGATGG 58.619 55.000 0.00 0.00 45.21 3.51
365 388 1.065636 AGACACCTCGTAGTCGATGGA 60.066 52.381 0.00 0.00 45.21 3.41
366 389 1.741706 GACACCTCGTAGTCGATGGAA 59.258 52.381 0.00 0.00 45.21 3.53
367 390 2.163010 GACACCTCGTAGTCGATGGAAA 59.837 50.000 0.00 0.00 45.21 3.13
368 391 2.094854 ACACCTCGTAGTCGATGGAAAC 60.095 50.000 0.00 0.00 45.21 2.78
369 392 1.131883 ACCTCGTAGTCGATGGAAACG 59.868 52.381 7.33 7.33 45.21 3.60
370 393 1.131883 CCTCGTAGTCGATGGAAACGT 59.868 52.381 11.75 0.00 45.21 3.99
371 394 2.438583 CTCGTAGTCGATGGAAACGTC 58.561 52.381 11.75 0.00 45.21 4.34
372 395 2.079158 TCGTAGTCGATGGAAACGTCT 58.921 47.619 11.75 0.00 44.51 4.18
373 396 2.094894 TCGTAGTCGATGGAAACGTCTC 59.905 50.000 11.75 0.00 44.51 3.36
374 397 2.790468 CGTAGTCGATGGAAACGTCTCC 60.790 54.545 0.00 0.00 44.51 3.71
375 398 1.546961 AGTCGATGGAAACGTCTCCT 58.453 50.000 9.80 0.00 44.51 3.69
376 399 1.473278 AGTCGATGGAAACGTCTCCTC 59.527 52.381 9.80 3.60 44.51 3.71
377 400 0.815734 TCGATGGAAACGTCTCCTCC 59.184 55.000 9.80 4.35 44.51 4.30
378 401 0.179108 CGATGGAAACGTCTCCTCCC 60.179 60.000 9.80 0.00 44.51 4.30
379 402 0.902531 GATGGAAACGTCTCCTCCCA 59.097 55.000 9.80 1.52 43.31 4.37
380 403 0.613777 ATGGAAACGTCTCCTCCCAC 59.386 55.000 9.80 0.00 36.35 4.61
381 404 0.471211 TGGAAACGTCTCCTCCCACT 60.471 55.000 9.80 0.00 36.35 4.00
382 405 1.203087 TGGAAACGTCTCCTCCCACTA 60.203 52.381 9.80 0.00 36.35 2.74
383 406 1.897802 GGAAACGTCTCCTCCCACTAA 59.102 52.381 0.00 0.00 32.21 2.24
384 407 2.301009 GGAAACGTCTCCTCCCACTAAA 59.699 50.000 0.00 0.00 32.21 1.85
385 408 3.324117 GAAACGTCTCCTCCCACTAAAC 58.676 50.000 0.00 0.00 0.00 2.01
386 409 0.886563 ACGTCTCCTCCCACTAAACG 59.113 55.000 0.00 0.00 35.00 3.60
387 410 0.458025 CGTCTCCTCCCACTAAACGC 60.458 60.000 0.00 0.00 0.00 4.84
388 411 0.458025 GTCTCCTCCCACTAAACGCG 60.458 60.000 3.53 3.53 0.00 6.01
389 412 0.896940 TCTCCTCCCACTAAACGCGT 60.897 55.000 5.58 5.58 0.00 6.01
390 413 0.736325 CTCCTCCCACTAAACGCGTG 60.736 60.000 14.98 2.11 0.00 5.34
391 414 1.005394 CCTCCCACTAAACGCGTGT 60.005 57.895 14.98 10.93 0.00 4.49
392 415 1.012486 CCTCCCACTAAACGCGTGTC 61.012 60.000 14.98 0.00 0.00 3.67
393 416 0.038526 CTCCCACTAAACGCGTGTCT 60.039 55.000 14.98 2.74 0.00 3.41
394 417 0.390124 TCCCACTAAACGCGTGTCTT 59.610 50.000 14.98 6.14 0.00 3.01
395 418 0.788391 CCCACTAAACGCGTGTCTTC 59.212 55.000 14.98 0.00 0.00 2.87
396 419 0.433492 CCACTAAACGCGTGTCTTCG 59.567 55.000 14.98 1.81 0.00 3.79
397 420 0.433492 CACTAAACGCGTGTCTTCGG 59.567 55.000 14.98 3.09 0.00 4.30
398 421 0.311790 ACTAAACGCGTGTCTTCGGA 59.688 50.000 14.98 0.00 0.00 4.55
399 422 1.269206 ACTAAACGCGTGTCTTCGGAA 60.269 47.619 14.98 0.00 0.00 4.30
400 423 1.788308 CTAAACGCGTGTCTTCGGAAA 59.212 47.619 14.98 0.00 0.00 3.13
401 424 1.223187 AAACGCGTGTCTTCGGAAAT 58.777 45.000 14.98 0.00 0.00 2.17
402 425 0.788391 AACGCGTGTCTTCGGAAATC 59.212 50.000 14.98 0.00 0.00 2.17
403 426 1.012486 ACGCGTGTCTTCGGAAATCC 61.012 55.000 12.93 0.00 0.00 3.01
404 427 0.736325 CGCGTGTCTTCGGAAATCCT 60.736 55.000 0.00 0.00 0.00 3.24
405 428 0.721718 GCGTGTCTTCGGAAATCCTG 59.278 55.000 0.00 0.00 0.00 3.86
406 429 1.671850 GCGTGTCTTCGGAAATCCTGA 60.672 52.381 0.00 0.00 0.00 3.86
407 430 2.683968 CGTGTCTTCGGAAATCCTGAA 58.316 47.619 0.00 2.86 0.00 3.02
408 431 3.064207 CGTGTCTTCGGAAATCCTGAAA 58.936 45.455 0.00 0.00 31.72 2.69
409 432 3.496884 CGTGTCTTCGGAAATCCTGAAAA 59.503 43.478 0.00 0.00 31.72 2.29
410 433 4.024387 CGTGTCTTCGGAAATCCTGAAAAA 60.024 41.667 0.00 0.00 31.72 1.94
411 434 5.334879 CGTGTCTTCGGAAATCCTGAAAAAT 60.335 40.000 0.00 0.00 31.72 1.82
412 435 6.128391 CGTGTCTTCGGAAATCCTGAAAAATA 60.128 38.462 0.00 0.00 31.72 1.40
413 436 7.572353 CGTGTCTTCGGAAATCCTGAAAAATAA 60.572 37.037 0.00 0.00 31.72 1.40
414 437 8.079809 GTGTCTTCGGAAATCCTGAAAAATAAA 58.920 33.333 0.00 0.00 31.72 1.40
415 438 8.296713 TGTCTTCGGAAATCCTGAAAAATAAAG 58.703 33.333 0.00 0.00 31.72 1.85
416 439 7.273598 GTCTTCGGAAATCCTGAAAAATAAAGC 59.726 37.037 0.00 0.00 31.72 3.51
417 440 5.636837 TCGGAAATCCTGAAAAATAAAGCG 58.363 37.500 0.00 0.00 0.00 4.68
418 441 5.413213 TCGGAAATCCTGAAAAATAAAGCGA 59.587 36.000 0.00 0.00 0.00 4.93
419 442 5.739161 CGGAAATCCTGAAAAATAAAGCGAG 59.261 40.000 0.00 0.00 0.00 5.03
420 443 5.516696 GGAAATCCTGAAAAATAAAGCGAGC 59.483 40.000 0.00 0.00 0.00 5.03
421 444 5.643379 AATCCTGAAAAATAAAGCGAGCA 57.357 34.783 0.00 0.00 0.00 4.26
422 445 5.841957 ATCCTGAAAAATAAAGCGAGCAT 57.158 34.783 0.00 0.00 0.00 3.79
423 446 5.235305 TCCTGAAAAATAAAGCGAGCATC 57.765 39.130 0.00 0.00 0.00 3.91
424 447 4.699735 TCCTGAAAAATAAAGCGAGCATCA 59.300 37.500 0.00 0.00 33.17 3.07
425 448 5.032863 CCTGAAAAATAAAGCGAGCATCAG 58.967 41.667 0.00 0.00 33.17 2.90
426 449 5.163723 CCTGAAAAATAAAGCGAGCATCAGA 60.164 40.000 0.00 0.00 35.05 3.27
427 450 6.252967 TGAAAAATAAAGCGAGCATCAGAA 57.747 33.333 0.00 0.00 33.17 3.02
428 451 6.317088 TGAAAAATAAAGCGAGCATCAGAAG 58.683 36.000 0.00 0.00 33.17 2.85
429 452 5.886960 AAAATAAAGCGAGCATCAGAAGT 57.113 34.783 0.00 0.00 33.17 3.01
430 453 5.886960 AAATAAAGCGAGCATCAGAAGTT 57.113 34.783 0.00 0.00 33.17 2.66
431 454 4.871993 ATAAAGCGAGCATCAGAAGTTG 57.128 40.909 0.00 0.00 33.17 3.16
432 455 2.462456 AAGCGAGCATCAGAAGTTGA 57.538 45.000 0.00 0.00 40.85 3.18
433 456 2.462456 AGCGAGCATCAGAAGTTGAA 57.538 45.000 0.00 0.00 39.77 2.69
434 457 2.072298 AGCGAGCATCAGAAGTTGAAC 58.928 47.619 0.00 0.00 39.77 3.18
435 458 1.129437 GCGAGCATCAGAAGTTGAACC 59.871 52.381 0.00 0.00 39.77 3.62
436 459 1.734465 CGAGCATCAGAAGTTGAACCC 59.266 52.381 0.00 0.00 39.77 4.11
437 460 2.613977 CGAGCATCAGAAGTTGAACCCT 60.614 50.000 0.00 0.00 39.77 4.34
438 461 2.746362 GAGCATCAGAAGTTGAACCCTG 59.254 50.000 8.47 8.47 39.77 4.45
439 462 2.373169 AGCATCAGAAGTTGAACCCTGA 59.627 45.455 16.60 16.60 39.77 3.86
440 463 3.009916 AGCATCAGAAGTTGAACCCTGAT 59.990 43.478 18.84 18.84 44.48 2.90
442 465 3.423539 TCAGAAGTTGAACCCTGATGG 57.576 47.619 12.13 0.00 41.37 3.51
453 476 2.543569 CCTGATGGGCTGGGATACA 58.456 57.895 0.00 0.00 39.74 2.29
454 477 0.846015 CCTGATGGGCTGGGATACAA 59.154 55.000 0.00 0.00 39.74 2.41
455 478 1.477558 CCTGATGGGCTGGGATACAAC 60.478 57.143 0.00 0.00 39.74 3.32
456 479 1.492176 CTGATGGGCTGGGATACAACT 59.508 52.381 0.00 0.00 39.74 3.16
457 480 1.490490 TGATGGGCTGGGATACAACTC 59.510 52.381 0.00 0.00 39.74 3.01
458 481 1.771255 GATGGGCTGGGATACAACTCT 59.229 52.381 0.00 0.00 39.74 3.24
459 482 1.668826 TGGGCTGGGATACAACTCTT 58.331 50.000 0.00 0.00 39.74 2.85
460 483 1.559682 TGGGCTGGGATACAACTCTTC 59.440 52.381 0.00 0.00 39.74 2.87
461 484 1.559682 GGGCTGGGATACAACTCTTCA 59.440 52.381 0.00 0.00 39.74 3.02
462 485 2.633488 GGCTGGGATACAACTCTTCAC 58.367 52.381 0.00 0.00 39.74 3.18
463 486 2.633488 GCTGGGATACAACTCTTCACC 58.367 52.381 0.00 0.00 39.74 4.02
464 487 2.237392 GCTGGGATACAACTCTTCACCT 59.763 50.000 0.00 0.00 39.74 4.00
465 488 3.451178 GCTGGGATACAACTCTTCACCTA 59.549 47.826 0.00 0.00 39.74 3.08
466 489 4.081087 GCTGGGATACAACTCTTCACCTAA 60.081 45.833 0.00 0.00 39.74 2.69
467 490 5.416271 TGGGATACAACTCTTCACCTAAC 57.584 43.478 0.00 0.00 39.74 2.34
468 491 4.224370 TGGGATACAACTCTTCACCTAACC 59.776 45.833 0.00 0.00 39.74 2.85
469 492 4.224370 GGGATACAACTCTTCACCTAACCA 59.776 45.833 0.00 0.00 39.74 3.67
470 493 5.104485 GGGATACAACTCTTCACCTAACCAT 60.104 44.000 0.00 0.00 39.74 3.55
471 494 6.415573 GGATACAACTCTTCACCTAACCATT 58.584 40.000 0.00 0.00 0.00 3.16
472 495 6.539103 GGATACAACTCTTCACCTAACCATTC 59.461 42.308 0.00 0.00 0.00 2.67
473 496 5.304686 ACAACTCTTCACCTAACCATTCA 57.695 39.130 0.00 0.00 0.00 2.57
474 497 5.690865 ACAACTCTTCACCTAACCATTCAA 58.309 37.500 0.00 0.00 0.00 2.69
475 498 5.531287 ACAACTCTTCACCTAACCATTCAAC 59.469 40.000 0.00 0.00 0.00 3.18
476 499 5.568620 ACTCTTCACCTAACCATTCAACT 57.431 39.130 0.00 0.00 0.00 3.16
477 500 6.681729 ACTCTTCACCTAACCATTCAACTA 57.318 37.500 0.00 0.00 0.00 2.24
478 501 6.465084 ACTCTTCACCTAACCATTCAACTAC 58.535 40.000 0.00 0.00 0.00 2.73
479 502 6.042781 ACTCTTCACCTAACCATTCAACTACA 59.957 38.462 0.00 0.00 0.00 2.74
480 503 6.464222 TCTTCACCTAACCATTCAACTACAG 58.536 40.000 0.00 0.00 0.00 2.74
481 504 5.160607 TCACCTAACCATTCAACTACAGG 57.839 43.478 0.00 0.00 0.00 4.00
482 505 4.595781 TCACCTAACCATTCAACTACAGGT 59.404 41.667 0.00 0.00 35.56 4.00
483 506 5.072600 TCACCTAACCATTCAACTACAGGTT 59.927 40.000 0.00 0.00 44.23 3.50
498 521 0.250338 AGGTTGGTTCGCAGTTCCTC 60.250 55.000 0.00 0.00 0.00 3.71
504 527 1.480954 GGTTCGCAGTTCCTCCTATGA 59.519 52.381 0.00 0.00 0.00 2.15
506 529 3.596214 GTTCGCAGTTCCTCCTATGAAA 58.404 45.455 0.00 0.00 0.00 2.69
507 530 3.973206 TCGCAGTTCCTCCTATGAAAA 57.027 42.857 0.00 0.00 0.00 2.29
511 534 6.049149 TCGCAGTTCCTCCTATGAAAATTAG 58.951 40.000 0.00 0.00 0.00 1.73
517 540 8.164070 AGTTCCTCCTATGAAAATTAGTGTGTT 58.836 33.333 0.00 0.00 0.00 3.32
533 556 8.703604 TTAGTGTGTTCAATCAGCTAGTATTC 57.296 34.615 0.00 0.00 0.00 1.75
539 563 6.127563 TGTTCAATCAGCTAGTATTCGTACCA 60.128 38.462 0.00 0.00 0.00 3.25
542 566 6.769341 TCAATCAGCTAGTATTCGTACCACTA 59.231 38.462 0.00 0.00 0.00 2.74
557 581 1.215244 CACTATGGTGCATGCTCTCG 58.785 55.000 20.33 7.72 36.61 4.04
559 583 0.390492 CTATGGTGCATGCTCTCGGA 59.610 55.000 20.33 0.00 0.00 4.55
560 584 0.104855 TATGGTGCATGCTCTCGGAC 59.895 55.000 20.33 7.16 0.00 4.79
561 585 2.887568 GGTGCATGCTCTCGGACG 60.888 66.667 20.33 0.00 0.00 4.79
562 586 2.887568 GTGCATGCTCTCGGACGG 60.888 66.667 20.33 0.00 0.00 4.79
576 618 1.809684 GGACGGTTTTTCAGAGGGAG 58.190 55.000 0.00 0.00 0.00 4.30
591 633 3.131400 AGAGGGAGATGTCGAGTTAAAGC 59.869 47.826 0.00 0.00 0.00 3.51
632 740 8.999431 TGGATAGGATAATACAAAGAATTTCGC 58.001 33.333 0.00 0.00 35.03 4.70
639 1520 9.173939 GATAATACAAAGAATTTCGCCATCAAG 57.826 33.333 0.00 0.00 35.03 3.02
763 1651 1.774639 CCATTTTGCAGTGTGCTGAC 58.225 50.000 0.00 0.00 45.31 3.51
764 1652 1.338973 CCATTTTGCAGTGTGCTGACT 59.661 47.619 0.00 0.00 45.31 3.41
765 1653 2.390938 CATTTTGCAGTGTGCTGACTG 58.609 47.619 10.38 10.38 45.31 3.51
769 1657 2.029518 CAGTGTGCTGACTGCCGA 59.970 61.111 1.50 0.00 45.28 5.54
778 1666 1.003718 TGACTGCCGAGACGAGAGA 60.004 57.895 0.00 0.00 0.00 3.10
783 1671 2.815298 GCCGAGACGAGAGACGAGG 61.815 68.421 0.00 0.00 45.77 4.63
925 3613 3.249189 GCTCCTCCACCACCACCA 61.249 66.667 0.00 0.00 0.00 4.17
928 3616 2.854032 CCTCCACCACCACCACCT 60.854 66.667 0.00 0.00 0.00 4.00
929 3617 2.750350 CTCCACCACCACCACCTC 59.250 66.667 0.00 0.00 0.00 3.85
931 3619 3.966543 CCACCACCACCACCTCCC 61.967 72.222 0.00 0.00 0.00 4.30
932 3620 2.854032 CACCACCACCACCTCCCT 60.854 66.667 0.00 0.00 0.00 4.20
1332 4031 4.154347 CTCCACTCCTCCCTGCGC 62.154 72.222 0.00 0.00 0.00 6.09
1376 4075 2.574399 GCGCTCTCCTTCCTCGTT 59.426 61.111 0.00 0.00 0.00 3.85
1385 4084 0.613260 CCTTCCTCGTTGTCCATGGA 59.387 55.000 11.44 11.44 0.00 3.41
1387 4086 2.350522 CTTCCTCGTTGTCCATGGAAG 58.649 52.381 18.20 9.85 44.88 3.46
1388 4087 0.036388 TCCTCGTTGTCCATGGAAGC 60.036 55.000 18.20 5.61 0.00 3.86
1393 4096 1.675714 CGTTGTCCATGGAAGCAGCTA 60.676 52.381 18.20 0.00 0.00 3.32
1405 4116 1.003355 GCAGCTAGTTCCTGTGCCA 60.003 57.895 0.00 0.00 32.93 4.92
1418 4129 1.810030 GTGCCAGGATTCCGTCGTC 60.810 63.158 0.00 0.00 0.00 4.20
1451 4167 6.422100 GCAATCTAGTTCTAATCGATGCTTGA 59.578 38.462 0.00 0.38 0.00 3.02
1466 4182 1.518056 CTTGATGGTGTTGCGGTGCT 61.518 55.000 0.00 0.00 0.00 4.40
1650 4366 1.160137 ATCTGAAACTGCACGAAGCC 58.840 50.000 0.00 0.00 44.83 4.35
1940 4656 8.475639 TCTTAGTAGTATAAAAGTGCTTGGAGG 58.524 37.037 0.00 0.00 0.00 4.30
1995 4716 0.459934 GAGTACCAGAGCAGCAGCAG 60.460 60.000 3.17 0.00 45.49 4.24
1996 4717 2.105466 GTACCAGAGCAGCAGCAGC 61.105 63.158 3.17 0.46 45.49 5.25
1997 4718 2.586293 TACCAGAGCAGCAGCAGCA 61.586 57.895 12.92 0.00 45.49 4.41
2087 4808 1.377202 TGCTTTCGATGGAGTGGCC 60.377 57.895 0.00 0.00 37.10 5.36
2101 4822 4.623374 GGAGTGGCCATAAAAGTGCAACT 61.623 47.826 9.72 0.00 43.92 3.16
2120 4841 3.200522 GGCAATCTCAAAGCCCCG 58.799 61.111 0.00 0.00 42.58 5.73
2125 4846 1.067635 CAATCTCAAAGCCCCGTTTGG 60.068 52.381 0.00 0.00 37.89 3.28
2144 4873 1.654023 GAACGCCTGAATTTCCCCCG 61.654 60.000 0.00 0.00 0.00 5.73
2150 4879 2.733956 CCTGAATTTCCCCCGAATTCA 58.266 47.619 6.22 10.68 45.94 2.57
2151 4880 3.299503 CCTGAATTTCCCCCGAATTCAT 58.700 45.455 6.22 0.00 46.51 2.57
2154 4883 2.157640 ATTTCCCCCGAATTCATGCA 57.842 45.000 6.22 0.00 0.00 3.96
2157 4886 0.682855 TCCCCCGAATTCATGCAACC 60.683 55.000 6.22 0.00 0.00 3.77
2159 4888 0.740737 CCCCGAATTCATGCAACCTC 59.259 55.000 6.22 0.00 0.00 3.85
2161 4890 0.248215 CCGAATTCATGCAACCTCGC 60.248 55.000 6.22 0.00 0.00 5.03
2163 4892 1.135717 CGAATTCATGCAACCTCGCAA 60.136 47.619 6.22 0.00 46.87 4.85
2164 4893 2.478370 CGAATTCATGCAACCTCGCAAT 60.478 45.455 6.22 0.00 46.87 3.56
2165 4894 2.857592 ATTCATGCAACCTCGCAATC 57.142 45.000 0.00 0.00 46.87 2.67
2167 4896 1.372582 TCATGCAACCTCGCAATCTC 58.627 50.000 0.00 0.00 46.87 2.75
2168 4897 0.027194 CATGCAACCTCGCAATCTCG 59.973 55.000 0.00 0.00 46.87 4.04
2171 4900 0.302890 GCAACCTCGCAATCTCGATG 59.697 55.000 0.00 0.00 37.87 3.84
2172 4901 0.302890 CAACCTCGCAATCTCGATGC 59.697 55.000 0.00 0.00 37.87 3.91
2174 4903 0.529337 ACCTCGCAATCTCGATGCTG 60.529 55.000 7.80 2.34 41.64 4.41
2175 4904 1.563655 CTCGCAATCTCGATGCTGC 59.436 57.895 7.80 5.48 41.64 5.25
2176 4905 1.829349 CTCGCAATCTCGATGCTGCC 61.829 60.000 7.80 0.00 41.64 4.85
2177 4906 1.886313 CGCAATCTCGATGCTGCCT 60.886 57.895 7.80 0.00 41.64 4.75
2178 4907 1.434622 CGCAATCTCGATGCTGCCTT 61.435 55.000 7.80 0.00 41.64 4.35
2180 4909 1.533338 GCAATCTCGATGCTGCCTTTG 60.533 52.381 2.24 0.00 40.64 2.77
2181 4910 1.065102 CAATCTCGATGCTGCCTTTGG 59.935 52.381 0.00 0.00 0.00 3.28
2183 4912 0.391661 TCTCGATGCTGCCTTTGGTC 60.392 55.000 0.00 0.00 0.00 4.02
2184 4913 1.372087 CTCGATGCTGCCTTTGGTCC 61.372 60.000 0.00 0.00 0.00 4.46
2185 4914 1.675310 CGATGCTGCCTTTGGTCCA 60.675 57.895 0.00 0.00 0.00 4.02
2187 5189 1.926511 GATGCTGCCTTTGGTCCACG 61.927 60.000 0.00 0.00 0.00 4.94
2191 6163 2.676471 GCCTTTGGTCCACGGCAT 60.676 61.111 21.28 0.00 42.06 4.40
2192 6164 2.275380 GCCTTTGGTCCACGGCATT 61.275 57.895 21.28 0.00 42.06 3.56
2198 6170 2.268076 GGTCCACGGCATTGCAAGT 61.268 57.895 11.39 7.07 0.00 3.16
2203 6175 1.569708 CACGGCATTGCAAGTGTTTT 58.430 45.000 21.08 0.00 35.31 2.43
2224 6196 5.927281 TTTTTGAGAGTACGGCCTACTAT 57.073 39.130 12.97 10.81 35.66 2.12
2226 6198 7.592885 TTTTTGAGAGTACGGCCTACTATAT 57.407 36.000 12.97 5.01 35.66 0.86
2227 6199 7.592885 TTTTGAGAGTACGGCCTACTATATT 57.407 36.000 12.97 2.89 35.66 1.28
2232 6204 9.305555 TGAGAGTACGGCCTACTATATTTTAAT 57.694 33.333 12.97 0.00 35.66 1.40
2259 6231 9.784531 AGAAGACAGAAATCAATCAAGTAAGAA 57.215 29.630 0.00 0.00 0.00 2.52
2260 6232 9.818796 GAAGACAGAAATCAATCAAGTAAGAAC 57.181 33.333 0.00 0.00 0.00 3.01
2261 6233 9.566432 AAGACAGAAATCAATCAAGTAAGAACT 57.434 29.630 0.00 0.00 37.65 3.01
2262 6234 9.213799 AGACAGAAATCAATCAAGTAAGAACTC 57.786 33.333 0.00 0.00 33.75 3.01
2263 6235 9.213799 GACAGAAATCAATCAAGTAAGAACTCT 57.786 33.333 0.00 0.00 33.75 3.24
2268 6240 8.779354 AATCAATCAAGTAAGAACTCTACACC 57.221 34.615 0.00 0.00 33.75 4.16
2270 6242 6.269077 TCAATCAAGTAAGAACTCTACACCCA 59.731 38.462 0.00 0.00 33.75 4.51
2272 6244 6.282199 TCAAGTAAGAACTCTACACCCATC 57.718 41.667 0.00 0.00 33.75 3.51
2273 6245 4.985538 AGTAAGAACTCTACACCCATCG 57.014 45.455 0.00 0.00 0.00 3.84
2274 6246 4.342359 AGTAAGAACTCTACACCCATCGT 58.658 43.478 0.00 0.00 0.00 3.73
2275 6247 5.336531 AAGTAAGAACTCTACACCCATCGTG 60.337 44.000 0.00 0.00 41.09 4.35
2276 6248 2.803956 AGAACTCTACACCCATCGTGA 58.196 47.619 0.00 0.00 46.20 4.35
2277 6249 2.492484 AGAACTCTACACCCATCGTGAC 59.508 50.000 0.00 0.00 46.20 3.67
2278 6250 1.919240 ACTCTACACCCATCGTGACA 58.081 50.000 0.00 0.00 46.20 3.58
2281 6253 3.260884 ACTCTACACCCATCGTGACAATT 59.739 43.478 0.00 0.00 46.20 2.32
2282 6254 4.464951 ACTCTACACCCATCGTGACAATTA 59.535 41.667 0.00 0.00 46.20 1.40
2283 6255 4.751060 TCTACACCCATCGTGACAATTAC 58.249 43.478 0.00 0.00 46.20 1.89
2284 6256 3.410631 ACACCCATCGTGACAATTACA 57.589 42.857 0.00 0.00 46.20 2.41
2285 6257 3.745799 ACACCCATCGTGACAATTACAA 58.254 40.909 0.00 0.00 46.20 2.41
2286 6258 3.500680 ACACCCATCGTGACAATTACAAC 59.499 43.478 0.00 0.00 46.20 3.32
2287 6259 3.078837 ACCCATCGTGACAATTACAACC 58.921 45.455 0.00 0.00 0.00 3.77
2288 6260 3.078097 CCCATCGTGACAATTACAACCA 58.922 45.455 0.00 0.00 0.00 3.67
2308 6334 1.371635 GACGCGGCATTGCAAGTTT 60.372 52.632 7.34 0.00 34.15 2.66
2318 6344 3.989167 GCATTGCAAGTTTTACATGAGCA 59.011 39.130 4.94 0.00 0.00 4.26
2333 6359 1.343142 TGAGCAGAAAGGAAGCGTACA 59.657 47.619 0.00 0.00 0.00 2.90
2335 6361 1.618837 AGCAGAAAGGAAGCGTACAGA 59.381 47.619 0.00 0.00 0.00 3.41
2336 6362 2.234908 AGCAGAAAGGAAGCGTACAGAT 59.765 45.455 0.00 0.00 0.00 2.90
2341 6378 6.183360 GCAGAAAGGAAGCGTACAGATAAAAT 60.183 38.462 0.00 0.00 0.00 1.82
2350 6387 4.262976 GCGTACAGATAAAATGCTGTTTGC 59.737 41.667 0.00 0.00 42.33 3.68
2385 6422 1.447938 CACGTCGCTTGCAAAAATCAC 59.552 47.619 0.00 0.00 0.00 3.06
2392 6429 3.365820 CGCTTGCAAAAATCACCAGATTC 59.634 43.478 0.00 0.00 43.52 2.52
2450 6487 5.104776 ACCGTACCACTAGTAGTCACTGATA 60.105 44.000 0.00 0.00 36.14 2.15
2462 6499 7.629009 AGTAGTCACTGATAGCGACAATGCTA 61.629 42.308 0.00 0.00 41.73 3.49
2474 6511 4.201851 GCGACAATGCTACATTGATCAACT 60.202 41.667 23.21 1.30 33.51 3.16
2507 6545 1.280133 CTCCAGATGAACTCAAGCCCA 59.720 52.381 0.00 0.00 0.00 5.36
2526 6564 4.696877 GCCCATTTTGAATTTTCAGGAAGG 59.303 41.667 1.02 0.20 38.61 3.46
2528 6566 6.298361 CCCATTTTGAATTTTCAGGAAGGTT 58.702 36.000 0.00 0.00 38.61 3.50
2529 6567 6.205270 CCCATTTTGAATTTTCAGGAAGGTTG 59.795 38.462 0.00 0.00 38.61 3.77
2530 6568 6.293571 CCATTTTGAATTTTCAGGAAGGTTGC 60.294 38.462 0.00 0.00 38.61 4.17
2531 6569 3.641437 TGAATTTTCAGGAAGGTTGCG 57.359 42.857 0.00 0.00 32.50 4.85
2532 6570 2.288152 TGAATTTTCAGGAAGGTTGCGC 60.288 45.455 0.00 0.00 32.50 6.09
2533 6571 1.327303 ATTTTCAGGAAGGTTGCGCA 58.673 45.000 5.66 5.66 0.00 6.09
2534 6572 0.667993 TTTTCAGGAAGGTTGCGCAG 59.332 50.000 11.31 0.00 0.00 5.18
2535 6573 0.465460 TTTCAGGAAGGTTGCGCAGT 60.465 50.000 11.31 0.00 0.00 4.40
2536 6574 1.165907 TTCAGGAAGGTTGCGCAGTG 61.166 55.000 11.31 1.10 0.00 3.66
2537 6575 1.893808 CAGGAAGGTTGCGCAGTGT 60.894 57.895 11.31 0.00 0.00 3.55
2538 6576 1.598130 AGGAAGGTTGCGCAGTGTC 60.598 57.895 11.31 7.05 0.00 3.67
2539 6577 1.891919 GGAAGGTTGCGCAGTGTCA 60.892 57.895 11.31 0.00 0.00 3.58
2540 6578 1.571460 GAAGGTTGCGCAGTGTCAG 59.429 57.895 11.31 0.00 0.00 3.51
2541 6579 1.845809 GAAGGTTGCGCAGTGTCAGG 61.846 60.000 11.31 0.00 0.00 3.86
2542 6580 2.591715 GGTTGCGCAGTGTCAGGT 60.592 61.111 11.31 0.00 0.00 4.00
2543 6581 2.633657 GTTGCGCAGTGTCAGGTG 59.366 61.111 11.31 0.00 0.00 4.00
2544 6582 3.279116 TTGCGCAGTGTCAGGTGC 61.279 61.111 11.31 3.59 40.78 5.01
2549 6587 4.704833 CAGTGTCAGGTGCCGGGG 62.705 72.222 2.18 0.00 0.00 5.73
2569 6607 2.699768 CGGGCACATGCGTTTCCAT 61.700 57.895 0.00 0.00 43.26 3.41
2570 6608 1.372838 CGGGCACATGCGTTTCCATA 61.373 55.000 0.00 0.00 43.26 2.74
2571 6609 1.032014 GGGCACATGCGTTTCCATAT 58.968 50.000 0.00 0.00 43.26 1.78
2572 6610 1.269206 GGGCACATGCGTTTCCATATG 60.269 52.381 0.00 0.00 43.26 1.78
2573 6611 1.480205 GCACATGCGTTTCCATATGC 58.520 50.000 0.00 0.00 38.31 3.14
2574 6612 1.066002 GCACATGCGTTTCCATATGCT 59.934 47.619 0.00 0.00 41.24 3.79
2653 6703 9.706691 TTAGTTTATCTGCTACATATGCTAACC 57.293 33.333 1.58 0.00 0.00 2.85
2658 6708 9.653287 TTATCTGCTACATATGCTAACCATAAC 57.347 33.333 1.58 0.00 39.71 1.89
2659 6709 7.303182 TCTGCTACATATGCTAACCATAACT 57.697 36.000 1.58 0.00 39.71 2.24
2660 6710 8.417273 TCTGCTACATATGCTAACCATAACTA 57.583 34.615 1.58 0.00 39.71 2.24
2661 6711 8.866093 TCTGCTACATATGCTAACCATAACTAA 58.134 33.333 1.58 0.00 39.71 2.24
2662 6712 9.144747 CTGCTACATATGCTAACCATAACTAAG 57.855 37.037 1.58 0.00 39.71 2.18
2663 6713 7.602644 TGCTACATATGCTAACCATAACTAAGC 59.397 37.037 1.58 0.00 39.71 3.09
2664 6714 7.819900 GCTACATATGCTAACCATAACTAAGCT 59.180 37.037 1.58 0.00 39.71 3.74
2665 6715 9.360093 CTACATATGCTAACCATAACTAAGCTC 57.640 37.037 1.58 0.00 39.71 4.09
2666 6716 6.868864 ACATATGCTAACCATAACTAAGCTCG 59.131 38.462 1.58 0.00 39.71 5.03
2667 6717 4.054780 TGCTAACCATAACTAAGCTCGG 57.945 45.455 0.00 0.00 34.28 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
137 160 9.374711 ACCTCCATAAAAAGAACTGGAAATAAA 57.625 29.630 0.00 0.00 37.34 1.40
141 164 7.669089 AAACCTCCATAAAAAGAACTGGAAA 57.331 32.000 0.00 0.00 37.34 3.13
142 165 7.669089 AAAACCTCCATAAAAAGAACTGGAA 57.331 32.000 0.00 0.00 37.34 3.53
143 166 7.669089 AAAAACCTCCATAAAAAGAACTGGA 57.331 32.000 0.00 0.00 36.40 3.86
166 189 6.460399 GGGCTTGTGTGTACTGATGTTAAAAA 60.460 38.462 0.00 0.00 0.00 1.94
167 190 5.009210 GGGCTTGTGTGTACTGATGTTAAAA 59.991 40.000 0.00 0.00 0.00 1.52
168 191 4.517453 GGGCTTGTGTGTACTGATGTTAAA 59.483 41.667 0.00 0.00 0.00 1.52
169 192 4.069304 GGGCTTGTGTGTACTGATGTTAA 58.931 43.478 0.00 0.00 0.00 2.01
170 193 3.326588 AGGGCTTGTGTGTACTGATGTTA 59.673 43.478 0.00 0.00 0.00 2.41
171 194 2.106511 AGGGCTTGTGTGTACTGATGTT 59.893 45.455 0.00 0.00 0.00 2.71
172 195 1.699634 AGGGCTTGTGTGTACTGATGT 59.300 47.619 0.00 0.00 0.00 3.06
173 196 2.289631 TGAGGGCTTGTGTGTACTGATG 60.290 50.000 0.00 0.00 0.00 3.07
174 197 1.977854 TGAGGGCTTGTGTGTACTGAT 59.022 47.619 0.00 0.00 0.00 2.90
175 198 1.419381 TGAGGGCTTGTGTGTACTGA 58.581 50.000 0.00 0.00 0.00 3.41
176 199 2.479566 ATGAGGGCTTGTGTGTACTG 57.520 50.000 0.00 0.00 0.00 2.74
177 200 6.294564 CGTATATATGAGGGCTTGTGTGTACT 60.295 42.308 0.00 0.00 0.00 2.73
178 201 5.862323 CGTATATATGAGGGCTTGTGTGTAC 59.138 44.000 0.00 0.00 0.00 2.90
179 202 5.537295 ACGTATATATGAGGGCTTGTGTGTA 59.463 40.000 8.98 0.00 0.00 2.90
180 203 4.344102 ACGTATATATGAGGGCTTGTGTGT 59.656 41.667 8.98 0.00 0.00 3.72
181 204 4.686091 CACGTATATATGAGGGCTTGTGTG 59.314 45.833 8.98 0.00 0.00 3.82
182 205 4.344102 ACACGTATATATGAGGGCTTGTGT 59.656 41.667 8.98 0.00 32.49 3.72
183 206 4.883083 ACACGTATATATGAGGGCTTGTG 58.117 43.478 8.98 0.00 0.00 3.33
184 207 6.852420 ATACACGTATATATGAGGGCTTGT 57.148 37.500 8.98 4.31 0.00 3.16
185 208 7.768240 TGTATACACGTATATATGAGGGCTTG 58.232 38.462 8.98 0.00 31.45 4.01
186 209 7.949690 TGTATACACGTATATATGAGGGCTT 57.050 36.000 8.98 0.00 31.45 4.35
187 210 8.534954 AATGTATACACGTATATATGAGGGCT 57.465 34.615 7.96 0.00 32.52 5.19
188 211 8.410912 TGAATGTATACACGTATATATGAGGGC 58.589 37.037 7.96 0.00 32.52 5.19
199 222 9.687210 GTTCATAAGGATGAATGTATACACGTA 57.313 33.333 7.96 0.00 46.18 3.57
200 223 7.381408 CGTTCATAAGGATGAATGTATACACGT 59.619 37.037 7.96 0.00 46.18 4.49
201 224 7.619366 GCGTTCATAAGGATGAATGTATACACG 60.619 40.741 7.96 2.56 46.18 4.49
202 225 7.170828 TGCGTTCATAAGGATGAATGTATACAC 59.829 37.037 7.96 0.00 46.18 2.90
203 226 7.170828 GTGCGTTCATAAGGATGAATGTATACA 59.829 37.037 8.27 8.27 46.18 2.29
204 227 7.170828 TGTGCGTTCATAAGGATGAATGTATAC 59.829 37.037 17.01 14.29 46.18 1.47
205 228 7.170828 GTGTGCGTTCATAAGGATGAATGTATA 59.829 37.037 17.01 10.78 46.18 1.47
206 229 6.017934 GTGTGCGTTCATAAGGATGAATGTAT 60.018 38.462 17.01 0.00 46.18 2.29
207 230 5.293324 GTGTGCGTTCATAAGGATGAATGTA 59.707 40.000 17.01 12.11 46.18 2.29
208 231 4.094887 GTGTGCGTTCATAAGGATGAATGT 59.905 41.667 17.01 0.00 46.18 2.71
209 232 4.094739 TGTGTGCGTTCATAAGGATGAATG 59.905 41.667 13.24 13.24 46.18 2.67
210 233 4.094887 GTGTGTGCGTTCATAAGGATGAAT 59.905 41.667 3.83 0.00 46.18 2.57
211 234 3.435327 GTGTGTGCGTTCATAAGGATGAA 59.565 43.478 0.00 0.00 46.18 2.57
212 235 3.000041 GTGTGTGCGTTCATAAGGATGA 59.000 45.455 0.00 0.00 40.45 2.92
213 236 2.222796 CGTGTGTGCGTTCATAAGGATG 60.223 50.000 0.00 0.00 0.00 3.51
214 237 1.999735 CGTGTGTGCGTTCATAAGGAT 59.000 47.619 0.00 0.00 0.00 3.24
215 238 1.424403 CGTGTGTGCGTTCATAAGGA 58.576 50.000 0.00 0.00 0.00 3.36
216 239 0.179225 GCGTGTGTGCGTTCATAAGG 60.179 55.000 0.00 0.00 0.00 2.69
217 240 0.510790 TGCGTGTGTGCGTTCATAAG 59.489 50.000 0.00 0.00 37.81 1.73
218 241 0.233590 GTGCGTGTGTGCGTTCATAA 59.766 50.000 0.00 0.00 37.81 1.90
219 242 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
220 243 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
221 244 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
222 245 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
223 246 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
226 249 1.635663 GATAGGGTGTGCGTGTGTGC 61.636 60.000 0.00 0.00 0.00 4.57
227 250 0.037326 AGATAGGGTGTGCGTGTGTG 60.037 55.000 0.00 0.00 0.00 3.82
228 251 1.552578 TAGATAGGGTGTGCGTGTGT 58.447 50.000 0.00 0.00 0.00 3.72
229 252 2.890808 ATAGATAGGGTGTGCGTGTG 57.109 50.000 0.00 0.00 0.00 3.82
230 253 6.888088 TGTATATATAGATAGGGTGTGCGTGT 59.112 38.462 0.00 0.00 0.00 4.49
231 254 7.329588 TGTATATATAGATAGGGTGTGCGTG 57.670 40.000 0.00 0.00 0.00 5.34
232 255 7.999545 AGATGTATATATAGATAGGGTGTGCGT 59.000 37.037 2.50 0.00 0.00 5.24
233 256 8.397575 AGATGTATATATAGATAGGGTGTGCG 57.602 38.462 2.50 0.00 0.00 5.34
234 257 8.798402 GGAGATGTATATATAGATAGGGTGTGC 58.202 40.741 2.50 0.00 0.00 4.57
235 258 9.004717 CGGAGATGTATATATAGATAGGGTGTG 57.995 40.741 2.50 0.00 0.00 3.82
236 259 8.946248 TCGGAGATGTATATATAGATAGGGTGT 58.054 37.037 2.50 0.00 0.00 4.16
237 260 9.794719 TTCGGAGATGTATATATAGATAGGGTG 57.205 37.037 2.50 0.00 35.04 4.61
248 271 9.297037 TCATTCAGTCTTTCGGAGATGTATATA 57.703 33.333 0.00 0.00 36.61 0.86
249 272 8.183104 TCATTCAGTCTTTCGGAGATGTATAT 57.817 34.615 0.00 0.00 36.61 0.86
250 273 7.582667 TCATTCAGTCTTTCGGAGATGTATA 57.417 36.000 0.00 0.00 36.61 1.47
251 274 6.471233 TCATTCAGTCTTTCGGAGATGTAT 57.529 37.500 0.00 0.00 36.61 2.29
252 275 5.679894 GCTCATTCAGTCTTTCGGAGATGTA 60.680 44.000 0.00 0.00 36.61 2.29
253 276 4.753233 CTCATTCAGTCTTTCGGAGATGT 58.247 43.478 0.00 0.00 36.61 3.06
254 277 3.555139 GCTCATTCAGTCTTTCGGAGATG 59.445 47.826 0.00 0.00 36.61 2.90
255 278 3.431486 GGCTCATTCAGTCTTTCGGAGAT 60.431 47.826 0.00 0.00 36.61 2.75
256 279 2.093973 GGCTCATTCAGTCTTTCGGAGA 60.094 50.000 0.00 0.00 0.00 3.71
257 280 2.275318 GGCTCATTCAGTCTTTCGGAG 58.725 52.381 0.00 0.00 0.00 4.63
258 281 1.404181 CGGCTCATTCAGTCTTTCGGA 60.404 52.381 0.00 0.00 0.00 4.55
259 282 1.002366 CGGCTCATTCAGTCTTTCGG 58.998 55.000 0.00 0.00 0.00 4.30
260 283 1.002366 CCGGCTCATTCAGTCTTTCG 58.998 55.000 0.00 0.00 0.00 3.46
261 284 0.729690 GCCGGCTCATTCAGTCTTTC 59.270 55.000 22.15 0.00 0.00 2.62
262 285 0.036732 TGCCGGCTCATTCAGTCTTT 59.963 50.000 29.70 0.00 0.00 2.52
263 286 0.254178 ATGCCGGCTCATTCAGTCTT 59.746 50.000 29.70 0.00 0.00 3.01
264 287 1.123077 TATGCCGGCTCATTCAGTCT 58.877 50.000 29.70 1.76 0.00 3.24
265 288 2.072298 GATATGCCGGCTCATTCAGTC 58.928 52.381 29.70 10.30 0.00 3.51
266 289 1.417517 TGATATGCCGGCTCATTCAGT 59.582 47.619 29.70 4.64 0.00 3.41
267 290 2.174363 TGATATGCCGGCTCATTCAG 57.826 50.000 29.70 0.00 0.00 3.02
268 291 2.303890 AGATGATATGCCGGCTCATTCA 59.696 45.455 29.70 23.32 30.00 2.57
269 292 2.935201 GAGATGATATGCCGGCTCATTC 59.065 50.000 29.70 20.78 30.00 2.67
270 293 2.570752 AGAGATGATATGCCGGCTCATT 59.429 45.455 29.70 17.27 30.00 2.57
271 294 2.186243 AGAGATGATATGCCGGCTCAT 58.814 47.619 29.70 27.00 32.46 2.90
272 295 1.637338 AGAGATGATATGCCGGCTCA 58.363 50.000 29.70 23.34 0.00 4.26
273 296 2.615869 GAAGAGATGATATGCCGGCTC 58.384 52.381 29.70 17.89 0.00 4.70
274 297 1.277557 GGAAGAGATGATATGCCGGCT 59.722 52.381 29.70 15.76 0.00 5.52
275 298 1.731720 GGAAGAGATGATATGCCGGC 58.268 55.000 22.73 22.73 0.00 6.13
276 299 1.546029 TCGGAAGAGATGATATGCCGG 59.454 52.381 0.00 0.00 37.95 6.13
289 312 2.425312 GCTCATTCAGTCTCTCGGAAGA 59.575 50.000 0.00 0.00 34.17 2.87
290 313 2.481104 GGCTCATTCAGTCTCTCGGAAG 60.481 54.545 0.00 0.00 34.17 3.46
291 314 1.478510 GGCTCATTCAGTCTCTCGGAA 59.521 52.381 0.00 0.00 35.05 4.30
292 315 1.107114 GGCTCATTCAGTCTCTCGGA 58.893 55.000 0.00 0.00 0.00 4.55
293 316 0.248825 CGGCTCATTCAGTCTCTCGG 60.249 60.000 0.00 0.00 0.00 4.63
294 317 0.248825 CCGGCTCATTCAGTCTCTCG 60.249 60.000 0.00 0.00 0.00 4.04
295 318 0.529555 GCCGGCTCATTCAGTCTCTC 60.530 60.000 22.15 0.00 0.00 3.20
296 319 1.519719 GCCGGCTCATTCAGTCTCT 59.480 57.895 22.15 0.00 0.00 3.10
297 320 1.880340 CGCCGGCTCATTCAGTCTC 60.880 63.158 26.68 0.00 0.00 3.36
298 321 1.680522 ATCGCCGGCTCATTCAGTCT 61.681 55.000 26.68 0.00 0.00 3.24
299 322 1.218230 GATCGCCGGCTCATTCAGTC 61.218 60.000 26.68 6.67 0.00 3.51
300 323 1.227380 GATCGCCGGCTCATTCAGT 60.227 57.895 26.68 0.37 0.00 3.41
301 324 0.602106 ATGATCGCCGGCTCATTCAG 60.602 55.000 26.68 6.92 0.00 3.02
302 325 0.601046 GATGATCGCCGGCTCATTCA 60.601 55.000 26.57 21.35 32.36 2.57
303 326 0.320247 AGATGATCGCCGGCTCATTC 60.320 55.000 26.57 19.88 32.36 2.67
304 327 0.107456 AAGATGATCGCCGGCTCATT 59.893 50.000 26.57 13.84 32.36 2.57
305 328 0.602106 CAAGATGATCGCCGGCTCAT 60.602 55.000 26.28 26.28 34.86 2.90
306 329 1.227350 CAAGATGATCGCCGGCTCA 60.227 57.895 26.68 22.73 0.00 4.26
307 330 0.943359 CTCAAGATGATCGCCGGCTC 60.943 60.000 26.68 17.18 0.00 4.70
308 331 1.068753 CTCAAGATGATCGCCGGCT 59.931 57.895 26.68 6.32 0.00 5.52
309 332 0.320247 ATCTCAAGATGATCGCCGGC 60.320 55.000 19.07 19.07 32.68 6.13
310 333 2.160822 AATCTCAAGATGATCGCCGG 57.839 50.000 0.00 0.00 34.49 6.13
311 334 4.375405 CGTAAAATCTCAAGATGATCGCCG 60.375 45.833 0.00 0.00 34.49 6.46
312 335 4.745125 TCGTAAAATCTCAAGATGATCGCC 59.255 41.667 0.00 0.00 34.49 5.54
313 336 5.890110 TCGTAAAATCTCAAGATGATCGC 57.110 39.130 0.00 0.00 34.49 4.58
314 337 7.220875 TGACTTCGTAAAATCTCAAGATGATCG 59.779 37.037 0.00 0.00 34.49 3.69
315 338 8.324567 GTGACTTCGTAAAATCTCAAGATGATC 58.675 37.037 0.00 0.00 34.49 2.92
316 339 7.278868 GGTGACTTCGTAAAATCTCAAGATGAT 59.721 37.037 0.00 0.00 34.49 2.45
317 340 6.590292 GGTGACTTCGTAAAATCTCAAGATGA 59.410 38.462 0.00 0.00 34.49 2.92
318 341 6.454318 CGGTGACTTCGTAAAATCTCAAGATG 60.454 42.308 0.00 0.00 34.49 2.90
319 342 5.577164 CGGTGACTTCGTAAAATCTCAAGAT 59.423 40.000 0.00 0.00 36.07 2.40
320 343 4.921515 CGGTGACTTCGTAAAATCTCAAGA 59.078 41.667 0.00 0.00 0.00 3.02
321 344 4.684703 ACGGTGACTTCGTAAAATCTCAAG 59.315 41.667 0.00 0.00 39.22 3.02
322 345 4.624015 ACGGTGACTTCGTAAAATCTCAA 58.376 39.130 0.00 0.00 39.22 3.02
323 346 4.247267 ACGGTGACTTCGTAAAATCTCA 57.753 40.909 0.00 0.00 39.22 3.27
324 347 5.511025 GTCTACGGTGACTTCGTAAAATCTC 59.489 44.000 0.00 0.00 41.62 2.75
325 348 5.048504 TGTCTACGGTGACTTCGTAAAATCT 60.049 40.000 10.55 0.00 41.62 2.40
326 349 5.060200 GTGTCTACGGTGACTTCGTAAAATC 59.940 44.000 10.55 0.00 41.62 2.17
327 350 4.919754 GTGTCTACGGTGACTTCGTAAAAT 59.080 41.667 10.55 0.00 41.62 1.82
328 351 4.290155 GTGTCTACGGTGACTTCGTAAAA 58.710 43.478 10.55 0.00 41.62 1.52
329 352 3.304659 GGTGTCTACGGTGACTTCGTAAA 60.305 47.826 10.55 0.00 41.62 2.01
330 353 2.226437 GGTGTCTACGGTGACTTCGTAA 59.774 50.000 10.55 0.00 41.62 3.18
331 354 1.806542 GGTGTCTACGGTGACTTCGTA 59.193 52.381 10.55 0.00 41.38 3.43
332 355 0.595095 GGTGTCTACGGTGACTTCGT 59.405 55.000 10.55 0.00 43.64 3.85
333 356 0.879765 AGGTGTCTACGGTGACTTCG 59.120 55.000 10.55 0.00 37.79 3.79
334 357 1.135746 CGAGGTGTCTACGGTGACTTC 60.136 57.143 10.55 5.97 37.79 3.01
335 358 0.879765 CGAGGTGTCTACGGTGACTT 59.120 55.000 10.55 0.00 37.79 3.01
336 359 0.250640 ACGAGGTGTCTACGGTGACT 60.251 55.000 10.55 0.00 37.79 3.41
337 360 1.396301 CTACGAGGTGTCTACGGTGAC 59.604 57.143 0.00 3.56 37.47 3.67
338 361 1.002430 ACTACGAGGTGTCTACGGTGA 59.998 52.381 0.00 0.00 0.00 4.02
339 362 1.396301 GACTACGAGGTGTCTACGGTG 59.604 57.143 0.00 0.00 0.00 4.94
340 363 1.731720 GACTACGAGGTGTCTACGGT 58.268 55.000 0.00 0.00 0.00 4.83
341 364 0.649475 CGACTACGAGGTGTCTACGG 59.351 60.000 0.00 0.00 42.66 4.02
342 365 1.633561 TCGACTACGAGGTGTCTACG 58.366 55.000 0.00 0.00 43.81 3.51
353 376 2.438583 GAGACGTTTCCATCGACTACG 58.561 52.381 0.00 0.00 41.26 3.51
354 377 2.422832 AGGAGACGTTTCCATCGACTAC 59.577 50.000 25.51 0.00 39.84 2.73
355 378 2.681848 GAGGAGACGTTTCCATCGACTA 59.318 50.000 25.51 0.00 39.84 2.59
356 379 1.473278 GAGGAGACGTTTCCATCGACT 59.527 52.381 25.51 4.98 39.84 4.18
357 380 1.469423 GGAGGAGACGTTTCCATCGAC 60.469 57.143 25.51 11.46 39.84 4.20
358 381 0.815734 GGAGGAGACGTTTCCATCGA 59.184 55.000 25.51 0.00 39.84 3.59
359 382 0.179108 GGGAGGAGACGTTTCCATCG 60.179 60.000 25.51 0.00 39.84 3.84
360 383 0.902531 TGGGAGGAGACGTTTCCATC 59.097 55.000 25.51 18.39 39.84 3.51
361 384 0.613777 GTGGGAGGAGACGTTTCCAT 59.386 55.000 25.51 11.65 39.84 3.41
362 385 0.471211 AGTGGGAGGAGACGTTTCCA 60.471 55.000 25.51 4.24 39.84 3.53
363 386 1.553706 TAGTGGGAGGAGACGTTTCC 58.446 55.000 17.16 17.16 37.52 3.13
364 387 3.324117 GTTTAGTGGGAGGAGACGTTTC 58.676 50.000 0.00 0.00 0.00 2.78
365 388 2.288640 CGTTTAGTGGGAGGAGACGTTT 60.289 50.000 0.00 0.00 0.00 3.60
366 389 1.271656 CGTTTAGTGGGAGGAGACGTT 59.728 52.381 0.00 0.00 0.00 3.99
367 390 0.886563 CGTTTAGTGGGAGGAGACGT 59.113 55.000 0.00 0.00 0.00 4.34
368 391 0.458025 GCGTTTAGTGGGAGGAGACG 60.458 60.000 0.00 0.00 0.00 4.18
369 392 0.458025 CGCGTTTAGTGGGAGGAGAC 60.458 60.000 0.00 0.00 0.00 3.36
370 393 0.896940 ACGCGTTTAGTGGGAGGAGA 60.897 55.000 5.58 0.00 33.90 3.71
371 394 0.736325 CACGCGTTTAGTGGGAGGAG 60.736 60.000 10.22 0.00 35.27 3.69
372 395 1.290955 CACGCGTTTAGTGGGAGGA 59.709 57.895 10.22 0.00 35.27 3.71
373 396 1.005394 ACACGCGTTTAGTGGGAGG 60.005 57.895 10.22 0.00 43.41 4.30
374 397 0.038526 AGACACGCGTTTAGTGGGAG 60.039 55.000 10.22 0.00 43.41 4.30
375 398 0.390124 AAGACACGCGTTTAGTGGGA 59.610 50.000 10.22 0.00 43.41 4.37
376 399 0.788391 GAAGACACGCGTTTAGTGGG 59.212 55.000 10.22 0.00 43.41 4.61
377 400 0.433492 CGAAGACACGCGTTTAGTGG 59.567 55.000 10.22 0.00 43.41 4.00
378 401 0.433492 CCGAAGACACGCGTTTAGTG 59.567 55.000 10.22 0.00 44.57 2.74
379 402 0.311790 TCCGAAGACACGCGTTTAGT 59.688 50.000 10.22 4.19 0.00 2.24
380 403 1.411394 TTCCGAAGACACGCGTTTAG 58.589 50.000 10.22 0.00 0.00 1.85
381 404 1.850377 TTTCCGAAGACACGCGTTTA 58.150 45.000 10.22 0.00 0.00 2.01
382 405 1.193874 GATTTCCGAAGACACGCGTTT 59.806 47.619 10.22 1.67 0.00 3.60
383 406 0.788391 GATTTCCGAAGACACGCGTT 59.212 50.000 10.22 0.17 0.00 4.84
384 407 1.012486 GGATTTCCGAAGACACGCGT 61.012 55.000 5.58 5.58 0.00 6.01
385 408 0.736325 AGGATTTCCGAAGACACGCG 60.736 55.000 3.53 3.53 42.08 6.01
386 409 0.721718 CAGGATTTCCGAAGACACGC 59.278 55.000 0.00 0.00 42.08 5.34
387 410 2.363788 TCAGGATTTCCGAAGACACG 57.636 50.000 0.00 0.00 42.08 4.49
388 411 5.432885 TTTTTCAGGATTTCCGAAGACAC 57.567 39.130 0.00 0.00 42.08 3.67
389 412 7.753309 TTATTTTTCAGGATTTCCGAAGACA 57.247 32.000 0.00 0.00 42.08 3.41
390 413 7.273598 GCTTTATTTTTCAGGATTTCCGAAGAC 59.726 37.037 0.00 0.00 42.08 3.01
391 414 7.312899 GCTTTATTTTTCAGGATTTCCGAAGA 58.687 34.615 0.00 0.00 42.08 2.87
392 415 6.251376 CGCTTTATTTTTCAGGATTTCCGAAG 59.749 38.462 0.00 0.00 42.08 3.79
393 416 6.072397 TCGCTTTATTTTTCAGGATTTCCGAA 60.072 34.615 0.00 0.00 42.08 4.30
394 417 5.413213 TCGCTTTATTTTTCAGGATTTCCGA 59.587 36.000 0.00 0.00 42.08 4.55
395 418 5.636837 TCGCTTTATTTTTCAGGATTTCCG 58.363 37.500 0.00 0.00 42.08 4.30
396 419 5.516696 GCTCGCTTTATTTTTCAGGATTTCC 59.483 40.000 0.00 0.00 0.00 3.13
397 420 6.092748 TGCTCGCTTTATTTTTCAGGATTTC 58.907 36.000 0.00 0.00 0.00 2.17
398 421 6.024552 TGCTCGCTTTATTTTTCAGGATTT 57.975 33.333 0.00 0.00 0.00 2.17
399 422 5.643379 TGCTCGCTTTATTTTTCAGGATT 57.357 34.783 0.00 0.00 0.00 3.01
400 423 5.357878 TGATGCTCGCTTTATTTTTCAGGAT 59.642 36.000 0.00 0.00 0.00 3.24
401 424 4.699735 TGATGCTCGCTTTATTTTTCAGGA 59.300 37.500 0.00 0.00 0.00 3.86
402 425 4.985413 TGATGCTCGCTTTATTTTTCAGG 58.015 39.130 0.00 0.00 0.00 3.86
403 426 5.872635 TCTGATGCTCGCTTTATTTTTCAG 58.127 37.500 0.00 0.00 0.00 3.02
404 427 5.878332 TCTGATGCTCGCTTTATTTTTCA 57.122 34.783 0.00 0.00 0.00 2.69
405 428 6.317857 ACTTCTGATGCTCGCTTTATTTTTC 58.682 36.000 0.00 0.00 0.00 2.29
406 429 6.259550 ACTTCTGATGCTCGCTTTATTTTT 57.740 33.333 0.00 0.00 0.00 1.94
407 430 5.886960 ACTTCTGATGCTCGCTTTATTTT 57.113 34.783 0.00 0.00 0.00 1.82
408 431 5.412594 TCAACTTCTGATGCTCGCTTTATTT 59.587 36.000 0.00 0.00 0.00 1.40
409 432 4.937620 TCAACTTCTGATGCTCGCTTTATT 59.062 37.500 0.00 0.00 0.00 1.40
410 433 4.507710 TCAACTTCTGATGCTCGCTTTAT 58.492 39.130 0.00 0.00 0.00 1.40
411 434 3.925379 TCAACTTCTGATGCTCGCTTTA 58.075 40.909 0.00 0.00 0.00 1.85
412 435 2.771089 TCAACTTCTGATGCTCGCTTT 58.229 42.857 0.00 0.00 0.00 3.51
413 436 2.462456 TCAACTTCTGATGCTCGCTT 57.538 45.000 0.00 0.00 0.00 4.68
414 437 2.072298 GTTCAACTTCTGATGCTCGCT 58.928 47.619 0.00 0.00 32.78 4.93
415 438 1.129437 GGTTCAACTTCTGATGCTCGC 59.871 52.381 0.00 0.00 32.78 5.03
416 439 1.734465 GGGTTCAACTTCTGATGCTCG 59.266 52.381 0.00 0.00 32.78 5.03
417 440 2.746362 CAGGGTTCAACTTCTGATGCTC 59.254 50.000 5.79 0.00 32.78 4.26
418 441 2.373169 TCAGGGTTCAACTTCTGATGCT 59.627 45.455 9.16 0.00 32.78 3.79
419 442 2.783135 TCAGGGTTCAACTTCTGATGC 58.217 47.619 9.16 0.00 32.78 3.91
421 444 3.960571 CCATCAGGGTTCAACTTCTGAT 58.039 45.455 16.15 16.15 44.79 2.90
422 445 3.423539 CCATCAGGGTTCAACTTCTGA 57.576 47.619 13.71 13.71 40.04 3.27
435 458 0.846015 TTGTATCCCAGCCCATCAGG 59.154 55.000 0.00 0.00 39.47 3.86
436 459 1.492176 AGTTGTATCCCAGCCCATCAG 59.508 52.381 0.00 0.00 0.00 2.90
437 460 1.490490 GAGTTGTATCCCAGCCCATCA 59.510 52.381 0.00 0.00 0.00 3.07
438 461 1.771255 AGAGTTGTATCCCAGCCCATC 59.229 52.381 0.00 0.00 0.00 3.51
439 462 1.898863 AGAGTTGTATCCCAGCCCAT 58.101 50.000 0.00 0.00 0.00 4.00
440 463 1.559682 GAAGAGTTGTATCCCAGCCCA 59.440 52.381 0.00 0.00 0.00 5.36
441 464 1.559682 TGAAGAGTTGTATCCCAGCCC 59.440 52.381 0.00 0.00 0.00 5.19
442 465 2.633488 GTGAAGAGTTGTATCCCAGCC 58.367 52.381 0.00 0.00 0.00 4.85
443 466 2.237392 AGGTGAAGAGTTGTATCCCAGC 59.763 50.000 0.00 0.00 0.00 4.85
444 467 5.420409 GTTAGGTGAAGAGTTGTATCCCAG 58.580 45.833 0.00 0.00 0.00 4.45
445 468 4.224370 GGTTAGGTGAAGAGTTGTATCCCA 59.776 45.833 0.00 0.00 0.00 4.37
446 469 4.224370 TGGTTAGGTGAAGAGTTGTATCCC 59.776 45.833 0.00 0.00 0.00 3.85
447 470 5.416271 TGGTTAGGTGAAGAGTTGTATCC 57.584 43.478 0.00 0.00 0.00 2.59
448 471 7.103641 TGAATGGTTAGGTGAAGAGTTGTATC 58.896 38.462 0.00 0.00 0.00 2.24
449 472 7.016153 TGAATGGTTAGGTGAAGAGTTGTAT 57.984 36.000 0.00 0.00 0.00 2.29
450 473 6.428083 TGAATGGTTAGGTGAAGAGTTGTA 57.572 37.500 0.00 0.00 0.00 2.41
451 474 5.304686 TGAATGGTTAGGTGAAGAGTTGT 57.695 39.130 0.00 0.00 0.00 3.32
452 475 5.765182 AGTTGAATGGTTAGGTGAAGAGTTG 59.235 40.000 0.00 0.00 0.00 3.16
453 476 5.941788 AGTTGAATGGTTAGGTGAAGAGTT 58.058 37.500 0.00 0.00 0.00 3.01
454 477 5.568620 AGTTGAATGGTTAGGTGAAGAGT 57.431 39.130 0.00 0.00 0.00 3.24
455 478 6.464222 TGTAGTTGAATGGTTAGGTGAAGAG 58.536 40.000 0.00 0.00 0.00 2.85
456 479 6.428083 TGTAGTTGAATGGTTAGGTGAAGA 57.572 37.500 0.00 0.00 0.00 2.87
457 480 5.643777 CCTGTAGTTGAATGGTTAGGTGAAG 59.356 44.000 0.00 0.00 0.00 3.02
458 481 5.072600 ACCTGTAGTTGAATGGTTAGGTGAA 59.927 40.000 0.00 0.00 36.06 3.18
459 482 4.595781 ACCTGTAGTTGAATGGTTAGGTGA 59.404 41.667 0.00 0.00 36.06 4.02
460 483 4.906618 ACCTGTAGTTGAATGGTTAGGTG 58.093 43.478 0.00 0.00 36.06 4.00
461 484 5.578157 AACCTGTAGTTGAATGGTTAGGT 57.422 39.130 0.00 0.00 38.99 3.08
473 496 1.140252 ACTGCGAACCAACCTGTAGTT 59.860 47.619 0.00 0.00 40.16 2.24
474 497 0.756903 ACTGCGAACCAACCTGTAGT 59.243 50.000 0.00 0.00 0.00 2.73
475 498 1.798813 GAACTGCGAACCAACCTGTAG 59.201 52.381 0.00 0.00 0.00 2.74
476 499 1.541670 GGAACTGCGAACCAACCTGTA 60.542 52.381 0.00 0.00 0.00 2.74
477 500 0.818040 GGAACTGCGAACCAACCTGT 60.818 55.000 0.00 0.00 0.00 4.00
478 501 0.535102 AGGAACTGCGAACCAACCTG 60.535 55.000 0.00 0.00 37.18 4.00
479 502 0.250338 GAGGAACTGCGAACCAACCT 60.250 55.000 0.00 0.00 41.55 3.50
480 503 1.235281 GGAGGAACTGCGAACCAACC 61.235 60.000 0.00 0.00 41.55 3.77
481 504 2.244946 GGAGGAACTGCGAACCAAC 58.755 57.895 0.00 0.00 41.55 3.77
482 505 4.792087 GGAGGAACTGCGAACCAA 57.208 55.556 0.00 0.00 41.55 3.67
498 521 9.778993 CTGATTGAACACACTAATTTTCATAGG 57.221 33.333 0.00 0.00 0.00 2.57
504 527 8.396272 ACTAGCTGATTGAACACACTAATTTT 57.604 30.769 0.00 0.00 0.00 1.82
506 529 9.672673 AATACTAGCTGATTGAACACACTAATT 57.327 29.630 0.00 0.00 0.00 1.40
507 530 9.319143 GAATACTAGCTGATTGAACACACTAAT 57.681 33.333 0.00 0.00 0.00 1.73
511 534 5.577164 ACGAATACTAGCTGATTGAACACAC 59.423 40.000 0.00 0.00 0.00 3.82
517 540 5.593095 AGTGGTACGAATACTAGCTGATTGA 59.407 40.000 0.00 0.00 0.00 2.57
539 563 0.105593 CCGAGAGCATGCACCATAGT 59.894 55.000 21.98 0.00 0.00 2.12
542 566 1.153289 GTCCGAGAGCATGCACCAT 60.153 57.895 21.98 0.00 0.00 3.55
557 581 1.346722 TCTCCCTCTGAAAAACCGTCC 59.653 52.381 0.00 0.00 0.00 4.79
559 583 2.372172 ACATCTCCCTCTGAAAAACCGT 59.628 45.455 0.00 0.00 0.00 4.83
560 584 3.003480 GACATCTCCCTCTGAAAAACCG 58.997 50.000 0.00 0.00 0.00 4.44
561 585 3.003480 CGACATCTCCCTCTGAAAAACC 58.997 50.000 0.00 0.00 0.00 3.27
562 586 3.926616 TCGACATCTCCCTCTGAAAAAC 58.073 45.455 0.00 0.00 0.00 2.43
576 618 2.194271 CCCTCGCTTTAACTCGACATC 58.806 52.381 0.00 0.00 0.00 3.06
591 633 1.051812 ATCCATAGAGTTGCCCCTCG 58.948 55.000 0.00 0.00 36.56 4.63
606 648 8.999431 GCGAAATTCTTTGTATTATCCTATCCA 58.001 33.333 0.00 0.00 0.00 3.41
613 655 9.173939 CTTGATGGCGAAATTCTTTGTATTATC 57.826 33.333 0.00 0.00 0.00 1.75
631 739 1.425428 GTGCAGTACGCTTGATGGC 59.575 57.895 10.27 0.00 43.06 4.40
632 740 0.391661 AGGTGCAGTACGCTTGATGG 60.392 55.000 10.27 0.00 43.06 3.51
639 1520 2.979813 CAAAATTTCAGGTGCAGTACGC 59.020 45.455 0.00 3.22 42.89 4.42
728 1609 0.609662 ATGGCCAAATGGTGAAGCAC 59.390 50.000 10.96 0.00 37.57 4.40
729 1610 1.350071 AATGGCCAAATGGTGAAGCA 58.650 45.000 10.96 0.00 37.57 3.91
730 1611 2.477845 AAATGGCCAAATGGTGAAGC 57.522 45.000 10.96 0.00 37.57 3.86
731 1612 2.485038 GCAAAATGGCCAAATGGTGAAG 59.515 45.455 10.96 0.00 37.57 3.02
763 1651 2.031044 CTCGTCTCTCGTCTCGGCAG 62.031 65.000 0.00 0.00 40.80 4.85
764 1652 2.047560 TCGTCTCTCGTCTCGGCA 60.048 61.111 0.00 0.00 40.80 5.69
765 1653 2.704616 CTCGTCTCTCGTCTCGGC 59.295 66.667 0.00 0.00 40.80 5.54
766 1654 2.815298 GCCTCGTCTCTCGTCTCGG 61.815 68.421 0.00 0.00 40.80 4.63
767 1655 2.704616 GCCTCGTCTCTCGTCTCG 59.295 66.667 0.00 0.00 40.80 4.04
768 1656 1.360194 TTCGCCTCGTCTCTCGTCTC 61.360 60.000 0.00 0.00 40.80 3.36
769 1657 1.363145 CTTCGCCTCGTCTCTCGTCT 61.363 60.000 0.00 0.00 40.80 4.18
783 1671 1.372128 CAGTTTTGGCTGGCTTCGC 60.372 57.895 2.00 0.00 33.11 4.70
819 1718 1.605753 GTGAAGGGAAGAAAAGGCGT 58.394 50.000 0.00 0.00 0.00 5.68
826 1725 4.517453 CGTTAAATGTGGTGAAGGGAAGAA 59.483 41.667 0.00 0.00 0.00 2.52
828 1727 3.365969 GCGTTAAATGTGGTGAAGGGAAG 60.366 47.826 0.00 0.00 0.00 3.46
925 3613 2.540910 TCTGGGGGAGAGGGAGGT 60.541 66.667 0.00 0.00 0.00 3.85
932 3620 2.039624 GGTGAGCTCTGGGGGAGA 59.960 66.667 16.19 0.00 44.45 3.71
1308 4000 1.261238 GGGAGGAGTGGAGGACTGTG 61.261 65.000 0.00 0.00 33.83 3.66
1376 4075 1.279496 ACTAGCTGCTTCCATGGACA 58.721 50.000 15.91 9.56 0.00 4.02
1385 4084 0.322008 GGCACAGGAACTAGCTGCTT 60.322 55.000 7.79 0.00 38.48 3.91
1387 4086 1.003355 TGGCACAGGAACTAGCTGC 60.003 57.895 0.00 0.00 38.48 5.25
1414 4125 0.245266 TAGATTGCTGCAACGGACGA 59.755 50.000 18.51 3.65 0.00 4.20
1418 4129 2.350522 AGAACTAGATTGCTGCAACGG 58.649 47.619 18.51 10.18 0.00 4.44
1451 4167 1.968017 CTGAGCACCGCAACACCAT 60.968 57.895 0.00 0.00 0.00 3.55
1466 4182 3.059982 CGCCTTGGTCACCTCTGA 58.940 61.111 0.00 0.00 0.00 3.27
1834 4550 1.078356 CAGAGATGCTGCTGCTGGT 60.078 57.895 17.00 2.92 37.90 4.00
1940 4656 3.782656 TTTTCTTCTGGTAGGTCCCAC 57.217 47.619 0.00 0.00 34.77 4.61
1995 4716 1.063174 CTTCGTTCCTATTGCTGCTGC 59.937 52.381 8.89 8.89 40.20 5.25
1996 4717 1.063174 GCTTCGTTCCTATTGCTGCTG 59.937 52.381 0.00 0.00 0.00 4.41
1997 4718 1.065854 AGCTTCGTTCCTATTGCTGCT 60.066 47.619 0.00 0.00 0.00 4.24
2087 4808 5.232463 AGATTGCCAAGTTGCACTTTTATG 58.768 37.500 0.00 0.00 41.88 1.90
2088 4809 5.010922 TGAGATTGCCAAGTTGCACTTTTAT 59.989 36.000 0.00 0.00 41.88 1.40
2089 4810 4.340666 TGAGATTGCCAAGTTGCACTTTTA 59.659 37.500 0.00 0.00 41.88 1.52
2090 4811 3.132646 TGAGATTGCCAAGTTGCACTTTT 59.867 39.130 0.00 0.00 41.88 2.27
2091 4812 2.694628 TGAGATTGCCAAGTTGCACTTT 59.305 40.909 0.00 0.00 41.88 2.66
2092 4813 2.309613 TGAGATTGCCAAGTTGCACTT 58.690 42.857 0.00 0.00 41.88 3.16
2093 4814 1.985473 TGAGATTGCCAAGTTGCACT 58.015 45.000 0.00 0.00 41.88 4.40
2094 4815 2.798976 TTGAGATTGCCAAGTTGCAC 57.201 45.000 0.00 0.00 41.88 4.57
2103 4824 1.250840 AACGGGGCTTTGAGATTGCC 61.251 55.000 0.00 0.00 45.42 4.52
2120 4841 2.609491 GGGAAATTCAGGCGTTCCAAAC 60.609 50.000 4.22 0.00 42.26 2.93
2125 4846 1.654023 CGGGGGAAATTCAGGCGTTC 61.654 60.000 0.00 0.00 0.00 3.95
2144 4873 2.634982 TTGCGAGGTTGCATGAATTC 57.365 45.000 0.00 0.00 45.78 2.17
2150 4879 0.108186 TCGAGATTGCGAGGTTGCAT 60.108 50.000 0.00 0.00 45.78 3.96
2151 4880 0.108186 ATCGAGATTGCGAGGTTGCA 60.108 50.000 0.00 0.00 44.26 4.08
2154 4883 0.176680 AGCATCGAGATTGCGAGGTT 59.823 50.000 3.96 0.00 44.26 3.50
2157 4886 1.563655 GCAGCATCGAGATTGCGAG 59.436 57.895 3.96 2.90 44.26 5.03
2159 4888 1.434622 AAGGCAGCATCGAGATTGCG 61.435 55.000 3.96 1.40 37.43 4.85
2161 4890 1.065102 CCAAAGGCAGCATCGAGATTG 59.935 52.381 0.00 0.00 0.00 2.67
2162 4891 1.340405 ACCAAAGGCAGCATCGAGATT 60.340 47.619 0.00 0.00 0.00 2.40
2163 4892 0.254178 ACCAAAGGCAGCATCGAGAT 59.746 50.000 0.00 0.00 0.00 2.75
2164 4893 0.391661 GACCAAAGGCAGCATCGAGA 60.392 55.000 0.00 0.00 0.00 4.04
2165 4894 1.372087 GGACCAAAGGCAGCATCGAG 61.372 60.000 0.00 0.00 0.00 4.04
2167 4896 1.675310 TGGACCAAAGGCAGCATCG 60.675 57.895 0.00 0.00 0.00 3.84
2168 4897 1.885871 GTGGACCAAAGGCAGCATC 59.114 57.895 0.00 0.00 0.00 3.91
2171 4900 3.365265 CCGTGGACCAAAGGCAGC 61.365 66.667 0.00 0.00 0.00 5.25
2175 4904 1.586028 CAATGCCGTGGACCAAAGG 59.414 57.895 11.85 11.85 0.00 3.11
2176 4905 1.080569 GCAATGCCGTGGACCAAAG 60.081 57.895 0.00 0.00 0.00 2.77
2177 4906 1.395045 TTGCAATGCCGTGGACCAAA 61.395 50.000 1.53 0.00 0.00 3.28
2178 4907 1.804396 CTTGCAATGCCGTGGACCAA 61.804 55.000 1.53 0.00 0.00 3.67
2180 4909 2.268076 ACTTGCAATGCCGTGGACC 61.268 57.895 1.53 0.00 0.00 4.46
2181 4910 1.081242 CACTTGCAATGCCGTGGAC 60.081 57.895 14.36 0.00 0.00 4.02
2183 4912 0.249405 AAACACTTGCAATGCCGTGG 60.249 50.000 22.34 6.21 34.74 4.94
2184 4913 1.569708 AAAACACTTGCAATGCCGTG 58.430 45.000 18.70 18.70 35.90 4.94
2185 4914 2.307934 AAAAACACTTGCAATGCCGT 57.692 40.000 1.53 0.00 0.00 5.68
2203 6175 7.592885 AATATAGTAGGCCGTACTCTCAAAA 57.407 36.000 15.48 1.87 41.42 2.44
2206 6178 8.696043 TTAAAATATAGTAGGCCGTACTCTCA 57.304 34.615 15.48 3.03 41.42 3.27
2233 6205 9.784531 TTCTTACTTGATTGATTTCTGTCTTCT 57.215 29.630 0.00 0.00 0.00 2.85
2234 6206 9.818796 GTTCTTACTTGATTGATTTCTGTCTTC 57.181 33.333 0.00 0.00 0.00 2.87
2236 6208 9.213799 GAGTTCTTACTTGATTGATTTCTGTCT 57.786 33.333 0.00 0.00 33.84 3.41
2237 6209 9.213799 AGAGTTCTTACTTGATTGATTTCTGTC 57.786 33.333 0.00 0.00 33.84 3.51
2242 6214 9.220767 GGTGTAGAGTTCTTACTTGATTGATTT 57.779 33.333 0.00 0.00 33.84 2.17
2243 6215 7.824779 GGGTGTAGAGTTCTTACTTGATTGATT 59.175 37.037 0.00 0.00 33.84 2.57
2244 6216 7.038302 TGGGTGTAGAGTTCTTACTTGATTGAT 60.038 37.037 0.00 0.00 33.84 2.57
2246 6218 6.464222 TGGGTGTAGAGTTCTTACTTGATTG 58.536 40.000 0.00 0.00 33.84 2.67
2247 6219 6.681729 TGGGTGTAGAGTTCTTACTTGATT 57.318 37.500 0.00 0.00 33.84 2.57
2248 6220 6.405953 CGATGGGTGTAGAGTTCTTACTTGAT 60.406 42.308 0.00 0.00 33.84 2.57
2250 6222 5.103000 CGATGGGTGTAGAGTTCTTACTTG 58.897 45.833 0.00 0.00 33.84 3.16
2253 6225 4.421948 CACGATGGGTGTAGAGTTCTTAC 58.578 47.826 0.00 0.00 41.89 2.34
2254 6226 4.713824 CACGATGGGTGTAGAGTTCTTA 57.286 45.455 0.00 0.00 41.89 2.10
2266 6238 3.078837 GGTTGTAATTGTCACGATGGGT 58.921 45.455 0.00 0.00 0.00 4.51
2267 6239 3.078097 TGGTTGTAATTGTCACGATGGG 58.922 45.455 0.00 0.00 0.00 4.00
2268 6240 4.078363 GTGGTTGTAATTGTCACGATGG 57.922 45.455 0.00 0.00 0.00 3.51
2273 6245 2.660900 GCGTCGTGGTTGTAATTGTCAC 60.661 50.000 0.00 0.00 0.00 3.67
2274 6246 1.527736 GCGTCGTGGTTGTAATTGTCA 59.472 47.619 0.00 0.00 0.00 3.58
2275 6247 1.461237 CGCGTCGTGGTTGTAATTGTC 60.461 52.381 0.00 0.00 0.00 3.18
2276 6248 0.509499 CGCGTCGTGGTTGTAATTGT 59.491 50.000 0.00 0.00 0.00 2.71
2277 6249 0.179235 CCGCGTCGTGGTTGTAATTG 60.179 55.000 16.85 0.00 0.00 2.32
2278 6250 1.903783 GCCGCGTCGTGGTTGTAATT 61.904 55.000 24.86 0.00 35.34 1.40
2281 6253 3.576932 ATGCCGCGTCGTGGTTGTA 62.577 57.895 24.86 10.52 35.34 2.41
2282 6254 4.980805 ATGCCGCGTCGTGGTTGT 62.981 61.111 24.86 9.45 35.34 3.32
2283 6255 3.722295 AATGCCGCGTCGTGGTTG 61.722 61.111 24.86 1.45 35.34 3.77
2284 6256 3.722295 CAATGCCGCGTCGTGGTT 61.722 61.111 24.86 10.52 35.34 3.67
2287 6259 4.382114 TTGCAATGCCGCGTCGTG 62.382 61.111 4.92 0.00 33.35 4.35
2288 6260 4.088762 CTTGCAATGCCGCGTCGT 62.089 61.111 4.92 0.00 33.35 4.34
2290 6262 0.939106 AAAACTTGCAATGCCGCGTC 60.939 50.000 4.92 0.00 33.35 5.19
2292 6264 0.707822 GTAAAACTTGCAATGCCGCG 59.292 50.000 1.53 0.00 33.35 6.46
2308 6334 3.002791 CGCTTCCTTTCTGCTCATGTAA 58.997 45.455 0.00 0.00 0.00 2.41
2318 6344 6.183360 GCATTTTATCTGTACGCTTCCTTTCT 60.183 38.462 0.00 0.00 0.00 2.52
2350 6387 1.134487 CGTGCCGTGCATGGTAAAG 59.866 57.895 25.67 14.92 41.91 1.85
2385 6422 1.745087 CCGAAACACATGGGAATCTGG 59.255 52.381 0.00 2.01 0.00 3.86
2392 6429 1.135315 CAGATTGCCGAAACACATGGG 60.135 52.381 0.00 0.00 0.00 4.00
2450 6487 3.534554 TGATCAATGTAGCATTGTCGCT 58.465 40.909 17.83 0.00 46.26 4.93
2462 6499 4.256110 TCGATCTTGCAGTTGATCAATGT 58.744 39.130 12.12 0.00 39.06 2.71
2474 6511 0.972471 TCTGGAGCCTCGATCTTGCA 60.972 55.000 0.00 0.00 0.00 4.08
2507 6545 5.466393 CGCAACCTTCCTGAAAATTCAAAAT 59.534 36.000 0.00 0.00 36.64 1.82
2526 6564 2.633657 CACCTGACACTGCGCAAC 59.366 61.111 13.05 4.02 0.00 4.17
2532 6570 4.704833 CCCCGGCACCTGACACTG 62.705 72.222 0.00 0.00 0.00 3.66
2549 6587 4.776647 GAAACGCATGTGCCCGGC 62.777 66.667 6.08 1.04 37.91 6.13
2550 6588 4.114997 GGAAACGCATGTGCCCGG 62.115 66.667 6.08 0.00 37.91 5.73
2551 6589 1.372838 TATGGAAACGCATGTGCCCG 61.373 55.000 6.08 0.00 37.91 6.13
2552 6590 1.032014 ATATGGAAACGCATGTGCCC 58.968 50.000 6.08 6.10 37.91 5.36
2653 6703 2.159099 TCACTGGCCGAGCTTAGTTATG 60.159 50.000 0.00 0.00 0.00 1.90
2658 6708 0.459237 CTGTCACTGGCCGAGCTTAG 60.459 60.000 0.00 0.00 0.00 2.18
2659 6709 1.185618 ACTGTCACTGGCCGAGCTTA 61.186 55.000 0.00 0.00 0.00 3.09
2660 6710 2.345244 CTGTCACTGGCCGAGCTT 59.655 61.111 0.00 0.00 0.00 3.74
2661 6711 2.919856 ACTGTCACTGGCCGAGCT 60.920 61.111 0.00 0.00 0.00 4.09
2662 6712 2.433318 GACTGTCACTGGCCGAGC 60.433 66.667 2.24 0.00 0.00 5.03
2663 6713 2.126307 CGACTGTCACTGGCCGAG 60.126 66.667 8.73 0.00 0.00 4.63
2664 6714 2.910479 ACGACTGTCACTGGCCGA 60.910 61.111 8.73 0.00 0.00 5.54
2665 6715 2.430921 GACGACTGTCACTGGCCG 60.431 66.667 8.73 0.00 44.82 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.