>input_sequence_79538
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------------------------------------------------------------------ATGAACGCCACGGT
CAGTGTTAGCGGCGGTGCCGTCTTTGGCCGGAGGAGCCGCCGCACTGTGAAGGCGGCGGCGGCTGCGAGCGCTGGCGTCC
GCCGCCCGGCGGGCAGGACCACGGACTACTACAAGGTGCTGTCGCTGGAGCACTCGGCGGGCGTGGGCGAGGAGGAGGTC
AAGCGCGCGTACCGGCGGCTGGCGCTGCAGTACCACCCCGACGTGTGCCCGCCGTCGCGCAGGGCCGAGTCCACGGAGCT
CTTTGTCGAGCTCCGCCGCGCCTACGAGACGCTGTCCGACCCGGCCACGAGGGTGCGGTACGACGCCGAGCTGAGGACGG
GCCGGGCTGAGGCGAGGCCGCCGGCGGATGGGTTCGCGAGGGACGTGTGGGAGGCGCAGCTGTGCGTGCTGCGGGCGCGG
TCCGAGCGTCGGCAGAAGGCGAGCGGGTACAGCGGCCGCCGGTTCTAG--------------------------------
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>chr5D_1_TraesCS5D01G200400
GATTCGCCTCCGGATGGGCGATTGCGGAGGGATTTACGCAAACAAAGTGGTCGGAGACGGTGTGCGACTCGCCGCAACTC
CAACGGGCGCGGACAAGCACGGGCAGCGGCGGCGCTTGGTCTGCACATGTCATGTTCAACGGAATGTCGCTCT-------
--------------------------------GTTCGTTATTTGCTATGCCATTGGTTAAATTAGTTGCACACGTCATTG
GATCGATTAGCTGCATATC--TCTATGCCGTTAGTTTATTTGAAGTTACGTTCATAACATTTGAGGATGTTTTGTTTGTG
GAATCTTGGTTAGCCACTTGGTCGGGCGAACCCTCCATGGTTGGACAACATGCATGGACGCTGCACTGGAGCTCCACTGC
CTCCCTCGTGGTACCAAGGCCAGGAGGAAAGCACGGGCATAGCATAGCTA-GCATGACTTGAGCACGGAGGGAAGAACTG
TGAAACTTC-----------------------------------------------------------------------
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-----------------------------------GCTATGCGCTTACGCACATGATGTATTGATAATATTTGCCATGAC
ACCCAAGACAATGCTCCGAGAGAAACAAGGAATAGCGCGTGAACTATTCCCATTGCCGGAGCGGATTAATTAACCAACTA
ATCAGAGCTGTCGCTCACCTGGATTTTTAATTT--TGC---------ACGTACGGGTCTGTGAGGAGGAGAATCTTCCCT
CGTCATAAACTAACATCTCCTGTGACAGC-ACACGGTCAAACCTCAGACGGCGGTAACAGGCGAATCTACGTGCGGGCCG
---------CACGCGCAGGCT--------TCTTTGTCTCCGTCCAAATGGCGCATCCGCATACGGTATTACCTTCACCAC
CAATTTACCCAAACCTAAAACGCGTTACCGTACCGGCCGAGCG---------CGCACCTCCTTACTGTTTGTCTCGTCCT
CCGGCGCGCCGCTCCGGTCCGGCCTATATATACATGCTCCGTACTATACATTTTGATCTTCGTCACCGCCAGTAGCCAAG
TACGCACCTCGCTCTACACCGCCTGCAAAGACTTCTTTCTTTCTTGGAACGTTCGACCAGCCAGCCATGAACGCCACGGT
CAGTGTTAGCGGCGGTGCCGTCTTTGGCCGGAGGAGCCGCCGCACTGTGAAGGCGGCGGCGGCTGCGAGCGCTGGCGTCC
GCCGCCCGGCGGGCAGGACCACGGACTACTACAAGGTGCTGTCGCTGGAGCACTCGGCGGGCGTGGGCGAGGAGGAGGTC
AAGCGCGCGTACCGGCGGCTGGCGCTGCAGTACCACCCCGACGTGTGCCCGCCGTCGCGCAGGGCCGAGTCCACGGAGCT
CTTTGTCGAGCTCCGCCGCGCCTACGAGACGCTGTCCGACCCGGCCACGAGGGTGCGGTACGACGCCGAGCTGAGGACGG
GCCGGGCTGAGGCGAGGCCGCCGGCGGATGGGTTCGCGAGGGACGTGTGGGAGGCGCAGCTGTGCGTGCTGCGGGCGCGG
TCCGAGCGTCGGCAGAAGGCGAGCGGGTACAGCGGCCGCCGGTTCTAGGCGATGGACGATGGTCTGATGCTTGAGCGCTG
CAAGCTCAAATTTGTTCCTTATGTTGACCTGGTTGATTCTTTCATTTGACGGTATCCGTACACACAGAGTGATGACTCGT
GGCATCTGTTTTTATTTGGGTGTTTGAGTTGTGTAAGGTGTAA-------------------------------------
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---------------------------------------------------------------------TATCATGACAA
AAATAACTGATTTTA-AATGAAGTTTTTTAATTCAAAGTTTTGAATGTTTTTGAGTGACGTTACTAATGTTTTCACTGAA
CTCCACGTATATTGTTTTGCACGTCGTTTGTCACCCCAAAATAAACTGAACTCATTCAGTTAGATTCTAAATCCCATTCT
CATATAATTTGAATTAGAAGCAAAATATTTCAGTTACCAT------ACATA----TAGTATGTTTGG----ATGTCAAAC
GGAAGTAAAAGTTAATCATTCTACTTCCTCCGATCCAAATTATAATTGACGCACCTTTAGTATAATGAGGGAGTATTACT
TTTTGTGCTTTGAATGTAATATCGTTTTCACACATAAAATATTGCTCAAAATTAGTTGAAATTTGGCTAATGTTGTTTGG
AGGGGGAACCAACTGTAAAAGTAAATCGACGTCCAAATTTTCGTAGAACTTTGGTATTTAAAAGTTCAACCTTGTGTTCG
CGCTATAAAGTTTCCATGAAATTATTTCAA-ATTTCGATGGGCATTGTCTACGCACCGAGGAGCAACTTGATCTTATTGC
CAGGTCGCCTCGTGCAAGTA-GGCCAATGAAATTGTATATGGTATATTCATGGTTTCAATTCTTGTGCTCATATTTGTGG
AATACAATTTCAATTAATGGAGTATGAACTCAATTCGTGGGAGCCGGACAAGGTTTTAATTGGATTTGTCATTTCTAAAG
CCAC-AAAAATGTTGTTAAAAATTAACGAAGTTGCATATGTATGCATAATATTTAGATCTAGATTCATCATTTCATATTT
TCTTTAGAAACACCGTATAGACGCAAACATTCATAACAAGCACGTGTACCCA
>chr5B_11
----------CGGGTGGGCGATTCCAGAGGGATTTACGCAAAGAGGT--GTCGGAGACGGTGTGCGACTCGCCGCAACTC
CAACGGGAACGGACAAGCACTGGTAGCGGCGGTGCATGGTCTGCACAGCTCCTGTTCAACGGAATATCACAGTAGAACAC
GGTATATTTTTCGCTCCATTTTGTATCGCTTCGTTCATTTTTCGCTATGTCATTGGTTAAATTAGTTGCATGTGTCATTC
GTTCGATTAGCTGCATATG--TCCATGCCGTTAGTTTATTTGAAATGACATTCATAACATTTGAGGATGTTTTGTTGGTG
GAATGTTGGTTGGCCACTTGGTCGGGCGAACCATCCATGGTTGGATAC----CATGGAAACTGCACTGGAGCTCCACCGC
CTCCCTCGTGGCATCAAGGCCAGGAGGAAAGTATGGGCATAGCCGCATAGCGCATGGCTTGAGCACGGAGCGAAGCCCAG
TGAAACTTAGGTGGTGTTTGTTTCTCTAGTCTTATGACTTTTTCTAGTCCCTGAGACTTTTTGAAAAAGACTCTTAAGGA
GGTGCTTCTAAAGACTTTTAGCAAAAAGTCTTAAAAAAGTCCCATCCTGTTTGGTTTGCTAGGGACTTTTTCTAGTCCCT
ACACCAAAAAGTCCCTGAAAACAAACACCCCCTTAGCTATGCGCTTACGCACATCAGGTATTGATAATATTAGCCACGAC
ACCAAAGACAATGCTCCGAGAGAAACAAGGAATAGCGCGTGAACTATTCCCATTGCCGGAGCGGATTAATTAACCAAGTA
ATCAGAGCTGTCGCTCACCTGGATTTTTAATTTCTTGC---------ACGTACGGGTCTGTGAGGAGGAGAATCCTCCCC
---CATAAACTATGATCTCCTGTGACAGCCACACGGTCAAACCTCAGACGGCGGAAACAGGCGAATCTACGTGCGG----
GTCGACCGCCACGCGCACGCT--------TCTTTGTCTCCGTCCAAATGGCGCATCCGTATACGGTA-TACCTTCACCAC
CAATTTACCCAAACCTAAAACGCGTTGCAGCACCGGCCGCGCGCGTCCGCACCGCACCTCCTTACTATTTGTCTCGTCCT
CCGGCGCGCCGTTCCGGTCCGGCCTATATATACATGGTTCG-----TACATTTTGTTCTTCGTCACCGCCAGTG------
--CGCACCTCGCCCTACACCACCTGCAAAGACTTCTGTCTTGGTCCGATCGAT--------CAGCCATGAACGCCACGGT
CAGTGTTAGCGGCGGTGCCATCTTTGGCCGGAGGAGCCACCGCACTGTCAAGGCGGCGGCGGCTGCGAGCGCTGGCGTCC
GCCGCCCGGCGGGCAGGACCACGGACTACTACAAGGTGCTGTCGCTGGAGCACTCGGCGGGCGTGGGCGAGGAGGAGGTC
AAGCGCGCGTACCGGCGGCTGGCGCTGCAGTACCACCCCGACGTGTGCCCGACGTCGCGCAGGGCCGAGTCCACGGAGCT
CTTCGTCGAGCTCCGCCGCGCCTACGAGACGCTGTCCGACCCGGCTACGAGGGTCCGGTACGACGCTGAGCTGAGGACGG
GCCGGGCTGAGGCGAGGCTGGCGGCGGATGGGTTCGCGAGGGACGTGTGGGAGGCGCAGCTGTGCGTGCTGCGGGCGCGG
TCCGAGCGGCGCCAGAAGGCGAGCGGGTACAGCGGCCGCCGGTTCTAGGCGATGGATGACGGTATGATGTTTGAGCGCTG
CAAGCTCAAGTTTGTTCCTTGTGTTGACCTTGTTGATTCTTTCATTTGACCGTACCCGTACACACAGAGTGATGACTCGT
GGCATCTGTTTTTATTTGGGTGTTTGAGTTGTGTAAGGCGTAA-------------------------------------
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---------------------------------------------------------------------TATCATGACAA
AAATAACTGATTTTTCAATGAAGTTTTTTT-TTCAAAGTTTTGCATGTTTATGAGTAACGTTACTAATGTTTTCACTGAA
CTCCACGTGTATTATTTTGCACGTCGTTTGTCACCTGAAAATAAACTGAAGTCAGTCAGTTAGATTCTAAATCCCATTTT
CATATAATTTGAATTAGATGCAAAATATTCCAGTTACCAT------ACATAGGAGTAGTATGTTTGGATGCATGTCAAAC
GGAAGTAAAAGTTAATCATTCTACTTCCTCCGACCCAAT---TAACTGACGCACCTTTAGTATAAAACTGCAGTGTTATT
TTTTGTGCTTTCAATTTAATATCGTTGTTACACATAAAATATTGCTCAAAATCAGTTGAAATTTGGCTAATGTTGTTCGG
CCAGGGATCCAACTGTAAAAGTAAATCCACGTCCAAATTTTCATAGAACTTTGGTATTTAAAAGTTCAACCTTGTGTTCA
CGCTATAAAGTTTCCACGAAATTAATTCAA-TTTTTGATGGGCATT-TCTACGCACCGAGGAGCAACTTGAGCTTATTGC
-AGATCGACTCGTACAAGTGGGTCCCATGTAATTGTATGTAGTACATTTATGGTTTCAATTCTTGTGCTCATATTTGTGG
AATTCAATTTCGGTTCTCGGAGTATGGACTCAATTCGTGGGAGCAGGGCAAGGTTTTAATTGGATTTGTCATTTCTAAAG
CTAAAAAAAATCTTGTTGAAAATTGACCAAGTTGCATATGTATGCATAG-ATTTAGATCTAGATTCATCATTTCATATTT
TCTTTAGAAATACGGTATAGACGCAGACACTCACAACAAGCATGTGTACC--
>chr5A_154
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--------------------------------GTTCGTTATTCGCTATGCCATTGGTCAAATTAGTTGCATGCGACATTG
GATCGATTAGCTGCATATATGTCTATGCTGTTAGTTTATTTGAAGTTACATTCATAATATTTAAGGATGTTTTGTTGATG
GAATCTTGATGAGCCACTTTGTCGGACGAACCCTCCATGGTTGGGTAC----CACGGACGCTGCACTGGAGCTCCAC--C
CTCCCTCGTGGCATCAGGGCCAGGAGGAAAGTATGGGCACAGCTGCATAGCGCATGGCTTGAGCACGGAGGGAAGCACGG
TGAAA---------------------------------------------------------------------------
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-------------------------------CTTAGCTATGCGCTTACGCACATCAGGTATTGATAATATTTGCCATGAC
ACCCAAGACAATGCTCCGAGAGAAACAAGGAATAGCGCGTGAACTATTCCCATTGCCGGAGCGGATTAATTAACCAACTA
ATCAGAGCTGTCGCTCGCCTGGATTTTTAATTTCTTGCACCATTTGCACGTACGGGTCTGTGAGGAGGAGAATCTTCCAT
CATCATAAACTATGATCTCCTGTAACAGCCACACGGTCAAACCTCAGACGGCGGAAACAGGCGAATCTACGTGCGGCCGG
GTCGACCGCCACCTTCCGCACGCGCACTCTCTTTGTCTCCGTCCAAATGGCGCATCCGTATACGGTA-TACCTTCACCAC
CAATTTACCCAAACCTAAAACGCGTTACCGCACCGGCCGACCG---------CGCACCTCCTTACTATTTGTCTCGTCCT
CCGGCGCGCCGCTCCGGTCCGGCCTATATATACATGGTCCG-----TACATTTTGTTCTTCGTCACCGCCAGT-------
-ACGCACCTCGCTCTACACCGCCTGCAAGGACTTCTTTCTTTCTTGGAACGTTCGAC----CAGCCATGAACGCCACGGT
CAGTGTTAGCGGCGGTGCCGTCTTTGGCCGGAGGAGCCGCCGCACTGTCAAGGCGGCCGCGGCTGCGAGCGCTGGCGTCC
GCCGCCCGGCGGGCAGGGCCACGGACTACTACAAGGTGCTGTCGCTGGAGCACTCGGCGGGCGTGGGCGAGGAGGAGGTC
AAGCGCGCGTACCGGCGGCTGGCGCTGCAGTACCACCCCGACGTGTGCCCGCCGTCGCGCAGGGCCGAGTCCACGGAGCT
CTTCGTCGAGCTCCGCCGCGCCTACGAGACGCTGTCCGACCCGGCTACGAGGGTGCGGTACGACGCTGAGCTGAGGACGG
GCCGGGCTGAGGCGAGGCCGCCGGCGGATGGGTTCGCGAGGGACGTGTGGGAGGCGCAGCTGTGCGTGCTGCGGGCGCGG
TCCGAGCGGCGGCAGAAGGCGAGCGGGTACAGCGGCCGCCGGTTCTAGGCGATGGACGACGGTCTGATGCTTGAGCGCTG
CAAGCTCAAGTTTGTTCCTTGTGTTGACCTGGTTGATTCTTTCATTTGACCGTACCCGTACACACAGAGTGATGACTCGT
GGCATCTGTTTTTATTTGGGTGTTTGAGTTGTGTAAGGTGTAACTAGGTAATTGCCCGTGCGTTGCAACGGGATAAATAT
TTTATATTTAATCATTGTGATTTATTTAGCATGGTTTTCGCATTGTGCTACAGAACCGAAATAAAAGATGCGAGCTCATA
ATTTGTCAAATGAGTACACAACAACTATCATTTCCCCTTTTTTTCAGCTATGACACAAAGCAGCGTCCAATCTTTCAATT
CCTATTTCAACTATCTTGGCAATATAGCTATATTTCTAGTGGTTATAATACCAACAGTGCACTAAAGTGCACCATAGAGT
CATGCCACACCATACGCATCAATTCACAAGCAACTGATTTGAAGATGTGAAAGTAAAAAAGGAAAATCTAGTATACCTTT
GGCACCCGCAAAAGAATCAGTAGAACTTTGGATGAAGAAAGTACATCGGAAGGTCTTGTTAGTTGCAACTCTGGCACAAG
AGTACTCCTGCAAACAAAAATATTTTGGCAGTGTGTATTTATCTATAATAGATCAAGGGCAAGCAAAAGCAATCGTTCCC
AGATGCCCTGAATCTTCCCCGGCAAAGACCTTGCATTACAAGTTGTTACAGCAGAGAATCACCATGTATGCTGCCGCCTA
CACGACCTGCAGCAGCAAATAATGCACACCGGCTCAATATAGGGAGTTGCAGAGAGTAAGCGAGCTGCCGCTCCACACGA
GTTGCCGCTGTACTGACATCCAGTAATAAGTATGTTCTTTTCAAGTAGAAGGGATGAGATTAATTAGATTTTTCACTTTT
GTATATTGGCACCTTGAATTCCAGTAGTGCTTGCACTTAGTTTTGGCCGGGCTGCACTATCATGTTCACAATGGAACACA
ACGTCAATACCTTTACATAAAAATTTATAGGGGAATATGAGCTGCCAACCAGCATTCATGTACACTTTGATCTGAGAACC
TGCTGTAGGCAAGTGAAAACTGTTTCTGAATTTCAGAAAGGAAATGGAAAAGAGGGTATGTGTTATATACCTTCAGAGTT
TGTCTTCATCGAAAACCTTTCCAAGCGAACAACTATGAATTAAGAAACTGTATTTATAATGCACAAACATTCTCTTCGTA
AAATCCATGCATTAACCATCGGGGAGCTCTTCCATATATATCCTTGAAAAAATAGTGTGGCAGGCTTATGTTAGCGACAA
CTGAAGAGCACACGGATATTTAACATAGCATCCCAGTAGCAAGGATAAATATTAAGAAACAATATGCACTATAACACAAC
TAATTAATCGGAGCAATTCACTTCCTGTAACTGGAGATAGGCATTCAATCACACTACAATCACAACTGCATATGCATCTT
GAATGCCACAATTTGAGCATCATGCACGCCTAGCCAACAAATTGATTGTAGTTGGATAAAACTGAAGCAGGTCCCCTTGG
AGTAACACCTTTGCAAGGCATGGTTTTCTGAGAAATGACGATTCAGACTACAGCCAAAGGAATAGAAGTACCAAACTGTC
ACAGATCGCATTGTGTGCTATGGGAGCTTGCCGAGGGTAGGGTTGTCCTTGTAGGAAAGGAACAAAATTAAAGAAAAAGC
AAACACACCTGACATTAGACCTGATCACATGGGCAGTCAAGCTGCTCCTTTAGGAAACCTTGGGCGTATAGGAGCCAGAG
AGGCTGTCCGCTACCCCATCTGTGGTTGCCGGTGTTGCGACCCTTCTTGCTGCAAGGGGGGATTAAGGAGTTGTCGCCGC
TGCTGGAAGGTCCATGGTGGAGGACATGGGAGAAGATGATGATATGGAGAGGAGACTCTTCCTGGCCCTGCCTCCATTGG
TCTTGTTCCCTGGAGAGCGGGACAAGAGTAGGTGACTACTGATCGTTCGAGGCCTCTCTCAATTGGCTCTCGCACAGCGA
GCCGCCATCGCCACTTGTTCCCTGGTGACACCATCGCCAATGGTCGCAGAAAGGGAGAAGAGATGACTGGGCGTACGTCA
AGAGAGAGTTGAGAAGAGGTGCTGACCTGCAAGAGCTCGTTGTCATCTGCATCATGGATTGCCACTGCCGCCGCCGCCGC
CCCGAGAGAGATGATGAGATGTGTTTCGGGAGGAAAATAGGGTTAGTGGAGAAAAAGCTGAGGGGGTTGAGGGAGGGGTC
GAACCGGTTGAGTGGACACATTGACGAAAAAACCAGGGAAGGGTAAACGAAAAAAATCGGTGGAGGAGGGACGTGCGGGA
GGAGGGCAGACGAAGGACAACGACGTAAGAGGGGAAACAGAACGCTCCGTTTCTTTTAGGTAATAGAGATATCATGACAA
AAATAACTGATTTTTACATGAAGTTTTTTAATTCAAAGTTTTGCATGTTTTTGAGTGACGTTACTAATGTTTTCACTGAA
CTCCACGTATATTTGTTTGCACGTCGTTTGTCACCCCAAAATGAACTGAACTCATTCAGTTAGATTCTAAATCCCATTCT
CATATCATTTGAATTAGATGCAAAATATTTCAGTTACCATTCCCATACATA----TAGTATGTTTGG----ATGTCAAAC
GGAAGTAAAAGTTAATCAATCTACTTCCTCCCATCCAATTAATTAGCTAAC---------------GAGGGAGTATTATT
TTTTGTGCTTTGAATTTAATATCGTTTTCACACATAAAATATTGCTCAAAATCAGTTGAAATTTGGCTAATGTTGTTCGG
ATGGGGATCCAACTGTAAAAGTAAATCGACATCCAAATTTTCGTAGAACTTTGGTATTTAAAAGTTCAAGGTTGTGTTCA
TGCTATAAAGTTTCCATGAAAATAATTCAAAATTTTGATGGGCATTGTCTACGCACCGAGGAGCAACTTGAGCTTATTCC
TAGATCAACTCGTGCAAGTGGGTCCCATGTAATTGTATGTAGTAAATTTATGGTTTCAATTCTTGTGCTCAAATTTGTGG
AATGC-ATTTCAGTTCTTGGAGTATGGACTCAATTCATGGGAGCCGGACAAGGTTTTAATTGGATTTGTCATTTCTAAAG
CCACAAAAATCTTGCTTAAAAATTGAACAAGTTGCATATGTATGCATAGTATTTAGATCTAGATTCATCATTTCATATTT
CCTTTAGAAACACAGTATAGACGCACAC--TCACAACAAACACGTGTGCC--
>SNPs
SSSSSSSSSS---S---------S-S----------------S-SSSSS-------------------------------
-------SS-----------S--S--------S--S-----------SS--S-------------S--S-SS--------
------------------------------------------S---------------------------SS--------
------------------S------------------------------S--------------------------S---
---------------------------------------------S-SSSSS-------------------------S--
-----------S-S-----------------S-S---------SSSSSSS------S------------------S--S-
--------S-----------------------------------------------------------------------
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-S----------SS----------------------------------------S---------------------S-S-
----------------------------------------------------------S--------S------------
------------------------------S-----------------------------------S-------------
------------------------------------S----SSSSS---------S-----------------SSSSSSS
S--------------------------------------------------------SSSS-------------------
------------------------------------------------S-------------------------------
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---S-----------------------------------------S--------------------S-------------
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--------S--------------------------------------------------S--------------------
---------S----------S-----------------------------S---S-------------------------
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--------------S----------------------------S------------------------------------
-------------S------------------------------------------------------------------
------------------S-------------------------------------------------------------
--------------------------------------S-S----S-------------------S------------S-
---------------S------------------------------------S------------------------S--
-S-----S-----------------------------------------------------------------------S
------------------------S----------S-----------------------------------S--------
S--S---S-----------S--S--S---S--------S-S---S---S-------------------------------
---S--------S--SS---------S-----------------------------------------------------
-----------S------------S--S--------------------S-------------------------------
-------------S-----------S---S---S----------------SS
>forward_450
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------------------------------GCACGGGCATAGCATAGCTA------------------------------
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>reverse_4558
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-----------------------------------------------------------------------------TGG
AGGGGGAACCAACTGTA---------------------------------------------------------------
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