Multiple sequence alignment - TraesCS5D01G200400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G200400 chr5D 100.000 2462 0 0 1 2462 302894622 302897083 0.000000e+00 4547.0
1 TraesCS5D01G200400 chr5B 91.002 2045 124 28 444 2460 347927619 347929631 0.000000e+00 2702.0
2 TraesCS5D01G200400 chr5B 83.772 456 46 14 1018 1462 347677560 347677998 8.200000e-110 407.0
3 TraesCS5D01G200400 chr5B 88.148 135 14 2 11 145 347926966 347927098 2.530000e-35 159.0
4 TraesCS5D01G200400 chr5A 92.123 1498 58 21 154 1617 395002301 395000830 0.000000e+00 2058.0
5 TraesCS5D01G200400 chr5A 90.409 855 52 15 1617 2460 394998564 394997729 0.000000e+00 1098.0
6 TraesCS5D01G200400 chr5A 88.341 446 35 13 1027 1462 395063051 395062613 1.010000e-143 520.0
7 TraesCS5D01G200400 chr3D 80.000 130 24 2 20 148 394978444 394978316 7.250000e-16 95.3
8 TraesCS5D01G200400 chr3B 80.833 120 21 2 30 148 519067500 519067382 2.610000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G200400 chr5D 302894622 302897083 2461 False 4547.0 4547 100.000 1 2462 1 chr5D.!!$F1 2461
1 TraesCS5D01G200400 chr5B 347926966 347929631 2665 False 1430.5 2702 89.575 11 2460 2 chr5B.!!$F2 2449
2 TraesCS5D01G200400 chr5A 394997729 395002301 4572 True 1578.0 2058 91.266 154 2460 2 chr5A.!!$R2 2306

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
408 450 0.037326 GCACGGGCATAGCATAGCTA 60.037 55.0 3.77 0.0 45.55 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2010 4558 0.104356 TACAGTTGGTTCCCCCTCCA 60.104 55.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.281070 CCTCCGGATGGGCGATTG 60.281 66.667 3.57 0.00 35.24 2.67
25 26 4.908687 TCCGGATGGGCGATTGCG 62.909 66.667 0.00 0.00 44.10 4.85
44 45 1.807742 CGGAGGGATTTACGCAAACAA 59.192 47.619 0.00 0.00 0.00 2.83
45 46 2.226912 CGGAGGGATTTACGCAAACAAA 59.773 45.455 0.00 0.00 0.00 2.83
46 47 3.669557 CGGAGGGATTTACGCAAACAAAG 60.670 47.826 0.00 0.00 0.00 2.77
47 48 3.254903 GGAGGGATTTACGCAAACAAAGT 59.745 43.478 0.00 0.00 0.00 2.66
48 49 4.226761 GAGGGATTTACGCAAACAAAGTG 58.773 43.478 0.00 0.00 0.00 3.16
127 128 3.058160 GGCGCTTGGTCTGCACAT 61.058 61.111 7.64 0.00 0.00 3.21
128 129 2.177531 GCGCTTGGTCTGCACATG 59.822 61.111 0.00 0.00 0.00 3.21
131 132 1.229975 CGCTTGGTCTGCACATGTCA 61.230 55.000 0.00 0.00 0.00 3.58
145 146 4.160594 CACATGTCATGTTCAACGGAATG 58.839 43.478 15.98 0.00 42.70 2.67
148 149 2.478514 TGTCATGTTCAACGGAATGTCG 59.521 45.455 0.00 0.00 35.05 4.35
150 151 1.464608 CATGTTCAACGGAATGTCGCT 59.535 47.619 0.00 0.00 35.05 4.93
151 152 1.144969 TGTTCAACGGAATGTCGCTC 58.855 50.000 0.00 0.00 35.05 5.03
163 203 4.092968 GGAATGTCGCTCTGTTCGTTATTT 59.907 41.667 0.00 0.00 0.00 1.40
191 231 5.233988 TGCCATTGGTTAAATTAGTTGCAC 58.766 37.500 4.26 0.00 0.00 4.57
192 232 5.221521 TGCCATTGGTTAAATTAGTTGCACA 60.222 36.000 4.26 0.00 0.00 4.57
219 259 5.814188 TCATTGGATCGATTAGCTGCATATC 59.186 40.000 0.00 3.21 0.00 1.63
248 290 6.592166 TGCCGTTAGTTTATTTGAAGTTACG 58.408 36.000 0.00 0.00 35.76 3.18
275 317 9.829507 TTCATAACATTTGAGGATGTTTTGTTT 57.170 25.926 15.59 0.00 45.38 2.83
356 398 3.067091 CTGCACTGGAGCTCCACT 58.933 61.111 32.00 20.02 42.01 4.00
370 412 3.314331 CACTGCCTCCCTCGTGGT 61.314 66.667 2.33 0.00 34.77 4.16
372 414 1.982938 ACTGCCTCCCTCGTGGTAC 60.983 63.158 2.33 0.00 34.77 3.34
390 432 1.680314 CCAAGGCCAGGAGGAAAGC 60.680 63.158 5.01 0.00 36.89 3.51
392 434 1.075659 AAGGCCAGGAGGAAAGCAC 59.924 57.895 5.01 0.00 36.89 4.40
402 444 1.748879 GGAAAGCACGGGCATAGCA 60.749 57.895 14.57 0.00 44.61 3.49
403 445 1.103398 GGAAAGCACGGGCATAGCAT 61.103 55.000 14.57 0.00 44.61 3.79
404 446 1.593196 GAAAGCACGGGCATAGCATA 58.407 50.000 14.57 0.00 44.61 3.14
405 447 1.532868 GAAAGCACGGGCATAGCATAG 59.467 52.381 14.57 0.00 44.61 2.23
406 448 0.886490 AAGCACGGGCATAGCATAGC 60.886 55.000 14.57 0.00 44.61 2.97
407 449 1.302033 GCACGGGCATAGCATAGCT 60.302 57.895 3.77 0.00 40.57 3.32
408 450 0.037326 GCACGGGCATAGCATAGCTA 60.037 55.000 3.77 0.00 45.55 3.32
414 457 2.093288 GGGCATAGCATAGCTAGCATGA 60.093 50.000 23.07 8.49 44.66 3.07
433 476 0.832135 ACTTGAGCACGGAGGGAAGA 60.832 55.000 0.00 0.00 0.00 2.87
436 479 0.832135 TGAGCACGGAGGGAAGAACT 60.832 55.000 0.00 0.00 0.00 3.01
446 489 3.815962 GGAGGGAAGAACTGTGAAACTTC 59.184 47.826 0.00 0.00 38.04 3.01
653 893 7.417570 GGAGAATCTTCCCTCGTCATAAACTAA 60.418 40.741 0.00 0.00 33.73 2.24
654 894 7.266400 AGAATCTTCCCTCGTCATAAACTAAC 58.734 38.462 0.00 0.00 0.00 2.34
694 935 2.030562 CAAACCTCAGACGGCGGT 59.969 61.111 13.24 0.00 0.00 5.68
716 957 2.960129 GGCGAATCTACGTGCGGG 60.960 66.667 0.00 0.00 35.59 6.13
718 959 2.960129 CGAATCTACGTGCGGGCC 60.960 66.667 0.00 0.00 0.00 5.80
813 1071 1.864565 AACCTAAAACGCGTTACCGT 58.135 45.000 26.87 15.67 44.41 4.83
840 1107 3.188786 GCGCGCACCTCCTTACTG 61.189 66.667 29.10 0.00 0.00 2.74
890 1157 3.552273 CGGTCCGGCCTATATATACATGC 60.552 52.174 2.34 0.00 34.25 4.06
895 1162 3.318275 CGGCCTATATATACATGCTCCGT 59.682 47.826 0.00 0.00 0.00 4.69
896 1163 4.517832 CGGCCTATATATACATGCTCCGTA 59.482 45.833 0.00 0.00 0.00 4.02
897 1164 5.562307 CGGCCTATATATACATGCTCCGTAC 60.562 48.000 0.00 0.00 0.00 3.67
898 1165 5.535406 GGCCTATATATACATGCTCCGTACT 59.465 44.000 0.00 0.00 0.00 2.73
899 1166 6.713903 GGCCTATATATACATGCTCCGTACTA 59.286 42.308 0.00 0.00 0.00 1.82
909 1176 6.578944 ACATGCTCCGTACTATACATTTTGA 58.421 36.000 0.00 0.00 0.00 2.69
927 1194 0.454600 GATCTTCGTCACCGCCAGTA 59.545 55.000 0.00 0.00 0.00 2.74
928 1195 0.456221 ATCTTCGTCACCGCCAGTAG 59.544 55.000 0.00 0.00 0.00 2.57
929 1196 1.805945 CTTCGTCACCGCCAGTAGC 60.806 63.158 0.00 0.00 38.52 3.58
930 1197 3.291101 TTCGTCACCGCCAGTAGCC 62.291 63.158 0.00 0.00 38.78 3.93
931 1198 4.063967 CGTCACCGCCAGTAGCCA 62.064 66.667 0.00 0.00 38.78 4.75
932 1199 2.345991 GTCACCGCCAGTAGCCAA 59.654 61.111 0.00 0.00 38.78 4.52
933 1200 1.741770 GTCACCGCCAGTAGCCAAG 60.742 63.158 0.00 0.00 38.78 3.61
934 1201 2.214216 TCACCGCCAGTAGCCAAGT 61.214 57.895 0.00 0.00 38.78 3.16
991 1258 2.476821 TCTTTCTTGGAACGTTCGACC 58.523 47.619 21.34 9.78 0.00 4.79
992 1259 2.159071 TCTTTCTTGGAACGTTCGACCA 60.159 45.455 21.34 12.40 0.00 4.02
993 1260 1.860676 TTCTTGGAACGTTCGACCAG 58.139 50.000 21.34 13.02 35.08 4.00
994 1261 0.599204 TCTTGGAACGTTCGACCAGC 60.599 55.000 21.34 7.55 35.08 4.85
1257 1524 1.587054 CGAGTCCACGGAGCTCTTT 59.413 57.895 14.64 0.00 0.00 2.52
1473 1740 0.674534 GGTTCTAGGCGATGGACGAT 59.325 55.000 0.00 0.00 45.77 3.73
1514 1781 5.528043 TGCAAGCTCAAATTTGTTCCTTA 57.472 34.783 17.47 0.00 0.00 2.69
1544 1811 5.156355 CCTGGTTGATTCTTTCATTTGACG 58.844 41.667 0.00 0.00 33.34 4.35
1548 1815 6.432783 TGGTTGATTCTTTCATTTGACGGTAT 59.567 34.615 0.00 0.00 33.34 2.73
1720 4254 6.961359 TTTCACTGAACTCCACGTATATTG 57.039 37.500 0.00 0.00 0.00 1.90
1891 4439 4.714802 TCATTCTACTTCCTCCGATCCAAA 59.285 41.667 0.00 0.00 0.00 3.28
1893 4441 5.693769 TTCTACTTCCTCCGATCCAAATT 57.306 39.130 0.00 0.00 0.00 1.82
1898 4446 9.101325 TCTACTTCCTCCGATCCAAATTATAAT 57.899 33.333 0.00 0.00 0.00 1.28
1948 4496 8.915654 GGAGTATTACTTTTTGTGCTTTGAATG 58.084 33.333 0.00 0.00 0.00 2.67
2010 4558 9.606631 TTAGTTGAAATTTGGCTAATGTTGTTT 57.393 25.926 0.00 0.00 0.00 2.83
2014 4562 6.705381 TGAAATTTGGCTAATGTTGTTTGGAG 59.295 34.615 0.00 0.00 0.00 3.86
2020 4568 2.785357 AATGTTGTTTGGAGGGGGAA 57.215 45.000 0.00 0.00 0.00 3.97
2092 4640 7.749539 ATTTAAAAGTTCAACCTTGTGTTCG 57.250 32.000 0.00 0.00 34.00 3.95
2117 4665 7.803189 CGCGCTATAAAGTTTCCATGAAATTAT 59.197 33.333 5.56 0.00 33.97 1.28
2163 4712 0.674895 GCACCGAGGAGCAACTTGAT 60.675 55.000 6.67 0.00 0.00 2.57
2172 4721 3.950395 AGGAGCAACTTGATCTTATTGCC 59.050 43.478 18.61 12.71 46.89 4.52
2175 4724 3.698040 AGCAACTTGATCTTATTGCCAGG 59.302 43.478 18.61 0.00 46.89 4.45
2179 4728 1.953559 TGATCTTATTGCCAGGTCGC 58.046 50.000 0.00 0.00 0.00 5.19
2191 4740 2.260434 GGTCGCCTCGTGCAAGTA 59.740 61.111 0.00 0.00 41.33 2.24
2193 4743 1.805945 GTCGCCTCGTGCAAGTAGG 60.806 63.158 11.73 11.73 41.33 3.18
2196 4746 2.662596 CCTCGTGCAAGTAGGCCA 59.337 61.111 5.01 0.00 0.00 5.36
2200 4750 0.323302 TCGTGCAAGTAGGCCAATGA 59.677 50.000 5.01 0.00 0.00 2.57
2254 4804 7.936496 TTCTTGTGCTCATATTTGTGGAATA 57.064 32.000 0.00 0.00 34.82 1.75
2341 4892 7.712264 TGTCATTTCTAAAGCCACAAAAATG 57.288 32.000 0.00 0.00 36.12 2.32
2460 5011 2.690786 TCATAACAAGCACGTGTACCC 58.309 47.619 18.38 0.00 0.00 3.69
2461 5012 2.037381 TCATAACAAGCACGTGTACCCA 59.963 45.455 18.38 0.00 0.00 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.974698 GCAATCGCCCATCCGGAG 60.975 66.667 11.34 1.73 0.00 4.63
8 9 4.908687 CGCAATCGCCCATCCGGA 62.909 66.667 6.61 6.61 33.11 5.14
13 14 4.569180 CCCTCCGCAATCGCCCAT 62.569 66.667 0.00 0.00 33.11 4.00
23 24 0.098200 GTTTGCGTAAATCCCTCCGC 59.902 55.000 0.99 0.00 45.92 5.54
25 26 3.254903 ACTTTGTTTGCGTAAATCCCTCC 59.745 43.478 0.99 0.00 0.00 4.30
42 43 0.944311 CACCGTCTCCGACCACTTTG 60.944 60.000 0.00 0.00 35.63 2.77
44 45 1.831286 ACACCGTCTCCGACCACTT 60.831 57.895 0.00 0.00 35.63 3.16
45 46 2.203451 ACACCGTCTCCGACCACT 60.203 61.111 0.00 0.00 35.63 4.00
46 47 2.049433 CACACCGTCTCCGACCAC 60.049 66.667 0.00 0.00 35.63 4.16
47 48 3.986006 GCACACCGTCTCCGACCA 61.986 66.667 0.00 0.00 35.63 4.02
112 113 1.229975 TGACATGTGCAGACCAAGCG 61.230 55.000 1.15 0.00 33.85 4.68
115 116 2.275134 ACATGACATGTGCAGACCAA 57.725 45.000 20.21 0.00 43.01 3.67
127 128 2.478514 CGACATTCCGTTGAACATGACA 59.521 45.455 0.00 0.00 32.13 3.58
128 129 2.724839 GCGACATTCCGTTGAACATGAC 60.725 50.000 0.00 0.00 32.13 3.06
131 132 1.732259 GAGCGACATTCCGTTGAACAT 59.268 47.619 0.00 0.00 32.13 2.71
145 146 2.412089 AGCAAATAACGAACAGAGCGAC 59.588 45.455 0.00 0.00 0.00 5.19
148 149 4.274865 GCATAGCAAATAACGAACAGAGC 58.725 43.478 0.00 0.00 0.00 4.09
150 151 4.257731 TGGCATAGCAAATAACGAACAGA 58.742 39.130 0.00 0.00 0.00 3.41
151 152 4.614555 TGGCATAGCAAATAACGAACAG 57.385 40.909 0.00 0.00 0.00 3.16
163 203 7.264221 CAACTAATTTAACCAATGGCATAGCA 58.736 34.615 0.00 0.00 0.00 3.49
191 231 3.183172 CAGCTAATCGATCCAATGACGTG 59.817 47.826 0.00 0.00 0.00 4.49
192 232 3.384668 CAGCTAATCGATCCAATGACGT 58.615 45.455 0.00 0.00 0.00 4.34
219 259 8.197988 ACTTCAAATAAACTAACGGCATAGAG 57.802 34.615 1.71 0.00 0.00 2.43
248 290 8.816640 ACAAAACATCCTCAAATGTTATGAAC 57.183 30.769 2.94 0.00 46.49 3.18
324 366 1.515519 GCAGCGTCCATGCATGTTG 60.516 57.895 24.58 14.55 43.31 3.33
330 372 3.807538 CCAGTGCAGCGTCCATGC 61.808 66.667 0.00 0.00 44.11 4.06
356 398 2.682494 GGTACCACGAGGGAGGCA 60.682 66.667 7.15 0.00 41.15 4.75
370 412 0.991920 CTTTCCTCCTGGCCTTGGTA 59.008 55.000 3.32 0.00 0.00 3.25
372 414 1.680314 GCTTTCCTCCTGGCCTTGG 60.680 63.158 3.32 6.67 0.00 3.61
390 432 2.001812 CTAGCTATGCTATGCCCGTG 57.998 55.000 0.00 0.00 40.54 4.94
392 434 0.247460 TGCTAGCTATGCTATGCCCG 59.753 55.000 17.23 0.75 40.54 6.13
402 444 3.726607 GTGCTCAAGTCATGCTAGCTAT 58.273 45.455 17.23 5.06 31.77 2.97
403 445 2.480244 CGTGCTCAAGTCATGCTAGCTA 60.480 50.000 17.23 2.58 31.77 3.32
404 446 1.738365 CGTGCTCAAGTCATGCTAGCT 60.738 52.381 17.23 0.00 31.77 3.32
405 447 0.649475 CGTGCTCAAGTCATGCTAGC 59.351 55.000 8.10 8.10 31.28 3.42
406 448 1.134995 TCCGTGCTCAAGTCATGCTAG 60.135 52.381 0.00 0.00 0.00 3.42
407 449 0.894835 TCCGTGCTCAAGTCATGCTA 59.105 50.000 0.00 0.00 0.00 3.49
408 450 0.390866 CTCCGTGCTCAAGTCATGCT 60.391 55.000 0.00 0.00 0.00 3.79
414 457 0.832135 TCTTCCCTCCGTGCTCAAGT 60.832 55.000 0.00 0.00 0.00 3.16
433 476 3.813529 GCATAGCGAAGTTTCACAGTT 57.186 42.857 0.00 0.00 0.00 3.16
468 697 8.575589 GGTGTCATGGCAAATATTATCAATACA 58.424 33.333 0.00 0.00 0.00 2.29
642 882 7.097192 TGTCACAGGAGATGTTAGTTTATGAC 58.903 38.462 0.00 0.00 41.41 3.06
653 893 3.923354 GTGCTGTCACAGGAGATGT 57.077 52.632 7.00 0.00 45.43 3.06
694 935 1.796253 CGCACGTAGATTCGCCTGTTA 60.796 52.381 0.00 0.00 0.00 2.41
761 1019 4.141892 TGGTGGTGAAGGTAATACCGTATG 60.142 45.833 3.47 0.00 44.90 2.39
770 1028 4.140994 TGGGTAAATTGGTGGTGAAGGTAA 60.141 41.667 0.00 0.00 0.00 2.85
890 1157 7.861372 ACGAAGATCAAAATGTATAGTACGGAG 59.139 37.037 0.00 0.00 0.00 4.63
895 1162 8.867112 GGTGACGAAGATCAAAATGTATAGTA 57.133 34.615 0.00 0.00 0.00 1.82
896 1163 7.772332 GGTGACGAAGATCAAAATGTATAGT 57.228 36.000 0.00 0.00 0.00 2.12
927 1194 2.261671 CGAGGTGCGTACTTGGCT 59.738 61.111 3.01 0.00 34.64 4.75
928 1195 3.488090 GCGAGGTGCGTACTTGGC 61.488 66.667 7.00 7.00 43.41 4.52
991 1258 3.818787 GGCGTTCATGGCTGGCTG 61.819 66.667 2.00 0.00 0.00 4.85
992 1259 4.349503 TGGCGTTCATGGCTGGCT 62.350 61.111 2.00 0.00 35.06 4.75
993 1260 4.120331 GTGGCGTTCATGGCTGGC 62.120 66.667 0.00 0.00 35.06 4.85
994 1261 3.803082 CGTGGCGTTCATGGCTGG 61.803 66.667 0.00 0.00 35.06 4.85
1299 1566 3.740397 TCGTACCGCACCCTCGTG 61.740 66.667 0.00 0.00 43.35 4.35
1473 1740 1.742880 GCGCTCAAGCATCAGACCA 60.743 57.895 0.00 0.00 42.21 4.02
1503 1770 5.393866 ACCAGGTCAACATAAGGAACAAAT 58.606 37.500 0.00 0.00 0.00 2.32
1514 1781 5.139727 TGAAAGAATCAACCAGGTCAACAT 58.860 37.500 0.00 0.00 34.30 2.71
1544 1811 2.751259 TCACTCTGTGTGTACGGATACC 59.249 50.000 9.41 0.00 46.27 2.73
1548 1815 2.228103 GTCATCACTCTGTGTGTACGGA 59.772 50.000 9.41 0.00 46.27 4.69
1670 4204 8.617809 ACATTAGTAACGTCACTCAAAAACATT 58.382 29.630 0.00 0.00 0.00 2.71
1720 4254 1.575803 GTGACAAACGACGTGCAAAAC 59.424 47.619 0.00 0.00 0.00 2.43
1898 4446 6.046593 CCTCATTATACTAAAGGTGCGTCAA 58.953 40.000 0.00 0.00 0.00 3.18
1918 4466 5.876357 AGCACAAAAAGTAATACTCCCTCA 58.124 37.500 0.00 0.00 0.00 3.86
1931 4479 9.128107 ACGATATTACATTCAAAGCACAAAAAG 57.872 29.630 0.00 0.00 0.00 2.27
1985 4533 9.039870 CAAACAACATTAGCCAAATTTCAACTA 57.960 29.630 0.00 0.00 0.00 2.24
2010 4558 0.104356 TACAGTTGGTTCCCCCTCCA 60.104 55.000 0.00 0.00 0.00 3.86
2014 4562 2.953453 ACTTTTACAGTTGGTTCCCCC 58.047 47.619 0.00 0.00 27.32 5.40
2020 4568 5.754890 ACGTCGATTTACTTTTACAGTTGGT 59.245 36.000 0.00 0.00 36.88 3.67
2092 4640 9.463443 AATAATTTCATGGAAACTTTATAGCGC 57.537 29.630 0.00 0.00 34.23 5.92
2117 4665 4.892433 ACAATGCCCATCGAAATTTGAAA 58.108 34.783 0.00 0.00 0.00 2.69
2127 4676 0.809636 TGCGTAGACAATGCCCATCG 60.810 55.000 0.00 0.00 39.57 3.84
2163 4712 4.954933 GGCGACCTGGCAATAAGA 57.045 55.556 0.00 0.00 44.08 2.10
2179 4728 0.392998 ATTGGCCTACTTGCACGAGG 60.393 55.000 3.32 0.00 0.00 4.63
2191 4740 9.995594 ATATACCATATACAATTTCATTGGCCT 57.004 29.630 3.32 0.00 44.42 5.19
2277 4827 0.673644 CGGCTCCCACGAATTGAGTT 60.674 55.000 0.00 0.00 0.00 3.01
2435 4986 4.829064 ACACGTGCTTGTTATGAATGTT 57.171 36.364 17.22 0.00 0.00 2.71
2439 4990 3.068560 GGGTACACGTGCTTGTTATGAA 58.931 45.455 17.22 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.