Multiple sequence alignment - TraesCS5D01G204400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G204400 chr5D 100.000 4544 0 0 1 4544 309682651 309687194 0.000000e+00 8392
1 TraesCS5D01G204400 chr5D 93.248 311 19 2 4176 4485 351152808 351153117 1.490000e-124 457
2 TraesCS5D01G204400 chr5A 96.697 3996 97 15 1 3991 402965024 402968989 0.000000e+00 6615
3 TraesCS5D01G204400 chr5A 91.615 322 24 3 4179 4498 549204643 549204323 4.170000e-120 442
4 TraesCS5D01G204400 chr5B 95.183 3799 151 17 356 4148 354984703 354988475 0.000000e+00 5973
5 TraesCS5D01G204400 chr5B 90.301 299 22 4 1 298 354984393 354984685 7.130000e-103 385
6 TraesCS5D01G204400 chr1A 93.354 316 19 2 4177 4491 540722865 540723179 2.480000e-127 466
7 TraesCS5D01G204400 chr6D 93.831 308 17 2 4179 4485 28048594 28048900 3.200000e-126 462
8 TraesCS5D01G204400 chr1D 93.204 309 19 2 4179 4486 103031927 103032234 1.930000e-123 453
9 TraesCS5D01G204400 chr2D 92.926 311 20 2 4177 4485 213696993 213697303 6.930000e-123 451
10 TraesCS5D01G204400 chr7D 92.903 310 20 2 4177 4485 539381771 539382079 2.490000e-122 449
11 TraesCS5D01G204400 chr4D 93.182 308 18 3 4179 4485 414346541 414346236 2.490000e-122 449
12 TraesCS5D01G204400 chr6A 92.857 308 20 2 4179 4485 588602429 588602123 3.230000e-121 446


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G204400 chr5D 309682651 309687194 4543 False 8392 8392 100.000 1 4544 1 chr5D.!!$F1 4543
1 TraesCS5D01G204400 chr5A 402965024 402968989 3965 False 6615 6615 96.697 1 3991 1 chr5A.!!$F1 3990
2 TraesCS5D01G204400 chr5B 354984393 354988475 4082 False 3179 5973 92.742 1 4148 2 chr5B.!!$F1 4147

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
761 769 0.741221 GCTCTCGATTTCCGCAACCT 60.741 55.000 0.00 0.0 38.37 3.50 F
1323 1334 1.096967 GTGTTGGGTTTTCGGTCCGT 61.097 55.000 11.88 0.0 0.00 4.69 F
2225 2236 2.069273 CGCTGTTAGGTTTGAGACAGG 58.931 52.381 4.73 0.0 39.80 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1801 1812 0.176680 CAACCGTCTCTGGAGGGATG 59.823 60.0 11.02 6.25 46.96 3.51 R
2829 2840 0.251787 AATCCGCCTGGGCTTCTTTT 60.252 50.0 10.04 0.00 39.32 2.27 R
3916 3929 0.304705 GCACAACTGTCACTTCCACG 59.695 55.0 0.00 0.00 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
272 275 8.996271 CAGATAGTTTGCTGCAATAGAATATGA 58.004 33.333 16.77 0.00 0.00 2.15
279 282 7.912056 TGCTGCAATAGAATATGATTCTACC 57.088 36.000 10.36 4.54 34.25 3.18
552 560 4.213482 AGGTAGTTTGCTAGTTTGCTTTCG 59.787 41.667 0.00 0.00 0.00 3.46
575 583 0.895530 TTCCTGCTTCCGTAGTCTGG 59.104 55.000 0.00 0.00 0.00 3.86
761 769 0.741221 GCTCTCGATTTCCGCAACCT 60.741 55.000 0.00 0.00 38.37 3.50
905 913 2.763039 TGGATTGGGCATCAGAGAGTA 58.237 47.619 0.00 0.00 32.79 2.59
915 926 3.188492 CATCAGAGAGTAGCAGCTGTTG 58.812 50.000 16.64 0.00 0.00 3.33
916 927 2.242926 TCAGAGAGTAGCAGCTGTTGT 58.757 47.619 16.64 0.76 0.00 3.32
917 928 2.630098 TCAGAGAGTAGCAGCTGTTGTT 59.370 45.455 16.64 1.68 0.00 2.83
1182 1193 4.742201 CCGGCGGTGGTCTCACAG 62.742 72.222 19.97 0.00 45.32 3.66
1239 1250 3.334054 GACCCCTGCCTTGAGCCT 61.334 66.667 0.00 0.00 42.71 4.58
1323 1334 1.096967 GTGTTGGGTTTTCGGTCCGT 61.097 55.000 11.88 0.00 0.00 4.69
1635 1646 4.739793 ACATGGAGTTTGAATCCCTTGAA 58.260 39.130 0.00 0.00 35.86 2.69
1801 1812 4.142138 ACAATGGAGACGATACCAAGAGAC 60.142 45.833 0.00 0.00 39.69 3.36
1828 1839 2.236146 TCCAGAGACGGTTGTAATGCAT 59.764 45.455 0.00 0.00 0.00 3.96
2225 2236 2.069273 CGCTGTTAGGTTTGAGACAGG 58.931 52.381 4.73 0.00 39.80 4.00
2244 2255 2.912956 AGGATACAGGAGCAACAAGGAA 59.087 45.455 0.00 0.00 41.41 3.36
2397 2408 2.091885 TGTGAGGCCTCCTGTTTCTTTT 60.092 45.455 29.95 0.00 31.76 2.27
2475 2486 9.113838 GACACCTGTCATATATTCTGTGAAAAT 57.886 33.333 0.31 0.00 44.18 1.82
2553 2564 9.118300 GACCATTTCATAACTGATCTGAGAAAT 57.882 33.333 6.60 11.90 35.35 2.17
2614 2625 3.614092 TCTTGGGAATCAGTTCTCATGC 58.386 45.455 0.00 0.00 44.05 4.06
2909 2920 0.595095 CCAGTGGAGAAACAAGCAGC 59.405 55.000 1.68 0.00 0.00 5.25
2958 2969 6.985117 TGATATATTTCAGGAGCAATTTGCC 58.015 36.000 17.51 9.18 46.52 4.52
2997 3008 0.881118 CAGAGAGGCTCGAGGATAGC 59.119 60.000 15.58 0.00 39.33 2.97
3036 3047 3.070734 GCCTGACAGTAGATGATGGTGAT 59.929 47.826 0.93 0.00 0.00 3.06
3216 3227 3.740832 GGACAAAGCATGCAAAAAGTACC 59.259 43.478 21.98 8.70 0.00 3.34
3301 3312 6.073327 ACAATGATCTTTGCTATGATGCAG 57.927 37.500 18.52 0.00 44.27 4.41
3333 3344 0.329596 AAGAGGGCTCAACATCCACC 59.670 55.000 0.00 0.00 0.00 4.61
3519 3530 3.264947 GCCAGCATTCAAAAATTCCCTC 58.735 45.455 0.00 0.00 0.00 4.30
3520 3531 3.306919 GCCAGCATTCAAAAATTCCCTCA 60.307 43.478 0.00 0.00 0.00 3.86
3645 3656 1.185618 TCTCTTACGCTGTGGCTGGT 61.186 55.000 0.00 0.00 36.09 4.00
3646 3657 0.320771 CTCTTACGCTGTGGCTGGTT 60.321 55.000 0.00 0.00 36.09 3.67
3662 3673 1.162698 GGTTACGGCTTTTCCCTGTC 58.837 55.000 0.00 0.00 0.00 3.51
3663 3674 1.543871 GGTTACGGCTTTTCCCTGTCA 60.544 52.381 0.00 0.00 0.00 3.58
3664 3675 1.804748 GTTACGGCTTTTCCCTGTCAG 59.195 52.381 0.00 0.00 0.00 3.51
3665 3676 0.321298 TACGGCTTTTCCCTGTCAGC 60.321 55.000 0.00 0.00 0.00 4.26
3666 3677 2.680913 CGGCTTTTCCCTGTCAGCG 61.681 63.158 0.00 0.00 32.68 5.18
3667 3678 2.563427 GCTTTTCCCTGTCAGCGC 59.437 61.111 0.00 0.00 0.00 5.92
3668 3679 2.260869 GCTTTTCCCTGTCAGCGCA 61.261 57.895 11.47 0.00 0.00 6.09
3713 3724 8.058915 GCTAATGAATCGTTTGAGACATTACTC 58.941 37.037 1.01 0.00 36.21 2.59
3721 3732 8.378172 TCGTTTGAGACATTACTCTTCAAAAT 57.622 30.769 0.00 0.00 37.73 1.82
3837 3849 3.336138 TGTACCATTGCGTGACCAATA 57.664 42.857 0.00 0.00 33.86 1.90
3901 3914 9.581099 ACTAAAAGACTGTTTTAAATTGTGGTG 57.419 29.630 0.00 0.00 0.00 4.17
3908 3921 5.178797 TGTTTTAAATTGTGGTGGTTGTGG 58.821 37.500 0.00 0.00 0.00 4.17
3910 3923 0.467804 AAATTGTGGTGGTTGTGGCC 59.532 50.000 0.00 0.00 0.00 5.36
3916 3929 0.897863 TGGTGGTTGTGGCCTTATGC 60.898 55.000 3.32 0.00 40.16 3.14
4001 4015 5.173312 CACATGTACTGCTTAGTATACGCAC 59.827 44.000 0.00 0.00 41.19 5.34
4021 4035 5.207768 GCACTTGTATGTTTGAGTTCTGTG 58.792 41.667 0.00 0.00 0.00 3.66
4027 4041 5.466728 TGTATGTTTGAGTTCTGTGCTTCTC 59.533 40.000 0.00 0.00 0.00 2.87
4071 4085 5.104982 TGCAGTATGTTCTCATGGACATGTA 60.105 40.000 11.66 0.02 38.07 2.29
4075 4089 7.170489 CAGTATGTTCTCATGGACATGTATGTC 59.830 40.741 14.98 14.98 43.63 3.06
4077 4091 6.040391 TATGTTCTCATGGACATGTATGTCGA 59.960 38.462 16.34 13.87 46.81 4.20
4090 4104 8.958119 ACATGTATGTCGAACATTTAGGTATT 57.042 30.769 0.00 0.00 39.88 1.89
4141 4156 5.578727 CGCAAGTTAATATGATAGGAGCCTC 59.421 44.000 0.00 0.00 0.00 4.70
4148 4163 8.463607 GTTAATATGATAGGAGCCTCTCACTAC 58.536 40.741 6.74 0.00 33.13 2.73
4149 4164 3.953542 TGATAGGAGCCTCTCACTACA 57.046 47.619 0.89 0.00 31.08 2.74
4150 4165 4.461450 TGATAGGAGCCTCTCACTACAT 57.539 45.455 0.89 0.00 31.08 2.29
4151 4166 4.809193 TGATAGGAGCCTCTCACTACATT 58.191 43.478 0.89 0.00 31.08 2.71
4152 4167 5.211973 TGATAGGAGCCTCTCACTACATTT 58.788 41.667 0.89 0.00 31.08 2.32
4153 4168 5.663106 TGATAGGAGCCTCTCACTACATTTT 59.337 40.000 0.89 0.00 31.08 1.82
4154 4169 4.917906 AGGAGCCTCTCACTACATTTTT 57.082 40.909 0.00 0.00 31.08 1.94
4180 4195 9.595823 TTTTACTATGGATTCTCGTCTTTTAGG 57.404 33.333 0.00 0.00 0.00 2.69
4181 4196 5.602628 ACTATGGATTCTCGTCTTTTAGGC 58.397 41.667 0.00 0.00 0.00 3.93
4182 4197 3.261981 TGGATTCTCGTCTTTTAGGCC 57.738 47.619 0.00 0.00 0.00 5.19
4183 4198 2.838202 TGGATTCTCGTCTTTTAGGCCT 59.162 45.455 11.78 11.78 0.00 5.19
4184 4199 3.263425 TGGATTCTCGTCTTTTAGGCCTT 59.737 43.478 12.58 0.00 0.00 4.35
4185 4200 3.872182 GGATTCTCGTCTTTTAGGCCTTC 59.128 47.826 12.58 0.00 0.00 3.46
4186 4201 4.383226 GGATTCTCGTCTTTTAGGCCTTCT 60.383 45.833 12.58 0.00 0.00 2.85
4187 4202 4.618920 TTCTCGTCTTTTAGGCCTTCTT 57.381 40.909 12.58 0.00 0.00 2.52
4188 4203 4.618920 TCTCGTCTTTTAGGCCTTCTTT 57.381 40.909 12.58 0.00 0.00 2.52
4189 4204 4.315803 TCTCGTCTTTTAGGCCTTCTTTG 58.684 43.478 12.58 0.00 0.00 2.77
4190 4205 3.408634 TCGTCTTTTAGGCCTTCTTTGG 58.591 45.455 12.58 0.00 0.00 3.28
4191 4206 3.146847 CGTCTTTTAGGCCTTCTTTGGT 58.853 45.455 12.58 0.00 0.00 3.67
4192 4207 3.568430 CGTCTTTTAGGCCTTCTTTGGTT 59.432 43.478 12.58 0.00 0.00 3.67
4193 4208 4.037565 CGTCTTTTAGGCCTTCTTTGGTTT 59.962 41.667 12.58 0.00 0.00 3.27
4194 4209 5.239963 CGTCTTTTAGGCCTTCTTTGGTTTA 59.760 40.000 12.58 0.00 0.00 2.01
4195 4210 6.072119 CGTCTTTTAGGCCTTCTTTGGTTTAT 60.072 38.462 12.58 0.00 0.00 1.40
4196 4211 7.120138 CGTCTTTTAGGCCTTCTTTGGTTTATA 59.880 37.037 12.58 0.00 0.00 0.98
4197 4212 8.459635 GTCTTTTAGGCCTTCTTTGGTTTATAG 58.540 37.037 12.58 0.00 0.00 1.31
4198 4213 7.614192 TCTTTTAGGCCTTCTTTGGTTTATAGG 59.386 37.037 12.58 0.00 0.00 2.57
4199 4214 6.645884 TTAGGCCTTCTTTGGTTTATAGGA 57.354 37.500 12.58 0.00 0.00 2.94
4200 4215 5.734031 AGGCCTTCTTTGGTTTATAGGAT 57.266 39.130 0.00 0.00 0.00 3.24
4201 4216 6.841781 AGGCCTTCTTTGGTTTATAGGATA 57.158 37.500 0.00 0.00 0.00 2.59
4202 4217 6.842676 AGGCCTTCTTTGGTTTATAGGATAG 58.157 40.000 0.00 0.00 0.00 2.08
4203 4218 6.004574 GGCCTTCTTTGGTTTATAGGATAGG 58.995 44.000 0.00 0.00 0.00 2.57
4204 4219 6.183361 GGCCTTCTTTGGTTTATAGGATAGGA 60.183 42.308 0.00 0.00 0.00 2.94
4205 4220 7.287810 GCCTTCTTTGGTTTATAGGATAGGAA 58.712 38.462 0.00 0.00 0.00 3.36
4206 4221 7.778382 GCCTTCTTTGGTTTATAGGATAGGAAA 59.222 37.037 0.00 0.00 0.00 3.13
4207 4222 9.695155 CCTTCTTTGGTTTATAGGATAGGAAAA 57.305 33.333 0.00 0.00 0.00 2.29
4221 4236 8.814448 AGGATAGGAAAATTGTAGGAATAGGA 57.186 34.615 0.00 0.00 0.00 2.94
4222 4237 9.237706 AGGATAGGAAAATTGTAGGAATAGGAA 57.762 33.333 0.00 0.00 0.00 3.36
4223 4238 9.862149 GGATAGGAAAATTGTAGGAATAGGAAA 57.138 33.333 0.00 0.00 0.00 3.13
4226 4241 8.809468 AGGAAAATTGTAGGAATAGGAAAGTC 57.191 34.615 0.00 0.00 0.00 3.01
4227 4242 8.390921 AGGAAAATTGTAGGAATAGGAAAGTCA 58.609 33.333 0.00 0.00 0.00 3.41
4228 4243 9.190317 GGAAAATTGTAGGAATAGGAAAGTCAT 57.810 33.333 0.00 0.00 0.00 3.06
4231 4246 9.853177 AAATTGTAGGAATAGGAAAGTCATAGG 57.147 33.333 0.00 0.00 0.00 2.57
4232 4247 8.798975 ATTGTAGGAATAGGAAAGTCATAGGA 57.201 34.615 0.00 0.00 0.00 2.94
4233 4248 8.618240 TTGTAGGAATAGGAAAGTCATAGGAA 57.382 34.615 0.00 0.00 0.00 3.36
4234 4249 8.618240 TGTAGGAATAGGAAAGTCATAGGAAA 57.382 34.615 0.00 0.00 0.00 3.13
4235 4250 9.225682 TGTAGGAATAGGAAAGTCATAGGAAAT 57.774 33.333 0.00 0.00 0.00 2.17
4236 4251 9.495572 GTAGGAATAGGAAAGTCATAGGAAATG 57.504 37.037 0.00 0.00 0.00 2.32
4237 4252 8.337118 AGGAATAGGAAAGTCATAGGAAATGA 57.663 34.615 0.00 0.00 0.00 2.57
4238 4253 8.435982 AGGAATAGGAAAGTCATAGGAAATGAG 58.564 37.037 0.00 0.00 0.00 2.90
4239 4254 7.663493 GGAATAGGAAAGTCATAGGAAATGAGG 59.337 40.741 0.00 0.00 0.00 3.86
4240 4255 4.786425 AGGAAAGTCATAGGAAATGAGGC 58.214 43.478 0.00 0.00 0.00 4.70
4241 4256 3.561725 GGAAAGTCATAGGAAATGAGGCG 59.438 47.826 0.00 0.00 0.00 5.52
4242 4257 4.442706 GAAAGTCATAGGAAATGAGGCGA 58.557 43.478 0.00 0.00 0.00 5.54
4243 4258 3.460857 AGTCATAGGAAATGAGGCGAC 57.539 47.619 0.00 0.00 0.00 5.19
4244 4259 2.766263 AGTCATAGGAAATGAGGCGACA 59.234 45.455 0.00 0.00 0.00 4.35
4245 4260 3.389329 AGTCATAGGAAATGAGGCGACAT 59.611 43.478 0.00 0.00 0.00 3.06
4246 4261 3.496130 GTCATAGGAAATGAGGCGACATG 59.504 47.826 0.00 0.00 0.00 3.21
4247 4262 3.134623 TCATAGGAAATGAGGCGACATGT 59.865 43.478 0.00 0.00 0.00 3.21
4248 4263 4.343814 TCATAGGAAATGAGGCGACATGTA 59.656 41.667 0.00 0.00 0.00 2.29
4249 4264 3.845781 AGGAAATGAGGCGACATGTAT 57.154 42.857 0.00 0.00 0.00 2.29
4250 4265 3.733337 AGGAAATGAGGCGACATGTATC 58.267 45.455 0.00 0.00 0.00 2.24
4251 4266 3.389329 AGGAAATGAGGCGACATGTATCT 59.611 43.478 0.00 0.00 0.00 1.98
4252 4267 3.743396 GGAAATGAGGCGACATGTATCTC 59.257 47.826 0.00 6.96 0.00 2.75
4253 4268 4.371786 GAAATGAGGCGACATGTATCTCA 58.628 43.478 20.33 20.33 38.59 3.27
4254 4269 4.406648 AATGAGGCGACATGTATCTCAA 57.593 40.909 21.30 10.77 37.89 3.02
4255 4270 3.885724 TGAGGCGACATGTATCTCAAA 57.114 42.857 17.52 2.33 32.36 2.69
4256 4271 4.406648 TGAGGCGACATGTATCTCAAAT 57.593 40.909 17.52 0.00 32.36 2.32
4257 4272 4.371786 TGAGGCGACATGTATCTCAAATC 58.628 43.478 17.52 3.31 32.36 2.17
4258 4273 3.733337 AGGCGACATGTATCTCAAATCC 58.267 45.455 0.00 0.00 0.00 3.01
4259 4274 3.389329 AGGCGACATGTATCTCAAATCCT 59.611 43.478 0.00 0.00 0.00 3.24
4260 4275 4.588951 AGGCGACATGTATCTCAAATCCTA 59.411 41.667 0.00 0.00 0.00 2.94
4261 4276 5.247110 AGGCGACATGTATCTCAAATCCTAT 59.753 40.000 0.00 0.00 0.00 2.57
4262 4277 5.349817 GGCGACATGTATCTCAAATCCTATG 59.650 44.000 0.00 0.00 0.00 2.23
4263 4278 6.159293 GCGACATGTATCTCAAATCCTATGA 58.841 40.000 0.00 0.00 0.00 2.15
4264 4279 6.309980 GCGACATGTATCTCAAATCCTATGAG 59.690 42.308 0.00 0.00 44.53 2.90
4265 4280 7.374272 CGACATGTATCTCAAATCCTATGAGT 58.626 38.462 0.00 0.00 43.77 3.41
4266 4281 8.515414 CGACATGTATCTCAAATCCTATGAGTA 58.485 37.037 0.00 0.00 43.77 2.59
4267 4282 9.853555 GACATGTATCTCAAATCCTATGAGTAG 57.146 37.037 0.00 0.00 43.77 2.57
4283 4298 8.893563 CTATGAGTAGGAATAGGAAAGGAGAT 57.106 38.462 0.00 0.00 0.00 2.75
4284 4299 6.985653 TGAGTAGGAATAGGAAAGGAGATG 57.014 41.667 0.00 0.00 0.00 2.90
4285 4300 5.305644 TGAGTAGGAATAGGAAAGGAGATGC 59.694 44.000 0.00 0.00 0.00 3.91
4286 4301 4.595350 AGTAGGAATAGGAAAGGAGATGCC 59.405 45.833 0.00 0.00 0.00 4.40
4287 4302 2.713708 AGGAATAGGAAAGGAGATGCCC 59.286 50.000 0.00 0.00 37.37 5.36
4288 4303 2.713708 GGAATAGGAAAGGAGATGCCCT 59.286 50.000 0.00 0.00 38.42 5.19
4296 4311 3.744940 AAGGAGATGCCCTTTGATTCA 57.255 42.857 0.00 0.00 43.68 2.57
4297 4312 3.010200 AGGAGATGCCCTTTGATTCAC 57.990 47.619 0.00 0.00 37.37 3.18
4298 4313 2.309755 AGGAGATGCCCTTTGATTCACA 59.690 45.455 0.00 0.00 37.37 3.58
4299 4314 3.053095 AGGAGATGCCCTTTGATTCACAT 60.053 43.478 0.00 0.00 37.37 3.21
4300 4315 3.317430 GGAGATGCCCTTTGATTCACATC 59.683 47.826 6.23 6.23 35.31 3.06
4301 4316 3.949754 GAGATGCCCTTTGATTCACATCA 59.050 43.478 13.54 0.00 37.67 3.07
4302 4317 4.543689 AGATGCCCTTTGATTCACATCAT 58.456 39.130 13.54 2.83 39.28 2.45
4303 4318 5.698104 AGATGCCCTTTGATTCACATCATA 58.302 37.500 13.54 0.00 39.28 2.15
4304 4319 5.768662 AGATGCCCTTTGATTCACATCATAG 59.231 40.000 13.54 1.71 39.28 2.23
4305 4320 5.114764 TGCCCTTTGATTCACATCATAGA 57.885 39.130 4.73 0.00 39.59 1.98
4306 4321 5.698104 TGCCCTTTGATTCACATCATAGAT 58.302 37.500 4.73 0.00 39.59 1.98
4307 4322 6.131264 TGCCCTTTGATTCACATCATAGATT 58.869 36.000 4.73 0.00 39.59 2.40
4308 4323 6.608405 TGCCCTTTGATTCACATCATAGATTT 59.392 34.615 4.73 0.00 39.59 2.17
4309 4324 7.124599 TGCCCTTTGATTCACATCATAGATTTT 59.875 33.333 4.73 0.00 39.59 1.82
4310 4325 7.983484 GCCCTTTGATTCACATCATAGATTTTT 59.017 33.333 4.73 0.00 39.59 1.94
4327 4342 3.695830 TTTTTCCATCGAGTGTAGGCT 57.304 42.857 0.00 0.00 0.00 4.58
4328 4343 4.811969 TTTTTCCATCGAGTGTAGGCTA 57.188 40.909 0.00 0.00 0.00 3.93
4329 4344 4.811969 TTTTCCATCGAGTGTAGGCTAA 57.188 40.909 0.00 0.00 0.00 3.09
4330 4345 5.353394 TTTTCCATCGAGTGTAGGCTAAT 57.647 39.130 0.00 0.00 0.00 1.73
4331 4346 4.322080 TTCCATCGAGTGTAGGCTAATG 57.678 45.455 0.00 0.00 0.00 1.90
4332 4347 3.296854 TCCATCGAGTGTAGGCTAATGT 58.703 45.455 0.00 0.00 0.00 2.71
4333 4348 3.704566 TCCATCGAGTGTAGGCTAATGTT 59.295 43.478 0.00 0.00 0.00 2.71
4334 4349 4.161565 TCCATCGAGTGTAGGCTAATGTTT 59.838 41.667 0.00 0.00 0.00 2.83
4335 4350 5.361571 TCCATCGAGTGTAGGCTAATGTTTA 59.638 40.000 0.00 0.00 0.00 2.01
4336 4351 6.041637 TCCATCGAGTGTAGGCTAATGTTTAT 59.958 38.462 0.00 0.00 0.00 1.40
4337 4352 6.706270 CCATCGAGTGTAGGCTAATGTTTATT 59.294 38.462 0.00 0.00 0.00 1.40
4338 4353 7.226720 CCATCGAGTGTAGGCTAATGTTTATTT 59.773 37.037 0.00 0.00 0.00 1.40
4339 4354 8.612619 CATCGAGTGTAGGCTAATGTTTATTTT 58.387 33.333 0.00 0.00 0.00 1.82
4340 4355 8.193250 TCGAGTGTAGGCTAATGTTTATTTTC 57.807 34.615 0.00 0.00 0.00 2.29
4341 4356 7.279313 TCGAGTGTAGGCTAATGTTTATTTTCC 59.721 37.037 0.00 0.00 0.00 3.13
4342 4357 7.280205 CGAGTGTAGGCTAATGTTTATTTTCCT 59.720 37.037 0.00 0.00 33.86 3.36
4343 4358 9.609346 GAGTGTAGGCTAATGTTTATTTTCCTA 57.391 33.333 0.00 0.00 32.55 2.94
4346 4361 9.349713 TGTAGGCTAATGTTTATTTTCCTATGG 57.650 33.333 0.00 0.00 34.50 2.74
4347 4362 9.569122 GTAGGCTAATGTTTATTTTCCTATGGA 57.431 33.333 0.00 0.00 34.50 3.41
4349 4364 9.660544 AGGCTAATGTTTATTTTCCTATGGAAT 57.339 29.630 0.00 0.00 41.71 3.01
4350 4365 9.696917 GGCTAATGTTTATTTTCCTATGGAATG 57.303 33.333 0.00 0.00 41.71 2.67
4356 4371 8.748412 TGTTTATTTTCCTATGGAATGTGAAGG 58.252 33.333 0.00 0.00 41.71 3.46
4357 4372 8.966868 GTTTATTTTCCTATGGAATGTGAAGGA 58.033 33.333 0.00 0.00 41.71 3.36
4358 4373 9.713684 TTTATTTTCCTATGGAATGTGAAGGAT 57.286 29.630 0.00 0.00 41.71 3.24
4360 4375 8.930846 ATTTTCCTATGGAATGTGAAGGATAG 57.069 34.615 0.00 0.00 41.71 2.08
4361 4376 6.439636 TTCCTATGGAATGTGAAGGATAGG 57.560 41.667 0.00 0.00 36.71 2.57
4362 4377 5.726560 TCCTATGGAATGTGAAGGATAGGA 58.273 41.667 0.00 0.00 39.29 2.94
4363 4378 6.150332 TCCTATGGAATGTGAAGGATAGGAA 58.850 40.000 0.00 0.00 38.86 3.36
4364 4379 6.270927 TCCTATGGAATGTGAAGGATAGGAAG 59.729 42.308 0.00 0.00 38.86 3.46
4365 4380 6.270927 CCTATGGAATGTGAAGGATAGGAAGA 59.729 42.308 0.00 0.00 36.16 2.87
4366 4381 6.581388 ATGGAATGTGAAGGATAGGAAGAA 57.419 37.500 0.00 0.00 0.00 2.52
4367 4382 6.581388 TGGAATGTGAAGGATAGGAAGAAT 57.419 37.500 0.00 0.00 0.00 2.40
4368 4383 6.973642 TGGAATGTGAAGGATAGGAAGAATT 58.026 36.000 0.00 0.00 0.00 2.17
4369 4384 7.056635 TGGAATGTGAAGGATAGGAAGAATTC 58.943 38.462 0.00 0.00 46.67 2.17
4389 4404 8.610369 AGAATTCCTCCATAGAAATAGGATTCC 58.390 37.037 0.65 0.00 37.94 3.01
4390 4405 7.895144 ATTCCTCCATAGAAATAGGATTCCA 57.105 36.000 5.29 0.00 37.94 3.53
4391 4406 7.895144 TTCCTCCATAGAAATAGGATTCCAT 57.105 36.000 5.29 0.00 37.94 3.41
4392 4407 7.895144 TCCTCCATAGAAATAGGATTCCATT 57.105 36.000 5.29 0.40 33.18 3.16
4393 4408 8.293027 TCCTCCATAGAAATAGGATTCCATTT 57.707 34.615 5.29 8.78 33.18 2.32
4394 4409 8.386264 TCCTCCATAGAAATAGGATTCCATTTC 58.614 37.037 21.06 21.06 40.09 2.17
4402 4417 9.190317 AGAAATAGGATTCCATTTCTACAAACC 57.810 33.333 25.50 9.95 45.28 3.27
4403 4418 8.893563 AAATAGGATTCCATTTCTACAAACCA 57.106 30.769 5.29 0.00 0.00 3.67
4404 4419 8.893563 AATAGGATTCCATTTCTACAAACCAA 57.106 30.769 5.29 0.00 0.00 3.67
4405 4420 8.893563 ATAGGATTCCATTTCTACAAACCAAA 57.106 30.769 5.29 0.00 0.00 3.28
4406 4421 7.232118 AGGATTCCATTTCTACAAACCAAAG 57.768 36.000 5.29 0.00 0.00 2.77
4407 4422 6.211384 AGGATTCCATTTCTACAAACCAAAGG 59.789 38.462 5.29 0.00 0.00 3.11
4408 4423 5.799827 TTCCATTTCTACAAACCAAAGGG 57.200 39.130 0.00 0.00 41.29 3.95
4409 4424 3.576550 TCCATTTCTACAAACCAAAGGGC 59.423 43.478 0.00 0.00 37.90 5.19
4410 4425 3.578282 CCATTTCTACAAACCAAAGGGCT 59.422 43.478 0.00 0.00 37.90 5.19
4411 4426 4.321974 CCATTTCTACAAACCAAAGGGCTC 60.322 45.833 0.00 0.00 37.90 4.70
4412 4427 3.876309 TTCTACAAACCAAAGGGCTCT 57.124 42.857 0.00 0.00 37.90 4.09
4413 4428 4.986054 TTCTACAAACCAAAGGGCTCTA 57.014 40.909 0.00 0.00 37.90 2.43
4414 4429 4.986054 TCTACAAACCAAAGGGCTCTAA 57.014 40.909 0.00 0.00 37.90 2.10
4415 4430 5.313280 TCTACAAACCAAAGGGCTCTAAA 57.687 39.130 0.00 0.00 37.90 1.85
4416 4431 5.697067 TCTACAAACCAAAGGGCTCTAAAA 58.303 37.500 0.00 0.00 37.90 1.52
4417 4432 4.937201 ACAAACCAAAGGGCTCTAAAAG 57.063 40.909 0.00 0.00 37.90 2.27
4418 4433 4.542697 ACAAACCAAAGGGCTCTAAAAGA 58.457 39.130 0.00 0.00 37.90 2.52
4419 4434 4.959839 ACAAACCAAAGGGCTCTAAAAGAA 59.040 37.500 0.00 0.00 37.90 2.52
4420 4435 5.602561 ACAAACCAAAGGGCTCTAAAAGAAT 59.397 36.000 0.00 0.00 37.90 2.40
4421 4436 6.099701 ACAAACCAAAGGGCTCTAAAAGAATT 59.900 34.615 0.00 0.00 37.90 2.17
4422 4437 5.728637 ACCAAAGGGCTCTAAAAGAATTG 57.271 39.130 0.00 0.00 37.90 2.32
4423 4438 5.147767 ACCAAAGGGCTCTAAAAGAATTGT 58.852 37.500 0.00 0.00 37.90 2.71
4424 4439 5.602561 ACCAAAGGGCTCTAAAAGAATTGTT 59.397 36.000 0.00 0.00 37.90 2.83
4425 4440 6.099701 ACCAAAGGGCTCTAAAAGAATTGTTT 59.900 34.615 0.00 0.00 37.90 2.83
4426 4441 6.992123 CCAAAGGGCTCTAAAAGAATTGTTTT 59.008 34.615 16.49 16.49 34.07 2.43
4427 4442 7.171508 CCAAAGGGCTCTAAAAGAATTGTTTTC 59.828 37.037 15.83 3.16 31.96 2.29
4428 4443 7.603180 AAGGGCTCTAAAAGAATTGTTTTCT 57.397 32.000 15.83 4.47 31.96 2.52
4429 4444 8.706322 AAGGGCTCTAAAAGAATTGTTTTCTA 57.294 30.769 15.83 5.87 31.96 2.10
4430 4445 8.885693 AGGGCTCTAAAAGAATTGTTTTCTAT 57.114 30.769 15.83 0.00 31.96 1.98
4431 4446 9.975218 AGGGCTCTAAAAGAATTGTTTTCTATA 57.025 29.630 15.83 0.00 31.96 1.31
4467 4482 9.838339 TTCTATGAAATTCCTACAAGATTCCTC 57.162 33.333 0.00 0.00 0.00 3.71
4468 4483 9.218525 TCTATGAAATTCCTACAAGATTCCTCT 57.781 33.333 0.00 0.00 0.00 3.69
4472 4487 9.449719 TGAAATTCCTACAAGATTCCTCTAAAC 57.550 33.333 0.00 0.00 0.00 2.01
4473 4488 8.809468 AAATTCCTACAAGATTCCTCTAAACC 57.191 34.615 0.00 0.00 0.00 3.27
4474 4489 6.945636 TTCCTACAAGATTCCTCTAAACCA 57.054 37.500 0.00 0.00 0.00 3.67
4475 4490 6.945636 TCCTACAAGATTCCTCTAAACCAA 57.054 37.500 0.00 0.00 0.00 3.67
4476 4491 7.324388 TCCTACAAGATTCCTCTAAACCAAA 57.676 36.000 0.00 0.00 0.00 3.28
4477 4492 7.394816 TCCTACAAGATTCCTCTAAACCAAAG 58.605 38.462 0.00 0.00 0.00 2.77
4478 4493 7.236847 TCCTACAAGATTCCTCTAAACCAAAGA 59.763 37.037 0.00 0.00 0.00 2.52
4479 4494 7.883311 CCTACAAGATTCCTCTAAACCAAAGAA 59.117 37.037 0.00 0.00 0.00 2.52
4480 4495 7.751768 ACAAGATTCCTCTAAACCAAAGAAG 57.248 36.000 0.00 0.00 0.00 2.85
4481 4496 6.717084 ACAAGATTCCTCTAAACCAAAGAAGG 59.283 38.462 0.00 0.00 0.00 3.46
4482 4497 5.257262 AGATTCCTCTAAACCAAAGAAGGC 58.743 41.667 0.00 0.00 0.00 4.35
4483 4498 3.434940 TCCTCTAAACCAAAGAAGGCC 57.565 47.619 0.00 0.00 0.00 5.19
4484 4499 2.986728 TCCTCTAAACCAAAGAAGGCCT 59.013 45.455 0.00 0.00 0.00 5.19
4485 4500 3.084786 CCTCTAAACCAAAGAAGGCCTG 58.915 50.000 5.69 0.00 0.00 4.85
4486 4501 3.498661 CCTCTAAACCAAAGAAGGCCTGT 60.499 47.826 5.69 0.00 0.00 4.00
4487 4502 4.263331 CCTCTAAACCAAAGAAGGCCTGTA 60.263 45.833 5.69 0.00 0.00 2.74
4488 4503 5.501156 CTCTAAACCAAAGAAGGCCTGTAT 58.499 41.667 5.69 0.00 0.00 2.29
4489 4504 5.887754 TCTAAACCAAAGAAGGCCTGTATT 58.112 37.500 5.69 0.00 0.00 1.89
4490 4505 6.311735 TCTAAACCAAAGAAGGCCTGTATTT 58.688 36.000 5.69 5.01 0.00 1.40
4491 4506 5.887214 AAACCAAAGAAGGCCTGTATTTT 57.113 34.783 5.69 1.80 0.00 1.82
4492 4507 5.887214 AACCAAAGAAGGCCTGTATTTTT 57.113 34.783 5.69 0.00 0.00 1.94
4493 4508 5.213891 ACCAAAGAAGGCCTGTATTTTTG 57.786 39.130 5.69 9.01 0.00 2.44
4494 4509 4.653801 ACCAAAGAAGGCCTGTATTTTTGT 59.346 37.500 5.69 4.34 0.00 2.83
4495 4510 5.836358 ACCAAAGAAGGCCTGTATTTTTGTA 59.164 36.000 5.69 0.00 0.00 2.41
4496 4511 6.015434 ACCAAAGAAGGCCTGTATTTTTGTAG 60.015 38.462 5.69 0.17 0.00 2.74
4497 4512 6.389906 CAAAGAAGGCCTGTATTTTTGTAGG 58.610 40.000 5.69 0.00 0.00 3.18
4503 4518 4.701956 CCTGTATTTTTGTAGGCACAGG 57.298 45.455 4.33 4.33 44.98 4.00
4505 4520 5.957842 CTGTATTTTTGTAGGCACAGGAA 57.042 39.130 0.00 0.00 35.67 3.36
4506 4521 6.515272 CTGTATTTTTGTAGGCACAGGAAT 57.485 37.500 0.00 0.00 35.67 3.01
4507 4522 6.909550 TGTATTTTTGTAGGCACAGGAATT 57.090 33.333 0.00 0.00 35.67 2.17
4508 4523 8.050778 CTGTATTTTTGTAGGCACAGGAATTA 57.949 34.615 0.00 0.00 35.67 1.40
4509 4524 8.050778 TGTATTTTTGTAGGCACAGGAATTAG 57.949 34.615 0.00 0.00 35.67 1.73
4510 4525 5.385509 TTTTTGTAGGCACAGGAATTAGC 57.614 39.130 0.00 0.00 35.67 3.09
4511 4526 3.712016 TTGTAGGCACAGGAATTAGCA 57.288 42.857 0.00 0.00 35.67 3.49
4512 4527 3.266510 TGTAGGCACAGGAATTAGCAG 57.733 47.619 0.00 0.00 0.00 4.24
4513 4528 2.571653 TGTAGGCACAGGAATTAGCAGT 59.428 45.455 0.00 0.00 0.00 4.40
4514 4529 2.409948 AGGCACAGGAATTAGCAGTC 57.590 50.000 0.00 0.00 0.00 3.51
4515 4530 1.912043 AGGCACAGGAATTAGCAGTCT 59.088 47.619 0.00 0.00 0.00 3.24
4516 4531 2.307098 AGGCACAGGAATTAGCAGTCTT 59.693 45.455 0.00 0.00 0.00 3.01
4517 4532 3.519510 AGGCACAGGAATTAGCAGTCTTA 59.480 43.478 0.00 0.00 0.00 2.10
4518 4533 3.873952 GGCACAGGAATTAGCAGTCTTAG 59.126 47.826 0.00 0.00 0.00 2.18
4519 4534 3.873952 GCACAGGAATTAGCAGTCTTAGG 59.126 47.826 0.00 0.00 0.00 2.69
4520 4535 4.383118 GCACAGGAATTAGCAGTCTTAGGA 60.383 45.833 0.00 0.00 0.00 2.94
4521 4536 5.686124 GCACAGGAATTAGCAGTCTTAGGAT 60.686 44.000 0.00 0.00 0.00 3.24
4522 4537 6.463049 GCACAGGAATTAGCAGTCTTAGGATA 60.463 42.308 0.00 0.00 0.00 2.59
4523 4538 7.500992 CACAGGAATTAGCAGTCTTAGGATAA 58.499 38.462 0.00 0.00 0.00 1.75
4524 4539 7.655328 CACAGGAATTAGCAGTCTTAGGATAAG 59.345 40.741 0.00 0.00 0.00 1.73
4525 4540 7.345914 ACAGGAATTAGCAGTCTTAGGATAAGT 59.654 37.037 0.00 0.00 0.00 2.24
4526 4541 7.655328 CAGGAATTAGCAGTCTTAGGATAAGTG 59.345 40.741 0.00 0.00 0.00 3.16
4527 4542 6.931840 GGAATTAGCAGTCTTAGGATAAGTGG 59.068 42.308 0.00 0.00 0.00 4.00
4528 4543 7.202011 GGAATTAGCAGTCTTAGGATAAGTGGA 60.202 40.741 0.00 0.00 0.00 4.02
4529 4544 7.863901 ATTAGCAGTCTTAGGATAAGTGGAT 57.136 36.000 0.00 0.00 0.00 3.41
4530 4545 7.676683 TTAGCAGTCTTAGGATAAGTGGATT 57.323 36.000 0.00 0.00 0.00 3.01
4531 4546 6.567602 AGCAGTCTTAGGATAAGTGGATTT 57.432 37.500 0.00 0.00 0.00 2.17
4532 4547 6.963322 AGCAGTCTTAGGATAAGTGGATTTT 58.037 36.000 0.00 0.00 0.00 1.82
4533 4548 7.406104 AGCAGTCTTAGGATAAGTGGATTTTT 58.594 34.615 0.00 0.00 0.00 1.94
4534 4549 8.548877 AGCAGTCTTAGGATAAGTGGATTTTTA 58.451 33.333 0.00 0.00 0.00 1.52
4535 4550 9.174166 GCAGTCTTAGGATAAGTGGATTTTTAA 57.826 33.333 0.00 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
272 275 9.841295 TGTAACAAGTACAGAAAAAGGTAGAAT 57.159 29.630 0.00 0.00 37.81 2.40
279 282 9.916397 CTTACAGTGTAACAAGTACAGAAAAAG 57.084 33.333 11.75 0.00 43.49 2.27
552 560 0.320697 ACTACGGAAGCAGGAACCAC 59.679 55.000 0.00 0.00 0.00 4.16
761 769 5.690409 CGAGAAACTGTAAGCAAGTAACTCA 59.310 40.000 0.00 0.00 37.60 3.41
905 913 0.684153 ACCAACCAACAACAGCTGCT 60.684 50.000 15.27 0.00 0.00 4.24
915 926 4.081917 TCAAGAACCAAGAAACCAACCAAC 60.082 41.667 0.00 0.00 0.00 3.77
916 927 4.090090 TCAAGAACCAAGAAACCAACCAA 58.910 39.130 0.00 0.00 0.00 3.67
917 928 3.702792 TCAAGAACCAAGAAACCAACCA 58.297 40.909 0.00 0.00 0.00 3.67
1239 1250 1.919771 GAATTCCATCCCCACCCGA 59.080 57.895 0.00 0.00 0.00 5.14
1323 1334 1.406539 GACTTACGGGACCGAGCAATA 59.593 52.381 18.80 0.00 42.83 1.90
1635 1646 5.221145 CGAGTAGTAGAATGTCTTGGCAGAT 60.221 44.000 0.00 0.00 0.00 2.90
1801 1812 0.176680 CAACCGTCTCTGGAGGGATG 59.823 60.000 11.02 6.25 46.96 3.51
1828 1839 6.234920 TGTCCTTCCGAATTATCTCAAACAA 58.765 36.000 0.00 0.00 0.00 2.83
1984 1995 5.393068 TGGCCATTCAATAGAAGATTCCT 57.607 39.130 0.00 0.00 37.14 3.36
2225 2236 3.674997 TGTTCCTTGTTGCTCCTGTATC 58.325 45.455 0.00 0.00 0.00 2.24
2244 2255 9.300681 CCTGAAAATATGACAATGGGTATATGT 57.699 33.333 0.00 0.00 0.00 2.29
2397 2408 3.641436 TCTCTTGGTTCAGCTCTGTTACA 59.359 43.478 0.00 0.00 0.00 2.41
2475 2486 6.014242 CCTCCTTGACAGTGCCTAATATATGA 60.014 42.308 0.00 0.00 0.00 2.15
2594 2605 3.349927 TGCATGAGAACTGATTCCCAAG 58.650 45.455 0.00 0.00 35.18 3.61
2614 2625 8.984891 TGTTCATTATTTCTAAAGCCATGTTG 57.015 30.769 0.00 0.00 0.00 3.33
2766 2777 3.309121 CCACCTGTAATTGGGTCTTGGAT 60.309 47.826 0.00 0.00 32.95 3.41
2829 2840 0.251787 AATCCGCCTGGGCTTCTTTT 60.252 50.000 10.04 0.00 39.32 2.27
2958 2969 2.012051 GCATGGTACCCAAAGGACTCG 61.012 57.143 10.07 0.00 36.95 4.18
2997 3008 1.006832 GGCGGTACTTGTGTAGCATG 58.993 55.000 6.28 0.00 44.71 4.06
3036 3047 1.957177 GAGACGATATGTGCCTCCTCA 59.043 52.381 0.00 0.00 0.00 3.86
3216 3227 5.416083 TCAATGTAGTTATCCAAGGTGACG 58.584 41.667 0.00 0.00 0.00 4.35
3301 3312 2.036346 AGCCCTCTTTTGCACATTTGAC 59.964 45.455 0.00 0.00 0.00 3.18
3333 3344 5.974300 TCTTTAGCAATTTTATAGCGCTCG 58.026 37.500 16.34 0.00 34.18 5.03
3519 3530 2.158856 TCTACTGCCATTGCTCTCCATG 60.159 50.000 0.00 0.00 38.71 3.66
3520 3531 2.121948 TCTACTGCCATTGCTCTCCAT 58.878 47.619 0.00 0.00 38.71 3.41
3645 3656 1.880646 GCTGACAGGGAAAAGCCGTAA 60.881 52.381 4.26 0.00 37.63 3.18
3646 3657 0.321298 GCTGACAGGGAAAAGCCGTA 60.321 55.000 4.26 0.00 37.63 4.02
3656 3667 1.032794 TACTAGATGCGCTGACAGGG 58.967 55.000 14.88 14.88 0.00 4.45
3662 3673 1.926561 TGCTGTTACTAGATGCGCTG 58.073 50.000 9.73 0.00 0.00 5.18
3663 3674 2.544685 CTTGCTGTTACTAGATGCGCT 58.455 47.619 9.73 0.00 0.00 5.92
3664 3675 1.594862 CCTTGCTGTTACTAGATGCGC 59.405 52.381 0.00 0.00 0.00 6.09
3665 3676 2.205074 CCCTTGCTGTTACTAGATGCG 58.795 52.381 0.00 0.00 0.00 4.73
3666 3677 2.939103 CACCCTTGCTGTTACTAGATGC 59.061 50.000 0.00 0.00 0.00 3.91
3667 3678 2.939103 GCACCCTTGCTGTTACTAGATG 59.061 50.000 0.00 0.00 46.17 2.90
3668 3679 3.268023 GCACCCTTGCTGTTACTAGAT 57.732 47.619 0.00 0.00 46.17 1.98
3713 3724 9.241317 GCATATGTTCCTACATTCATTTTGAAG 57.759 33.333 4.29 0.00 42.29 3.02
3721 3732 5.376625 GAAGGGCATATGTTCCTACATTCA 58.623 41.667 16.50 0.00 42.29 2.57
3750 3761 6.038356 CCTACAGTGCCATTCATGAAAAATC 58.962 40.000 13.09 3.09 0.00 2.17
3757 3768 2.947652 CCTTCCTACAGTGCCATTCATG 59.052 50.000 0.00 0.00 0.00 3.07
3837 3849 6.272324 TCCCAACTAACATAAGGCTATGCTAT 59.728 38.462 0.00 0.00 38.87 2.97
3888 3901 3.432326 GGCCACAACCACCACAATTTAAA 60.432 43.478 0.00 0.00 0.00 1.52
3889 3902 2.103263 GGCCACAACCACCACAATTTAA 59.897 45.455 0.00 0.00 0.00 1.52
3897 3910 0.897863 GCATAAGGCCACAACCACCA 60.898 55.000 5.01 0.00 36.11 4.17
3901 3914 1.506262 CACGCATAAGGCCACAACC 59.494 57.895 5.01 0.00 40.31 3.77
3908 3921 0.727398 GTCACTTCCACGCATAAGGC 59.273 55.000 0.00 0.00 39.90 4.35
3910 3923 2.688507 ACTGTCACTTCCACGCATAAG 58.311 47.619 0.00 0.00 0.00 1.73
3916 3929 0.304705 GCACAACTGTCACTTCCACG 59.695 55.000 0.00 0.00 0.00 4.94
3955 3968 5.575606 GTGCTTAACTGCATAAGTACTCGAA 59.424 40.000 16.51 0.00 45.23 3.71
3993 4007 7.062956 CAGAACTCAAACATACAAGTGCGTATA 59.937 37.037 0.00 0.00 30.83 1.47
3995 4009 5.176774 CAGAACTCAAACATACAAGTGCGTA 59.823 40.000 0.00 0.00 0.00 4.42
3997 4011 4.024893 ACAGAACTCAAACATACAAGTGCG 60.025 41.667 0.00 0.00 0.00 5.34
4001 4015 5.679734 AGCACAGAACTCAAACATACAAG 57.320 39.130 0.00 0.00 0.00 3.16
4021 4035 6.408858 TCATACAAACGATCAAAGAGAAGC 57.591 37.500 0.00 0.00 0.00 3.86
4027 4041 6.803320 ACTGCATTTCATACAAACGATCAAAG 59.197 34.615 0.00 0.00 0.00 2.77
4109 4123 9.436957 CCTATCATATTAACTTGCGTCCTTTAT 57.563 33.333 0.00 0.00 0.00 1.40
4114 4128 5.348997 GCTCCTATCATATTAACTTGCGTCC 59.651 44.000 0.00 0.00 0.00 4.79
4130 4144 5.799827 AAATGTAGTGAGAGGCTCCTATC 57.200 43.478 11.71 2.85 35.10 2.08
4133 4147 4.917906 AAAAATGTAGTGAGAGGCTCCT 57.082 40.909 11.71 3.83 0.00 3.69
4154 4169 9.595823 CCTAAAAGACGAGAATCCATAGTAAAA 57.404 33.333 0.00 0.00 0.00 1.52
4155 4170 7.709613 GCCTAAAAGACGAGAATCCATAGTAAA 59.290 37.037 0.00 0.00 0.00 2.01
4156 4171 7.208080 GCCTAAAAGACGAGAATCCATAGTAA 58.792 38.462 0.00 0.00 0.00 2.24
4157 4172 6.239232 GGCCTAAAAGACGAGAATCCATAGTA 60.239 42.308 0.00 0.00 0.00 1.82
4158 4173 5.453480 GGCCTAAAAGACGAGAATCCATAGT 60.453 44.000 0.00 0.00 0.00 2.12
4159 4174 4.991687 GGCCTAAAAGACGAGAATCCATAG 59.008 45.833 0.00 0.00 0.00 2.23
4160 4175 4.654262 AGGCCTAAAAGACGAGAATCCATA 59.346 41.667 1.29 0.00 0.00 2.74
4161 4176 3.456277 AGGCCTAAAAGACGAGAATCCAT 59.544 43.478 1.29 0.00 0.00 3.41
4162 4177 2.838202 AGGCCTAAAAGACGAGAATCCA 59.162 45.455 1.29 0.00 0.00 3.41
4163 4178 3.545366 AGGCCTAAAAGACGAGAATCC 57.455 47.619 1.29 0.00 0.00 3.01
4164 4179 4.760878 AGAAGGCCTAAAAGACGAGAATC 58.239 43.478 5.16 0.00 0.00 2.52
4165 4180 4.828072 AGAAGGCCTAAAAGACGAGAAT 57.172 40.909 5.16 0.00 0.00 2.40
4166 4181 4.618920 AAGAAGGCCTAAAAGACGAGAA 57.381 40.909 5.16 0.00 0.00 2.87
4167 4182 4.315803 CAAAGAAGGCCTAAAAGACGAGA 58.684 43.478 5.16 0.00 0.00 4.04
4168 4183 3.437049 CCAAAGAAGGCCTAAAAGACGAG 59.563 47.826 5.16 0.00 0.00 4.18
4169 4184 3.181448 ACCAAAGAAGGCCTAAAAGACGA 60.181 43.478 5.16 0.00 0.00 4.20
4170 4185 3.146847 ACCAAAGAAGGCCTAAAAGACG 58.853 45.455 5.16 0.00 0.00 4.18
4171 4186 5.531122 AAACCAAAGAAGGCCTAAAAGAC 57.469 39.130 5.16 0.00 0.00 3.01
4172 4187 7.614192 CCTATAAACCAAAGAAGGCCTAAAAGA 59.386 37.037 5.16 0.00 0.00 2.52
4173 4188 7.614192 TCCTATAAACCAAAGAAGGCCTAAAAG 59.386 37.037 5.16 0.00 0.00 2.27
4174 4189 7.471890 TCCTATAAACCAAAGAAGGCCTAAAA 58.528 34.615 5.16 0.00 0.00 1.52
4175 4190 7.034967 TCCTATAAACCAAAGAAGGCCTAAA 57.965 36.000 5.16 0.00 0.00 1.85
4176 4191 6.645884 TCCTATAAACCAAAGAAGGCCTAA 57.354 37.500 5.16 0.00 0.00 2.69
4177 4192 6.841781 ATCCTATAAACCAAAGAAGGCCTA 57.158 37.500 5.16 0.00 0.00 3.93
4178 4193 5.734031 ATCCTATAAACCAAAGAAGGCCT 57.266 39.130 0.00 0.00 0.00 5.19
4179 4194 6.004574 CCTATCCTATAAACCAAAGAAGGCC 58.995 44.000 0.00 0.00 0.00 5.19
4180 4195 6.838382 TCCTATCCTATAAACCAAAGAAGGC 58.162 40.000 0.00 0.00 0.00 4.35
4181 4196 9.695155 TTTTCCTATCCTATAAACCAAAGAAGG 57.305 33.333 0.00 0.00 0.00 3.46
4195 4210 9.907819 TCCTATTCCTACAATTTTCCTATCCTA 57.092 33.333 0.00 0.00 0.00 2.94
4196 4211 8.814448 TCCTATTCCTACAATTTTCCTATCCT 57.186 34.615 0.00 0.00 0.00 3.24
4197 4212 9.862149 TTTCCTATTCCTACAATTTTCCTATCC 57.138 33.333 0.00 0.00 0.00 2.59
4200 4215 9.901172 GACTTTCCTATTCCTACAATTTTCCTA 57.099 33.333 0.00 0.00 0.00 2.94
4201 4216 8.390921 TGACTTTCCTATTCCTACAATTTTCCT 58.609 33.333 0.00 0.00 0.00 3.36
4202 4217 8.575649 TGACTTTCCTATTCCTACAATTTTCC 57.424 34.615 0.00 0.00 0.00 3.13
4205 4220 9.853177 CCTATGACTTTCCTATTCCTACAATTT 57.147 33.333 0.00 0.00 0.00 1.82
4206 4221 9.225682 TCCTATGACTTTCCTATTCCTACAATT 57.774 33.333 0.00 0.00 0.00 2.32
4207 4222 8.798975 TCCTATGACTTTCCTATTCCTACAAT 57.201 34.615 0.00 0.00 0.00 2.71
4208 4223 8.618240 TTCCTATGACTTTCCTATTCCTACAA 57.382 34.615 0.00 0.00 0.00 2.41
4209 4224 8.618240 TTTCCTATGACTTTCCTATTCCTACA 57.382 34.615 0.00 0.00 0.00 2.74
4210 4225 9.495572 CATTTCCTATGACTTTCCTATTCCTAC 57.504 37.037 0.00 0.00 0.00 3.18
4211 4226 9.447279 TCATTTCCTATGACTTTCCTATTCCTA 57.553 33.333 0.00 0.00 0.00 2.94
4212 4227 8.337118 TCATTTCCTATGACTTTCCTATTCCT 57.663 34.615 0.00 0.00 0.00 3.36
4213 4228 7.663493 CCTCATTTCCTATGACTTTCCTATTCC 59.337 40.741 0.00 0.00 0.00 3.01
4214 4229 7.174080 GCCTCATTTCCTATGACTTTCCTATTC 59.826 40.741 0.00 0.00 0.00 1.75
4215 4230 7.001073 GCCTCATTTCCTATGACTTTCCTATT 58.999 38.462 0.00 0.00 0.00 1.73
4216 4231 6.538263 GCCTCATTTCCTATGACTTTCCTAT 58.462 40.000 0.00 0.00 0.00 2.57
4217 4232 5.453339 CGCCTCATTTCCTATGACTTTCCTA 60.453 44.000 0.00 0.00 0.00 2.94
4218 4233 4.684485 CGCCTCATTTCCTATGACTTTCCT 60.684 45.833 0.00 0.00 0.00 3.36
4219 4234 3.561725 CGCCTCATTTCCTATGACTTTCC 59.438 47.826 0.00 0.00 0.00 3.13
4220 4235 4.271291 GTCGCCTCATTTCCTATGACTTTC 59.729 45.833 0.00 0.00 0.00 2.62
4221 4236 4.192317 GTCGCCTCATTTCCTATGACTTT 58.808 43.478 0.00 0.00 0.00 2.66
4222 4237 3.197766 TGTCGCCTCATTTCCTATGACTT 59.802 43.478 0.00 0.00 0.00 3.01
4223 4238 2.766263 TGTCGCCTCATTTCCTATGACT 59.234 45.455 0.00 0.00 0.00 3.41
4224 4239 3.179443 TGTCGCCTCATTTCCTATGAC 57.821 47.619 0.00 0.00 0.00 3.06
4225 4240 3.134623 ACATGTCGCCTCATTTCCTATGA 59.865 43.478 0.00 0.00 0.00 2.15
4226 4241 3.470709 ACATGTCGCCTCATTTCCTATG 58.529 45.455 0.00 0.00 0.00 2.23
4227 4242 3.845781 ACATGTCGCCTCATTTCCTAT 57.154 42.857 0.00 0.00 0.00 2.57
4228 4243 4.588951 AGATACATGTCGCCTCATTTCCTA 59.411 41.667 0.00 0.00 0.00 2.94
4229 4244 3.389329 AGATACATGTCGCCTCATTTCCT 59.611 43.478 0.00 0.00 0.00 3.36
4230 4245 3.733337 AGATACATGTCGCCTCATTTCC 58.267 45.455 0.00 0.00 0.00 3.13
4231 4246 4.371786 TGAGATACATGTCGCCTCATTTC 58.628 43.478 16.16 4.74 0.00 2.17
4232 4247 4.406648 TGAGATACATGTCGCCTCATTT 57.593 40.909 16.16 0.00 0.00 2.32
4233 4248 4.406648 TTGAGATACATGTCGCCTCATT 57.593 40.909 19.05 0.00 34.34 2.57
4234 4249 4.406648 TTTGAGATACATGTCGCCTCAT 57.593 40.909 19.05 1.66 34.34 2.90
4235 4250 3.885724 TTTGAGATACATGTCGCCTCA 57.114 42.857 16.16 16.16 32.67 3.86
4236 4251 3.743396 GGATTTGAGATACATGTCGCCTC 59.257 47.826 0.00 8.29 0.00 4.70
4237 4252 3.389329 AGGATTTGAGATACATGTCGCCT 59.611 43.478 0.00 0.00 0.00 5.52
4238 4253 3.733337 AGGATTTGAGATACATGTCGCC 58.267 45.455 0.00 0.00 0.00 5.54
4239 4254 6.159293 TCATAGGATTTGAGATACATGTCGC 58.841 40.000 0.00 0.00 0.00 5.19
4240 4255 7.374272 ACTCATAGGATTTGAGATACATGTCG 58.626 38.462 0.00 0.00 42.63 4.35
4241 4256 9.853555 CTACTCATAGGATTTGAGATACATGTC 57.146 37.037 0.00 0.00 42.63 3.06
4258 4273 8.748412 CATCTCCTTTCCTATTCCTACTCATAG 58.252 40.741 0.00 0.00 0.00 2.23
4259 4274 7.179338 GCATCTCCTTTCCTATTCCTACTCATA 59.821 40.741 0.00 0.00 0.00 2.15
4260 4275 6.013812 GCATCTCCTTTCCTATTCCTACTCAT 60.014 42.308 0.00 0.00 0.00 2.90
4261 4276 5.305644 GCATCTCCTTTCCTATTCCTACTCA 59.694 44.000 0.00 0.00 0.00 3.41
4262 4277 5.279758 GGCATCTCCTTTCCTATTCCTACTC 60.280 48.000 0.00 0.00 0.00 2.59
4263 4278 4.595350 GGCATCTCCTTTCCTATTCCTACT 59.405 45.833 0.00 0.00 0.00 2.57
4264 4279 4.263112 GGGCATCTCCTTTCCTATTCCTAC 60.263 50.000 0.00 0.00 34.39 3.18
4265 4280 3.910627 GGGCATCTCCTTTCCTATTCCTA 59.089 47.826 0.00 0.00 34.39 2.94
4266 4281 2.713708 GGGCATCTCCTTTCCTATTCCT 59.286 50.000 0.00 0.00 34.39 3.36
4267 4282 2.713708 AGGGCATCTCCTTTCCTATTCC 59.286 50.000 0.00 0.00 32.13 3.01
4268 4283 4.445557 AAGGGCATCTCCTTTCCTATTC 57.554 45.455 0.00 0.00 44.14 1.75
4277 4292 2.309755 TGTGAATCAAAGGGCATCTCCT 59.690 45.455 0.00 0.00 39.17 3.69
4278 4293 2.726821 TGTGAATCAAAGGGCATCTCC 58.273 47.619 0.00 0.00 0.00 3.71
4279 4294 3.949754 TGATGTGAATCAAAGGGCATCTC 59.050 43.478 10.68 0.00 35.22 2.75
4280 4295 3.972133 TGATGTGAATCAAAGGGCATCT 58.028 40.909 10.68 0.00 35.22 2.90
4281 4296 4.931661 ATGATGTGAATCAAAGGGCATC 57.068 40.909 4.45 4.45 33.83 3.91
4282 4297 5.698104 TCTATGATGTGAATCAAAGGGCAT 58.302 37.500 0.00 0.00 33.83 4.40
4283 4298 5.114764 TCTATGATGTGAATCAAAGGGCA 57.885 39.130 0.00 0.00 33.83 5.36
4284 4299 6.645790 AATCTATGATGTGAATCAAAGGGC 57.354 37.500 0.00 0.00 33.83 5.19
4307 4322 3.695830 AGCCTACACTCGATGGAAAAA 57.304 42.857 0.00 0.00 0.00 1.94
4308 4323 4.811969 TTAGCCTACACTCGATGGAAAA 57.188 40.909 0.00 0.00 0.00 2.29
4309 4324 4.161565 ACATTAGCCTACACTCGATGGAAA 59.838 41.667 0.00 0.00 0.00 3.13
4310 4325 3.704566 ACATTAGCCTACACTCGATGGAA 59.295 43.478 0.00 0.00 0.00 3.53
4311 4326 3.296854 ACATTAGCCTACACTCGATGGA 58.703 45.455 0.00 0.00 0.00 3.41
4312 4327 3.735237 ACATTAGCCTACACTCGATGG 57.265 47.619 0.00 0.00 0.00 3.51
4313 4328 7.715265 AATAAACATTAGCCTACACTCGATG 57.285 36.000 0.00 0.00 0.00 3.84
4314 4329 8.732746 AAAATAAACATTAGCCTACACTCGAT 57.267 30.769 0.00 0.00 0.00 3.59
4315 4330 7.279313 GGAAAATAAACATTAGCCTACACTCGA 59.721 37.037 0.00 0.00 0.00 4.04
4316 4331 7.280205 AGGAAAATAAACATTAGCCTACACTCG 59.720 37.037 0.00 0.00 0.00 4.18
4317 4332 8.507524 AGGAAAATAAACATTAGCCTACACTC 57.492 34.615 0.00 0.00 0.00 3.51
4320 4335 9.349713 CCATAGGAAAATAAACATTAGCCTACA 57.650 33.333 0.00 0.00 30.34 2.74
4321 4336 9.569122 TCCATAGGAAAATAAACATTAGCCTAC 57.431 33.333 0.00 0.00 30.34 3.18
4323 4338 9.660544 ATTCCATAGGAAAATAAACATTAGCCT 57.339 29.630 2.16 0.00 45.41 4.58
4324 4339 9.696917 CATTCCATAGGAAAATAAACATTAGCC 57.303 33.333 2.16 0.00 45.41 3.93
4330 4345 8.748412 CCTTCACATTCCATAGGAAAATAAACA 58.252 33.333 2.16 0.00 45.41 2.83
4331 4346 8.966868 TCCTTCACATTCCATAGGAAAATAAAC 58.033 33.333 2.16 0.00 45.41 2.01
4332 4347 9.713684 ATCCTTCACATTCCATAGGAAAATAAA 57.286 29.630 2.16 0.00 45.41 1.40
4335 4350 7.946776 CCTATCCTTCACATTCCATAGGAAAAT 59.053 37.037 2.16 0.00 45.41 1.82
4336 4351 7.128728 TCCTATCCTTCACATTCCATAGGAAAA 59.871 37.037 2.16 0.00 45.41 2.29
4337 4352 6.619437 TCCTATCCTTCACATTCCATAGGAAA 59.381 38.462 2.16 0.00 45.41 3.13
4338 4353 6.150332 TCCTATCCTTCACATTCCATAGGAA 58.850 40.000 0.30 0.30 46.39 3.36
4339 4354 5.726560 TCCTATCCTTCACATTCCATAGGA 58.273 41.667 2.01 2.01 39.61 2.94
4340 4355 6.270927 TCTTCCTATCCTTCACATTCCATAGG 59.729 42.308 0.00 0.00 35.93 2.57
4341 4356 7.308450 TCTTCCTATCCTTCACATTCCATAG 57.692 40.000 0.00 0.00 0.00 2.23
4342 4357 7.690454 TTCTTCCTATCCTTCACATTCCATA 57.310 36.000 0.00 0.00 0.00 2.74
4343 4358 6.581388 TTCTTCCTATCCTTCACATTCCAT 57.419 37.500 0.00 0.00 0.00 3.41
4344 4359 6.581388 ATTCTTCCTATCCTTCACATTCCA 57.419 37.500 0.00 0.00 0.00 3.53
4345 4360 6.488344 GGAATTCTTCCTATCCTTCACATTCC 59.512 42.308 5.23 0.00 46.57 3.01
4346 4361 7.503521 GGAATTCTTCCTATCCTTCACATTC 57.496 40.000 5.23 0.00 46.57 2.67
4363 4378 8.610369 GGAATCCTATTTCTATGGAGGAATTCT 58.390 37.037 5.23 0.00 41.37 2.40
4364 4379 8.386264 TGGAATCCTATTTCTATGGAGGAATTC 58.614 37.037 0.00 0.00 41.37 2.17
4365 4380 8.293027 TGGAATCCTATTTCTATGGAGGAATT 57.707 34.615 0.00 0.00 41.37 2.17
4366 4381 7.895144 TGGAATCCTATTTCTATGGAGGAAT 57.105 36.000 0.00 0.00 41.37 3.01
4367 4382 7.895144 ATGGAATCCTATTTCTATGGAGGAA 57.105 36.000 0.00 0.00 41.37 3.36
4368 4383 7.895144 AATGGAATCCTATTTCTATGGAGGA 57.105 36.000 0.00 0.00 42.22 3.71
4369 4384 8.389366 AGAAATGGAATCCTATTTCTATGGAGG 58.611 37.037 24.68 0.00 46.32 4.30
4377 4392 8.966868 TGGTTTGTAGAAATGGAATCCTATTTC 58.033 33.333 19.94 19.94 41.38 2.17
4378 4393 8.893563 TGGTTTGTAGAAATGGAATCCTATTT 57.106 30.769 0.00 5.22 0.00 1.40
4379 4394 8.893563 TTGGTTTGTAGAAATGGAATCCTATT 57.106 30.769 0.00 0.00 0.00 1.73
4380 4395 8.893563 TTTGGTTTGTAGAAATGGAATCCTAT 57.106 30.769 0.00 0.00 0.00 2.57
4381 4396 7.396055 CCTTTGGTTTGTAGAAATGGAATCCTA 59.604 37.037 0.00 0.00 0.00 2.94
4382 4397 6.211384 CCTTTGGTTTGTAGAAATGGAATCCT 59.789 38.462 0.00 0.00 0.00 3.24
4383 4398 6.398095 CCTTTGGTTTGTAGAAATGGAATCC 58.602 40.000 0.00 0.00 0.00 3.01
4384 4399 6.398095 CCCTTTGGTTTGTAGAAATGGAATC 58.602 40.000 0.00 0.00 0.00 2.52
4385 4400 5.279960 GCCCTTTGGTTTGTAGAAATGGAAT 60.280 40.000 0.00 0.00 0.00 3.01
4386 4401 4.039852 GCCCTTTGGTTTGTAGAAATGGAA 59.960 41.667 0.00 0.00 0.00 3.53
4387 4402 3.576550 GCCCTTTGGTTTGTAGAAATGGA 59.423 43.478 0.00 0.00 0.00 3.41
4388 4403 3.578282 AGCCCTTTGGTTTGTAGAAATGG 59.422 43.478 0.00 0.00 0.00 3.16
4389 4404 4.524328 AGAGCCCTTTGGTTTGTAGAAATG 59.476 41.667 0.00 0.00 0.00 2.32
4390 4405 4.740902 AGAGCCCTTTGGTTTGTAGAAAT 58.259 39.130 0.00 0.00 0.00 2.17
4391 4406 4.178956 AGAGCCCTTTGGTTTGTAGAAA 57.821 40.909 0.00 0.00 0.00 2.52
4392 4407 3.876309 AGAGCCCTTTGGTTTGTAGAA 57.124 42.857 0.00 0.00 0.00 2.10
4393 4408 4.986054 TTAGAGCCCTTTGGTTTGTAGA 57.014 40.909 0.00 0.00 0.00 2.59
4394 4409 5.768164 TCTTTTAGAGCCCTTTGGTTTGTAG 59.232 40.000 0.00 0.00 0.00 2.74
4395 4410 5.697067 TCTTTTAGAGCCCTTTGGTTTGTA 58.303 37.500 0.00 0.00 0.00 2.41
4396 4411 4.542697 TCTTTTAGAGCCCTTTGGTTTGT 58.457 39.130 0.00 0.00 0.00 2.83
4397 4412 5.529581 TTCTTTTAGAGCCCTTTGGTTTG 57.470 39.130 0.00 0.00 0.00 2.93
4398 4413 6.099701 ACAATTCTTTTAGAGCCCTTTGGTTT 59.900 34.615 0.00 0.00 0.00 3.27
4399 4414 5.602561 ACAATTCTTTTAGAGCCCTTTGGTT 59.397 36.000 0.00 0.00 0.00 3.67
4400 4415 5.147767 ACAATTCTTTTAGAGCCCTTTGGT 58.852 37.500 0.00 0.00 0.00 3.67
4401 4416 5.728637 ACAATTCTTTTAGAGCCCTTTGG 57.271 39.130 0.00 0.00 0.00 3.28
4402 4417 7.928167 AGAAAACAATTCTTTTAGAGCCCTTTG 59.072 33.333 0.00 0.00 0.00 2.77
4403 4418 8.023021 AGAAAACAATTCTTTTAGAGCCCTTT 57.977 30.769 0.00 0.00 0.00 3.11
4404 4419 7.603180 AGAAAACAATTCTTTTAGAGCCCTT 57.397 32.000 0.00 0.00 0.00 3.95
4405 4420 8.885693 ATAGAAAACAATTCTTTTAGAGCCCT 57.114 30.769 0.00 0.00 0.00 5.19
4441 4456 9.838339 GAGGAATCTTGTAGGAATTTCATAGAA 57.162 33.333 0.00 0.00 0.00 2.10
4442 4457 9.218525 AGAGGAATCTTGTAGGAATTTCATAGA 57.781 33.333 0.00 0.00 0.00 1.98
4446 4461 9.449719 GTTTAGAGGAATCTTGTAGGAATTTCA 57.550 33.333 0.00 0.00 0.00 2.69
4447 4462 8.894731 GGTTTAGAGGAATCTTGTAGGAATTTC 58.105 37.037 0.00 0.00 0.00 2.17
4448 4463 8.390921 TGGTTTAGAGGAATCTTGTAGGAATTT 58.609 33.333 0.00 0.00 0.00 1.82
4449 4464 7.928873 TGGTTTAGAGGAATCTTGTAGGAATT 58.071 34.615 0.00 0.00 0.00 2.17
4450 4465 7.510675 TGGTTTAGAGGAATCTTGTAGGAAT 57.489 36.000 0.00 0.00 0.00 3.01
4451 4466 6.945636 TGGTTTAGAGGAATCTTGTAGGAA 57.054 37.500 0.00 0.00 0.00 3.36
4452 4467 6.945636 TTGGTTTAGAGGAATCTTGTAGGA 57.054 37.500 0.00 0.00 0.00 2.94
4453 4468 7.394816 TCTTTGGTTTAGAGGAATCTTGTAGG 58.605 38.462 0.00 0.00 0.00 3.18
4454 4469 8.848474 TTCTTTGGTTTAGAGGAATCTTGTAG 57.152 34.615 0.00 0.00 0.00 2.74
4455 4470 7.883311 CCTTCTTTGGTTTAGAGGAATCTTGTA 59.117 37.037 0.00 0.00 0.00 2.41
4456 4471 6.717084 CCTTCTTTGGTTTAGAGGAATCTTGT 59.283 38.462 0.00 0.00 0.00 3.16
4457 4472 6.349694 GCCTTCTTTGGTTTAGAGGAATCTTG 60.350 42.308 0.00 0.00 0.00 3.02
4458 4473 5.712446 GCCTTCTTTGGTTTAGAGGAATCTT 59.288 40.000 0.00 0.00 0.00 2.40
4459 4474 5.257262 GCCTTCTTTGGTTTAGAGGAATCT 58.743 41.667 0.00 0.00 0.00 2.40
4460 4475 4.399618 GGCCTTCTTTGGTTTAGAGGAATC 59.600 45.833 0.00 0.00 0.00 2.52
4461 4476 4.044698 AGGCCTTCTTTGGTTTAGAGGAAT 59.955 41.667 0.00 0.00 0.00 3.01
4462 4477 3.397955 AGGCCTTCTTTGGTTTAGAGGAA 59.602 43.478 0.00 0.00 0.00 3.36
4463 4478 2.986728 AGGCCTTCTTTGGTTTAGAGGA 59.013 45.455 0.00 0.00 0.00 3.71
4464 4479 3.084786 CAGGCCTTCTTTGGTTTAGAGG 58.915 50.000 0.00 0.00 0.00 3.69
4465 4480 3.756117 ACAGGCCTTCTTTGGTTTAGAG 58.244 45.455 0.00 0.00 0.00 2.43
4466 4481 3.876309 ACAGGCCTTCTTTGGTTTAGA 57.124 42.857 0.00 0.00 0.00 2.10
4467 4482 6.590234 AAATACAGGCCTTCTTTGGTTTAG 57.410 37.500 0.00 0.00 0.00 1.85
4468 4483 6.987403 AAAATACAGGCCTTCTTTGGTTTA 57.013 33.333 0.00 0.00 0.00 2.01
4469 4484 5.887214 AAAATACAGGCCTTCTTTGGTTT 57.113 34.783 0.00 0.00 0.00 3.27
4470 4485 5.130311 ACAAAAATACAGGCCTTCTTTGGTT 59.870 36.000 0.00 0.00 0.00 3.67
4471 4486 4.653801 ACAAAAATACAGGCCTTCTTTGGT 59.346 37.500 0.00 0.00 0.00 3.67
4472 4487 5.213891 ACAAAAATACAGGCCTTCTTTGG 57.786 39.130 0.00 0.22 0.00 3.28
4473 4488 6.389906 CCTACAAAAATACAGGCCTTCTTTG 58.610 40.000 0.00 11.02 0.00 2.77
4474 4489 5.047306 GCCTACAAAAATACAGGCCTTCTTT 60.047 40.000 0.00 0.00 46.47 2.52
4475 4490 4.462834 GCCTACAAAAATACAGGCCTTCTT 59.537 41.667 0.00 0.00 46.47 2.52
4476 4491 4.017126 GCCTACAAAAATACAGGCCTTCT 58.983 43.478 0.00 0.00 46.47 2.85
4477 4492 4.371855 GCCTACAAAAATACAGGCCTTC 57.628 45.455 0.00 0.00 46.47 3.46
4482 4497 4.701956 CCTGTGCCTACAAAAATACAGG 57.298 45.455 6.81 6.81 46.17 4.00
4483 4498 5.957842 TTCCTGTGCCTACAAAAATACAG 57.042 39.130 0.00 0.00 36.14 2.74
4484 4499 6.909550 AATTCCTGTGCCTACAAAAATACA 57.090 33.333 0.00 0.00 36.14 2.29
4485 4500 6.972901 GCTAATTCCTGTGCCTACAAAAATAC 59.027 38.462 0.00 0.00 36.14 1.89
4486 4501 6.661377 TGCTAATTCCTGTGCCTACAAAAATA 59.339 34.615 0.00 0.00 36.14 1.40
4487 4502 5.480073 TGCTAATTCCTGTGCCTACAAAAAT 59.520 36.000 0.00 0.00 36.14 1.82
4488 4503 4.830046 TGCTAATTCCTGTGCCTACAAAAA 59.170 37.500 0.00 0.00 36.14 1.94
4489 4504 4.402829 TGCTAATTCCTGTGCCTACAAAA 58.597 39.130 0.00 0.00 36.14 2.44
4490 4505 4.009675 CTGCTAATTCCTGTGCCTACAAA 58.990 43.478 0.00 0.00 36.14 2.83
4491 4506 3.009033 ACTGCTAATTCCTGTGCCTACAA 59.991 43.478 0.00 0.00 36.14 2.41
4492 4507 2.571653 ACTGCTAATTCCTGTGCCTACA 59.428 45.455 0.00 0.00 35.08 2.74
4493 4508 3.118592 AGACTGCTAATTCCTGTGCCTAC 60.119 47.826 0.00 0.00 0.00 3.18
4494 4509 3.107601 AGACTGCTAATTCCTGTGCCTA 58.892 45.455 0.00 0.00 0.00 3.93
4495 4510 1.912043 AGACTGCTAATTCCTGTGCCT 59.088 47.619 0.00 0.00 0.00 4.75
4496 4511 2.409948 AGACTGCTAATTCCTGTGCC 57.590 50.000 0.00 0.00 0.00 5.01
4497 4512 3.873952 CCTAAGACTGCTAATTCCTGTGC 59.126 47.826 0.00 0.00 0.00 4.57
4498 4513 5.344743 TCCTAAGACTGCTAATTCCTGTG 57.655 43.478 0.00 0.00 0.00 3.66
4499 4514 7.345914 ACTTATCCTAAGACTGCTAATTCCTGT 59.654 37.037 1.10 0.00 0.00 4.00
4500 4515 7.655328 CACTTATCCTAAGACTGCTAATTCCTG 59.345 40.741 1.10 0.00 0.00 3.86
4501 4516 7.202047 CCACTTATCCTAAGACTGCTAATTCCT 60.202 40.741 1.10 0.00 0.00 3.36
4502 4517 6.931840 CCACTTATCCTAAGACTGCTAATTCC 59.068 42.308 1.10 0.00 0.00 3.01
4503 4518 7.727181 TCCACTTATCCTAAGACTGCTAATTC 58.273 38.462 1.10 0.00 0.00 2.17
4504 4519 7.676683 TCCACTTATCCTAAGACTGCTAATT 57.323 36.000 1.10 0.00 0.00 1.40
4505 4520 7.863901 ATCCACTTATCCTAAGACTGCTAAT 57.136 36.000 1.10 0.00 0.00 1.73
4506 4521 7.676683 AATCCACTTATCCTAAGACTGCTAA 57.323 36.000 1.10 0.00 0.00 3.09
4507 4522 7.676683 AAATCCACTTATCCTAAGACTGCTA 57.323 36.000 1.10 0.00 0.00 3.49
4508 4523 6.567602 AAATCCACTTATCCTAAGACTGCT 57.432 37.500 1.10 0.00 0.00 4.24
4509 4524 7.631717 AAAAATCCACTTATCCTAAGACTGC 57.368 36.000 1.10 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.